Query 044967
Match_columns 329
No_of_seqs 173 out of 1440
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.6E-48 3.4E-53 359.5 29.7 245 39-328 67-331 (365)
2 KOG0698 Serine/threonine prote 100.0 3.9E-46 8.4E-51 342.0 30.3 262 30-329 33-306 (330)
3 PTZ00224 protein phosphatase 2 100.0 1.1E-45 2.3E-50 341.7 30.7 240 34-328 19-272 (381)
4 KOG0697 Protein phosphatase 1B 100.0 3.9E-46 8.4E-51 316.2 22.0 253 38-327 23-291 (379)
5 PF00481 PP2C: Protein phospha 100.0 3.8E-46 8.2E-51 332.1 16.1 240 39-319 2-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 2.8E-43 6.1E-48 313.1 22.5 243 37-328 8-253 (262)
7 PRK14559 putative protein seri 100.0 2.2E-38 4.8E-43 308.4 26.6 241 37-328 375-636 (645)
8 cd00143 PP2Cc Serine/threonine 100.0 1.8E-37 3.9E-42 275.6 29.5 247 38-326 2-254 (254)
9 KOG0700 Protein phosphatase 2C 100.0 1.1E-38 2.3E-43 286.5 21.6 252 49-311 83-382 (390)
10 smart00332 PP2Cc Serine/threon 100.0 5.4E-37 1.2E-41 273.0 29.6 243 38-324 7-255 (255)
11 KOG0699 Serine/threonine prote 100.0 1.7E-38 3.6E-43 278.7 19.3 164 147-328 329-504 (542)
12 KOG1323 Serine/threonine phosp 100.0 1.9E-26 4E-31 201.1 21.6 253 65-327 143-487 (493)
13 KOG1379 Serine/threonine prote 99.9 1.3E-25 2.8E-30 195.8 22.0 213 49-325 89-329 (330)
14 PF13672 PP2C_2: Protein phosp 99.9 6.9E-22 1.5E-26 171.2 16.2 184 42-289 3-194 (212)
15 KOG0618 Serine/threonine phosp 99.8 7.4E-20 1.6E-24 179.1 16.4 242 38-328 523-773 (1081)
16 smart00331 PP2C_SIG Sigma fact 99.8 2.6E-17 5.7E-22 140.4 19.1 174 48-304 14-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 4.1E-14 9E-19 142.9 22.6 194 45-326 561-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 4.2E-12 9.1E-17 108.1 21.6 181 64-327 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 2.6E-05 5.7E-10 73.2 21.2 195 50-327 161-366 (367)
20 PRK10693 response regulator of 73.9 43 0.00093 30.4 10.6 100 51-174 150-253 (303)
21 PF06972 DUF1296: Protein of u 42.4 39 0.00085 22.6 3.1 25 277-301 19-44 (60)
22 COG3700 AphA Acid phosphatase 37.0 1.3E+02 0.0029 25.2 6.1 42 265-306 73-129 (237)
23 PF09436 DUF2016: Domain of un 34.9 23 0.00051 24.7 1.3 17 261-278 26-42 (72)
24 PF01436 NHL: NHL repeat; Int 31.6 93 0.002 16.9 3.9 21 155-175 8-28 (28)
25 PF12953 DUF3842: Domain of un 27.6 50 0.0011 26.0 2.1 23 69-91 2-25 (131)
26 PRK13845 putative glycerol-3-p 26.4 3E+02 0.0065 26.5 7.4 12 67-78 322-333 (437)
27 PRK06369 nac nascent polypepti 26.0 2.7E+02 0.0059 21.4 5.9 43 248-290 39-88 (115)
28 TIGR00182 plsX fatty acid/phos 25.5 2.6E+02 0.0057 25.7 6.9 12 67-78 210-221 (322)
29 TIGR02276 beta_rpt_yvtn 40-res 24.8 1.2E+02 0.0025 17.7 3.2 19 159-177 3-21 (42)
30 TIGR00722 ttdA_fumA_fumB hydro 24.7 1.5E+02 0.0032 26.7 4.9 26 67-94 179-204 (273)
31 PF05785 CNF1: Rho-activating 23.6 85 0.0018 28.1 3.1 25 145-170 129-153 (281)
32 COG2168 DsrH Uncharacterized c 21.8 76 0.0017 23.5 2.1 32 257-289 20-51 (96)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.6e-48 Score=359.51 Aligned_cols=245 Identities=27% Similarity=0.429 Sum_probs=207.3
Q ss_pred EEEEeecCCCCCCccceEeecccC---------CCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccC
Q 044967 39 CSLYSKQGSKGLNQDAGILCQGYG---------TEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKAN 109 (329)
Q Consensus 39 ~~~~s~~G~r~~neD~~~~~~~~~---------~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~ 109 (329)
++.+|++|.|+.|||++++...+. ..+..||||||||| |..+++++++.|++.+.+...
T Consensus 67 ~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhG--G~~age~as~~l~~~i~~~~~---------- 134 (365)
T PLN03145 67 SGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHG--GKHAADFACYHLPRFIVEDED---------- 134 (365)
T ss_pred EEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhc----------
Confidence 789999999999999998765432 12348999999999 999999999999998865321
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHhccC-CCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEc
Q 044967 110 GEVMMPSIDFYKWQEACVKAFKVMDKEVKLQEN-LDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQL 188 (329)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~l 188 (329)
....++++|.++|..+++.+..... .....+|||++++++.++++|++||||||+|+++. |.+ ++|
T Consensus 135 --------~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~---g~~--~~L 201 (365)
T PLN03145 135 --------FPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRR---GKA--IEM 201 (365)
T ss_pred --------cchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcC---CeE--EEe
Confidence 1245778899999999999875432 22346999999999999999999999999999998 855 999
Q ss_pred CCCCCCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccC------CceeccceEEEEcCCC
Q 044967 189 TTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNH------GIIAIPDVSYRRLTSN 262 (329)
Q Consensus 189 t~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~------~~~~~p~i~~~~l~~~ 262 (329)
|.||+|..+.|+.||.+.||.+.. .+..+.+++||+|||+.+|.. +++++|++..+++.++
T Consensus 202 T~DH~~~~~~E~~RI~~~Gg~v~~-------------g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~ 268 (365)
T PLN03145 202 SRDHKPMCSKERKRIEASGGYVYD-------------GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEE 268 (365)
T ss_pred cCCCCCCCHHHHHHHHHcCCceec-------------ceECCccccccccccccccccccccCCCcceEEEEEEEECCCC
Confidence 999999999999999999998852 222455679999999887653 3789999999999999
Q ss_pred CeEEEEEcCCCCCCCChHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 263 DQFILLATDGVLDVLSSNQVATIVWE----ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 263 d~flll~SDGl~d~l~~~ei~~iv~~----~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
|.|||||||||||+|++++++++++. ..+++++|+.|++.|+.+ ++.||||||||+|+.
T Consensus 269 D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~r-------gs~DNITvIVV~l~~ 331 (365)
T PLN03145 269 DEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKR-------KSGDNLAVVVVCFQS 331 (365)
T ss_pred CEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CCCCCEEEEEEEeec
Confidence 99999999999999999998777643 458999999999999999 999999999999985
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-46 Score=342.04 Aligned_cols=262 Identities=35% Similarity=0.486 Sum_probs=225.8
Q ss_pred EeeCCccceEEEEeecCCCCCCccceEeecccC-----CC-CceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccc
Q 044967 30 IVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYG-----TE-DGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSN 103 (329)
Q Consensus 30 ~~~~~~~~~~~~~s~~G~r~~neD~~~~~~~~~-----~~-~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~ 103 (329)
..........+.++.+|+|..|||++.....+. +. ...+|||||||| |..+|+|+.++|+..+.+.+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHG--G~~~A~~~~~~L~~~l~~~~~~~-- 108 (330)
T KOG0698|consen 33 LSINESYRLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHG--GDLAAKFAAKHLHKNLLEQLAFP-- 108 (330)
T ss_pred ccccccccceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhhcc--
Confidence 345566667888899999999999999877643 23 469999999999 99999999999999999888764
Q ss_pred cccccCccCCCCCcchHHHHHHHHHHHH-HHHHHHHhccCCCccCCCceEEEEEEeCC-EEEEEEcCCceEEEEEEccCC
Q 044967 104 SNVKANGEVMMPSIDFYKWQEACVKAFK-VMDKEVKLQENLDCFCSGTTAVVVIRQGE-DLVIANLGDSRAVLGTVSDNG 181 (329)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~~~GtT~~~~~i~~~-~l~~anvGDSr~~l~~~~~~g 181 (329)
.....++.++.++|. +++..+... ......+|||++++++.++ ++|+||+||||++|++. |
T Consensus 109 -------------~~~~~~~~a~~~~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~---~ 171 (330)
T KOG0698|consen 109 -------------KDRQDVKDALRRAFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRK---G 171 (330)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecC---C
Confidence 222568999999999 699999865 2223578888888888755 99999999999999987 4
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCC
Q 044967 182 ELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTS 261 (329)
Q Consensus 182 ~l~~~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~ 261 (329)
. .+++||.||+|+.+.|+.||.++||.+..... ..|+ .+.|+++|+|||..+|..+++++|++....+.+
T Consensus 172 ~-~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~---~~Rv------~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~ 241 (330)
T KOG0698|consen 172 G-VAVQLSVDHKPDREDERERIEAAGGRVSNWGG---VWRV------NGVLAVSRAFGDVELKSQGVIAEPEIQQVKINS 241 (330)
T ss_pred C-eeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCC---cceE------eceEEEeeecCCHHhcCCcEecCCceEEEEcCC
Confidence 3 67999999999999999999999999985322 3344 468999999999999987799999999999999
Q ss_pred CCeEEEEEcCCCCCCCChHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeCC
Q 044967 262 NDQFILLATDGVLDVLSSNQVATIVWE----ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR 329 (329)
Q Consensus 262 ~d~flll~SDGl~d~l~~~ei~~iv~~----~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~~ 329 (329)
.|+||||+||||||.++++|++++++. ...+..++..|...|..+ ++.||||||||.|.+.
