Query 044963
Match_columns 104
No_of_seqs 100 out of 112
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2khf_A PLNJ; anti-microbial, b 27.2 32 0.0011 18.6 1.5 12 42-53 2-13 (26)
2 2jya_A AGR_C_3324P, uncharacte 12.3 45 0.0016 22.9 0.0 11 63-73 86-96 (106)
3 3n4p_A Terminase subunit UL89 11.9 1.2E+02 0.0042 24.2 2.4 33 37-69 186-226 (279)
4 2lju_A Putative oxidoreductase 11.0 47 0.0016 22.9 -0.3 11 62-72 93-103 (108)
5 4day_C Fanconi anemia group M 8.9 78 0.0027 18.4 0.2 15 62-76 9-23 (37)
6 2igr_A Anticancer peptide CB1A 6.7 1.3E+02 0.0045 16.9 0.5 8 39-46 21-28 (34)
7 1b4r_A Protein (PKD1_human); P 6.5 1.1E+02 0.0037 19.5 0.0 16 61-76 23-38 (80)
8 1g2h_A Transcriptional regulat 6.4 2.1E+02 0.0073 16.4 1.3 11 43-53 47-57 (61)
9 1jh4_B PAIP1, polyadenylate-bi 6.2 1.1E+02 0.0038 16.5 -0.0 13 62-74 13-25 (26)
10 1ich_A TNF-1, tumor necrosis f 6.2 2.3E+02 0.0079 19.3 1.5 15 38-52 23-37 (112)
No 1
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=27.24 E-value=32 Score=18.56 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.9
Q ss_pred hHHHHHHHHhhc
Q 044963 42 RWIVLLMKFKKE 53 (104)
Q Consensus 42 rWk~lwRRl~r~ 53 (104)
.||+||--+++.
T Consensus 2 awknfwsslrkg 13 (26)
T 2khf_A 2 AWKNFWSSLRKG 13 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHhh
Confidence 599999988763
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=12.33 E-value=45 Score=22.92 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=0.0
Q ss_pred CchhhhhccCC
Q 044963 63 DAYTYSQNFDQ 73 (104)
Q Consensus 63 Dp~SYa~NFD~ 73 (104)
-|-|||-||--
T Consensus 86 r~ksYadNF~~ 96 (106)
T 2jya_A 86 KVVSYTDNFRF 96 (106)
T ss_dssp -----------
T ss_pred CcCchHHhCCc
Confidence 47899999963
No 3
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=11.87 E-value=1.2e+02 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCchhhHHHHHHHHhhcccc--------cccccCCchhhhh
Q 044963 37 GQSKLRWIVLLMKFKKEKRK--------MFQVPYDAYTYSQ 69 (104)
Q Consensus 37 ~~~~prWk~lwRRl~r~krr--------~~~~~YDp~SYa~ 69 (104)
..+.+..-.||.+|+-..=+ ..+++|||.+|..
T Consensus 186 ~eK~~Afe~FI~~fNSG~i~ASQelVS~TIkLs~DPVeYL~ 226 (279)
T 3n4p_A 186 RDKALAVEQFISRFNSGYIKASQELVSYTIKLSHDPIEYLL 226 (279)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEEEECSSSBTTBCHHHHHH
T ss_pred cchHHHHHHHHHHhcCCceEEeeeeeeeeEEeccChHHHHH
Confidence 34567888999999976321 2389999999974
No 4
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=10.97 E-value=47 Score=22.87 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.9
Q ss_pred CCchhhhhccC
Q 044963 62 YDAYTYSQNFD 72 (104)
Q Consensus 62 YDp~SYa~NFD 72 (104)
--|-+||-||-
T Consensus 93 ~r~ksYadNF~ 103 (108)
T 2lju_A 93 IVPKSYADNFT 103 (108)
T ss_dssp CCCCCCCCCCC
T ss_pred CCcCchHHHCC
Confidence 45789999995
No 5
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=8.94 E-value=78 Score=18.40 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=10.6
Q ss_pred CCchhhhhccCCCCC
Q 044963 62 YDAYTYSQNFDQGFA 76 (104)
Q Consensus 62 YDp~SYa~NFD~G~~ 76 (104)
+-..-|+-|||=|--
T Consensus 9 ~S~~LFSVnFDLGf~ 23 (37)
T 4day_C 9 CSRDLFSVTFDLGFC 23 (37)
T ss_pred cccceEEEEeccccc
Confidence 334458899999954
No 6
>2igr_A Anticancer peptide CB1A; cecropin, antimicrobial peptide, ploycat peptide, cecropin fingerprint sequence, de novo protein; NMR {Hyalophora cecropia}
Probab=6.72 E-value=1.3e+02 Score=16.93 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=6.2
Q ss_pred chhhHHHH
Q 044963 39 SKLRWIVL 46 (104)
Q Consensus 39 ~~prWk~l 46 (104)
+||+|+.|
T Consensus 21 agpkwkvf 28 (34)
T 2igr_A 21 AGPKWKVF 28 (34)
T ss_dssp HCCHHHHH
T ss_pred hCcchHHH
Confidence 57889876
No 7
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=6.51 E-value=1.1e+02 Score=19.45 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.3
Q ss_pred cCCchhhhhccCCCCC
Q 044963 61 PYDAYTYSQNFDQGFA 76 (104)
Q Consensus 61 ~YDp~SYa~NFD~G~~ 76 (104)
..+|.+|.-+|-||..
T Consensus 23 s~~~~~y~WdFGDGs~ 38 (80)
T 1b4r_A 23 PLPVTATRWDFGDGSA 38 (80)
T ss_dssp CSSCSEEEEECCSSCC
T ss_pred CCCCCEEEEECCCCCc
Confidence 3678899999999975
No 8
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=6.41 E-value=2.1e+02 Score=16.41 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.2
Q ss_pred HHHHHHHHhhc
Q 044963 43 WIVLLMKFKKE 53 (104)
Q Consensus 43 Wk~lwRRl~r~ 53 (104)
-.+||+|+++.
T Consensus 47 r~tL~rklkk~ 57 (61)
T 1g2h_A 47 HTAIANKLKQY 57 (61)
T ss_dssp THHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 36888888864
No 9
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=6.24 E-value=1.1e+02 Score=16.53 Aligned_cols=13 Identities=15% Similarity=0.398 Sum_probs=6.8
Q ss_pred CCchhhhhccCCC
Q 044963 62 YDAYTYSQNFDQG 74 (104)
Q Consensus 62 YDp~SYa~NFD~G 74 (104)
+=|.-|++|||+.
T Consensus 13 F~Psgys~~~~~~ 25 (26)
T 1jh4_B 13 FYPSGYSSSYXXX 25 (26)
T ss_dssp CCCTTCCCCC---
T ss_pred eccCccccccccc
Confidence 3466677887763
No 10
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=6.15 E-value=2.3e+02 Score=19.34 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=11.9
Q ss_pred CchhhHHHHHHHHhh
Q 044963 38 QSKLRWIVLLMKFKK 52 (104)
Q Consensus 38 ~~~prWk~lwRRl~r 52 (104)
.....||.|.||+.-
T Consensus 23 v~~~~WK~~aRkLGL 37 (112)
T 1ich_A 23 VPPLRWKEFVKRLGL 37 (112)
T ss_dssp SCSTTHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 344689999999974
Done!