Query 044964
Match_columns 163
No_of_seqs 143 out of 1244
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.1E-53 7.1E-58 329.9 11.4 160 1-162 19-181 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-51 4.6E-56 314.2 10.6 149 11-161 3-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 4.2E-37 1.4E-41 229.5 3.0 136 11-152 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 4.2E-31 1.4E-35 195.9 4.2 133 8-149 2-145 (146)
5 2js7_A Myeloid differentiation 99.9 1.3E-26 4.6E-31 173.9 7.8 102 10-113 10-116 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 2.6E-27 9E-32 175.8 2.9 104 13-118 2-111 (149)
7 2j67_A TOLL like receptor 10; 99.9 1E-26 3.5E-31 177.4 4.7 108 10-119 29-142 (178)
8 1t3g_A X-linked interleukin-1 99.9 9E-26 3.1E-30 169.3 6.7 100 15-114 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 6.1E-20 2.1E-24 166.4 6.8 100 11-112 665-772 (844)
10 1eiw_A Hypothetical protein MT 98.4 5.7E-07 1.9E-11 63.1 5.8 72 15-109 3-74 (111)
11 3hyn_A Putative signal transdu 97.1 0.0036 1.2E-07 47.3 9.2 103 24-131 27-139 (189)
12 2f62_A Nucleoside 2-deoxyribos 92.9 0.51 1.7E-05 34.5 7.8 83 15-97 9-97 (161)
13 2khz_A C-MYC-responsive protei 92.2 1.7 5.7E-05 31.6 10.0 80 14-97 9-102 (165)
14 4fyk_A Deoxyribonucleoside 5'- 84.6 4.4 0.00015 29.3 7.4 76 18-97 4-93 (152)
15 2yvq_A Carbamoyl-phosphate syn 78.0 9 0.00031 26.9 7.0 62 19-82 27-107 (143)
16 3ehd_A Uncharacterized conserv 75.7 16 0.00054 26.5 7.9 74 30-108 19-103 (162)
17 1s2d_A Purine trans deoxyribos 65.7 32 0.0011 24.9 7.7 77 18-97 9-108 (167)
18 2jug_A TUBC protein; docking d 50.0 12 0.00042 23.4 2.7 37 34-70 8-48 (78)
19 1byr_A Protein (endonuclease); 47.9 21 0.00072 24.4 4.0 36 31-67 14-50 (155)
20 4a6h_A Phosphatidylinositol 4, 44.8 13 0.00045 25.2 2.4 20 137-156 101-120 (120)
21 1f8y_A Nucleoside 2-deoxyribos 43.7 55 0.0019 23.3 5.7 74 30-108 18-112 (157)
22 2d9v_A Pleckstrin homology dom 43.1 21 0.00072 24.0 3.3 22 137-158 97-118 (130)
23 1v5p_A Pleckstrin homology dom 40.6 18 0.00062 24.6 2.6 20 137-156 103-122 (126)
24 1sc3_B Interleukin-1 beta conv 36.6 10 0.00034 24.6 0.7 25 20-44 21-45 (88)
25 2yry_A Pleckstrin homology dom 36.5 23 0.00079 23.0 2.6 18 138-155 104-121 (122)
26 1wu7_A Histidyl-tRNA synthetas 34.8 47 0.0016 27.2 4.7 35 16-51 332-366 (434)
27 2cof_A Protein KIAA1914; PH do 34.5 27 0.00091 22.4 2.6 18 138-155 85-102 (107)
28 2coc_A FYVE, rhogef and PH dom 33.4 27 0.00093 23.3 2.5 18 137-154 89-106 (112)
29 1v95_A Nuclear receptor coacti 32.9 1.2E+02 0.0042 21.0 6.6 45 30-75 21-66 (130)
30 2ql9_B Caspase-7; cysteine pro 32.2 12 0.0004 24.6 0.4 29 16-44 10-47 (97)
31 1qtn_B Caspase-8; apoptosis, d 31.8 11 0.00038 24.7 0.3 29 16-44 12-49 (95)
32 3czq_A Putative polyphosphate 29.9 1.2E+02 0.0042 24.0 6.2 99 18-117 86-204 (304)
33 1dro_A Beta-spectrin; cytoskel 29.6 33 0.0011 22.6 2.4 19 138-156 103-121 (122)
34 3aon_B V-type sodium ATPase su 29.3 58 0.002 22.0 3.6 49 39-93 16-64 (115)
35 2i5f_A Pleckstrin; PH domain, 29.3 36 0.0012 21.5 2.5 16 138-153 93-108 (109)
36 2dko_B Caspase-3; low barrier 28.9 14 0.00049 24.5 0.4 29 16-44 16-53 (103)
37 1evl_A Threonyl-tRNA synthetas 28.8 61 0.0021 26.3 4.4 56 16-75 298-354 (401)
38 4f3h_A Fimxeal, putative uncha 28.6 77 0.0026 23.5 4.6 98 30-133 9-120 (250)
39 2p5s_A RAS and EF-hand domain 28.6 1.5E+02 0.005 20.6 6.0 27 55-81 85-112 (199)
40 1pyo_B Caspase-2; apoptosis, c 28.2 15 0.00052 24.5 0.4 29 16-44 14-51 (105)
41 3cxb_B Pleckstrin homology dom 27.9 38 0.0013 22.1 2.5 18 137-154 84-101 (112)
42 4g84_A Histidine--tRNA ligase, 27.8 1E+02 0.0035 25.2 5.6 58 15-75 365-423 (464)
43 3ikl_A DNA polymerase subunit 27.6 2.4E+02 0.0083 23.7 7.9 53 27-83 361-417 (459)
44 4hde_A SCO1/SENC family lipopr 27.4 70 0.0024 22.3 4.0 44 71-115 33-79 (170)
45 3net_A Histidyl-tRNA synthetas 27.3 68 0.0023 26.7 4.5 62 15-80 370-431 (465)
46 1wgq_A FYVE, rhogef and PH dom 27.3 39 0.0013 21.5 2.4 17 138-154 87-103 (109)
47 2i4l_A Proline-tRNA ligase; al 27.2 24 0.00082 29.5 1.6 44 17-60 366-412 (458)
48 1x1g_A Pleckstrin 2; PH domain 27.0 41 0.0014 22.0 2.6 19 137-155 107-125 (129)
49 1wjm_A Beta-spectrin III; PH d 27.0 36 0.0012 22.3 2.3 17 138-154 101-117 (123)
50 1upq_A PEPP1; PH domain, phosp 27.0 40 0.0014 21.8 2.5 20 138-157 93-112 (123)
51 2w2x_D 1-phosphatidylinositol- 26.9 36 0.0012 22.7 2.3 19 137-155 102-120 (124)
52 1bax_A M-PMV MA, M-PMV matrix 26.7 34 0.0012 22.6 1.9 18 30-47 9-26 (94)
53 3aj4_A Pleckstrin homology dom 26.2 43 0.0015 21.3 2.5 17 137-153 94-110 (112)
54 3lc0_A Histidyl-tRNA synthetas 26.2 1.2E+02 0.004 25.3 5.7 60 15-78 360-419 (456)
55 1x1f_A Signal-transducing adap 26.0 40 0.0014 23.7 2.4 19 138-156 97-115 (149)
56 2dkp_A Pleckstrin homology dom 26.0 44 0.0015 21.8 2.6 18 138-155 103-120 (128)
57 4g85_A Histidine-tRNA ligase, 26.0 1.1E+02 0.0037 25.7 5.6 61 15-78 418-478 (517)
58 1v88_A Oxysterol binding prote 25.8 49 0.0017 22.5 2.8 20 137-156 107-126 (130)
59 2lul_A Tyrosine-protein kinase 25.7 41 0.0014 23.7 2.5 19 137-155 104-122 (164)
60 2d9y_A Pleckstrin homology dom 25.7 44 0.0015 21.3 2.5 18 138-155 93-110 (117)
61 3pid_A UDP-glucose 6-dehydroge 25.5 50 0.0017 27.6 3.3 49 26-74 347-400 (432)
62 4h3d_A 3-dehydroquinate dehydr 24.8 88 0.003 24.0 4.4 66 36-102 104-169 (258)
63 1x05_A Pleckstrin; PH domain, 24.5 47 0.0016 21.7 2.5 19 137-155 103-121 (129)
64 2xzd_B Caspase-3; hydrolase-pr 24.2 22 0.00074 24.3 0.7 28 17-44 16-52 (118)
65 4a7p_A UDP-glucose dehydrogena 24.1 73 0.0025 26.6 4.1 58 26-83 337-403 (446)
66 1v89_A Hypothetical protein KI 24.0 45 0.0015 21.2 2.3 18 137-154 95-112 (118)
67 2efe_B Small GTP-binding prote 23.4 1.7E+02 0.0058 19.5 7.6 27 55-81 69-96 (181)
68 2d00_A V-type ATP synthase sub 23.3 1.7E+02 0.0057 19.4 5.3 52 38-94 16-67 (109)
69 2d9x_A Oxysterol binding prote 23.2 47 0.0016 21.6 2.3 19 138-156 88-106 (120)
70 1btn_A Beta-spectrin; signal t 23.1 47 0.0016 20.8 2.2 16 137-152 91-106 (106)
71 3ro3_B Minsc, peptide of prote 23.1 53 0.0018 15.6 1.7 14 139-152 7-20 (22)
72 2dhk_A TBC1 domain family memb 23.0 51 0.0018 21.5 2.4 16 138-153 88-103 (119)
73 2r6o_A Putative diguanylate cy 23.0 1.1E+02 0.0036 23.8 4.6 100 30-133 25-140 (294)
74 3g79_A NDP-N-acetyl-D-galactos 22.9 64 0.0022 27.3 3.5 52 26-77 368-422 (478)
75 4e51_A Histidine--tRNA ligase; 22.7 92 0.0031 26.0 4.4 63 15-78 353-416 (467)
76 1u5d_A SKAP55, SRC kinase-asso 22.6 51 0.0017 20.5 2.3 17 138-154 89-105 (108)
77 2dn6_A KIAA0640 protein; PH do 22.4 51 0.0017 20.9 2.3 18 138-155 87-104 (115)