T Consensus 242 ~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~-------~s~DnitvvvV~l~~~ 306 (330)
T KOG0698|consen 242 DDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSR-------GSKDNITVVVVRLKSS 306 (330)
T ss_pred CCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhc-------CCCCCeEEEEEEecCc
Confidence 999999999999999999999999998 448899999999999999 9999999999999763
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.1e-45 Score=341.73 Aligned_cols=240 Identities=32% Similarity=0.440 Sum_probs=200.2
Q ss_pred CccceEEEEeecCCCCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCC
Q 044967 34 GVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVM 113 (329)
Q Consensus 34 ~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~ 113 (329)
+....++..|++|+|+.|||++++... ++..+|||||||| |..+|+++++.|...+.+....
T Consensus 19 ~~~~~~g~~s~~G~R~~nED~~~v~~~---~~~~lfgVfDGHg--G~~~S~~~~~~l~~~l~~~~~~------------- 80 (381)
T PTZ00224 19 NSIFRCASACVNGYRESMEDAHLLYLT---DDWGFFGVFDGHV--NDECSQYLARAWPQALEKEPEP------------- 80 (381)
T ss_pred CccEEEEEEeCCCCCCCCCCeeEeccC---CCceEEEEEeCCC--cHHHHHHHHHHHHHHHHhcccc-------------
Confidence 334448999999999999999876543 4457999999999 8899999999998876533211
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccCCCccCCCceEEEEEEe-CCEEEEEEcCCceEEEEEEccCCceEEEEcCCCC
Q 044967 114 MPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQ-GEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDL 192 (329)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~-~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh 192 (329)
...+.|.+++..+|+.+.+.. ..+|||++++++. +.++|++||||||+|+++. |++ ++||.||
T Consensus 81 -------~~~~~l~~a~~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~---g~~--~~LT~DH 144 (381)
T PTZ00224 81 -------MTDERMEELCLEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRD---GKL--VFATEDH 144 (381)
T ss_pred -------ccHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcccceEEEEEC---CEE--EEcccCC
Confidence 012347888999999988543 2469999988876 5799999999999999998 855 9999999
Q ss_pred CCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCC--------ceeccceEEEEcCCCCe
Q 044967 193 KPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHG--------IIAIPDVSYRRLTSNDQ 264 (329)
Q Consensus 193 ~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~--------~~~~p~i~~~~l~~~d~ 264 (329)
+|.++.|+.||...+|.+. +.|..+.+.+||+||+..+|..+ ++++|++..+.+.++|
T Consensus 145 ~~~~~~E~~RI~~~gg~v~-------------~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D- 210 (381)
T PTZ00224 145 KPNNPGERQRIEACGGRVV-------------SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND- 210 (381)
T ss_pred CCCCHHHHhHHHHccCEec-------------cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-
Confidence 9999999999999988875 34445668899999998766543 5689999999999887
Q ss_pred EEEEEcCCCCC-CCChHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 265 FILLATDGVLD-VLSSNQVATIVWE----ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 265 flll~SDGl~d-~l~~~ei~~iv~~----~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
||||||||||| .++++|+.+++.. ..+++.+|+.|++.|+.+ |+.||||||||+|..
T Consensus 211 ~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~r-------Gs~DNITvIvV~~~~ 272 (381)
T PTZ00224 211 FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRR-------GSKDNISCLIVQLKD 272 (381)
T ss_pred EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCCEEEEEEEeeC
Confidence 89999999999 7999999999874 358899999999999999 999999999999975
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-46 Score=316.24 Aligned_cols=253 Identities=30% Similarity=0.399 Sum_probs=219.0
Q ss_pred eEEEEeecCCCCCCccceEeecccCC--CCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCC
Q 044967 38 LCSLYSKQGSKGLNQDAGILCQGYGT--EDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMP 115 (329)
Q Consensus 38 ~~~~~s~~G~r~~neD~~~~~~~~~~--~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (329)
.|++.|++|||-.|||++.....+.. +++.||||||||. |.+.|.+++++|..++....... ....
T Consensus 23 ryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHA--Gs~va~~c~~hLlehi~sse~F~---~~~k------- 90 (379)
T KOG0697|consen 23 RYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHA--GSQVANHCAEHLLEHIISSEEFR---GMTK------- 90 (379)
T ss_pred eeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCcc--chHHHHHHHHHHHHHhhhhHHHh---hhcc-------
Confidence 48999999999999999987665543 6779999999999 99999999999999987655432 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcc--CCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCC
Q 044967 116 SIDFYKWQEACVKAFKVMDKEVKLQE--NLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLK 193 (329)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~ 193 (329)
....++++..++..|.++++...... .....++|||++.+++...++|++|+||||++|+|+ | .++.-|+||+
T Consensus 91 ~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rn---g--~~~f~TqDHK 165 (379)
T KOG0697|consen 91 NGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRN---G--EVVFSTQDHK 165 (379)
T ss_pred CCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecC---C--ceEEeccCCC
Confidence 13457889999999999999887432 233456999999999999999999999999999999 8 4589999999
Q ss_pred CCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCC--------ceeccceEEEEcCCCCeE
Q 044967 194 PSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHG--------IIAIPDVSYRRLTSNDQF 265 (329)
Q Consensus 194 ~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~--------~~~~p~i~~~~l~~~d~f 265 (329)
|.+|.|+.||+++||.+. -.|.++.|+++|+|||+.+|..+ ++++|++....-...|+|
T Consensus 166 P~~p~EkeRIqnAGGSVM-------------IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeF 232 (379)
T KOG0697|consen 166 PYLPKEKERIQNAGGSVM-------------IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEF 232 (379)
T ss_pred CCChHHHHHHhcCCCeEE-------------EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcE
Confidence 999999999999999997 23447889999999999999864 789999999888887889
Q ss_pred EEEEcCCCCCCCChHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEee
Q 044967 266 ILLATDGVLDVLSSNQVATIVWEA----DNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQ 327 (329)
Q Consensus 266 lll~SDGl~d~l~~~ei~~iv~~~----~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~ 327 (329)
|||++||+||.++++|++++++.. .+..++|+.+++.++.+ |+.||+|+|+|.|-
T Consensus 233 ivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhK-------GSRDNMsivlvcfp 291 (379)
T KOG0697|consen 233 IVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHK-------GSRDNMSIVLVCFP 291 (379)
T ss_pred EEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhc-------cCccCceEEEEecC
Confidence 999999999999999999999875 37899999999999999 99999999999884
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.8e-46 Score=332.05 Aligned_cols=240 Identities=40% Similarity=0.540 Sum_probs=198.9
Q ss_pred EEEEeecCCCCCCccceEeecccC----CCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCC
Q 044967 39 CSLYSKQGSKGLNQDAGILCQGYG----TEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMM 114 (329)
Q Consensus 39 ~~~~s~~G~r~~neD~~~~~~~~~----~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 114 (329)
+++.+.+|.|..|||++++...+. .....+|+|||||| |..+|.++.+.++..+.+.....
