BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044971
(153 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/153 (98%), Positives = 151/153 (98%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MAT+TMALSSSFVGKAVNLAPSGNELSNGGRISMRKT SKSVSSGSPWYG DRVKYLGPF
Sbjct: 1 MATATMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPF 60
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/154 (91%), Positives = 145/154 (94%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MATSTMALSS SF GKAV L+PS EL GR+SMRKTA+KSVSSGSPWYG DRVKYLGP
Sbjct: 1 MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 140/154 (90%), Positives = 145/154 (94%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MATSTMALSS SF GKAV L+PS EL GR+SMRKTA+K+VSSGSPWYG DRVKYLGP
Sbjct: 1 MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/153 (89%), Positives = 143/153 (93%), Gaps = 1/153 (0%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MATSTM LSSSF+GKAV LAP+GN+L GR++MRKT + VSSGSPWYG DRVKYLGPF
Sbjct: 1 MATSTMTLSSSFIGKAVQLAPTGNDLMGNGRVTMRKTG-RQVSSGSPWYGPDRVKYLGPF 59
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SGEPPSYLTGEFPGDYGWD AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN
Sbjct: 60 SGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 119
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 152
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/154 (88%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MATSTMALSS SF GKAV L PS L R+SMRK+ K VSSGSPWYG DRVKYLGP
Sbjct: 1 MATSTMALSSPSFAGKAVKLTPSAPGLMGNARVSMRKSVGKPVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 154
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/154 (90%), Positives = 143/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S GKAV LAPS EL N GR+SMRK+AS++VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSLAGKAVKLAPSTPEL-NVGRVSMRKSASRNVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 145/155 (93%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLG 58
MA+STMALSSSF GKAV L+PS +E++ G+++MRKTASK+ VSSGS WYG DRVKYLG
Sbjct: 1 MASSTMALSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGSLWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 146/156 (93%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STMALSSS FVGKAV L+PS +E++ G+++MRKTA+K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSSSFVGKAVKLSPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 145/156 (92%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MATSTMALSSS F GKAV L+PS +E++ GR++MRKTA+K+ SSGSPWYG DRVKYL
Sbjct: 1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 145/156 (92%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MATSTMALSSS F GKAV L+PS +E++ GR++MRKTA+K+ SSGSPWYG DRVKYL
Sbjct: 1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 145/156 (92%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA STMALSS SF GKAV L+PS +E++ G+++MRKTASK +VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 143/155 (92%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLG 58
MA ST ALSS F GKAV L+PS +E++ G+++MRKTASK+ VSSGSPWYG DRVKYLG
Sbjct: 1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 145/156 (92%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STMALSSS F GKAV L+PS +E++ G+++MRKTASK+ VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 142/154 (92%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS +E++ GR+SMRKT +K V+S SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 142/154 (92%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E++ GR+SMRKT +K V+S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 142/154 (92%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E++ GR+SMRKTA+K VSS SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTAAKPVSSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLT EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 143/155 (92%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLG 58
MA ST ALSS F GKAV L+PS +E++ G+++MRKTA+K+ VSSGSPWYG DRVKYLG
Sbjct: 1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/156 (87%), Positives = 142/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA+STMALSS S GKAV LAPS +EL GR+SMRKT K VSSGSPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSLAGKAVKLAPSASELLGVGRVSMRKTGGRPKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 156
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/154 (88%), Positives = 142/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSSS G+A+ LAPS +L G R+SMRKTASK+VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVG-RVSMRKTASKTVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 141/154 (91%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS E++ GR+SMRKT +K V+S SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFS+GGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA 154
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/154 (88%), Positives = 142/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSSS G+A+ LAPS EL G R+SMRKTASK+VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPELGVG-RVSMRKTASKTVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 141/154 (91%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS E++ GR+SMRKT +K V+S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/154 (88%), Positives = 142/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S G+A+ L+PS ELS GGRISMRK ASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSLAGQAIKLSPSTPELS-GGRISMRKAASKSVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 137/151 (90%), Positives = 141/151 (93%), Gaps = 2/151 (1%)
Query: 4 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
STMALSS S GKAV LAPS EL N GR+SMRK+AS++VSSGSPWYG DRVKYLGPFSG
Sbjct: 1 STMALSSPSLAGKAVKLAPSTPEL-NVGRVSMRKSASRNVSSGSPWYGPDRVKYLGPFSG 59
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGV
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 150
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S+MALSS SF GK V L PS EL R++MRK+A+KSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASSMALSSPSFAGKVVKLTPSSPELFGNSRVTMRKSATKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 142/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA STMALSS S GKA+ LAPS ++L GR++MRKT +K VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPSLAGKALKLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 156
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGE VWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEVVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/154 (87%), Positives = 141/154 (91%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS +F GKAV L+PS EL GR+SMRKT +K VSSGSPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPAFAGKAVKLSPSSPELMGNGRVSMRKT-TKPVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/154 (87%), Positives = 142/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSSS G+A+ LAPS +L G R+SMRKTASK+V+SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVG-RVSMRKTASKTVTSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/154 (87%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF GKAV L+P+ EL GR+SMR+TA K SGSPWYG DRVKYL P
Sbjct: 1 MAASTMALSSPSFAGKAVKLSPAPRELMGNGRVSMRRTA-KPTPSGSPWYGPDRVKYLSP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS +E++ GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSTSEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/154 (88%), Positives = 140/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S GKAV +APS +EL GRISMRKTA K VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSLAGKAVKVAPSSSELFGNGRISMRKTA-KPVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 153
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSQGGLDYLGNPSLVHA 154
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+R
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 144/156 (92%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSSS F GKAV L+PS +E++ G+++MRKT +K+ +SSGSPWYG DRVKYL
Sbjct: 1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/154 (88%), Positives = 142/154 (92%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S G+A+ L+PS +LS GGRISMRKTASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSLAGQAIKLSPSTPDLS-GGRISMRKTASKSVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALG VFPELLAR
