BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044964
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 3 SSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETF-IDNQLIRGEDISP 61
S S P+ + P V+Y+VFLSFRG DTR+ FT LY +L R KI TF D++L++G++I P
Sbjct: 22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGP 81
Query: 62 SLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYG-QIVIPVFYHVEPSNVRNQ 120
+LL AI++SKI V I S GYA S WCL EL +I+ +++ +I++P+FY V+PS+VR+Q
Sbjct: 82 NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141
Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGF 158
TG + AF +F G+ ++ W+ AL++ ++ G+
Sbjct: 142 TGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKIS 73
KYDVFLSFRG DTR NF S LY L R+ I TF D+ +L G+ SP L IE S+ +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 74 VVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133
VV+ S+ YA+S WCL+ELV I++ + K V+P+FY VEP++VR QTG+ + F +
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF----K 122
Query: 134 RFVGRED--KLRTWRIALREAANISG 157
+ RED K+ WR AL A +SG
Sbjct: 123 KHASREDPEKVLKWRQALTNFAQLSG 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 8 PTATVPQV-KYDVFLSFRGED---TRDNFTSHL---YAALCRKKIETFIDNQLIRGEDIS 60
P T P + KYD +L F +D ++ HL Y+ R + F + + GE+
Sbjct: 661 PQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNL-CFEERDFVPGENRI 719
Query: 61 PSLLDAIERSKISVVIFSKGYASSGWCLE 89
++ DAI S+ V + S+ + GWCLE
Sbjct: 720 ANIQDAIWNSRKIVCLVSRHFLRDGWCLE 748
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 14 QVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETF--------IDNQLIRGEDISPSLLD 65
+ YD F+S+ D ++ L +++E F I G+ I +++D
Sbjct: 3 NIXYDAFVSYSERD------AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIID 56
Query: 66 AIERSKISVVIFSKGYASSGWCLEEL 91
+IE+S +V + S+ + S W EL
Sbjct: 57 SIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFI-DNQLIRGEDISPSLLDAIERSKIS 73
+++ F+S+ G D+ + L L ++ + + + + G+ I +++ IE+S S
Sbjct: 11 LQFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKS 69
Query: 74 VVIFSKGYASSGWCLEEL 91
+ + S + S WC EL
Sbjct: 70 IFVLSPNFVQSEWCHYEL 87
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 14 QVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETF--------IDNQLIRGEDISPSLLD 65
+ YD F+S+ D ++ L +++E F I G+ I +++D
Sbjct: 3 NIXYDAFVSYSERD------AYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIID 56
Query: 66 AIERSKISVVIFSKGYASSGWCLEEL 91
+IE+S +V + S+ + S W EL
Sbjct: 57 SIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETF--------IDNQLIRGEDISPSLLDAIE 68
YD F+S+ D ++ L +++E F I G+ I +++D+IE
Sbjct: 3 YDAFVSYSERD------AYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIE 56
Query: 69 RSKISVVIFSKGYASSGWCLEEL 91
+S +V + S+ + S W EL
Sbjct: 57 KSHKTVFVLSENFVKSEWSKYEL 79
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 56 GEDISPSLLDAIERSKISVVIFSKGYASSGWCLEEL 91
G+ IS +++ IE+S S+ + S + + WC E
Sbjct: 77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,739,904
Number of Sequences: 62578
Number of extensions: 181623
Number of successful extensions: 400
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 11
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)