T Consensus 2 ~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhg--G~~~a~~~~~~l~~~l~~~~~~~------------- 66 (254)
T PF00481_consen 2 YGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHG--GSEAAEYASQNLPEFLKENLSFN------------- 66 (254)
T ss_dssp EEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCC--ChhhHHHHHHHHHHHHHhhcccc-------------
Confidence 678899999999999999988663 24459999999999 99999999999998888777652
Q ss_pred CCcchHHHHHHHHHHHHH-HHHHHHhccCC-CccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCC
Q 044967 115 PSIDFYKWQEACVKAFKV-MDKEVKLQENL-DCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDL 192 (329)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~-~~~~i~~~~~~-~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh 192 (329)
....+.++|..+|.. ++..+...... ....+|||++++++.++++|+|||||||+||++. +... ++||.||
T Consensus 67 ---~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~---~~~~-~~Lt~dH 139 (254)
T PF00481_consen 67 ---DGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRN---GGII-KQLTRDH 139 (254)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEET---TEEE-EESS---
T ss_pred ---cccchhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeec---cccc-ccccccc
Confidence 222788999999999 88888763211 5578999999999999999999999999999999 6441 4999999
Q ss_pred CCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCcc---CCceeccceEEEEcCCCCeEEEEE
Q 044967 193 KPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKN---HGIIAIPDVSYRRLTSNDQFILLA 269 (329)
Q Consensus 193 ~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~---~~~~~~p~i~~~~l~~~d~flll~ 269 (329)
+|+++.|+.||++.||.+.. . .|..+.|++||+|||..+|. .+++++|++..+++.++|.|||||
T Consensus 140 ~~~~~~E~~RI~~~gg~v~~------~------~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvla 207 (254)
T PF00481_consen 140 KPSNPDERERIRKAGGRVSE------N------GRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLA 207 (254)
T ss_dssp STTSHHHHHHHHHTT-GEEE------T------EEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE
T ss_pred ccchhhccceeecccccccc------c------hhhhhccccccccccccccccccceeeeecccccccccccceEEEEE
Confidence 99999999999999999973 2 22245688999999999999 779999999999999998899999
Q ss_pred cCCCCCCCChHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhhCCCCCCCce
Q 044967 270 TDGVLDVLSSNQVATIVWEADN----KQEAARKVVEAANAAWKKKFPSSKMDDC 319 (329)
Q Consensus 270 SDGl~d~l~~~ei~~iv~~~~~----~~~~a~~Lv~~A~~~~~~~~~~g~~Dni 319 (329)
||||||+|+++|+.++++...+ |+.+|+.|++.|+.+ |+.|||
T Consensus 208 SDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~-------gs~DNi 254 (254)
T PF00481_consen 208 SDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIAR-------GSKDNI 254 (254)
T ss_dssp -HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHT-------THHSHE
T ss_pred cccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------CCCCCC
Confidence 9999999999999999988765 899999999999999 999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-43 Score=313.09 Aligned_cols=243 Identities=29% Similarity=0.325 Sum_probs=189.9
Q ss_pred ceEEEEeecCC-CCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCC
Q 044967 37 KLCSLYSKQGS-KGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMP 115 (329)
Q Consensus 37 ~~~~~~s~~G~-r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (329)
..++..|+.|. |..|||++++.....+....||+||||||| +.++++|++.+.+.+.+........
T Consensus 8 ~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GG--h~~ge~aS~~~v~~l~~~~~~~~~~----------- 74 (262)
T COG0631 8 LKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGG--HAAGEVASKLAVEALARLFDETNFN----------- 74 (262)
T ss_pred eeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccc--hhHHHHHHHHHHHHHHHHHHhcccc-----------
Confidence 34677788888 888999999987432211479999999994 4555555555555554444331000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcc--CCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCC
Q 044967 116 SIDFYKWQEACVKAFKVMDKEVKLQE--NLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLK 193 (329)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~ 193 (329)
.....+.+.+.+++..++..+.... ......+|||++++++.++++|+|||||||+|++++ |.+ +|||.||+
T Consensus 75 -~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~---~~~--~~lT~DH~ 148 (262)
T COG0631 75 -SLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRD---GEL--KQLTEDHS 148 (262)
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcC---Cce--EEeccCCc
Confidence 0011168889999999999998654 345689999999999999999999999999999999 855 99999997
Q ss_pred CCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCC
Q 044967 194 PSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGV 273 (329)
Q Consensus 194 ~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl 273 (329)
+.+..+..++...++... + |.++ ++||+||+. ...+|++....+.+++ |+|||||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~--------~----~~~~----~ltralG~~------~~~~p~~~~~~~~~~d-~llL~SDGl 205 (262)
T COG0631 149 LVNRLEQRGIITPEEARS--------H----PRRN----ALTRALGDF------DLLEPDITELELEPGD-FLLLCSDGL 205 (262)
T ss_pred HHHHHHHhcCCCHHHHHh--------C----ccch----hhhhhcCCC------cccceeEEEEEcCCCC-EEEEECCCC
Confidence 776666665433222221 1 4444 499999997 3489999999999995 899999999
Q ss_pred CCCCChHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 274 LDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 274 ~d~l~~~ei~~iv~~~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
||.+++++|.++++...+++++++.|++.|+.. ++.||+|+++|.+..
T Consensus 206 ~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~-------g~~DNiT~ilv~~~~ 253 (262)
T COG0631 206 WDVVSDDEIVDILKNSETPQEAADKLIELALEG-------GGPDNITVVLVRLNG 253 (262)
T ss_pred ccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCceEEEEEEeec
Confidence 999999999999998789999999999999999 999999999999763
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.2e-38 Score=308.39 Aligned_cols=241 Identities=21% Similarity=0.249 Sum_probs=181.1
Q ss_pred ceEEEEeecCC-CCCCccceEeecccC---C------CCceEEEEeeCCCCC--cHHHHHHHHHHhHHHHHHHHhhcccc
Q 044967 37 KLCSLYSKQGS-KGLNQDAGILCQGYG---T------EDGEFCGVFDGHGKH--GHVVSELVRNRLPSLILSQKNALSNS 104 (329)
Q Consensus 37 ~~~~~~s~~G~-r~~neD~~~~~~~~~---~------~~~~l~~V~DG~Gg~--G~~as~~a~~~l~~~l~~~~~~~~~~ 104 (329)
-.++..|+.|. |+.|||++.+..... . ....+|+|||||||+ |+.||+++++.|.+.+.+....
T Consensus 375 l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~---- 450 (645)
T PRK14559 375 LEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQD---- 450 (645)
T ss_pred EEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcc----
Confidence 34789999998 899999987754311 0 124699999999998 9999999999999888754331
Q ss_pred ccccCccCCCCCcchHHHHHHHHHHHHHHHHHHHhcc----CCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccC
Q 044967 105 NVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQE----NLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDN 180 (329)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~----~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~ 180 (329)
. ....+.+.+++..+|+.+.+.. ......+|||++++++.++++|++||||||+|++++ +
T Consensus 451 ------------~--~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r--~ 514 (645)
T PRK14559 451 ------------E--LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTR--K 514 (645)
T ss_pred ------------c--ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEec--C
Confidence 0 1124568888888898887432 123457999999999999999999999999999864 3
Q ss_pred CceEEEEcCCCCCCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcC
Q 044967 181 GELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLT 260 (329)
Q Consensus 181 g~l~~~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~ 260 (329)
|++ +|||.||++. .+..+ . | +.. ..+..+ +++ ..+||+||+...+ ..+|++..+.+.
T Consensus 515 g~l--~QLT~DHs~~--~~lv~---~-G-i~~--~~a~~~----p~~----~~LTrALG~~~~~----~l~Pdi~~~~L~ 571 (645)
T PRK14559 515 GGL--EQLTVDHEVG--QREIQ---R-G-VEP--QIAYAR----PDA----YQLTQALGPRDNS----AIQPDIQFLEIE 571 (645)
T ss_pred CeE--EEeCCCCCHH--HHHHH---h-C-CCH--HHHhcC----ccc----ceeeeccCCCCCC----cccceEEEEEcC
Confidence 655 9999999543 32222 1 3 221 111111 333 3499999986433 258999999999
Q ss_pred CCCeEEEEEcCCCCCC--CCh---HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 261 SNDQFILLATDGVLDV--LSS---NQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 261 ~~d~flll~SDGl~d~--l~~---~ei~~iv~~~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
++| ++|||||||||+ +.. +++..++....+++++++.|++.|+.+ |+.||||+|||+++.
T Consensus 572 ~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~-------gg~DNITvIvV~l~~ 636 (645)
T PRK14559 572 EDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQY-------NGHDNITAILVRLKV 636 (645)
T ss_pred CCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCCcEEEEEEEecc
Confidence 877 689999999994 444 455677777778999999999999999 999999999999874
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.8e-37 Score=275.58 Aligned_cols=247 Identities=41% Similarity=0.554 Sum_probs=200.2
Q ss_pred eEEEEeecCCCCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCc
Q 044967 38 LCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSI 117 (329)
Q Consensus 38 ~~~~~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
.++..+..|.|+.|||++++.......+..+|+|||||| |...++++++.+.+.+.+...... ..