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 140/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + G+AV L+P+ E+ + +MRKTASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC FPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 141/156 (90%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA+STMALSS S GK V LAP+ +E+ GRI+MRKTA +KSVSS SPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSLAGKMVKLAPTASEILGEGRITMRKTAGKTKSVSSDSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 141/156 (90%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA STMALSS S G+A+ LAPS ++L GR++MRKTA K VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS SF G+AV L+PS +E++ GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFREGGLDYLGNPSLVHA 154
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS +F GKAV L+P +E+ GR++MRKT + SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS +F GKAV L+P +E+ GR++MRKT + SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 134/154 (87%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS +F GKAV L+PS EL GR++MRKT +K SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPSAPELMGNGRVNMRKTFNKP-PSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 141/154 (91%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSSS G+A+ LAPS +L G R+SMRKTASK+V+SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVG-RVSMRKTASKTVTSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSY TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 143/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STMALSSS F GKAV L+PS +E++ G+++MRKTASK+ VSS SPWYG +RVKYL
Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHA 156
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 136/152 (89%), Positives = 139/152 (91%), Gaps = 3/152 (1%)
Query: 4 STMALSS-SFVGKAVNLAPS-GNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS 61
+TM LSS S GKAV LAPS +EL GRISMRKT KSVSSGSPWYG DRVKYLGPFS
Sbjct: 3 ATMVLSSPSLAGKAVKLAPSPASELMGNGRISMRKTG-KSVSSGSPWYGPDRVKYLGPFS 61
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 153
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/152 (88%), Positives = 138/152 (90%), Gaps = 2/152 (1%)
Query: 4 STMALSS-SFVGKAVNLAPS-GNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS 61
STMALSS S GKAV L PS +EL GRISMRKT +K VSSGSPWYG DRVKYLGPFS
Sbjct: 3 STMALSSPSLAGKAVKLGPSAASELLGNGRISMRKTIAKPVSSGSPWYGADRVKYLGPFS 62
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG
Sbjct: 63 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 122
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VKFGEAVWFKAGAQIFS+GGLDYLGN SL+HA
Sbjct: 123 VKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHA 154
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S MALSS + G+AV L+P+ E+ + +MRKTASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASAMALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 140/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS EL GRISM++T ++ VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSAPELMGNGRISMKRT-TRPVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM GALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIF EGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPSLIHA 153
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 139/154 (90%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S MALSS + G+AV L+P+ E+ + +MRKTASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASAMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS S GKAV L PS +E+ GR+SMRKT +K V SGSPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKT-TKPVPSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS S GKAV L PS +E+ GR+SMRKT +K V SGSPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKT-TKPVPSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 142/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA+STMALSS S GKA+ L P+ +E+ GR++MRKTA K +VSSGSPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSLAGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 141/156 (90%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSSS F GK V L+PS +E++ G+ +MRKTA+K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA+STMALSS S GKAV L P+ +E+ GRI+MRKTA K +V S SPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA++TMALSS SF GKAV +PS E+ GR+SMRKT +K V SGSPWYG DRV YLGP
Sbjct: 1 MASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKT-TKPVPSGSPWYGPDRVLYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 139/155 (89%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK-SVSSGSPWYGLDRVKYLG 58
MA STMALSS SF G AV +APS +EL GRISMRKT K + SSGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPSFAGMAVKVAPSSSELFGSGRISMRKTGKKPAASSGSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA++TMALSS SF GKAV +PS E+ GR+SMRKT +K V SGSPWYG DRV YLGP
Sbjct: 1 MASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKT-TKPVPSGSPWYGPDRVLYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 142/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA S+MALSS SF G+AV L+P+ ++L GRI+MRKTA K VSSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/156 (85%), Positives = 143/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA+STMALSS +F GKAV L PS +++ GRISMRK+A K +VSSGSPWYG DRVKYL
Sbjct: 1 MASSTMALSSPAFGGKAVKLNPSTSDMIGEGRISMRKSAGKPKNVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
M STMALSS SF G AV L+PS +E++ G+ MRKT +K+ VSSGSPWYG DRVKYL
Sbjct: 1 MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
M STMALSS SF G AV L+PS +E++ G+ MRKT +K+ VSSGSPWYG DRVKYL
Sbjct: 1 MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 141/156 (90%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA+S MALSS S GKAV L P+ +++ GRI+MRKTA +K+VSS SPWYG DRVKYL
Sbjct: 1 MASSAMALSSPSLAGKAVKLNPTTSQILGEGRITMRKTAGKTKNVSSDSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 141/156 (90%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSS SF GKAV +PS +E++ G+ +MRKT +K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 143/156 (91%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA+++MALSS S GKA+ L P+ +E+ + GR++MRKTA K +VSSGSPWYG DRVKYL
Sbjct: 1 MASTSMALSSPSLAGKAIKLGPTASEILSEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 131/151 (86%), Positives = 136/151 (90%), Gaps = 1/151 (0%)
Query: 4 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
STMALSS SF GKA+ L+PS +L GRISMRKT K V SGSPWYG DRV YLGP SG
Sbjct: 1 STMALSSPSFAGKAIKLSPSTPDLVGRGRISMRKTGGKPVRSGSPWYGPDRVLYLGPLSG 60
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELLARNGV
Sbjct: 61 DPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 120
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 151
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 135/159 (84%), Positives = 144/159 (90%), Gaps = 6/159 (3%)
Query: 1 MATS-TMALSS-SFVGKAVNLAPSGNELSNG--GRISMRKTASKS--VSSGSPWYGLDRV 54
MATS TMALSS S G+AV LAP+ EL G GR++MRK+ +KS VSSGSPWYG DRV
Sbjct: 1 MATSSTMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRV 60
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 61 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 120
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELL+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 ELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 159
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 140/154 (90%), Gaps = 4/154 (2%)
Query: 4 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGLDRVKYLGP 59
+TMALSS S GKAV LAPS +++ GR++MRK+ +K+ +SGSPWYG DRVKYLGP
Sbjct: 3 ATMALSSPSLAGKAVKLAPSASDVLGEGRVTMRKSTAKAKPAAASGSPWYGPDRVKYLGP 62
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 63 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 123 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 156
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 141/155 (90%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSS +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG +RVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NREL+VIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 138/154 (89%), Gaps = 4/154 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S+MALSS S GKAV L+PS E+ GR+SMRKT +K SSGSPWYG DRVKYLGP
Sbjct: 1 MAASSMALSSPSLAGKAVKLSPSTQEV---GRVSMRKTVTKQASSGSPWYGPDRVKYLGP 57
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 58 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 117
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+ IFSEGGLDYLGNPSLIHA
Sbjct: 118 NGVKFGEAVWFKAGSLIFSEGGLDYLGNPSLIHA 151