78 2fg5_A RAB-22B, RAS-related pr 22.3 1.9E+02 0.0067 19.8 7.5 29 55-83 80-109 (192)
79 1fgy_A GRP1; PH domain, signal 21.8 52 0.0018 21.2 2.3 17 138-154 104-120 (127)
80 1v5u_A SBF1, SET binding facto 21.7 47 0.0016 21.2 2.0 18 138-155 95-112 (117)
81 3ojo_A CAP5O; rossmann fold, c 21.6 1.2E+02 0.0039 25.3 4.8 53 25-78 329-383 (431)
82 2rsg_A Collagen type IV alpha- 21.1 30 0.001 21.5 0.8 15 138-152 78-92 (94)
83 2fcj_A Small toprim domain pro 21.0 62 0.0021 22.1 2.5 64 31-97 39-103 (119)
84 1unq_A RAC-alpha serine/threon 21.0 55 0.0019 21.3 2.3 18 137-154 93-110 (125)
85 1dlj_A UDP-glucose dehydrogena 21.0 1.3E+02 0.0046 24.2 5.0 50 26-75 324-379 (402)
86 3rjm_B Caspase-2; caspase-2, c 20.8 24 0.00083 24.0 0.4 29 16-44 15-52 (117)
87 2da0_A 130-kDa phosphatidylino 20.7 60 0.0021 20.9 2.4 17 138-154 85-101 (114)
88 3dt5_A Uncharacterized protein 20.5 31 0.0011 23.1 0.8 39 79-117 35-77 (135)
89 2cod_A Centaurin-delta 1; ARF 20.3 64 0.0022 20.6 2.4 16 138-153 83-98 (115)
90 1pls_A Pleckstrin homology dom 20.0 66 0.0022 20.4 2.4 18 138-155 85-102 (113)
91 4f21_A Carboxylesterase/phosph 20.0 1.7E+02 0.0059 21.6 5.2 34 16-49 183-218 (246)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.1e-53 Score=329.89 Aligned_cols=160 Identities=44% Similarity=0.829 Sum_probs=140.1
Q ss_pred CCCCCC-CCCCCCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEe
Q 044964 1 MASSSF-PPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFS 78 (163)
Q Consensus 1 ~~~~~~-~~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS 78 (163)
||++++ +||++++.++||||||||++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||
T Consensus 19 ~~~~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S 98 (204)
T 3ozi_A 19 DAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIIS 98 (204)
T ss_dssp ---------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEEC
T ss_pred cccccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEE
Confidence 355555 567778899999999999999988999999999999999999998 999999999999999999999999999
Q ss_pred cCCcCchhhHHHHHHHHHhhhh-cCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhcccc
Q 044964 79 KGYASSGWCLEELVKILECKDK-YGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISG 157 (163)
Q Consensus 79 ~~y~~S~wc~~El~~~~~~~~~-~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g 157 (163)
+||+.|+||++||..|++|.++ ++++||||||+|+|++||+|+|.||++|.++.+++ +++++++||.||++|++++|
T Consensus 99 ~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG 176 (204)
T 3ozi_A 99 SGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKG 176 (204)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCB
T ss_pred cccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999865 57899999999999999999999999999998877 47899999999999999999
Q ss_pred ccccC
Q 044964 158 FDSNT 162 (163)
Q Consensus 158 ~~~~~ 162 (163)
|++.+
T Consensus 177 ~~~~~ 181 (204)
T 3ozi_A 177 WHIGK 181 (204)
T ss_dssp EEECT
T ss_pred eecCC
Confidence 99864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-51 Score=314.21 Aligned_cols=149 Identities=46% Similarity=0.783 Sum_probs=126.5
Q ss_pred CCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhHH
Q 044964 11 TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLE 89 (163)
Q Consensus 11 ~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~ 89 (163)
++..++||||||||++|+|++|+++|+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 44678999999999999988999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhcccccccc
Q 044964 90 ELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN 161 (163)
Q Consensus 90 El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~ 161 (163)
||..+++|.++++++||||||+|+|++||+|+|.||++|.++.++ .+.+++++||.||++|++++|+++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 999999999888999999999999999999999999999999887 4689999999999999999999873
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=4.2e-37 Score=229.54 Aligned_cols=136 Identities=18% Similarity=0.305 Sum_probs=118.6
Q ss_pred CCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhHH
Q 044964 11 TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLE 89 (163)
Q Consensus 11 ~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~ 89 (163)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+||+|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 45799999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 044964 90 ELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREA 152 (163)
Q Consensus 90 El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v 152 (163)
||..++++...++++||||||+++|++|++|.|.|++.|..... ...+.++-..|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 99999998777788999999999999999999999987764322 33455555555554
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=4.2e-31 Score=195.88 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=93.5
Q ss_pred CCCCCCCceeeEEEecccccCchhHHHHHHHHHhc--CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCc
Q 044964 8 PTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCR--KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASS 84 (163)
Q Consensus 8 ~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~--~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S 84 (163)
|+|...++.|||||||+++|+ .||.+|..+|++ .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|++|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 456677889999999999996 589999999998 599999998 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhcCceeEeEEeeeCCccccc----cccc----hHHHHHHHHHhccCChhHHHHHHHHH
Q 044964 85 GWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRN----QTGI----FGDAFSMFEERFVGREDKLRTWRIAL 149 (163)
Q Consensus 85 ~wc~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~----~~~~----f~~~f~~~~~~~~~~~~~~~~W~~al 149 (163)
.||+.|+..|+.+...+..+|||||++++++++.. .... ....|..+ .+.+.+|+.||
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 99999999999876333447889999887665543 3221 12333322 46778888775
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1.3e-26 Score=173.95 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=91.3
Q ss_pred CCCCCceeeEEEecccccCchhHHHHHHHHHhcC--CceeeecC-cccccccCchhHHHhhh-hcceEEEEEecCCcCch
Q 044964 10 ATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIETFIDN-QLIRGEDISPSLLDAIE-RSKISVVIFSKGYASSG 85 (163)
Q Consensus 10 s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~-~~~~G~~~~~~i~~aI~-~S~~~IvvlS~~y~~S~ 85 (163)
..+.++.|||||||+++| ..||.+|..+|++. |+++|+|+ |+.||+.+.++|.++|+ +|+++|+|+||+|++|.
