Query 044963
Match_columns 104
No_of_seqs 100 out of 112
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 14:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qqra1 b.34.9.1 (A:897-955) J 20.4 9.6 0.0007 22.8 -0.1 11 66-76 31-41 (59)
2 d1umqa_ a.4.1.12 (A:) Photosyn 14.5 39 0.0028 18.7 1.6 12 43-54 47-58 (60)
3 d2iw0a1 c.6.2.3 (A:29-248) Chi 7.6 40 0.0029 22.1 -0.1 11 66-76 15-25 (220)
4 d1or7a2 a.177.1.1 (A:-1-111) S 7.2 73 0.0053 18.4 1.0 15 60-75 98-112 (113)
5 d1tc3c_ a.4.1.2 (C:) Transposa 6.8 29 0.0021 20.0 -1.0 27 43-69 24-50 (51)
6 d2c71a1 c.6.2.3 (A:480-683) Xy 5.7 57 0.0042 21.2 -0.1 8 68-75 4-11 (204)
7 d2hbaa1 d.100.1.1 (A:1-52) Rib 5.6 67 0.0049 17.8 0.2 6 66-71 24-29 (52)
8 d2j01i2 d.100.1.1 (I:1-55) Rib 5.4 70 0.0051 18.0 0.2 7 65-71 23-29 (55)
9 d2c1ia1 c.6.2.3 (A:268-463) Pe 5.3 59 0.0043 21.0 -0.2 8 68-75 4-11 (196)
10 d2cc0a1 c.6.2.3 (A:1-192) Acet 5.3 63 0.0046 20.9 -0.1 9 68-76 8-16 (192)
No 1
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.39 E-value=9.6 Score=22.76 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=8.9
Q ss_pred hhhhccCCCCC
Q 044963 66 TYSQNFDQGFA 76 (104)
Q Consensus 66 SYa~NFD~G~~ 76 (104)
=|.-|||||.-
T Consensus 31 fyeV~FdDgS~ 41 (59)
T d2qqra1 31 FYEVNFDDGSF 41 (59)
T ss_dssp EEEEEETTSCE
T ss_pred EEEEEecCCCc
Confidence 38899999964
No 2
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.48 E-value=39 Score=18.74 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcc
Q 044963 43 WIVLLMKFKKEK 54 (104)
Q Consensus 43 Wk~lwRRl~r~k 54 (104)
-++|||||++..
T Consensus 47 R~TL~rkmkky~ 58 (60)
T d1umqa_ 47 RRTLQRILAKRS 58 (60)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHHcC
Confidence 468888888753
No 3
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=7.57 E-value=40 Score=22.08 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=8.5
Q ss_pred hhhhccCCCCC
Q 044963 66 TYSQNFDQGFA 76 (104)
Q Consensus 66 SYa~NFD~G~~ 76 (104)
.=|+.||||..
T Consensus 15 ~VaLTFDDGp~ 25 (220)
T d2iw0a1 15 LVALTYDDGPF 25 (220)
T ss_dssp EEEEEEESCSC
T ss_pred EEEEEEeCCCc
Confidence 35889999963
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=7.18 E-value=73 Score=18.36 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=8.6
Q ss_pred ccCCchhhhhccCCCC
Q 044963 60 VPYDAYTYSQNFDQGF 75 (104)
Q Consensus 60 ~~YDp~SYa~NFD~G~ 75 (104)
..-|..+ +.|||+|.
T Consensus 98 ~~~~~~~-~e~~e~~~ 112 (113)
T d1or7a2 98 SDVDAIE-AENFESGG 112 (113)
T ss_dssp HHHHHHH-HHSCCSSC
T ss_pred CCccccc-cccCCCCC
Confidence 3344444 57787774
No 5
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.79 E-value=29 Score=19.97 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHhhcccccccccCCchhhhh
Q 044963 43 WIVLLMKFKKEKRKMFQVPYDAYTYSQ 69 (104)
Q Consensus 43 Wk~lwRRl~r~krr~~~~~YDp~SYa~ 69 (104)
+...-|+++|.+.-|-..-=||++|-+
T Consensus 24 lhemaR~i~rSR~~ir~Yl~~Pl~YG~ 50 (51)
T d1tc3c_ 24 LHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred HHHHHHHHHHhHHHHHHHhcChhhccC
Confidence 445556666655434456669999965
No 6
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}
Probab=5.69 E-value=57 Score=21.18 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=6.4
Q ss_pred hhccCCCC
Q 044963 68 SQNFDQGF 75 (104)
Q Consensus 68 a~NFD~G~ 75 (104)
|+.||||.
T Consensus 4 aLTfDDGp 11 (204)
T d2c71a1 4 ALTFDDGP 11 (204)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 67899985
No 7
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.57 E-value=67 Score=17.83 Aligned_cols=6 Identities=50% Similarity=1.071 Sum_probs=4.6
Q ss_pred hhhhcc
Q 044963 66 TYSQNF 71 (104)
Q Consensus 66 SYa~NF 71 (104)
-||.||
T Consensus 24 GyarN~ 29 (52)
T d2hbaa1 24 GYANNF 29 (52)
T ss_dssp HHHHHT
T ss_pred cchhHh
Confidence 488887
No 8
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=5.41 E-value=70 Score=18.00 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=5.2
Q ss_pred hhhhhcc
Q 044963 65 YTYSQNF 71 (104)
Q Consensus 65 ~SYa~NF 71 (104)
..||.||
T Consensus 23 ~GyaRN~ 29 (55)
T d2j01i2 23 PGYARNY 29 (55)
T ss_dssp HHHHHHT
T ss_pred hhhHHHH
Confidence 3588888
No 9
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=5.34 E-value=59 Score=20.98 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=6.6
Q ss_pred hhccCCCC
Q 044963 68 SQNFDQGF 75 (104)
Q Consensus 68 a~NFD~G~ 75 (104)
|+.||||.
T Consensus 4 aLTFDDgp 11 (196)
T d2c1ia1 4 ALTFNDGP 11 (196)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 67899995
No 10
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}
Probab=5.30 E-value=63 Score=20.88 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=7.1
Q ss_pred hhccCCCCC
Q 044963 68 SQNFDQGFA 76 (104)
Q Consensus 68 a~NFD~G~~ 76 (104)
|+-||||..
T Consensus 8 aLTFDDGp~ 16 (192)
T d2cc0a1 8 GLTFDDGPS 16 (192)
T ss_dssp EEEEESCCS
T ss_pred EEEEecCCc
Confidence 678999963
Done!