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 139/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA+STMALSS SF GKAV L+P+ +E GRI+MRK A KS + SPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSFAGKAVKLSPTASETLGEGRITMRKAAGKSKVATIDSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA +TM+LSS SF GKAV L+PS E+ G+++MRKT +K VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMSLSSPSFAGKAVKLSPSSYEIIGNGKVTMRKTVIKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSG PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 139/155 (89%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVS--SGSPWYGLDRVKYLG 58
MA STMALSS F G+AV +PS +EL GR+SMRKTA+ + SGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPFAGQAVKTSPSSSELFGNGRVSMRKTAAAKKAAPSGSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/152 (88%), Positives = 137/152 (90%), Gaps = 2/152 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSV-SSGSPWYGLDRVKYLG 58
MA STMALSS SF GKAV +APS +EL GRISMRKT K V SSGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPSFAGKAVKVAPSSSELFGNGRISMRKTGKKPVASSGSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL
Sbjct: 121 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/151 (86%), Positives = 137/151 (90%), Gaps = 3/151 (1%)
Query: 6 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYLGPFSG 62
MALSS S GKA LAPS ++L GR++MRKT +K VSSGSPWYG DRVKYLGPFSG
Sbjct: 4 MALSSPSLAGKAFQLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSG 63
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/156 (85%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA+STMALSS S G+AV L S + + GRI+MRKTASKS VSSGSPWYG DRVKYL
Sbjct: 1 MASSTMALSSPSLAGQAVKLGSSVSNIVGEGRITMRKTASKSKNVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/153 (85%), Positives = 137/153 (89%), Gaps = 2/153 (1%)
Query: 3 TSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK-SVSSGSPWYGLDRVKYLGPF 60
+TMALSS SF GKAV LAPS + + GR++MRK K + SSGSPWYG DRVKYLGP
Sbjct: 2 AATMALSSPSFAGKAVKLAPSASGVLGQGRVTMRKAGGKPAASSGSPWYGPDRVKYLGPL 61
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 154
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 142/156 (91%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMA+SSS F GKAVN+ PS ++++ G+ +MRKT +K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 141/156 (90%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MATSTMA+SS S G+A+ LAPS + + GRI+MRKT +KS VSSGSPWYG DRVKYL
Sbjct: 1 MATSTMAVSSPSLAGQAIKLAPS---VQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 58 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/156 (84%), Positives = 140/156 (89%), Gaps = 7/156 (4%)
Query: 4 STMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASK-SVSSGSPWYGLDRVKYL 57
+TM LSS+F GKAV L+ + EL S+ GR++MRKTA K + SSGSPWYG DRVKYL
Sbjct: 2 ATMTLSSTFTGKAVPLS-AQTELPATVRSSNGRVTMRKTAGKPAASSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 156
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/153 (85%), Positives = 137/153 (89%), Gaps = 3/153 (1%)
Query: 4 STMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYLGPF 60
STMALSS S G AV L PS + +S GR +MRKTA K +VSSGSPWYG +RVKYLGPF
Sbjct: 15 STMALSSPSLAGTAVKLTPSSSVVSGDGRFTMRKTAGKPKTVSSGSPWYGPERVKYLGPF 74
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN
Sbjct: 75 SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 134
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 167
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 139/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSSS F GKAV L+ S +E++ G+++MRKT +K+ SS SPWYG DRVKYL
Sbjct: 1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL
Sbjct: 61 GPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 121 ARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 140/155 (90%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSS +F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 155
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 140/155 (90%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSS +F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 155
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/154 (81%), Positives = 138/154 (89%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + GKAV L+P+ +E+ GRI+MRK + + SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 154
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 135/149 (90%), Gaps = 1/149 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S+MALSS SF GK V L PS EL R++MRK+A+KSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASSMALSSPSFAGKVVKLTPSSPELFGNSRVTMRKSATKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 136/154 (88%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + GKAV +APS +EL GR+SMRKT VS SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 137/154 (88%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G V L P+ +++ GGR+SMRKT K+ SGSPWYG DRV YLGP
Sbjct: 1 MAASTMALSSPSFAGTXVKLGPNASDILGGGRVSMRKTGFKA-PSGSPWYGPDRVLYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+R
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 137/154 (88%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G V L P+ +++ GGR+SMRKT K+ SGSPWYG DRV YLGP
Sbjct: 1 MAASTMALSSPSFAGTTVKLGPNASDILGGGRVSMRKTGFKA-PSGSPWYGPDRVLYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+R
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 137/154 (88%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S G AV L P+ +++ GGR+SMRKT K+ SGSPWYG DRV YLGP
Sbjct: 1 MAASTMALSSPSLAGTAVKLGPNASQILGGGRVSMRKTGFKA-PSGSPWYGPDRVLYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+R
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 140/156 (89%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSSS F GKAV L+PS +E++ GR +MRKTA+K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMALSSSTFAGKAVKLSPSSSEITGNGRFTMRKTAAKAKPVSSGSPWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGE PGDYGWDTAGLSADPETFAKNRELEVIHCRWA+L LGCVFPELL
Sbjct: 61 GPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELL 120
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFK G+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 SRNGVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHA 156
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/155 (81%), Positives = 139/155 (89%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSS +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG +RVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTG+FPGDYGWDTAGLSA PETF +NRELEVIHCRWAMLGALGCVFPELLA
Sbjct: 61 PFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 140/156 (89%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSSS F GKAVN+ PS +E++ G+++MRKT +K+ VSSGSPWYG DRVKYL
Sbjct: 1 MAAATMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELF 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA 155
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/154 (81%), Positives = 138/154 (89%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + GKAV L+P+ +E+ GRI+MRK + + SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGV+FGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 NGVEFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 154
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 141/156 (90%), Gaps = 5/156 (3%)
Query: 1 MATSTMALSSSFVGKAV-NLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MAT+TM+LSS+F GK+V N+A S L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MATTTMSLSSAFAGKSVKNVASSA--LFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYL 58
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 154
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 139/155 (89%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSS +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 155
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 138/154 (89%), Gaps = 3/154 (1%)
Query: 3 TSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGP 59
++MALSS S VGKAV LAP+ +E+ GR+SMRKTA K VSSGSPWYG DRVKYLGP
Sbjct: 2 AASMALSSPSLVGKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGP 61
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 62 FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLAR 121
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 138/156 (88%), Gaps = 7/156 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MAT+TMALSSS F GKAV P+ E RI+MRKT +K+ VSSGSPWYG DRV YL