T Consensus 10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~ 87 (160)
T 2js7_A 10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK 87 (160)
T ss_dssp TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence 344568899999999999 47999999999984 69999998 99999999999999999 79999999999999999
Q ss_pred hhHHHHHHHHHhh-hhcCceeEeEEeeeC
Q 044964 86 WCLEELVKILECK-DKYGQIVIPVFYHVE 113 (163)
Q Consensus 86 wc~~El~~~~~~~-~~~~~~iiPIf~~v~ 113 (163)
||+.|+..|+++. .+++.+||||+|+.-
T Consensus 88 wc~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 88 ECDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 9999999999875 445679999999643
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=2.6e-27 Score=175.76 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=92.9
Q ss_pred CCceeeEEEecccccCchhHHHH-HHHHHhcC--CceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhH
Q 044964 13 PQVKYDVFLSFRGEDTRDNFTSH-LYAALCRK--KIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCL 88 (163)
Q Consensus 13 ~~~~ydVFISys~~D~~~~fv~~-L~~~L~~~--gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~ 88 (163)
.++.|||||||+++|. .||.+ |...|++. |+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 79986 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhhcCceeEeEEee-eCCcccc
Q 044964 89 EELVKILE-CKDKYGQIVIPVFYH-VEPSNVR 118 (163)
Q Consensus 89 ~El~~~~~-~~~~~~~~iiPIf~~-v~p~~v~ 118 (163)
.|+..|+. +.++++.+||||||+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 99999985 345667899999994 6665554
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=1e-26 Score=177.41 Aligned_cols=108 Identities=18% Similarity=0.318 Sum_probs=90.1
Q ss_pred CCCCCceeeEEEecccccCchhHHHH-HHHHHhc--CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCch
Q 044964 10 ATVPQVKYDVFLSFRGEDTRDNFTSH-LYAALCR--KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSG 85 (163)
Q Consensus 10 s~~~~~~ydVFISys~~D~~~~fv~~-L~~~L~~--~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~ 85 (163)
....++.|||||||+++|. .||.. |...|++ .|+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|.
T Consensus 29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3457789999999999995 79975 9999998 899999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hhcCceeEeEEee-eCCccccc
Q 044964 86 WCLEELVKILECK-DKYGQIVIPVFYH-VEPSNVRN 119 (163)
Q Consensus 86 wc~~El~~~~~~~-~~~~~~iiPIf~~-v~p~~v~~ 119 (163)
||+.|+..|+++. ++++++||||||+ +.+.++..
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 9999999998653 5567799999995 55554443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=9e-26 Score=169.26 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=88.4
Q ss_pred ceeeEEEecccccC---------chhHHHHHHH-HHh-cCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCc
Q 044964 15 VKYDVFLSFRGEDT---------RDNFTSHLYA-ALC-RKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYA 82 (163)
Q Consensus 15 ~~ydVFISys~~D~---------~~~fv~~L~~-~L~-~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~ 82 (163)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|+ |+.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3578888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hhcCceeEeEEeeeCC
Q 044964 83 -SSGWCLEELVKILECK-DKYGQIVIPVFYHVEP 114 (163)
Q Consensus 83 -~S~wc~~El~~~~~~~-~~~~~~iiPIf~~v~p 114 (163)
.|.||+.|+..|+.+. .+++.+||||++.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999875 5667899999986333
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=6.1e-20 Score=166.39 Aligned_cols=100 Identities=23% Similarity=0.399 Sum_probs=90.2
Q ss_pred CCCCceeeEEEecccccCchhHH-HHHHHHHhc-----CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcC
Q 044964 11 TVPQVKYDVFLSFRGEDTRDNFT-SHLYAALCR-----KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYAS 83 (163)
Q Consensus 11 ~~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~-----~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~ 83 (163)
....++|||||||+++|. .|| ..|...|+. .|+++|+++ |+.||+.+.++|.++|++||++|+|+|++|+.
T Consensus 665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence 345789999999999995 687 779999985 589999999 99999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhh-hhcCceeEeEEeee
Q 044964 84 SGWCLEELVKILECK-DKYGQIVIPVFYHV 112 (163)
Q Consensus 84 S~wc~~El~~~~~~~-~~~~~~iiPIf~~v 112 (163)
|+||..|+..|+.+. ++++++||||||+-
T Consensus 743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~ 772 (844)
T 3j0a_A 743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGS 772 (844)
T ss_dssp HTSTTHHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 999999999998764 66778999999963
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.38 E-value=5.7e-07 Score=63.10 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=53.3
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI 94 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 94 (163)
.+|.+||||+.+| . ...|...|.+.|+..- + +.|+.|.++|++.++...+|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~------------~---~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR------------P---ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE------------E---CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee------------c---CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4799999999888 2 3344444434455321 1 789999999999999999999999999888
Q ss_pred HHhhhhcCceeEeEE
Q 044964 95 LECKDKYGQIVIPVF 109 (163)
Q Consensus 95 ~~~~~~~~~~iiPIf 109 (163)
.+ .+..||-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 445666665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.10 E-value=0.0036 Score=47.26 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=68.2
Q ss_pred ccccCchhHHHHHHHHHhcCCceeeecC-ccc-------c-cccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964 24 RGEDTRDNFTSHLYAALCRKKIETFIDN-QLI-------R-GEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI 94 (163)
Q Consensus 24 s~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~-------~-G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 94 (163)
..+|. .+...|..--.+..+-.|.|- +.. . -..|...+.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 44453 466677666666555556665 431 2 234777889999999999999999999999999999998
Q ss_pred HHhhhhcCceeEeEEeeeC-CccccccccchHHHHHHH
Q 044964 95 LECKDKYGQIVIPVFYHVE-PSNVRNQTGIFGDAFSMF 131 (163)
Q Consensus 95 ~~~~~~~~~~iiPIf~~v~-p~~v~~~~~~f~~~f~~~ 131 (163)
++ +.+.+||-|..+-. .+++..-.|.|......+
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~ 139 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDL 139 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHH
T ss_pred HH---hcCCcEEEEECCccccchhhhccccchhhHhhc
Confidence 72 34568888775422 334444344444333333
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=92.85 E-value=0.51 Score=34.52 Aligned_cols=83 Identities=11% Similarity=0.062 Sum_probs=56.3
Q ss_pred ceeeEEEecc--cccCchhHHHHHHHHHhcCCceeeecCc--ccccccCchhHHHhhhhcceEEEEEec--CCcCchhhH
Q 044964 15 VKYDVFLSFR--GEDTRDNFTSHLYAALCRKKIETFIDNQ--LIRGEDISPSLLDAIERSKISVVIFSK--GYASSGWCL 88 (163)
Q Consensus 15 ~~ydVFISys--~~D~~~~fv~~L~~~L~~~gi~vf~d~~--~~~G~~~~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~ 88 (163)
..-.+++.-. ..+....+..++...|++.|+.++.-.+ ......+.+.-.++|++|+++|++++| .-..++-+.