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~~~-------------~~ 66 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHG--GHAAGEFASKLLVEELLEELEETL-------------TL 66 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCC--hHHHHHHHHHHHHHHHHHHHhhcc-------------cc
Confidence 367778888899999999987653212568999999999 666666666666666665554320 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccC--CCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCC
Q 044967 118 DFYKWQEACVKAFKVMDKEVKLQEN--LDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPS 195 (329)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~ 195 (329)
....+...|.++|+.+++.+..... .....+|||++++++.+++++++|+||||+|++++ +++ +++|.||++.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~---~~~--~~lt~dh~~~ 141 (254)
T cd00143 67 SEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRN---GEA--VQLTKDHKPV 141 (254)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcC---Cce--eEcCCCCCCc
Confidence 2467788899999999999985542 24567899999999999999999999999999999 766 9999999998
Q ss_pred ChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEc-CCCCeEEEEEcCCCC
Q 044967 196 LPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRL-TSNDQFILLATDGVL 274 (329)
Q Consensus 196 ~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l-~~~d~flll~SDGl~ 274 (329)
.+.+..|+...+|.+.. .+ .+.+ ..+||+||+...|.. ...+|++..+.+ .++| +|||||||||
T Consensus 142 ~~~~~~~i~~~~~~~~~-------~~--~~~~----~~~t~~lG~~~~~~~-~~~~~~~~~~~l~~~~d-~ill~SDG~~ 206 (254)
T cd00143 142 NEEERERIEKAGGRVSN-------GR--VPGV----LAVTRALGDFDLKPG-VSAEPDVTVVKLTEDDD-FLILASDGLW 206 (254)
T ss_pred ChHHHHHHHHcCCcEEe-------CE--EcCc----eeeccccCCccccCC-EEcCCeEEEEEeCCCCc-EEEEECCCCe
Confidence 88999999888776430 00 0223 349999999877743 788999999999 6766 6899999999
Q ss_pred CCCChHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEe
Q 044967 275 DVLSSNQVATIVWEAD---NKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFL 326 (329)
Q Consensus 275 d~l~~~ei~~iv~~~~---~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~ 326 (329)
+++++++|.+++.... +++++|+.|++.|... +..||+|+|+++|
T Consensus 207 ~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~-------~~~Dn~t~i~~~~ 254 (254)
T cd00143 207 DVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRR-------GSHDNITVVVVRL 254 (254)
T ss_pred eccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhC-------CCCCCEEEEEEeC
Confidence 9999999999998887 7999999999999999 9999999999975
No 9
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-38 Score=286.52 Aligned_cols=252 Identities=31% Similarity=0.376 Sum_probs=198.0
Q ss_pred CCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccC-cc--------------CC
Q 044967 49 GLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKAN-GE--------------VM 113 (329)
Q Consensus 49 ~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~-~~--------------~~ 113 (329)
+.-||+.-+..... +.+.|+||||||| |..||+|+.++|..++...+........... .+ ..
T Consensus 83 ~~~edrv~~~~s~~-~~~~fvGIyDGhg--Gp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~ 159 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEE-NGWLFVGIYDGHG--GPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQL 159 (390)
T ss_pred CcccCcceeeeecc-CCeEEEEEecCCC--CccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcc
Confidence 44567766554433 6679999999999 9999999999999999977665432221100 00 00
Q ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHHhc------cCCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCc-eEE
Q 044967 114 MPSID-FYKWQEACVKAFKVMDKEVKLQ------ENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGE-LKA 185 (329)
Q Consensus 114 ~~~~~-~~~~~~~l~~~~~~~~~~i~~~------~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~-l~~ 185 (329)
...+. ...+.++|.+||.++++.+... ..+.-..+|+|+++.++.++.+||||+|||||+|.+..++|. +.+
T Consensus 160 ~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A 239 (390)
T KOG0700|consen 160 SSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVA 239 (390)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEE
Confidence 00112 4678999999999999999722 234457899999999999999999999999999999877777 799
Q ss_pred EEcCCCCCCCChhHHHHHHHhCCeEEecccCCccceeee-cCCCCCceecccccCCCCCccCC-----------------
Q 044967 186 VQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWL-PHEDTPGLAMSRAFGDFLLKNHG----------------- 247 (329)
Q Consensus 186 ~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~-~~~~~~~l~~trslGd~~~k~~~----------------- 247 (329)
+|||.||+.+++.|+.||+..+-. ..+.+.. ..|..|.|.+||||||..+|...
T Consensus 240 ~qLS~dHn~~ne~Ev~Rir~eHPd--------d~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t 311 (390)
T KOG0700|consen 240 VQLSTDHNASNEDEVRRIRSEHPD--------DPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGT 311 (390)
T ss_pred EecChhhccccHHHHHHHHHhCCC--------CcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCC
Confidence 999999999999999999875421 1122211 13667889999999999988832
Q ss_pred ---ceeccceEEEEcCCCCeEEEEEcCCCCCCCChHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhhC
Q 044967 248 ---IIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEA----DNKQEAARKVVEAANAAWKKKF 311 (329)
Q Consensus 248 ---~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~ei~~iv~~~----~~~~~~a~~Lv~~A~~~~~~~~ 311 (329)
++++|++..++|.+.|+||||+|||||++|+++|++.++... ...+.+|+.|+++|+.+..+|.
T Consensus 312 ~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aakk~ 382 (390)
T KOG0700|consen 312 PPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAAKKR 382 (390)
T ss_pred CCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhhhhc
Confidence 789999999999999999999999999999999999999874 2457899999999999966543
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.4e-37 Score=272.99 Aligned_cols=243 Identities=38% Similarity=0.533 Sum_probs=202.5
Q ss_pred eEEEEeecCCCCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCc
Q 044967 38 LCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSI 117 (329)
Q Consensus 38 ~~~~~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
.++..+..|.|..|||++++...+. ....+|+|||||| |..+|+++++.+.+.+.+...... .
T Consensus 7 ~~~~~~~~~~r~~neD~~~~~~~~~-~~~~~~~v~DG~g--g~~~~~~~~~~~~~~~~~~~~~~~--------------~ 69 (255)
T smart00332 7 RYGLSSMQGVRKPMEDAHVITPDLS-DSGAFFGVFDGHG--GSEAAKFLSKNLPEILAEELIKHK--------------D 69 (255)
T ss_pred eEEEecCCCCCCCCcceEEEeccCC-CCeEEEEEEeCCC--cHHHHHHHHHHHHHHHHHhHhhcc--------------c
Confidence 3556677888999999999876432 4568999999999 999999999999998877655320 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCC--CccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCC
Q 044967 118 DFYKWQEACVKAFKVMDKEVKLQENL--DCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPS 195 (329)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~ 195 (329)
....+...|.+++..+++.+...... ....+|||++++++..+++|++|+||||+|+++. +++ .++|.||++.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~---~~~--~~lt~dh~~~ 144 (255)
T smart00332 70 ELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRN---GKA--VQLTEDHKPS 144 (255)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeC---Cce--eEcCCCCCCc
Confidence 22467888999999999999855332 2357899999999999999999999999999998 766 9999999999
Q ss_pred ChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEc-CCCCeEEEEEcCCCC
Q 044967 196 LPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRL-TSNDQFILLATDGVL 274 (329)
Q Consensus 196 ~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l-~~~d~flll~SDGl~ 274 (329)
...|..+|...++.+.. ++..+...+||++|+...|.. +..+|++...++ .++| +|||||||||
T Consensus 145 ~~~~~~~i~~~~~~~~~-------------~~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d-~ill~SDGv~ 209 (255)
T smart00332 145 NEDERARIEAAGGFVIN-------------GRVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDD-FLILASDGLW 209 (255)
T ss_pred CHHHHHHHHHcCCEEEC-------------CeECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCc-EEEEECCccc
Confidence 99999999988887641 122233459999999877754 789999999996 6666 7899999999
Q ss_pred CCCChHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEE
Q 044967 275 DVLSSNQVATIVWEAD---NKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCL 324 (329)
Q Consensus 275 d~l~~~ei~~iv~~~~---~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv 324 (329)
++++++++.+++.... ++.++|+.|++.|..+ +..||+|+|||
T Consensus 210 ~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~-------~~~Dn~T~ivv 255 (255)
T smart00332 210 DVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALAR-------GSKDNITVIVV 255 (255)
T ss_pred cCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHc-------CCCCCeEEEEC
Confidence 9999999999998776 5999999999999999 99999999985
No 11
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-38 Score=278.72 Aligned_cols=164 Identities=36% Similarity=0.518 Sum_probs=143.3
Q ss_pred CCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHHHHHhCCeEEecccCCccceeeecC
Q 044967 147 CSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPH 226 (329)
Q Consensus 147 ~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~ 226 (329)
.+|||+++|++.+++|||||.||||++++|. | +++-++.||+|....|..||.++||+++- .+
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~---G--kAvdmS~DHKPEDevE~~RI~~AGG~vtl------------DG 391 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRN---G--KAVDMSVDHKPEDEVETNRIHAAGGQVTL------------DG 391 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecC---C--ceeecccCCCcccHHHHHHHHhcCCeEee------------cc
Confidence 6799999999999999999999999999999 8 77999999999999999999999999973 56
Q ss_pred CCCCceecccccCCCCCccCC--------ceeccceEEEEcCCCCeEEEEEcCCCCCCCChHHHHHHHHhcC----CHHH
Q 044967 227 EDTPGLAMSRAFGDFLLKNHG--------IIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEAD----NKQE 294 (329)
Q Consensus 227 ~~~~~l~~trslGd~~~k~~~--------~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~ei~~iv~~~~----~~~~ 294 (329)
|.+++|+++|+|||..+|..- +++-|+|+...|.+.|.|+|+++||||++++.++++++++... ....