Sbjct: 1 MATATMALSSSTFAGKAVKNLPALGE----ARITMRKTVAKAKPVSSGSPWYGSDRVLYL 56
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 57 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 116
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 117 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 152
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/145 (84%), Positives = 134/145 (92%), Gaps = 2/145 (1%)
Query: 11 SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYL 68
+F GKAV L+PS +E++ GRI+MRK+ +K+ SSGSPWYG DRVKYLGPFSGE PSYL
Sbjct: 12 TFAGKAVKLSPSSSEITGNGRITMRKSVAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYL 71
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct: 72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 131
Query: 129 WFKAGAQIFSEGGLDYLGNPSLIHA 153
WFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 132 WFKAGSQIFSEGGLDYLGNPSLVHA 156
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 121/143 (84%), Positives = 131/143 (91%)
Query: 11 SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTG 70
+ G+AV L+P+ E+ + +MRKTASKSVSSGSPWYG DRVKYLGPFSGEPPSYLTG
Sbjct: 2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTG 61
Query: 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 130
EFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWF
Sbjct: 62 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWF 121
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 122 KAGSQIFSEGGLDYLGNPSLVHA 144
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/154 (79%), Positives = 137/154 (88%), Gaps = 1/154 (0%)
Query: 1 MATSTMAL-SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMAL S + GKAV L+P+ +E+ GR++MRK + + SGSPWYG DRVKYLGP
Sbjct: 1 MAATTMALYSPALAGKAVKLSPAASEVFGTGRVTMRKASKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 154
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/150 (83%), Positives = 137/150 (91%), Gaps = 2/150 (1%)
Query: 6 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGE 63
MALSS +F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE
Sbjct: 1 MALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGE 60
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 150
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 139/156 (89%), Gaps = 4/156 (2%)
Query: 1 MATSTMALS-SSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MAT+ MALS SSF GKAV PS + L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 22 MATTAMALSPSSFAGKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYL 80
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 81 GPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 140
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 141 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 176
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 139/156 (89%), Gaps = 4/156 (2%)
Query: 1 MATSTMALS-SSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MAT+ MALS SSF GKAV PS + L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MATTAMALSPSSFAGKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 137/154 (88%), Gaps = 3/154 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSS S GKAV L P +E+ G ISMRKT +K V SGSPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSPSLAGKAVKLNPF-SEIMGNGCISMRKT-TKPVPSGSPWYGPDRVKYLGP 58
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 59 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 118
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 152
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F GKAV PS L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MAAATMSLSSSTFAGKAVKNVPSLALLGEA-RVTMRKTAAKAKQVSSGSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/140 (88%), Positives = 129/140 (92%), Gaps = 3/140 (2%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKAV L PS E+ GR+SMRKT +K VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFP
Sbjct: 16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 72
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG
Sbjct: 73 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 132
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSLIHA
Sbjct: 133 SQIFSEGGLDYLGNPSLIHA 152
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/140 (88%), Positives = 129/140 (92%), Gaps = 3/140 (2%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKAV L PS E+ GR+SMRKT +K VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFP
Sbjct: 16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 72
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG
Sbjct: 73 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 132
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSLIHA
Sbjct: 133 SQIFSEGGLDYLGNPSLIHA 152
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 136/154 (88%), Gaps = 7/154 (4%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSN----GGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
+TMALSS FVGK V L P G E S+ GRISMRK+ +K SGSPWYG DRVKYLGP
Sbjct: 2 ATMALSSPFVGKVVPLNP-GTEFSSKVRGDGRISMRKSFAKP--SGSPWYGPDRVKYLGP 58
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+R
Sbjct: 59 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 118
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP L+HA
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPGLVHA 152
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L+PS EL R +MRK+A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLAGKPVKLSPSSQEL-GASRFTMRKSATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L PS EL R +MRK+A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQEL-GAARFTMRKSATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MAT+ MALSSS F GKAV PS + L R++MRKTA+K+ VSS SPWYG DRV YL
Sbjct: 1 MATTAMALSSSSFAGKAVKDLPS-SALFGEARVTMRKTAAKAKPVSSSSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 136/150 (90%), Gaps = 2/150 (1%)
Query: 6 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGE 63
MALSS +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE
Sbjct: 1 MALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTTAKPKGPSGSPWYGSDRVKYLGPFSGE 60
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 121 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 150
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
MA +TM+LSS +F GKAV PS + L R++MRKTA+K V+SGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPS-SSLFGEARVTMRKTAAKVKQVASGSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 135/156 (86%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L PS EL R +MRK A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQEL-GAARFTMRKAATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/155 (81%), Positives = 139/155 (89%), Gaps = 4/155 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA+STMALSS +F GKAV P+ +++ GR++MRKT +K SGSPWYG DRVKYLG
Sbjct: 1 MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 58
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA 153
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
M +TM+LSSS F GKAV PS + R++MRKTA +K VSSGSPWYG DRV YL
Sbjct: 1 MVATTMSLSSSSFAGKAVKNLPSPAHIGEA-RVTMRKTAVKAKQVSSGSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 155
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F GKAV PS + L R++MRKT +K+ VSSGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSSTFAGKAVKNVPS-SALFGEARVTMRKTTAKAKQVSSGSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLVHA 155
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSS +F GKAV PS + L R++MRKTA+K+ V SGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPS-SALFGEARVTMRKTAAKAKPVPSGSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/144 (86%), Positives = 132/144 (91%), Gaps = 2/144 (1%)
Query: 12 FVGKAVNLAPS-GNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLT 69
F G+AV L+PS +EL GR+SMRK A+K V+ SGSPWYG DRVKYLGPFSGEPPSYLT
Sbjct: 14 FAGQAVKLSPSSASELMGNGRVSMRKAATKKVAPSGSPWYGPDRVKYLGPFSGEPPSYLT 73
Query: 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 129
GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct: 74 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVW 133
Query: 130 FKAGAQIFSEGGLDYLGNPSLIHA 153
FKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 134 FKAGSQIFSEGGLDYLGNPSLIHA 157
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/143 (86%), Positives = 129/143 (90%), Gaps = 3/143 (2%)
Query: 11 SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTG 70