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTa 88 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTA 88 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHH
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHH
Confidence 3445555532 2233137889999999999999887432 112233444557899999999999997 444556688
Q ss_pred HHHHHHHHh
Q 044964 89 EELVKILEC 97 (163)
Q Consensus 89 ~El~~~~~~ 97 (163)
.|+..+...
T Consensus 89 fEiGyA~Al 97 (161)
T 2f62_A 89 FEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 899988653
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=92.25 E-value=1.7 Score=31.60 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=52.5
Q ss_pred CceeeEEEecccc-cCc-hhHHHHHHHHHhcCCceeeecCccc-----cccc-------CchhHHHhhhhcceEEEEEec
Q 044964 14 QVKYDVFLSFRGE-DTR-DNFTSHLYAALCRKKIETFIDNQLI-----RGED-------ISPSLLDAIERSKISVVIFSK 79 (163)
Q Consensus 14 ~~~ydVFISys~~-D~~-~~fv~~L~~~L~~~gi~vf~d~~~~-----~G~~-------~~~~i~~aI~~S~~~IvvlS~ 79 (163)
+++..|||+=.-. +.. .....++.+.|++.| .|+.+.... .|.. +...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3345699984322 211 225689999999999 886543222 2211 22333578999999999997
Q ss_pred CCcCchhhHHHHHHHHHh
Q 044964 80 GYASSGWCLEELVKILEC 97 (163)
Q Consensus 80 ~y~~S~wc~~El~~~~~~ 97 (163)
..+.-+..|+..+...
T Consensus 87 --~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 --QPSLGVGYELGRAVAL 102 (165)
T ss_dssp --SCCHHHHHHHHHHHHT
T ss_pred --CCCCCHHHHHHHHHHC
Confidence 5577799999998653
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=84.59 E-value=4.4 Score=29.28 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=50.7
Q ss_pred eEEEe--cccccCchhHHHHHHHHHhcCCceeeecC-c---c-cccc-------cCchhHHHhhhhcceEEEEEecCCcC
Q 044964 18 DVFLS--FRGEDTRDNFTSHLYAALCRKKIETFIDN-Q---L-IRGE-------DISPSLLDAIERSKISVVIFSKGYAS 83 (163)
Q Consensus 18 dVFIS--ys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~---~-~~G~-------~~~~~i~~aI~~S~~~IvvlS~~y~~ 83 (163)
.|||+ +++.+....+..++.+.|++.| .|+... . + ..|+ .+.+.-.++|++|+++|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 2332223467799999999999 675432 1 1 1222 245566778999999999998 55
Q ss_pred chhhHHHHHHHHHh
Q 044964 84 SGWCLEELVKILEC 97 (163)
Q Consensus 84 S~wc~~El~~~~~~ 97 (163)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 77788899998753
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=77.97 E-value=9 Score=26.94 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=40.9
Q ss_pred EEEecccccCchhHHHHHHHHHhcCCceeeecC---------c-----cc---cc-c-cCchhHHHhhhhcceEEEEEec
Q 044964 19 VFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN---------Q-----LI---RG-E-DISPSLLDAIERSKISVVIFSK 79 (163)
Q Consensus 19 VFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~---------~-----~~---~G-~-~~~~~i~~aI~~S~~~IvvlS~ 79 (163)
||||.+..|. .-+..+...|.+.|++++--. . +. -| + .-.++|...|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987763 445567778888888876211 1 11 12 1 0014788889999999999888
Q ss_pred CCc
Q 044964 80 GYA 82 (163)
Q Consensus 80 ~y~ 82 (163)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 16
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=75.73 E-value=16 Score=26.52 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcC--CceeeecC-cc----ccccc----CchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHHHhh
Q 044964 30 DNFTSHLYAALCRK--KIETFIDN-QL----IRGED----ISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECK 98 (163)
Q Consensus 30 ~~fv~~L~~~L~~~--gi~vf~d~-~~----~~G~~----~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~ 98 (163)
..+..++.++|+++ |+.+|.-. +. .++.. +.+.-.++|++|+++|.++. ....+..+..|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence 45788899999875 89888744 21 12222 33444567999999999995 344678899999998753
Q ss_pred hhcCceeEeE
Q 044964 99 DKYGQIVIPV 108 (163)
Q Consensus 99 ~~~~~~iiPI 108 (163)
+..|+.+
T Consensus 97 ---gkPVi~~ 103 (162)
T 3ehd_A 97 ---GIPVVAL 103 (162)
T ss_dssp ---TCCEEEE
T ss_pred ---CCEEEEE
Confidence 3455554
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=65.67 E-value=32 Score=24.88 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=52.7
Q ss_pred eEEEe---cccccCchhHHHHHHHHHhcC--CceeeecCc--c--------ccc--------ccCchhHHHhhhhcceEE
Q 044964 18 DVFLS---FRGEDTRDNFTSHLYAALCRK--KIETFIDNQ--L--------IRG--------EDISPSLLDAIERSKISV 74 (163)
Q Consensus 18 dVFIS---ys~~D~~~~fv~~L~~~L~~~--gi~vf~d~~--~--------~~G--------~~~~~~i~~aI~~S~~~I 74 (163)
.||+. |+..+ ..+..++.+.|++. |+.+|.-.+ . ..| ..+.+.-.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 23222 46889999999999 888876432 1 111 123445567899999999
Q ss_pred EEEecCCcCchhhHHHHHHHHHh
Q 044964 75 VIFSKGYASSGWCLEELVKILEC 97 (163)
Q Consensus 75 vvlS~~y~~S~wc~~El~~~~~~ 97 (163)
.++...-. +.-+..|+..+...
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~al 108 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAM 108 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHT
T ss_pred EECCCCCC-CCCceeehhhHhhC
Confidence 99987554 45688899988653
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=50.04 E-value=12 Score=23.38 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCceeeecC-ccc---ccccCchhHHHhhhhc
Q 044964 34 SHLYAALCRKKIETFIDN-QLI---RGEDISPSLLDAIERS 70 (163)
Q Consensus 34 ~~L~~~L~~~gi~vf~d~-~~~---~G~~~~~~i~~aI~~S 70 (163)
..|...|.+.||..|.|. .+. |-..+.+++...+.+.
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 467789999999999987 442 3345666777666543
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=47.94 E-value=21 Score=24.38 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhh
Q 044964 31 NFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAI 67 (163)
Q Consensus 31 ~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI 67 (163)
.+...|...+.+..=.+++-. .+ +.+.+.+.+.++.