T Consensus 392 RVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ 471 (542)
T KOG0699|consen 392 RVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSE 471 (542)
T ss_pred eecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHH
Confidence 778999999999999988732 6899999999999999999999999999999999999997643 4567
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 295 AARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 295 ~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
+++.|++.++.-.-.-. |..-||+|||++.|++
T Consensus 472 iceeL~D~CLAp~T~GD-GTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 472 ICEELCDACLAPSTDGD-GTGCDNMTVIITTFKR 504 (542)
T ss_pred HHHHHHHhhcCCCCCCC-CcCCCcceEEEEEecc
Confidence 77777777776511111 3557999999999975
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-26 Score=201.07 Aligned_cols=253 Identities=29% Similarity=0.354 Sum_probs=176.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhcccc--------------ccccCccC--------CCCCcchHHH
Q 044967 65 DGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNS--------------NVKANGEV--------MMPSIDFYKW 122 (329)
Q Consensus 65 ~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~--------------~~~~~~~~--------~~~~~~~~~~ 122 (329)
++.+|.+||||. |..+|-.|...+..++.+.+...-.. .....+.+ -.....+.-+
T Consensus 143 ~~~~~slfdgha--gs~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 143 DGALFSLFDGHA--GSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred cceeeeeecCCC--cchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 458999999999 66677777766666666555422100 00000000 0122344567
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHH
Q 044967 123 QEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAER 202 (329)
Q Consensus 123 ~~~l~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~r 202 (329)
..+|+.||+.+++.|.+....-...+|||+++++.--+++|++|.||||+.++|+ +++ ++|+.+.+|. .|++|
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrn---dei--rplS~efTPe--tERqR 293 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRN---DEI--RPLSKEFTPE--TERQR 293 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEec---CCe--eecccccCcH--HHHHH
Confidence 7899999999999999777666778999999999999999999999999999999 877 9999999665 56666
Q ss_pred HHHhC--------CeEEecccCCc-------cceeee----------------------------cCCCCCceecccccC
Q 044967 203 IKQCR--------GRVLALKEEPH-------IQRVWL----------------------------PHEDTPGLAMSRAFG 239 (329)
Q Consensus 203 i~~~~--------g~i~~~~~~~~-------~~~~~~----------------------------~~~~~~~l~~trslG 239 (329)
++..+ +..+. .+.+. -+++.+ +.|....+.+||.||
T Consensus 294 lQ~Laf~~PeLlgneFtr-LEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlG 372 (493)
T KOG1323|consen 294 LQELAFRNPELLGNEFTR-LEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLG 372 (493)
T ss_pred HHHHhhcChHhhcccccc-eecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccC
Confidence 65542 22221 11110 011111 234455678999999
Q ss_pred CCCCccCC--------ceeccceEEEEcCC----CCeEEEEEcCCCCCCCChHHHHHHHHhcC------CH---HHHHHH
Q 044967 240 DFLLKNHG--------IIAIPDVSYRRLTS----NDQFILLATDGVLDVLSSNQVATIVWEAD------NK---QEAARK 298 (329)
Q Consensus 240 d~~~k~~~--------~~~~p~i~~~~l~~----~d~flll~SDGl~d~l~~~ei~~iv~~~~------~~---~~~a~~ 298 (329)
|..+|... ..+.|++.+.++.+ .|+.+||+||||||+++++|+..+++... +| ..+|+.
T Consensus 373 DH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqd 452 (493)
T KOG1323|consen 373 DHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQD 452 (493)
T ss_pred cceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHH
Confidence 98876532 67899999988864 35589999999999999999999998753 33 367777
Q ss_pred HHHHHHHHHHhh------CCCCCCCceEEEEEEee
Q 044967 299 VVEAANAAWKKK------FPSSKMDDCTVVCLFLQ 327 (329)
Q Consensus 299 Lv~~A~~~~~~~------~~~g~~DniTvivv~~~ 327 (329)
|+..|...-+++ -.-|+.|||||.||-+.
T Consensus 453 lva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 453 LVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred HHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 877776552211 11288999999999875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-25 Score=195.83 Aligned_cols=213 Identities=23% Similarity=0.230 Sum_probs=154.7
Q ss_pred CCCccceEeecccCCCCceEEEEeeCCCCC---cHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHH
Q 044967 49 GLNQDAGILCQGYGTEDGEFCGVFDGHGKH---GHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEA 125 (329)
Q Consensus 49 ~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~---G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (329)
..-||++++... ....+.|||||+||| |-..+.|..+.+.+.-. .... .+.....+...
T Consensus 89 ~~GEDa~Fvss~---~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~-~v~~--------------~~~~~~~P~~l 150 (330)
T KOG1379|consen 89 KGGEDAWFVSSN---PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCER-LVQN--------------SDFNPSDPVNL 150 (330)
T ss_pred CCCCcceeeccC---cccceEEEccccchHhhcCcCHHHHHHHHHHHHHH-Hhcc--------------cccCCCChHHH
Confidence 456899999876 566899999999999 88888887666654322 1111 11333466677
Q ss_pred HHHHHHHHHHHHHhccCCCccCCCceEEEEEEe--CCEEEEEEcCCceEEEEEEccCCceEEEEcCCC--CCCCChhHHH
Q 044967 126 CVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQ--GEDLVIANLGDSRAVLGTVSDNGELKAVQLTTD--LKPSLPSEAE 201 (329)
Q Consensus 126 l~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~d--h~~~~~~e~~ 201 (329)
|.++|.++-+. ....-++||++++.+. +++||+||+|||-..++|+ |++ ++-|.. |.++.|-++.
T Consensus 151 L~~ay~~l~~~------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~---G~v--v~~S~~Q~H~FN~PyQLs 219 (330)
T KOG1379|consen 151 LEKAYAELKSQ------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVRE---GKV--VFRSPEQQHYFNTPYQLS 219 (330)
T ss_pred HHHHHHHHhhc------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEEC---CEE--EEcCchheeccCCceeec
Confidence 77777666432 1223578888888888 8999999999999999999 966 666554 4334333332
Q ss_pred HHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCCCCCChHH
Q 044967 202 RIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQ 281 (329)
Q Consensus 202 ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~e 281 (329)
- +... ....++| .....++..++++++| +|||+||||||+|.+++
T Consensus 220 ~----------------------~p~~-----~~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~ 264 (330)
T KOG1379|consen 220 S----------------------PPEG-----YSSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKE 264 (330)
T ss_pred c----------------------CCcc-----ccccccC-------CccccceEEEeccCCC-EEEEecccccccccHHH
Confidence 2 1111 1233444 3455678899999999 69999999999999999
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHHHHHhh----------------CCCCCCCceEEEEEE
Q 044967 282 VATIVWEA-----DNKQEAARKVVEAANAAWKKK----------------FPSSKMDDCTVVCLF 325 (329)
Q Consensus 282 i~~iv~~~-----~~~~~~a~~Lv~~A~~~~~~~----------------~~~g~~DniTvivv~ 325 (329)
|..++... .+++..|+.|++.|.+...++ +.||+.||||+||..
T Consensus 265 Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 265 ILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 99999653 478999999999999986543 337899999999975
No 14
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.88 E-value=6.9e-22 Score=171.19 Aligned_cols=184 Identities=26% Similarity=0.250 Sum_probs=107.1
Q ss_pred EeecCCCCCCccceEeecccCCCCceEEEEeeCCCCC--cHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcch
Q 044967 42 YSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKH--GHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDF 119 (329)
Q Consensus 42 ~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~--G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
.+++|++..|||++.+... ++..+++||||+|+. |+.+|+++++.+.+++...+... ..