SF GKAV LAPS E+ GR SMRKT +K VSSGSPWYG DRVKYLGPFSGEPPSYLTG
Sbjct: 13 SFAGKAVKLAPSAPEV---GRASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTG 69
Query: 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 130
EFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALG VFPE L+RNGVKFGEAVWF
Sbjct: 70 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWF 129
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 130 KAGSQIFSEGGLDYLGNPSLIHA 152
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/140 (86%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKAV L PS E+ GR+SMRKT +K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFP
Sbjct: 16 GKAVKLGPSAPEV---GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 72
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG
Sbjct: 73 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 132
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSL+HA
Sbjct: 133 SQIFSEGGLDYLGNPSLVHA 152
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L PS EL G R +MRK+A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQEL-GGARFTMRKSATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F K V PS + L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSSSFARKMVENIPS-SALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L PS EL G R +MRK+A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQEL-GGARFTMRKSATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/140 (87%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKAV LAPS E+ GR+SMRKT +K SSGSPWYG DRVKYLGPFSGE PSYLTGEFP
Sbjct: 16 GKAVKLAPSAPEV---GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFP 72
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG
Sbjct: 73 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 132
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSL+HA
Sbjct: 133 SQIFSEGGLDYLGNPSLVHA 152
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/154 (81%), Positives = 130/154 (84%), Gaps = 4/154 (2%)
Query: 4 STMALSSSFVGKAVNLAP----SGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
++M LSS+F KAV L S GR+SMRK A K SGSPWYG DRVKYLGP
Sbjct: 2 ASMTLSSTFTSKAVPLNGITEFSSATCCGNGRVSMRKAAGKVADSGSPWYGPDRVKYLGP 61
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 62 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 121
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 122 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 155
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F GKAV PS + L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSSAFAGKAVKNLPS-SALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE+IH RWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 137/154 (88%), Gaps = 4/154 (2%)
Query: 4 STMALSS-SFVGKAVNLAPSGNELSNGG-RISMRKTASK--SVSSGSPWYGLDRVKYLGP 59
STMALSS S G AV L PS + +G R +MRKTA+K +VSSGSPWYG DRVKYLGP
Sbjct: 3 STMALSSPSLAGTAVKLTPSSSSGVSGDGRFTMRKTAAKPKTVSSGSPWYGPDRVKYLGP 62
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 123 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 134/156 (85%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRK--TASKSVSSGSPWYGLDRVKYL 57
MA S+MAL+S + GK V L PS EL + +MRK T K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALTSPALAGKPVKLTPSSQELGVA-KFTMRKGATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F GKAV PS + L R++MRKTA+K+ VSS SPWYG DRV YL
Sbjct: 1 MAATTMSLSSSSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHA 155
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 136/156 (87%), Gaps = 5/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMAL+S + VGK S ++ GRI+MRKTA+K +SGSPWYG DRV YL
Sbjct: 1 MAGATMALTSRALVGKPATT--STRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYL 58
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 59 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F K V PS + L R++MRKTA+K+ VSSGSPWYG DRV YL
Sbjct: 1 MAATTMSLSSSSFARKMVENIPS-SALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPS +HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSFVHA 155
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/142 (86%), Positives = 128/142 (90%), Gaps = 2/142 (1%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGE 71
G+AV APS +EL GR+SMRKTA+ K SGSPWYG DRVKYLGPFSGE PSYLTGE
Sbjct: 2 GQAVKAAPSNSELLGNGRVSMRKTAAPKKVAPSGSPWYGPDRVKYLGPFSGEAPSYLTGE 61
Query: 72 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 131
FPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 62 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 121
Query: 132 AGAQIFSEGGLDYLGNPSLIHA 153
AGAQIFSEGGLDYLGNPSL+HA
Sbjct: 122 AGAQIFSEGGLDYLGNPSLVHA 143
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 136/155 (87%), Gaps = 3/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK-SVSSGSPWYGLDRVKYLG 58
MAT+TMALSS +F GKAV PS + L R++MRKT +K +SGSPWYG DRV YLG
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPS-SALFGEARVTMRKTGAKPKATSGSPWYGPDRVLYLG 59
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGV+FGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSSS F GKAV P + L R++MRKTA+K+ +SS +PWYG DRV YL
Sbjct: 1 MAATTMSLSSSTFAGKAVKNVPL-SALFGEARVTMRKTAAKAKQLSSSNPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/154 (80%), Positives = 134/154 (87%), Gaps = 5/154 (3%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSN----GGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
+ MALSS+F GK V L + ELS+ GR++MRK+ + SSGSPWYG DRVKYLGP
Sbjct: 2 AAMALSSTFTGKVVPLN-AFTELSSSVRSNGRVTMRKSGKPAASSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYL GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61 FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/140 (86%), Positives = 128/140 (91%), Gaps = 2/140 (1%)
Query: 16 AVNLAPSGNELSNGGRISMRKTASK--SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
AV L PS + +S GR +MRKT +K +VSSGSPWYG DRVKYLGPFSGE PSYLTGEFP
Sbjct: 2 AVKLTPSSSGVSGDGRFTMRKTVAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFP 61
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG
Sbjct: 62 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 121
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSL+HA
Sbjct: 122 SQIFSEGGLDYLGNPSLVHA 141
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/140 (85%), Positives = 127/140 (90%), Gaps = 3/140 (2%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKAV L PS E+ GR+SMRKT +K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFP
Sbjct: 16 GKAVKLGPSAPEV---GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFP 72
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFA+N ELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG
Sbjct: 73 GDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 132
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNPSL+HA
Sbjct: 133 SQIFSEGGLDYLGNPSLVHA 152
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/154 (81%), Positives = 132/154 (85%), Gaps = 2/154 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA +TMALSSS F GKAV S +E+ R+SMRKTA+ GSPWYG DRVKYLGP
Sbjct: 1 MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLAR 119
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HA
Sbjct: 120 NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHA 153
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 135/156 (86%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMAL+S + VGK A S ++ GRI+MRKTA K +SGSPWYG DRV YL
Sbjct: 1 MAAATMALTSRALVGKP---ATSTRDVFGEGRITMRKTAGKPKPAASGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 58 GPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/134 (87%), Positives = 124/134 (92%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWD 79
+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWD
Sbjct: 5 SPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 64
Query: 80 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 139
TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSE
Sbjct: 65 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 124
Query: 140 GGLDYLGNPSLIHA 153
GGLDYLGNPSL+HA
Sbjct: 125 GGLDYLGNPSLVHA 138
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/143 (84%), Positives = 130/143 (90%), Gaps = 2/143 (1%)
Query: 12 FVGKAVNLAPSGNELSNGGRISMRK-TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTG 70
FVGKA+ L+PS ++ G R++MRK T KSV SGSPWYG DRVKYLGPFSGE PSYLTG
Sbjct: 13 FVGKAIKLSPSTQDIGVG-RVTMRKATTKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTG 71