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 355566666665433333332 23 2334444444444
No 20
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=44.78 E-value=13 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHHHHhhccc
Q 044964 137 GREDKLRTWRIALREAANIS 156 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~~ 156 (163)
.+.++.++|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 36899999999999998753
No 21
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=43.74 E-value=55 Score=23.26 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCc----eeeecCccc----------c---c----ccCchhHHHhhhhcceEEEEEecCCcCchhhH
Q 044964 30 DNFTSHLYAALCRKKI----ETFIDNQLI----------R---G----EDISPSLLDAIERSKISVVIFSKGYASSGWCL 88 (163)
Q Consensus 30 ~~fv~~L~~~L~~~gi----~vf~d~~~~----------~---G----~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~ 88 (163)
..+..++...|++.|. .+|.-.+-. . + ..+.+.-.++|++|+++|.++...- .+.-+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 4688999999999885 666543211 1 1 1234455678999999999998433 345688
Q ss_pred HHHHHHHHhhhhcCceeEeE
Q 044964 89 EELVKILECKDKYGQIVIPV 108 (163)
Q Consensus 89 ~El~~~~~~~~~~~~~iiPI 108 (163)
.|+..+... +..|+-+
T Consensus 97 ~EiGyA~A~----gkPVv~~ 112 (157)
T 1f8y_A 97 MELGYALSQ----GKYVLLV 112 (157)
T ss_dssp HHHHHHHHT----TCEEEEE
T ss_pred HHHHHHHHC----CCeEEEE
Confidence 899988653 3455443
No 22
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.08 E-value=21 Score=23.98 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHHHHhhccccc
Q 044964 137 GREDKLRTWRIALREAANISGF 158 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~~g~ 158 (163)
+++++.++|+.||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 3678999999999999876654
No 23
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=40.56 E-value=18 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHHhhccc
Q 044964 137 GREDKLRTWRIALREAANIS 156 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~~ 156 (163)
+++++.+.|+.||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 36899999999999998764
No 24
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=36.63 E-value=10 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=16.9
Q ss_pred EEecccccCchhHHHHHHHHHhcCC
Q 044964 20 FLSFRGEDTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 20 FISys~~D~~~~fv~~L~~~L~~~g 44 (163)
|.|||+....-.|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3455555444569999999998654
No 25
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.51 E-value=23 Score=23.02 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.+.|..||..+..+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578999999999998765
No 26
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=34.75 E-value=47 Score=27.21 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.2
Q ss_pred eeeEEEecccccCchhHHHHHHHHHhcCCceeeecC
Q 044964 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN 51 (163)
Q Consensus 16 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~ 51 (163)
.+||+|..-+.+. ...+..|...|.+.|++|-+|.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~ 366 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI 366 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEec
Confidence 3789865544443 4678899999999999998876
No 27
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.51 E-value=27 Score=22.40 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.++|+.||..+...
T Consensus 85 s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 85 SSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 678999999999988754
No 28
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=33.35 E-value=27 Score=23.30 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHHhhc
Q 044964 137 GREDKLRTWRIALREAAN 154 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~ 154 (163)
++++..++|+.||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468999999999998754
No 29
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=32.92 E-value=1.2e+02 Score=20.97 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhh-hcceEEE
Q 044964 30 DNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIE-RSKISVV 75 (163)
Q Consensus 30 ~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Iv 75 (163)
..++..+...|...|+++=+|. ..+++.+...|.++-. +.-..|+
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lV 66 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIV 66 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999997753 1226666666666543 3444443
No 30
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=32.21 E-value=12 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=18.2
Q ss_pred eeeEEEecc---------cccCchhHHHHHHHHHhcCC
Q 044964 16 KYDVFLSFR---------GEDTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 16 ~ydVFISys---------~~D~~~~fv~~L~~~L~~~g 44 (163)
.-|.+++|+ +.+..-.|+..|.+.|++.|
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 346666654 33334458888888887654
No 31
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=31.76 E-value=11 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=18.6
Q ss_pred eeeEEEecccc---------cCchhHHHHHHHHHhcCC
Q 044964 16 KYDVFLSFRGE---------DTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 16 ~ydVFISys~~---------D~~~~fv~~L~~~L~~~g 44 (163)
.-|.+++|+.. +..-.|+..|.+.|++.|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 56777777543 333458888888887643
No 32
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=29.89 E-value=1.2e+02 Score=24.05 Aligned_cols=99 Identities=12% Similarity=0.217 Sum_probs=57.4
Q ss_pred eEEEecccccC--chhHHHHHHHHHhcCCceeeecC---cccccccCchhHHHhhhhcceEEEEEecCCcCch-------
Q 044964 18 DVFLSFRGEDT--RDNFTSHLYAALCRKKIETFIDN---QLIRGEDISPSLLDAIERSKISVVIFSKGYASSG------- 85 (163)
Q Consensus 18 dVFISys~~D~--~~~fv~~L~~~L~~~gi~vf~d~---~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~------- 85 (163)
-|||-|-|-|. +.+-+..|.+.|..+|++|..=. +-+.+..+...+..++-... -|+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G-~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAG-EFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTT-CEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCC-eEEEEECCcchHHHHHHHhc
Confidence 58999987776 24688999999999999875422 33344555555555553332 3444444432221
Q ss_pred hhHH-HHHHHHH------hh-hhcCceeEeEEeeeCCccc
Q 044964 86 WCLE-ELVKILE------CK-DKYGQIVIPVFYHVEPSNV 117 (163)
Q Consensus 86 wc~~-El~~~~~------~~-~~~~~~iiPIf~~v~p~~v 117 (163)
.|.. |+...++ .+ ...+..++-+|++++|..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 2222 2222222 12 2345678888889988764
No 33
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=29.65 E-value=33 Score=22.62 Aligned_cols=19 Identities=11% Similarity=0.499 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHhhccc
Q 044964 138 REDKLRTWRIALREAANIS 156 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~~ 156 (163)
++++++.|..||..+...+
T Consensus 103 s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 103 DDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 6789999999999887653
No 34
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=29.28 E-value=58 Score=22.01 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHH
Q 044964 39 ALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVK 93 (163)
Q Consensus 39 ~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~ 93 (163)
-+.-.|+.+|.-. .-+++.+.+.+.+++ ++.|++++++.++ .+.+++..
T Consensus 16 GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~--~i~~~i~~ 64 (115)
T 3aon_B 16 PFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCAN--LVPETIER 64 (115)
T ss_dssp GGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHT--TCHHHHHH
T ss_pred HHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHH--HhHHHHHH
Confidence 4456688887432 224455566666777 9999999999876 34555554
No 35
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=29.27 E-value=36 Score=21.49 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHHHhh
Q 044964 138 REDKLRTWRIALREAA 153 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~ 153 (163)
++++.+.|..||..++
T Consensus 93 s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 93 TPKERTEWIKAIQMAS 108 (109)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6789999999999875
No 36
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=28.93 E-value=14 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=18.8
Q ss_pred eeeEEEecccc---------cCchhHHHHHHHHHhcCC
Q 044964 16 KYDVFLSFRGE---------DTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 16 ~ydVFISys~~---------D~~~~fv~~L~~~L~~~g 44 (163)
.-|.+++|+.. ...-.|+..|.+.|++.|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 46777777533 223458888888887644
No 37
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=28.81 E-value=61 Score=26.25 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=35.9
Q ss_pred eeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhh-hcceEEE
Q 044964 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIE-RSKISVV 75 (163)
Q Consensus 16 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Iv 75 (163)
.++|+|---+++ ....+..|...|.+.|++|-+|.. +..+...+..|-. +....|+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~ii 354 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLV 354 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEE
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEE
Confidence 378887654433 356889999999999999998861 2344444555433 3444443
No 38
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=28.61 E-value=77 Score=23.50 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhcCCceeeecC--cccccccCchhHHHhhhhcceEEEEEecCCc------------CchhhHHHHHHHH
Q 044964 30 DNFTSHLYAALCRKKIETFIDN--QLIRGEDISPSLLDAIERSKISVVIFSKGYA------------SSGWCLEELVKIL 95 (163)
Q Consensus 30 ~~fv~~L~~~L~~~gi~vf~d~--~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~------------~S~wc~~El~~~~ 95 (163)
..+...|..+|++..+.+++-. ++..|.-+.-+..-... ..- -.++|... -..|++.+....+
T Consensus 9 ~~~~~~l~~al~~~~~~~~~QPiv~~~~~~i~g~EaL~R~~-~~~--~~~~p~~f~~~ae~~gl~~~l~~~vl~~a~~~~ 85 (250)
T 4f3h_A 9 ERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLE-RNG--EMMSPNAFMAIAEEHDLITEIDRWVVARAIRQL 85 (250)
T ss_dssp HHHHHHHHHHTSSCCEEEEEEECEESSSCCCCEEEEEEEEE-ETT--EEECTTTTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEEcceEECCCCCEEEEEEEEEEe-CCC--cEECHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999988766 66666544322222222 111 13455532 1345555544444
Q ss_pred HhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHH
Q 044964 96 ECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133 (163)
Q Consensus 96 ~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~ 133 (163)
......+ .-++++++++|..+.+. .|...+....+
T Consensus 86 ~~~~~~~-~~~~l~iNls~~~l~~~--~~~~~l~~~l~ 120 (250)
T 4f3h_A 86 GERQRAG-HKTHLLVRIGPNSFSDP--QMIDTIREQLA 120 (250)
T ss_dssp HHHHHTT-CCCEEEEECCGGGSSCH--HHHHHHHHHHH
T ss_pred HHHHhcC-CCceEEEEeCHHHhCCc--HHHHHHHHHHH
Confidence 3322222 23488999999988653 46555555443
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=28.60 E-value=1.5e+02 Score=20.58 Aligned_cols=27 Identities=4% Similarity=0.134 Sum_probs=19.1
Q ss_pred ccc-cCchhHHHhhhhcceEEEEEecCC
Q 044964 55 RGE-DISPSLLDAIERSKISVVIFSKGY 81 (163)
Q Consensus 55 ~G~-~~~~~i~~aI~~S~~~IvvlS~~y 81 (163)
||. .+.......++.++.+|+|++..-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 553 344455566889999999999654
No 40
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=28.17 E-value=15 Score=24.47 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=18.6
Q ss_pred eeeEEEecc---------cccCchhHHHHHHHHHhcCC
Q 044964 16 KYDVFLSFR---------GEDTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 16 ~ydVFISys---------~~D~~~~fv~~L~~~L~~~g 44 (163)
.-|.+++|+ +....-.|+..|.+.|++.+
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 456666665 33333458888888887643
No 41
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=27.89 E-value=38 Score=22.10 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHHHhhc
Q 044964 137 GREDKLRTWRIALREAAN 154 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~ 154 (163)
.+++++++|..||..+..