T Consensus 3 ~sh~~~~~~nqD~~~~~~~---~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~----------------~~ 63 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD---DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQE----------------SP 63 (212)
T ss_dssp ----TTSSS--EEEEEE-T---CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCH----------------HH
T ss_pred ccccCCCCCCCCCEEeeeC---CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhccccc----------------ch
Confidence 4789999999999997655 556777999999998 88999999999988888766532 10
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhccCCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCC
Q 044967 120 YKWQEACVKAFKVMDKEV-----KLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKP 194 (329)
Q Consensus 120 ~~~~~~l~~~~~~~~~~i-----~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~ 194 (329)
......+..+...+...+ ..........++||++++++.++.++++|+||||+|++.. +|++ .+++.+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~--~g~~--~~l~~~~~- 138 (212)
T PF13672_consen 64 SSIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRR--NGEI--QQLTDDHS- 138 (212)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEE--TTEE--EE-S---B-
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEEC--CCEE--EEcCCCcc-
Confidence 102223333333333221 1111334567899999999999999999999999987665 4866 88999883
Q ss_pred CChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCC
Q 044967 195 SLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVL 274 (329)
Q Consensus 195 ~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~ 274 (329)
.+... .++.+... ......++..+++.+++. |+|||||||
T Consensus 139 ---~~~~~-------------------------------~~~~~~~~-----~~~~~~~~~~~~~~~~d~-ilL~SDG~~ 178 (212)
T PF13672_consen 139 ---GEYPN-------------------------------QTRSLTGD-----DPEPDVQYGSIPLEEGDV-ILLCSDGVW 178 (212)
T ss_dssp ---HHHHH-------------------------------CTTSCCHH-----CCCTETEEEEEE--TT-E-EEEE-HHHH
T ss_pred ---chhhh-------------------------------hhhccCcc-----ccccCCeEEEEEcCCCCE-EEEECcCcc
Confidence 12211 12222221 012233566677888885 799999999
Q ss_pred CCCChHH-HHHHHHhc
Q 044967 275 DVLSSNQ-VATIVWEA 289 (329)
Q Consensus 275 d~l~~~e-i~~iv~~~ 289 (329)
+.+...+ +..++.+.
T Consensus 179 ~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 179 DNLRSYEDLEQFLKDL 194 (212)
T ss_dssp TTS-HHHHHHHH----
T ss_pred ccCCCHHHHHHHhhhc
Confidence 9998655 67777554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=7.4e-20 Score=179.06 Aligned_cols=242 Identities=20% Similarity=0.271 Sum_probs=195.5
Q ss_pred eEEEEeecCCCCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCc
Q 044967 38 LCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSI 117 (329)
Q Consensus 38 ~~~~~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
.+|++-..|.|..+==+......|...+...||.+||-+ -...+.++...+..++.++.... .
T Consensus 523 t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~--n~~v~~~vq~~ma~~L~eev~~~---------------~ 585 (1081)
T KOG0618|consen 523 TYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSR--NSRVLSLVQDTMASYLAEEVQLY---------------G 585 (1081)
T ss_pred eeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCC--chhHHHHHHHHHHHHHHHHHHhc---------------c
Confidence 388888889987665555555555557778999999999 88999999999999999888764 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCccCCCceEEEEEEeC--------CEEEEEEcCCceEEEEEEccCCceEEEEcC
Q 044967 118 DFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQG--------EDLVIANLGDSRAVLGTVSDNGELKAVQLT 189 (329)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~~--------~~l~~anvGDSr~~l~~~~~~g~l~~~~lt 189 (329)
.. .+.+..+|...++++.... ..-|..++.+.+.. .++++||||+|.+++++. |. ..++|
T Consensus 586 ~e---t~~mr~~fl~~~rklg~~g----~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~n---g~--~~p~t 653 (1081)
T KOG0618|consen 586 NE---TEQMRNTFLRLNRKLGEEG----QVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRN---GK--PLPTT 653 (1081)
T ss_pred Ch---HHHHHHHHHHHhhhhhhhh----ccccchhhheeecccccCcccchhhhHhhhccchhhhhhc---CC--cCccc
Confidence 11 2338889999999986443 23344555555542 368999999999999999 73 36666
Q ss_pred CCC-CCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEE
Q 044967 190 TDL-KPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILL 268 (329)
Q Consensus 190 ~dh-~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll 268 (329)
+-. ..-.++|..||+..+|.+.. . ++..|....||++|-+...+. +-+.|+|....+.+.|+|||+
T Consensus 654 ~~~~~~v~~eE~~RI~~~~g~i~e---d---------~k~ngvt~~tR~iG~~~l~P~-v~p~Phv~~~~Lt~qdE~LIv 720 (1081)
T KOG0618|consen 654 RSPMLEVDREEYKRIVDSKGFITE---D---------NKLNGVTSSTRAIGPFSLFPH-VLPDPHVSVVILTEQDEFLIV 720 (1081)
T ss_pred ccccccCCHHHHHHHHHhcCeecC---C---------Ceeeceeeeeeeccccccccc-ccCCCceeeEecccCceEEEE
Confidence 554 44489999999999999973 1 222334459999999877775 889999999999999999999
Q ss_pred EcCCCCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967 269 ATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK 328 (329)
Q Consensus 269 ~SDGl~d~l~~~ei~~iv~~~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~ 328 (329)
++-+||++|+-+++++++++..+|-.+|++|++.|... |..||++++||++..
T Consensus 721 gn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSY-------gc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 721 GNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSY-------GCAENVSVLVVRLNH 773 (1081)
T ss_pred cchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhc-------ccccCeeEEEEEeec
Confidence 99999999999999999999899999999999999999 999999999999864
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.78 E-value=2.6e-17 Score=140.37 Aligned_cols=174 Identities=18% Similarity=0.134 Sum_probs=126.3
Q ss_pred CCCCccceEeecccCCCC-ceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHHH
Q 044967 48 KGLNQDAGILCQGYGTED-GEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEAC 126 (329)
Q Consensus 48 r~~neD~~~~~~~~~~~~-~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (329)
....-|.+.+... ++ ..+++|+|||| +..+|.++...+...+.+..... ..+
T Consensus 14 ~~~~GD~~~~~~~---~~~~~~~~v~Dg~G--~G~~aa~~s~~~~~~~~~~~~~~----------------------~~~ 66 (193)
T smart00331 14 TQVGGDFYDVVKL---PEGRLLIAIADVMG--KGLAAALAMSMARSALRTLLSEG----------------------ISL 66 (193)
T ss_pred HhcCccEEEEEEe---CCCeEEEEEEecCC--CChHHHHHHHHHHHHHHHHhhcC----------------------CCH
Confidence 3667788877654 33 58999999999 66667777777776666554421 124
Q ss_pred HHHHHHHHHHHHhccCCCccCCCceEEEEEE--eCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHHHH
Q 044967 127 VKAFKVMDKEVKLQENLDCFCSGTTAVVVIR--QGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIK 204 (329)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i--~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~ri~ 204 (329)
.+.+..+|+.+.... ...+++|++++++ ..++++++|+||+|+|++++ +|.. .+.+.+
T Consensus 67 ~~~l~~~n~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~--~~~~--~~~~~~------------- 126 (193)
T smart00331 67 SQILERLNRAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRA--DGGL--VEDLDD------------- 126 (193)
T ss_pred HHHHHHHHHHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEEC--CCCe--EEEcCC-------------
Confidence 456667777776542 2457999999988 57899999999999999994 1433 444433
Q ss_pred HhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCCCCCChHHHHH
Q 044967 205 QCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVAT 284 (329)
Q Consensus 205 ~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~ei~~ 284 (329)
.++.+|.. ...+++...+.+.++|. |+|+|||||+.+.++++.+
T Consensus 127 -----------------------------~~~~lG~~------~~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~l~~ 170 (193)
T smart00331 127 -----------------------------LGAPLGLE------PDVEVDVRELTLEPGDL-LLLYTDGLTEARNPERLEE 170 (193)
T ss_pred -----------------------------CCceeeeC------CCCcceeEEEeeCCCCE-EEEECCCccccCChHHHHH
Confidence 23455553 33456788889999995 7999999999999999999
Q ss_pred HHHhcC--CHHHHHHHHHHHHH
Q 044967 285 IVWEAD--NKQEAARKVVEAAN 304 (329)
Q Consensus 285 iv~~~~--~~~~~a~~Lv~~A~ 304 (329)
++.+.. +++++++.+.+.+.