Query: 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 130
EFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWF
Sbjct: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWF 131
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 132 KAGSQIFSEGGLDYLGNPSLVHA 154
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 135/156 (86%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMAL+S + VGK A S ++ GRI+MRKTA K +SGSPWYG DRV YL
Sbjct: 1 MAAATMALTSRALVGKP---ATSTRDVFGEGRITMRKTAGKPKPAASGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 58 GPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 153
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSS +F GKAV S + L R++MRKT +K+ V+S SPWYG DRV YL
Sbjct: 1 MAAATMSLSSPAFAGKAVKNV-SLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 136/156 (87%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM+LSS +F GKAV S + L R++MRKT +K+ V+S SPWYG DRV YL
Sbjct: 1 MAAATMSLSSPAFAGKAVKNV-SLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 135/157 (85%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPS-GNELSNGGRISMRKTASK---SVSSGSPWYGLDRVKY 56
MA +TMALSS + +A APS + L RI+MRKTA+K + SSGSPWYG DRV Y
Sbjct: 1 MAAATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 248 bits (632), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 135/156 (86%), Gaps = 4/156 (2%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TM LSSS F GKAV P + L R++MRKTA+K+ VSS SPWYG DRV YL
Sbjct: 1 MAATTMYLSSSTFAGKAVKNVPL-SALFGEARVTMRKTAAKAKQVSSSSPWYGADRVLYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP S EPPSYLTG+FPGDYGWDTAGLSADPETF+KNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 60 GPLSREPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 138/155 (89%), Gaps = 3/155 (1%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLG 58
MA STMALSSS VGKA+ L+PS +L G RI+MRKT +K + SGS WYG DRVKYLG
Sbjct: 1 MAASTMALSSSSMVGKAIKLSPSTPDLVMG-RITMRKTTTKKTAPSGSQWYGPDRVKYLG 59
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 60 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 134/156 (85%), Gaps = 8/156 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STM++SS+ G + + G GRI+MRKTA+K +SGSPWYG DRVKYL
Sbjct: 1 MAASTMSISSTAMAGTPIKVGSFGE-----GRITMRKTAAKPKVAASGSPWYGPDRVKYL 55
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 116 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 151
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/155 (81%), Positives = 135/155 (87%), Gaps = 3/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK-SVSSGSPWYGLDRVKYLG 58
MAT+TM LSS +F GKAV PS + L R++MRKT +K V+SGSPWYG DRV YLG
Sbjct: 1 MATTTMTLSSPAFAGKAVKNMPS-SALFGDARMTMRKTGAKPKVASGSPWYGPDRVLYLG 59
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
P SGEPPSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 60 PLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGV+FGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 135/157 (85%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPS-GNELSNGGRISMRKTASK---SVSSGSPWYGLDRVKY 56
MA +TMALSS + +A APS + L RI+MRKTA+K + SSGSPWYG DRV Y
Sbjct: 1 MAAATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE+IH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 134/155 (86%), Gaps = 3/155 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK-SVSSGSPWYGLDRVKYLG 58
MAT+TMALSS +F GKAV PS L R++MRKT +K +SGSPWYG DRV YLG
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPSSG-LFGEARMTMRKTGAKPKAASGSPWYGPDRVLYLG 59
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
P SGEPPSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLA
Sbjct: 60 PLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/158 (79%), Positives = 136/158 (86%), Gaps = 6/158 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLA--PSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVK 55
MA S+MALSS + GK V + PS EL G R +MRK+A+ K SSGSPWYG DRVK
Sbjct: 1 MAASSMALSSPTLTGKPVETSANPSSQEL-GGARFTMRKSATTKKVASSGSPWYGPDRVK 59
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE
Sbjct: 60 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPE 119
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 120 LLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 157
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/124 (94%), Positives = 120/124 (96%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GR+SMRKTASK+VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN S
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQS 130
Query: 150 LIHA 153
LIHA
Sbjct: 131 LIHA 134
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/124 (94%), Positives = 120/124 (96%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GR+SMRKTASK+VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN S
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYLGNQS 130
Query: 150 LIHA 153
LIHA
Sbjct: 131 LIHA 134
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/159 (81%), Positives = 138/159 (86%), Gaps = 9/159 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG----GRISMRKTASKSV--SSGSPWYGLDRV 54
MA++ +A SS+F G+ V L P NE G GRI+MRKTASK V SSGSPWYG DRV
Sbjct: 4 MASAGVA-SSAFAGQIV-LKPQ-NEFVGGVHGEGRITMRKTASKKVVASSGSPWYGPDRV 60
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 61 KYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 120
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELL+RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSLIHA
Sbjct: 121 ELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA 159
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/156 (79%), Positives = 132/156 (84%), Gaps = 8/156 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STMA+SS+ G + + G GRI+MRKT K +SGSPWYG DRVKYL
Sbjct: 1 MAASTMAISSTAMAGTPIKVGSFGE-----GRITMRKTVGKPKVAASGSPWYGPDRVKYL 55
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 116 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 151
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/156 (78%), Positives = 134/156 (85%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMA++S + VGK A ++ GRI+MRKTA+K +SGSPWYG DRV YL
Sbjct: 1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 58 GPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/156 (78%), Positives = 134/156 (85%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMA++S + VGK A ++ GRI+MRKTA+K +SGSPWYG DRV YL
Sbjct: 1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 58 GPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 126/159 (79%), Positives = 135/159 (84%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSS-SFVGKAVNLA---PSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRV 54
MA +TMALSS + G V ++ P G GRI+MRKTA+K +SGSPWYG DRV
Sbjct: 1 MAAATMALSSPAMAGTPVKVSRATPFGE-----GRITMRKTAAKPKVSASGSPWYGSDRV 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 56 LYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 116 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 122/147 (82%), Positives = 129/147 (87%), Gaps = 3/147 (2%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPS 66
SSSF GKAV PS + L R++MRKTA+K+ VSS SPWYG DRV YLG SGEPPS
Sbjct: 5 SSSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGSLSGEPPS 63
Query: 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 126
YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE
Sbjct: 64 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 123
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AVWF AG+QIFSEGGLDYLGNPSL+HA
Sbjct: 124 AVWFMAGSQIFSEGGLDYLGNPSLVHA 150
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/152 (82%), Positives = 132/152 (86%), Gaps = 6/152 (3%)
Query: 5 TMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFS 61
TM LSS+ F GKAVN+ S L R++MRKTA+K +SGSPWYG DRV YLGP S
Sbjct: 1 TMGLSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKPKPAASGSPWYGPDRVLYLGPLS 57
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNG
Sbjct: 58 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 117
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 149
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/156 (78%), Positives = 132/156 (84%), Gaps = 8/156 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA STMA+SS+ G + + G GRI+MRKT K +SGSPWYG DRVKYL
Sbjct: 1 MAASTMAISSTAMAGTPIKVGSFGE-----GRITMRKTVGKPKVAASGSPWYGPDRVKYL 55