T Consensus 84 ~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 368899999999987764
No 42
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=27.83 E-value=1e+02 Score=25.24 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=36.6
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhh-hcceEEE
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIE-RSKISVV 75 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Iv 75 (163)
...||+|..-+.+. ...+..|...|.+.||++-+|. ..+..+...+..|-. +....|+
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vi 423 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAI 423 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCEEEE
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEE
Confidence 45789998766554 4577899999999999996653 122344444545433 3444443
No 43
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=27.56 E-value=2.4e+02 Score=23.70 Aligned_cols=53 Identities=13% Similarity=0.008 Sum_probs=32.0
Q ss_pred cCchhHHHHHHHHHhcCCceee--ecC--cccccccCchhHHHhhhhcceEEEEEecCCcC
Q 044964 27 DTRDNFTSHLYAALCRKKIETF--IDN--QLIRGEDISPSLLDAIERSKISVVIFSKGYAS 83 (163)
Q Consensus 27 D~~~~fv~~L~~~L~~~gi~vf--~d~--~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~ 83 (163)
|.-..++..|+..|++.||+|. +|+ +-.+|.. +.++=..---.++|+.++-++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK----~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLEQL----YSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHH----HHHHGGGTCSEEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHH----HHHHHHcCCCEEEEECchhhh
Confidence 3335789999999999999998 554 2344443 333322222255556655443
No 44
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=27.44 E-value=70 Score=22.29 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=24.3
Q ss_pred ceEEEEEecCCcCchhhHHHHHH---HHHhhhhcCceeEeEEeeeCCc
Q 044964 71 KISVVIFSKGYASSGWCLEELVK---ILECKDKYGQIVIPVFYHVEPS 115 (163)
Q Consensus 71 ~~~IvvlS~~y~~S~wc~~El~~---~~~~~~~~~~~iiPIf~~v~p~ 115 (163)
+.+|+-|--..+ ..||..++.. +.+...+.+..|..|++.++|.
T Consensus 33 k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 455554543222 2478665544 4444444455677788887774
No 45
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=27.35 E-value=68 Score=26.73 Aligned_cols=62 Identities=8% Similarity=0.021 Sum_probs=39.2
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecC
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKG 80 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~ 80 (163)
..+||+|-.-+.+. ...+..+...|.+.|++|-+|.. +..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 34789976645443 46888999999999999988751 2334444445543333345555544
No 46
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=27.26 E-value=39 Score=21.47 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHhhc
Q 044964 138 REDKLRTWRIALREAAN 154 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~ 154 (163)
++++..+|..||..++.
T Consensus 87 s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 87 DAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 67899999999998764
No 47
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=27.20 E-value=24 Score=29.45 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=30.2
Q ss_pred eeEEEeccc-c-cCchhHHHHHHHHHhcCCceeeecC-cccccccCc
Q 044964 17 YDVFLSFRG-E-DTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDIS 60 (163)
Q Consensus 17 ydVFISys~-~-D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~ 60 (163)
++|+|---+ + +.....+..|+..|++.|+.|-+|+ +-.+|..+.
T Consensus 366 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 366 FRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp CSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHH
Confidence 678775322 1 2234688999999999999999987 444554443
No 48
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.02 E-value=41 Score=22.00 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 044964 137 GREDKLRTWRIALREAANI 155 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~ 155 (163)
.++++.++|..||..+..-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3688999999999998754
No 49
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.01 E-value=36 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHhhc
Q 044964 138 REDKLRTWRIALREAAN 154 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~ 154 (163)
++++++.|..||..+..
T Consensus 101 s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 101 DEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 68899999999998764
No 50
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=27.00 E-value=40 Score=21.80 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHhhcccc
Q 044964 138 REDKLRTWRIALREAANISG 157 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~~g 157 (163)
++++...|..||..+....+
T Consensus 93 s~~e~~~Wi~al~~a~~~~~ 112 (123)
T 1upq_A 93 TLEDLRGWLRALGRASRAEG 112 (123)
T ss_dssp SHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHhccc
Confidence 57899999999999887654
No 51
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=26.92 E-value=36 Score=22.67 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 044964 137 GREDKLRTWRIALREAANI 155 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~ 155 (163)
.+.++.++|+.||..++.-
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3578999999999988753
No 52
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=26.70 E-value=34 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhcCCcee
Q 044964 30 DNFTSHLYAALCRKKIET 47 (163)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v 47 (163)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 369999999999999998
No 53
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=26.18 E-value=43 Score=21.33 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHhh
Q 044964 137 GREDKLRTWRIALREAA 153 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~ 153 (163)
.++++.++|..||..+.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 36889999999998874
No 54
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=26.17 E-value=1.2e+02 Score=25.32 Aligned_cols=60 Identities=10% Similarity=-0.053 Sum_probs=38.5
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEe
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFS 78 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS 78 (163)
...||||..-+++. ...+-.+...|.+.|+++-++.. +.++...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 34788876655554 35678899999999999977641 23455555555554444555554
No 55
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.04 E-value=40 Score=23.69 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHhhccc
Q 044964 138 REDKLRTWRIALREAANIS 156 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~~ 156 (163)
++++.+.|+.||..|+.+.
T Consensus 97 s~ee~~eWi~aI~~v~~~~ 115 (149)
T 1x1f_A 97 NTESGEEWRGFILTVTELS 115 (149)
T ss_dssp SHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHccc
Confidence 5789999999999998764
No 56
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=26.02 E-value=44 Score=21.77 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.++|..||..++..