T Consensus 171 ~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 171 LLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh
Confidence 998763 68888888877654
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.63 E-value=4.1e-14 Score=142.94 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=131.4
Q ss_pred cCCCCCCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHH
Q 044967 45 QGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQE 124 (329)
Q Consensus 45 ~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
++.+..+.|.+.+.... +....++|+||+|. |..|+ .+.....+.+.+..... .+
T Consensus 561 k~g~~vsGD~y~~~~l~--~g~~~~~laDGmGh-G~~Aa-~~S~~~~~ll~~~~~~g---------------~~------ 615 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLS--AGKYAVAISDGMGS-GPEAA-QESSACVRLLEKFLESG---------------FD------ 615 (764)
T ss_pred CCCCcccCceEEEEEEC--CCEEEEEEEcccCC-CHHHH-HHHHHHHHHHHHHHHcC---------------CC------
Confidence 33467889998876641 33478999999994 44443 33444444444333221 11
Q ss_pred HHHHHHHHHHHHHHhccCCCccCCCceEEEEEEe--CCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHH
Q 044967 125 ACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQ--GEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAER 202 (329)
Q Consensus 125 ~l~~~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~r 202 (329)
...++..+|+.+.... ...+.+|+.+++++ .+++.++|+|+++.|+.|+ |.. .+++..+-
T Consensus 616 -~~~ai~~lN~~L~~~~---~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~---~~v--~~i~s~~l--------- 677 (764)
T TIGR02865 616 -REVAIKTVNSILSLRS---TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRG---AKV--EVIRSSNL--------- 677 (764)
T ss_pred -HHHHHHHHHHHHHhCC---CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEEC---CEE--EEecCCCc---------
Confidence 2456667777665432 12457999988886 6899999999999999887 644 66654321
Q ss_pred HHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCCCCCChHH-
Q 044967 203 IKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQ- 281 (329)
Q Consensus 203 i~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~e- 281 (329)
.+|-. ...+++....++.++| +|+|+|||++|..++.+
T Consensus 678 ----------------------------------PlGil------~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~ 716 (764)
T TIGR02865 678 ----------------------------------PIGIL------DEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEG 716 (764)
T ss_pred ----------------------------------eeEec------cCCccceEEEEeCCCC-EEEEECCCCCcCCccccc
Confidence 12211 1245677788999999 58999999999876543
Q ss_pred ----HHHHHHh--cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEe
Q 044967 282 ----VATIVWE--ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFL 326 (329)
Q Consensus 282 ----i~~iv~~--~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~ 326 (329)
+.+++.. ..+|++.++.|++.+.+... +...||+|++++++
T Consensus 717 ~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~----~~~~DD~Tvlvirv 763 (764)
T TIGR02865 717 KVLWLVRKLKETNTNDPEEIAEYLLEKAKELRS----GKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----CCCCCCeEEEEEEe
Confidence 7777765 35899999999999987611 13589999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.52 E-value=4.2e-12 Score=108.07 Aligned_cols=181 Identities=23% Similarity=0.199 Sum_probs=115.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHHHHHHHHHHHHHHHhccCC
Q 044967 64 EDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENL 143 (329)
Q Consensus 64 ~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 143 (329)
++.++++|+|+.| -...|.+....+...+....... .. ..+.+..+|+.+......
T Consensus 2 ~~~~~~~v~D~~G--hG~~aa~~~~~~~~~~~~~~~~~---------------~~-------p~~~l~~ln~~l~~~~~~ 57 (193)
T PF07228_consen 2 DGRYFIIVGDVSG--HGVSAALLSAALASAIRELLDEG---------------LD-------PEELLEALNRRLYRDLKG 57 (193)
T ss_dssp TTEEEEEEEEESS--SSHHHHHHHHHHHHHHHHHHHTT---------------TS-------HHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEEEEecC--CCHHHHHHHHHHHHHHHHHHHcC---------------CC-------HHHHHHHHHHHHHHHhhh
Confidence 3458899999999 44555555555666665554321 11 455666667776433221
Q ss_pred CccCCCceEEEEEEe--CCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHHHHHhCCeEEecccCCccce
Q 044967 144 DCFCSGTTAVVVIRQ--GEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQR 221 (329)
Q Consensus 144 ~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~ 221 (329)
. ...+|++++.++ .++++++|+|++++++++. ++-....+....
T Consensus 58 ~--~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~---~~~~~~~~~~~~----------------------------- 103 (193)
T PF07228_consen 58 D--NRYATACYAIIDPETGTLTYANAGHPPPLLLRP---GGREIEQLESEG----------------------------- 103 (193)
T ss_dssp T--STTEEEEEEEEETTTTEEEEEEESSSEEEEEET---TCTEEEEETCSS-----------------------------
T ss_pred c--cccceEEEEEecccceEEEEeCCCCCCEEEEec---cccceeecccCc-----------------------------
Confidence 1 357788888776 6789999999999999998 321123322211
Q ss_pred eeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCCCCCChH-------HHHHHHHh--cCCH
Q 044967 222 VWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSN-------QVATIVWE--ADNK 292 (329)
Q Consensus 222 ~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~-------ei~~iv~~--~~~~ 292 (329)
-.+|-. ...++....+++.++|. |+|+||||+|....+ .+.+++.. ..++
T Consensus 104 --------------~~lG~~------~~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (193)
T PF07228_consen 104 --------------PPLGIF------EDIDYQEQEIQLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSP 162 (193)
T ss_dssp --------------BBCSSS------CTTCEEEEEEE--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-H
T ss_pred --------------cceeee------ccccccceEEEeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhccCCCH
Confidence 113432 22345566788999995 899999999998433 44566663 3578
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEee
Q 044967 293 QEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQ 327 (329)
Q Consensus 293 ~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~ 327 (329)
+++++.|++.+... ..+...||+|++++++.
T Consensus 163 ~~~~~~l~~~~~~~----~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 163 QEIIDALLEAIDRF----GKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHHHHHHHHHH----TTSSTSS-EEEEEEEE-
T ss_pred HHHHHHHHHHHHHh----cCCCCCCceEEEEEEEC
Confidence 89999999888883 12368999999999873
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.51 E-value=2.6e-05 Score=73.19 Aligned_cols=195 Identities=18% Similarity=0.177 Sum_probs=121.5
Q ss_pred CCccceEeecccCCCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHHHHHH
Q 044967 50 LNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKA 129 (329)
Q Consensus 50 ~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (329)
..-|.+-+.... .....++|.|..|- |-.||-. .......+...... .... ....
T Consensus 161 vGGD~yd~~~~~--~~~~~i~I~DvsG~-Gv~aal~-m~~~~~~~~~~~~~-----------------~~~~----p~~~ 215 (367)
T COG2208 161 VGGDYYDFIQLG--EKRLRIGIGDVSGK-GVPAALL-MLMPKLALRLLLES-----------------GPLD----PADV 215 (367)
T ss_pred cCCceEEEEEEC--CcEEEEEEEeccCC-CHHHHHH-HHHHHHHHHHhhhc-----------------ccCC----HHHH
Confidence 556776665541 24689999999883 5444444 33333322222221 0111 2334
Q ss_pred HHHHHHHHHhccCCCccCCCceEEEEEEe--CCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHHHHHhC
Q 044967 130 FKVMDKEVKLQENLDCFCSGTTAVVVIRQ--GEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCR 207 (329)
Q Consensus 130 ~~~~~~~i~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~ri~~~~ 207 (329)
+..+|+.+....... +=+|+...+++ .+.+..+|+|---.++.+. ++......++.
T Consensus 216 l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~--~~~~~~~~l~~----------------- 273 (367)
T COG2208 216 LETLNRVLKQNLEED---MFVTLFLGVYDLDSGELTYSNAGHEPALILSA--DGEIEVEDLTA----------------- 273 (367)
T ss_pred HHHHHHHHHhcccCC---cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEc--CCCceeEEccC-----------------
Confidence 555666666544222 56777777765 6789999999988888887 22100111111
Q ss_pred CeEEecccCCccceeeecCCCCCceecccccCCCCCccCCceeccceEEEEcCCCCeEEEEEcCCCCC-------CCChH
Q 044967 208 GRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLD-------VLSSN 280 (329)
Q Consensus 208 g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~~~~~p~i~~~~l~~~d~flll~SDGl~d-------~l~~~ 280 (329)
....+|-. ....+.+....+.+|| .+++.|||+.+ .+..+
T Consensus 274 --------------------------~g~piG~~------~~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~ 320 (367)
T COG2208 274 --------------------------LGLPIGLL------PDYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLE 320 (367)
T ss_pred --------------------------CCceeeec------CCccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHH
Confidence 33445543 4556677788899988 58999999999 56777
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEee
Q 044967 281 QVATIVWE--ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQ 327 (329)
Q Consensus 281 ei~~iv~~--~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~ 327 (329)
....++.. ..+++++++.+.+...+.--.. ...||+|++++++.