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 116 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 151
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/147 (82%), Positives = 128/147 (87%), Gaps = 4/147 (2%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPS 66
S + VGK S ++ GRI+MRKTA+K +SGSPWYG DRV YLGPFSGEPPS
Sbjct: 11 SRALVGKPATT--STRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPS 68
Query: 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 126
YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE
Sbjct: 69 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 128
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPSLIHA 155
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/158 (80%), Positives = 135/158 (85%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPS-GNELSNGGRISMRKTASK---SVSSGSPWYGLDRVKY 56
MA +TMALSS + +A APS + L RI+MRKTA+K + SSGSPWYG DRV Y
Sbjct: 1 MAAATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLY 57
Query: 57 LGPFSG-EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
LGP SG EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 LGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 155
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 137/157 (87%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ S R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/157 (82%), Positives = 138/157 (87%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSV---SSGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ S L R++MRKTA+K+ SSGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/157 (79%), Positives = 134/157 (85%), Gaps = 11/157 (7%)
Query: 3 TSTMALSS-SFVGKAVNLA---PSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKY 56
T+TMALSS + G V ++ P G GRI+MRKTA+K +SGSPWYG DRV Y
Sbjct: 2 TATMALSSPAMAGTPVKVSRATPFGE-----GRITMRKTAAKPKVSASGSPWYGSDRVLY 56
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL
Sbjct: 57 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 117 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 153
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/156 (79%), Positives = 133/156 (85%), Gaps = 9/156 (5%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMALSS + GKA ++ GRI+MRK+A+K +SGSPWYG DRV YL
Sbjct: 1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYL 54
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 55 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 114
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 115 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 150
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/158 (78%), Positives = 131/158 (82%), Gaps = 11/158 (6%)
Query: 2 ATSTMALSSSFVG----KAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVK 55
A +TMALSS + KA AP G GRI+MRKTA K +S SPWYG DRV
Sbjct: 3 AAATMALSSPAMAGTPVKASRAAPFGE-----GRITMRKTAGKPKVAASSSPWYGSDRVL 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGP SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 58 YLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 138/157 (87%), Gaps = 6/157 (3%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ PS + R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNV-PSSSAFGEA-RVTMRKTAAKAKPAAASGSPWYGPDRVLY 58
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 155
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 137/157 (87%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ S L R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/156 (78%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK A+K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 137/157 (87%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSV---SSGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ S L R++MRKTA+K+ SSGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 10 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYL 69
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 70 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 129
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 130 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 165
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/163 (74%), Positives = 133/163 (81%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG-------RISMRKTASK---SVSSGSPWYG 50
MAT + + G+ +L P N+L G R++MRK+A+K + +S SPWYG
Sbjct: 3 MATCGIGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSFASASPSPWYG 62
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 122
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 123 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 165
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/145 (80%), Positives = 126/145 (86%), Gaps = 3/145 (2%)
Query: 11 SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYL 68
+ GK + L PS EL R +MRK+A+ K SSGSPWYG DRVKYLGPFSGE PSYL
Sbjct: 15 TLAGKQLKLNPSSQEL-GAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYL 73
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
TGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAV
Sbjct: 74 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV 133
Query: 129 WFKAGAQIFSEGGLDYLGNPSLIHA 153
WFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 134 WFKAGSQIFSEGGLDYLGNPSLVHA 158
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/155 (77%), Positives = 129/155 (83%), Gaps = 10/155 (6%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISM---------RKTASK-SVSSGSPWYGLDRVKYLG 58
S SF GKAV ++PS + GRI+M R TA K ++ SPWYG DRVKYLG
Sbjct: 12 SPSFAGKAVKISPSNVLIFGEGRITMQDKTTSNRPRTTAGKLRPATSSPWYGPDRVKYLG 71
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELLA
Sbjct: 72 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLA 131
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 132 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 166
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 8 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYL 67
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 68 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 127
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 128 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/150 (79%), Positives = 126/150 (84%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK +K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/158 (80%), Positives = 134/158 (84%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSS--SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSS---GSPWYGLDRVK 55
MA STMALSS + GKAV A E GR++MRK+A+K + GSPWYG DRV
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGE----GRVTMRKSAAKPKPAAASGSPWYGADRVL 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSV---SSGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK+A+K +S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLVGVGAGVHGESRVTMRKSATKKSVVSASPSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 160
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 130/151 (86%), Gaps = 6/151 (3%)
Query: 6 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFSG 62
MA++S + VGK A ++ GRI+MRKTA+K +SGSPWYG DRV YLGP SG
Sbjct: 1 MAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSG 57
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV
Sbjct: 58 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 117
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
KFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 118 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 148
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 128/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R+ MRK +K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVMMRKATTKKVSVSASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/150 (80%), Positives = 129/150 (86%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASK-SVSSGSP--WYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+A+K SV+S SP WYG DRV YLGPFSGE
Sbjct: 11 GQXSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVASASPSPWYGPDRVLYLGPFSGE 70
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK
Sbjct: 71 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 130
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 131 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 160
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 121/150 (80%), Positives = 129/150 (86%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASK-SVSSGSP--WYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+A+K SV+S SP WYG DRV YLGPFSGE