T Consensus 103 s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 103 TGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 678999999999988764
No 57
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=26.01 E-value=1.1e+02 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=37.1
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEe
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFS 78 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS 78 (163)
..+||||..-+.+. ...+..|...|.+.||++-+|. ..+..+...+..|-+.---.++|+-
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEEC
Confidence 45789987655443 4577899999999999996653 1223444455554333222444443
No 58
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.79 E-value=49 Score=22.49 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHHHHhhccc
Q 044964 137 GREDKLRTWRIALREAANIS 156 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~~ 156 (163)
+++++.++|+.||..+....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~ 126 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSG 126 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 36889999999999887543
No 59
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=25.73 E-value=41 Score=23.69 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 044964 137 GREDKLRTWRIALREAANI 155 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~ 155 (163)
.++++.++|+.||.++..-
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~ 122 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKN 122 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3688999999999998754
No 60
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=44 Score=21.31 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.+.|..||..+...
T Consensus 93 s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 93 SPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 578999999999988754
No 61
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=25.48 E-value=50 Score=27.57 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=31.9
Q ss_pred ccCchhHHHHHHHHHhcCCceeeecC-ccc----ccccCchhHHHhhhhcceEE
Q 044964 26 EDTRDNFTSHLYAALCRKKIETFIDN-QLI----RGEDISPSLLDAIERSKISV 74 (163)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~----~G~~~~~~i~~aI~~S~~~I 74 (163)
.|.|.+=+..|.+.|.++|+.|...+ ... .|..+.+.+.++++++++.|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 36677788899999999999876544 332 23334567888899998855
No 62
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=24.84 E-value=88 Score=23.99 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHHHhhhhcC
Q 044964 36 LYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYG 102 (163)
Q Consensus 36 L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~ 102 (163)
|...+...|.--++|-++..++.+...+.+...+...- +|+|-+..+..+-.+|+...+..+...+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~k-iI~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK-VIISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCE-EEEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCE-EEEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 33344444433345545555555555555555544444 4566666666677788888777765554
No 63
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=24.45 E-value=47 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 044964 137 GREDKLRTWRIALREAANI 155 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~~ 155 (163)
.++++.+.|..||..+...
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 3678999999999998764
No 64
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=24.18 E-value=22 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.8
Q ss_pred eeEEEecc---------cccCchhHHHHHHHHHhcCC
Q 044964 17 YDVFLSFR---------GEDTRDNFTSHLYAALCRKK 44 (163)
Q Consensus 17 ydVFISys---------~~D~~~~fv~~L~~~L~~~g 44 (163)
-|.+++|+ +....-.|+..|.+.|++.+
T Consensus 16 aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 16 ADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 56666654 33333458888888887643
No 65
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=24.14 E-value=73 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=39.9
Q ss_pred ccCchhHHHHHHHHHhcCCceeeecC-ccc-------ccccCchhHHHhhhhcceEEEEEe-cCCcC
Q 044964 26 EDTRDNFTSHLYAALCRKKIETFIDN-QLI-------RGEDISPSLLDAIERSKISVVIFS-KGYAS 83 (163)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~-------~G~~~~~~i~~aI~~S~~~IvvlS-~~y~~ 83 (163)
.|.|.+=+-.|...|.++|..|...+ ... ++-.+.+...+++++++..|++-. +.|.+
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~ 403 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRA 403 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTS
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhc
Confidence 46777888899999999999886644 331 344455567788999988666543 33444
No 66
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.03 E-value=45 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.2
Q ss_pred CChhHHHHHHHHHHHhhc
Q 044964 137 GREDKLRTWRIALREAAN 154 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~ 154 (163)
.++++...|..||..+..
T Consensus 95 ~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 357899999999998865
No 67
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=23.40 E-value=1.7e+02 Score=19.51 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=18.4
Q ss_pred cccc-CchhHHHhhhhcceEEEEEecCC
Q 044964 55 RGED-ISPSLLDAIERSKISVVIFSKGY 81 (163)
Q Consensus 55 ~G~~-~~~~i~~aI~~S~~~IvvlS~~y 81 (163)
||.. +.......++.++.+|+|++..-
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTN 96 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCC
Confidence 5543 33344556788999999999653
No 68
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.26 E-value=1.7e+02 Score=19.35 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964 38 AALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI 94 (163)
Q Consensus 38 ~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 94 (163)
.-+.-.|+.+|.-. ..+++.+.+.+.+++-++.|++++++.+. .+.+++...
T Consensus 16 ~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~ 67 (109)
T 2d00_A 16 QGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERL 67 (109)
T ss_dssp HHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHH
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHH
Confidence 44566788887432 22445556666777789999999999988 344444443
No 69
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.22 E-value=47 Score=21.62 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHhhccc
Q 044964 138 REDKLRTWRIALREAANIS 156 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~~ 156 (163)
++++.++|+.||..+....
T Consensus 88 s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 88 DAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 6789999999999876543
No 70
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=23.11 E-value=47 Score=20.77 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.0
Q ss_pred CChhHHHHHHHHHHHh
Q 044964 137 GREDKLRTWRIALREA 152 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v 152 (163)
.++++..+|..||..+
T Consensus 91 ~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 91 KDDEEMNTWIQAISSA 106 (106)
T ss_dssp SSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3688999999999753
No 71
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=23.10 E-value=53 Score=15.57 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHh
Q 044964 139 EDKLRTWRIALREA 152 (163)
Q Consensus 139 ~~~~~~W~~al~~v 152 (163)
-+.+++|+.-|.-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 37899999887643
No 72
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=51 Score=21.47 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHhh
Q 044964 138 REDKLRTWRIALREAA 153 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~ 153 (163)
++++.++|+.||..+.
T Consensus 88 s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 88 TKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5789999999999875
No 73
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=22.97 E-value=1.1e+02 Score=23.75 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcCCceeeecC--cccccccCchhHHHhhhhcceEEEEEecCCcC------------chhhHHHHHHHH
Q 044964 30 DNFTSHLYAALCRKKIETFIDN--QLIRGEDISPSLLDAIERSKISVVIFSKGYAS------------SGWCLEELVKIL 95 (163)
Q Consensus 30 ~~fv~~L~~~L~~~gi~vf~d~--~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~------------S~wc~~El~~~~ 95 (163)
..+...|..+|++..+.+++-. ++..|.-+.-+..-........ +++|..+- ..|.+++....+
T Consensus 25 ~~l~~~l~~al~~~~~~l~yQPiv~l~~g~i~g~EaL~Rw~~~~~g--~i~P~~Fi~~ae~~gli~~l~~~vl~~a~~~l 102 (294)
T 2r6o_A 25 LTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERG--LVMPSAFIPAAEDTGLIVALSDWVLEACCTQL 102 (294)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEEETTTCCEEEEEEEEEEEETTTE--EECGGGTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeceEECCCCCEEEEEEEEeeEcCCCC--EECHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999888765 5555543332211111111111 23554431 235555444433
Q ss_pred HhhhhcC--ceeEeEEeeeCCccccccccchHHHHHHHHH
Q 044964 96 ECKDKYG--QIVIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133 (163)
Q Consensus 96 ~~~~~~~--~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~ 133 (163)
......+ ..-++|+++++|..+.. ..|...+....+
T Consensus 103 ~~~~~~~~~~~~~~lsiNls~~~l~~--~~~~~~l~~~l~ 140 (294)
T 2r6o_A 103 RAWQQQGRAADDLTLSVNISTRQFEG--EHLTRAVDRALA 140 (294)
T ss_dssp HHHHHTTCSCTTCCEEEEECGGGGGG--GHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCeEEEEEeCHHHhCC--cHHHHHHHHHHH
Confidence 3322222 23478999999999875 346655555433
No 74
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=22.89 E-value=64 Score=27.25 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=37.1
Q ss_pred ccCchhHHHHHHHHHhcCCceeeecC-cc--cccccCchhHHHhhhhcceEEEEE
Q 044964 26 EDTRDNFTSHLYAALCRKKIETFIDN-QL--IRGEDISPSLLDAIERSKISVVIF 77 (163)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~vf~d~-~~--~~G~~~~~~i~~aI~~S~~~Ivvl 77 (163)
.|.|.+=+-.|...|.++|..|...+ .. .++-.+...+.+++++++..|++-
T Consensus 368 dD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t 422 (478)
T 3g79_A 368 DDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLA 422 (478)
T ss_dssp SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECS
T ss_pred cchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEec
Confidence 46787888899999999999886654 32 233334456788899998866543
No 75
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=22.70 E-value=92 Score=25.99 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=40.2
Q ss_pred ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCc-ccccccCchhHHHhhhhcceEEEEEe
Q 044964 15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQ-LIRGEDISPSLLDAIERSKISVVIFS 78 (163)
Q Consensus 15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~IvvlS 78 (163)
...||+|-.-+.+. ...+..+...|.+.|++|-+|.. -..+..+...+..|-+.---.++|+.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 34688875544432 45788999999999999988752 01256666666666544333445554
No 76
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=22.56 E-value=51 Score=20.50 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHhhc
Q 044964 138 REDKLRTWRIALREAAN 154 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~ 154 (163)
++++.+.|..||..+..