T Consensus 321 ~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~---~~~DDiTll~lk~~ 366 (367)
T COG2208 321 RLLKILGRLLGQPAEEILEAILESLEELQGDQ---IQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCc---cccCceEEEEEEec
Confidence 77777763 3478888888777776661111 45788999999985
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=73.87 E-value=43 Score=30.39 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=56.9
Q ss_pred CccceEeecccCCCCceEEEEee--CCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHHHHH
Q 044967 51 NQDAGILCQGYGTEDGEFCGVFD--GHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVK 128 (329)
Q Consensus 51 neD~~~~~~~~~~~~~~l~~V~D--G~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (329)
.-|.+-+...- ++...|-++| |||++|..||-++...+...+....... . .... ....
T Consensus 150 ~GD~~d~~~l~--~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~---~-----------~~~~----~p~~ 209 (303)
T PRK10693 150 PGLVLDIAALS--DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQ---N-----------QRLP----ELGA 209 (303)
T ss_pred CccEEeeeecC--CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhccc---c-----------cccC----CHHH
Confidence 44655444331 3334444555 8888887777776555555555432110 0 0000 1345
Q ss_pred HHHHHHHHHHhccCCCccCCCceEEEEEEe--CCEEEEEEcCCceEEE
Q 044967 129 AFKVMDKEVKLQENLDCFCSGTTAVVVIRQ--GEDLVIANLGDSRAVL 174 (329)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l 174 (329)
.+..+|+.+....... -.|+..++++ .+++.++|.|-...++
T Consensus 210 ~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~ 253 (303)
T PRK10693 210 LLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLN 253 (303)
T ss_pred HHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEe
Confidence 5667777776553221 1477777776 5689999999998774
No 21
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=42.35 E-value=39 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.4
Q ss_pred CChHHHHHHHHhcC-CHHHHHHHHHH
Q 044967 277 LSSNQVATIVWEAD-NKQEAARKVVE 301 (329)
Q Consensus 277 l~~~ei~~iv~~~~-~~~~~a~~Lv~ 301 (329)
-+++||..++.++. +|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 58899999998764 89999999886
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=37.04 E-value=1.3e+02 Score=25.20 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=31.1
Q ss_pred EEEEEcCCCCC-----------CCChHHHHHHHHhc----CCHHHHHHHHHHHHHHH
Q 044967 265 FILLATDGVLD-----------VLSSNQVATIVWEA----DNKQEAARKVVEAANAA 306 (329)
Q Consensus 265 flll~SDGl~d-----------~l~~~ei~~iv~~~----~~~~~~a~~Lv~~A~~~ 306 (329)
-+|..|.|+|- +|.++..-+.+... .=|+++|++|++.-..|
T Consensus 73 TvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~R 129 (237)
T COG3700 73 TVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred eeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhc
Confidence 47888888874 56666666666543 24789999999998887
No 23
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=34.94 E-value=23 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.3
Q ss_pred CCCeEEEEEcCCCCCCCC
Q 044967 261 SNDQFILLATDGVLDVLS 278 (329)
Q Consensus 261 ~~d~flll~SDGl~d~l~ 278 (329)
+|.+ +++++||+|=-+.
T Consensus 26 ~G~R-llva~nGv~lEv~ 42 (72)
T PF09436_consen 26 PGHR-LLVASNGVFLEVR 42 (72)
T ss_pred CCcE-EEEecCcEEEEEe
Confidence 5676 6999999996544
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.60 E-value=93 Score=16.94 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=16.3
Q ss_pred EEEeCCEEEEEEcCCceEEEE
Q 044967 155 VIRQGEDLVIANLGDSRAVLG 175 (329)
Q Consensus 155 ~~i~~~~l~~anvGDSr~~l~ 175 (329)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334788999999999887653
No 25
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=27.62 E-value=50 Score=25.95 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=13.8
Q ss_pred EEEeeCCCCC-cHHHHHHHHHHhH
Q 044967 69 CGVFDGHGKH-GHVVSELVRNRLP 91 (329)
Q Consensus 69 ~~V~DG~Gg~-G~~as~~a~~~l~ 91 (329)
.+|.||.||. |...-+.+.+.++
T Consensus 2 I~VIDGQGGGiG~~iv~~lr~~~~ 25 (131)
T PF12953_consen 2 IAVIDGQGGGIGKQIVEKLRKELP 25 (131)
T ss_pred EEEEeCCCChhHHHHHHHHHHhCC
Confidence 4799999965 5444444444443
No 26
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=26.42 E-value=3e+02 Score=26.47 Aligned_cols=12 Identities=25% Similarity=0.033 Sum_probs=9.1
Q ss_pred eEEEEeeCCCCC
Q 044967 67 EFCGVFDGHGKH 78 (329)
Q Consensus 67 ~l~~V~DG~Gg~ 78 (329)
.=.+||||+-|.
T Consensus 322 ~DVVVcDGFtGN 333 (437)
T PRK13845 322 FDVVVCDGFTGN 333 (437)
T ss_pred CCEEEeCCcchH
Confidence 346799999954
No 27
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=26.04 E-value=2.7e+02 Score=21.42 Aligned_cols=43 Identities=5% Similarity=0.217 Sum_probs=33.7
Q ss_pred ceeccceEEEEcCCCCeEEEEEcCCCCC-------CCChHHHHHHHHhcC
Q 044967 248 IIAIPDVSYRRLTSNDQFILLATDGVLD-------VLSSNQVATIVWEAD 290 (329)
Q Consensus 248 ~~~~p~i~~~~l~~~d~flll~SDGl~d-------~l~~~ei~~iv~~~~ 290 (329)
+...|++...+...++.|.|.+..-.-+ .+++++|.-+..++.
T Consensus 39 Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~g 88 (115)
T PRK06369 39 VFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQTG 88 (115)
T ss_pred EEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHHC
Confidence 7889999988888778788888766654 478888888877664
No 28
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=25.51 E-value=2.6e+02 Score=25.72 Aligned_cols=12 Identities=25% Similarity=0.027 Sum_probs=8.9
Q ss_pred eEEEEeeCCCCC
Q 044967 67 EFCGVFDGHGKH 78 (329)
Q Consensus 67 ~l~~V~DG~Gg~ 78 (329)
.=..||||.-|.
T Consensus 210 ~DVvV~DGf~GN 221 (322)
T TIGR00182 210 CDVLVCDGFTGN 221 (322)
T ss_pred CCEEEcCCcHHH
Confidence 345799999943
No 29
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=24.80 E-value=1.2e+02 Score=17.68 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCEEEEEEcCCceEEEEEE
Q 044967 159 GEDLVIANLGDSRAVLGTV 177 (329)
Q Consensus 159 ~~~l~~anvGDSr~~l~~~ 177 (329)
++++|++|-|+..+.++..
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5689999999888888765
No 30
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=24.72 E-value=1.5e+02 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHhHHHH
Q 044967 67 EFCGVFDGHGKHGHVVSELVRNRLPSLI 94 (329)
Q Consensus 67 ~l~~V~DG~Gg~G~~as~~a~~~l~~~l 94 (329)
.+.|| |.||.-++|+.++.+.+.+.+
T Consensus 179 ~~vGV--GIGGt~d~aa~LaK~Allr~i 204 (273)
T TIGR00722 179 IIVGV--GIGGSFETAAKLAKKALLRPI 204 (273)
T ss_pred CeEEE--EeCCCHHHHHHHHHHHhhhhh
Confidence 45555 688777889999998887654
No 31
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=23.63 E-value=85 Score=28.13 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=18.9
Q ss_pred ccCCCceEEEEEEeCCEEEEEEcCCc
Q 044967 145 CFCSGTTAVVVIRQGEDLVIANLGDS 170 (329)
Q Consensus 145 ~~~~GtT~~~~~i~~~~l~~anvGDS 170 (329)
...+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 45789998888 67889999999875
No 32
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=21.84 E-value=76 Score=23.51 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=25.4
Q ss_pred EEcCCCCeEEEEEcCCCCCCCChHHHHHHHHhc
Q 044967 257 RRLTSNDQFILLATDGVLDVLSSNQVATIVWEA 289 (329)
Q Consensus 257 ~~l~~~d~flll~SDGl~d~l~~~ei~~iv~~~ 289 (329)
.-+.++|. ++|+.||++-.+...+...-++..
T Consensus 20 ~~l~~~D~-vlL~qdGV~aAl~~~~~~~sl~~~ 51 (96)
T COG2168 20 RLLTEGDA-VLLLQDGVYAALKGNRYLASLRES 51 (96)
T ss_pred HHhcccCe-EEEEcccchhhhcCcHHHHHHhcC
Confidence 34567887 799999999999888877777665
Done!