T Consensus 89 s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 89 SPAEARDWVDQISFLLK 105 (108)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 57899999999998753
No 77
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.37 E-value=51 Score=20.93 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.+.|+.||..+...
T Consensus 87 s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 87 DKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 578899999999988654
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=22.29 E-value=1.9e+02 Score=19.77 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=19.5
Q ss_pred ccc-cCchhHHHhhhhcceEEEEEecCCcC
Q 044964 55 RGE-DISPSLLDAIERSKISVVIFSKGYAS 83 (163)
Q Consensus 55 ~G~-~~~~~i~~aI~~S~~~IvvlS~~y~~ 83 (163)
||. .+.......++.++.+|+|++.+-..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD 109 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH
Confidence 553 33344456688999999999965443
No 79
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=21.76 E-value=52 Score=21.24 Aligned_cols=17 Identities=6% Similarity=0.386 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHhhc
Q 044964 138 REDKLRTWRIALREAAN 154 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~ 154 (163)
++++.++|..||..+..
T Consensus 104 s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 104 SPEEKEEWMKSIKASIS 120 (127)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 67899999999998764
No 80
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=21.75 E-value=47 Score=21.19 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.++|+.||..+..-
T Consensus 95 s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 95 DVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp SHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 578999999999987653
No 81
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=21.63 E-value=1.2e+02 Score=25.28 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=37.8
Q ss_pred cccCchhHHHHHHHHHhcC-CceeeecC-cccccccCchhHHHhhhhcceEEEEEe
Q 044964 25 GEDTRDNFTSHLYAALCRK-KIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFS 78 (163)
Q Consensus 25 ~~D~~~~fv~~L~~~L~~~-gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS 78 (163)
..|.|.+=+-.|...|.++ |..|...+ ..... .....+.+++++++..|++-.
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 3477888888999999999 99986655 44332 333566788999988665543
No 82
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=21.15 E-value=30 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHh
Q 044964 138 REDKLRTWRIALREA 152 (163)
Q Consensus 138 ~~~~~~~W~~al~~v 152 (163)
++++.+.|+.||.++
T Consensus 78 s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 78 DPDHRQQWIDAIEQH 92 (94)
T ss_dssp SSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 578899999999875
No 83
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=21.02 E-value=62 Score=22.14 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhh-HHHHHHHHHh
Q 044964 31 NFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWC-LEELVKILEC 97 (163)
Q Consensus 31 ~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc-~~El~~~~~~ 97 (163)
.-...|..+.+.+|+-+|.|.| .+|+.+...|.+.+.+++ ...+.+.+..=.-+ .+++..+++.
T Consensus 39 ~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 39 ARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp HHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHh
Confidence 3445666666777888888764 467777777777777764 33345544422221 3345555543
No 84
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=21.01 E-value=55 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHHhhc
Q 044964 137 GREDKLRTWRIALREAAN 154 (163)
Q Consensus 137 ~~~~~~~~W~~al~~v~~ 154 (163)
.++++...|..||..+..
T Consensus 93 ~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 93 ETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 367899999999998764
No 85
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=20.97 E-value=1.3e+02 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=32.2
Q ss_pred ccCchhHHHHHHHHHhcCCceeeecC-ccccccc-----CchhHHHhhhhcceEEE
Q 044964 26 EDTRDNFTSHLYAALCRKKIETFIDN-QLIRGED-----ISPSLLDAIERSKISVV 75 (163)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~-----~~~~i~~aI~~S~~~Iv 75 (163)
.|.|.+=+-.|...|.++|..|...+ -+..... +.+.+.+++++++..|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 36677788888899988898876544 4333211 12345566777777665
No 86
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=20.76 E-value=24 Score=24.04 Aligned_cols=29 Identities=7% Similarity=0.155 Sum_probs=18.8
Q ss_pred eeeEEEeccccc---------CchhHHHHHHHHHhcCC
Q 044964 16 KYDVFLSFRGED---------TRDNFTSHLYAALCRKK 44 (163)
Q Consensus 16 ~ydVFISys~~D---------~~~~fv~~L~~~L~~~g 44 (163)
.-|.+++||..+ ..-.|+..|.+.|++.+
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 467777765432 23458888888887654
No 87
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=60 Score=20.89 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHhhc
Q 044964 138 REDKLRTWRIALREAAN 154 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~ 154 (163)
++++..+|..||..+..
T Consensus 85 s~~e~~~Wi~al~~~~~ 101 (114)
T 2da0_A 85 DEQDYVAWISVLTNSKE 101 (114)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 57899999999987653
No 88
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=20.45 E-value=31 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.477 Sum_probs=25.4
Q ss_pred cCCcCchhhHHHHHHHHHhhhh-cC---ceeEeEEeeeCCccc
Q 044964 79 KGYASSGWCLEELVKILECKDK-YG---QIVIPVFYHVEPSNV 117 (163)
Q Consensus 79 ~~y~~S~wc~~El~~~~~~~~~-~~---~~iiPIf~~v~p~~v 117 (163)
..|+-.....+|+..++.|++- .+ .+|+|.-++...+.+
T Consensus 35 ssyvytaqtedeietiitcrrylagnnllrvlpmhfkfkadki 77 (135)
T 3dt5_A 35 SSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKI 77 (135)
T ss_dssp HSSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECC
T ss_pred HhHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchh
Confidence 3566667788999999988641 12 477887665444433
No 89
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.25 E-value=64 Score=20.61 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHhh
Q 044964 138 REDKLRTWRIALREAA 153 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~ 153 (163)
++++.++|+.||..+.
T Consensus 83 s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 83 KEEERNDWISILLNAL 98 (115)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5789999999999876
No 90
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.01 E-value=66 Score=20.43 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044964 138 REDKLRTWRIALREAANI 155 (163)
Q Consensus 138 ~~~~~~~W~~al~~v~~~ 155 (163)
++++.++|..||..+...
T Consensus 85 s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 85 FLEERDAWVRDINKAIKC 102 (113)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578999999999987653
No 91
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=20.00 E-value=1.7e+02 Score=21.60 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=26.3
Q ss_pred eeeEEEecccccCc--hhHHHHHHHHHhcCCceeee
Q 044964 16 KYDVFLSFRGEDTR--DNFTSHLYAALCRKKIETFI 49 (163)
Q Consensus 16 ~ydVFISys~~D~~--~~fv~~L~~~L~~~gi~vf~ 49 (163)
..-||+.|-..|.- ......+.+.|++.|+.+-+
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 45699999887752 45778899999999987744
Done!