Sbjct: 11 GQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVASASPSPWYGPDRVLYLGPFSGE 70
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK
Sbjct: 71 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 130
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 131 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 160
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/156 (77%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSV---SSGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK+A+K +S SPWYG DRV YL
Sbjct: 2 SCAFAGGQISSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVVSASPSPWYGPDRVLYL 61
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 62 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 121
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 122 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 157
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/158 (78%), Positives = 133/158 (84%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASK---SVSSGSPWYGLDRVKY 56
MA +TMALSS + GKA ++ GRI+MRK+A+K + SSGSPWYG DRV Y
Sbjct: 1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASSGSPWYGADRVLY 54
Query: 57 LGPFSG-EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
LGP SG EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG LGCVFPE
Sbjct: 55 LGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 115 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 152
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/154 (81%), Positives = 131/154 (85%), Gaps = 10/154 (6%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSSS G+A+ LAPS EL G R+SMRKTA K+VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEF GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 60 FSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 111
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 112 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 145
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/137 (82%), Positives = 124/137 (90%), Gaps = 1/137 (0%)
Query: 18 NLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDY 76
L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDY
Sbjct: 1 KLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDY 60
Query: 77 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 136
GWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QI
Sbjct: 61 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 120
Query: 137 FSEGGLDYLGNPSLIHA 153
FS+GGLDYLGNPSL+HA
Sbjct: 121 FSDGGLDYLGNPSLVHA 137
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/144 (81%), Positives = 125/144 (86%), Gaps = 3/144 (2%)
Query: 12 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLT 69
F GKAV P + L R++MRKT +K+ VSS SPWYG DRV YLGP SGEPPSYLT
Sbjct: 13 FAGKAVKNVPL-STLFGEARVTMRKTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLT 71
Query: 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 129
GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG +FPELLARNGVKFGEAVW
Sbjct: 72 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVW 131
Query: 130 FKAGAQIFSEGGLDYLGNPSLIHA 153
FKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 132 FKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 119/150 (79%), Positives = 128/150 (85%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASK---SVSSGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+A+K + +S SPWYG DRV YLGPFSGE
Sbjct: 11 GQLSSLKPHTNQLLGVGAGIHGESRVTMRKSATKKSFASASPSPWYGPDRVLYLGPFSGE 70
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK
Sbjct: 71 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 130
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 131 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 160
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 117/126 (92%), Gaps = 3/126 (2%)
Query: 31 RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
R++MRK +K VS S SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 19 RVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 78
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 79 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 138
Query: 148 PSLIHA 153
PSL+HA
Sbjct: 139 PSLVHA 144
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/157 (81%), Positives = 137/157 (87%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ PS + R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNV-PSSSAFE--ARVTMRKTAAKAKPAAASGSPWYGPDRVLY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LARNGVKFGEAV FKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 118 LARNGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/150 (79%), Positives = 126/150 (84%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK A+K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/150 (78%), Positives = 127/150 (84%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+++K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/156 (76%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK+++K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/150 (79%), Positives = 127/150 (84%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+++K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTKKVSASASPSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 163
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/153 (82%), Positives = 133/153 (86%), Gaps = 7/153 (4%)
Query: 5 TMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSV---SSGSPWYGLDRVKYLGPF 60
TMALSS+ F GKAVN+ S L R++MRKTA+K+ SSGSPWYG DRV YLGP
Sbjct: 42 TMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPL 98
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARN
Sbjct: 99 SGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 158
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 159 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 191
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 149 SLIHA 153
SL+HA
Sbjct: 124 SLVHA 128
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 149 SLIHA 153
SL+HA
Sbjct: 124 SLVHA 128
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 149 SLIHA 153
SL+HA
Sbjct: 124 SLVHA 128
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/158 (79%), Positives = 133/158 (84%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSS--SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSS---GSPWYGLDRVK 55
MA STMALSS + GKAV A E GR++MRK+A+K + GSPWYG DRV
Sbjct: 1 MAASTMALSSPAALAGKAVANAKVFGE----GRVTMRKSAAKPKPAAASGSPWYGADRVL 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGP SGEPPSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 149 SLIHA 153
SL+HA
Sbjct: 124 SLVHA 128
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/156 (76%), Positives = 128/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 10 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYL 69
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 70 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 129
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 130 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 165
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 149 SLIHA 153
SL+HA
Sbjct: 122 SLVHA 126
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 118/125 (94%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK+A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 149 SLIHA 153
SL+HA
Sbjct: 122 SLVHA 126
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 117/125 (93%), Gaps = 2/125 (1%)
Query: 31 RISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+ +MRK A+ K SSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 149 SLIHA 153
SL+HA
Sbjct: 124 SLVHA 128
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/156 (76%), Positives = 128/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K VS S SPWYG DRV YL
Sbjct: 5 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVPASTSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 125 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 160
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 128/156 (82%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVN-LAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYL 57
S +F G ++ L P N+L G R++MRK +K ++ S SPWYG DRV YL
Sbjct: 8 SCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYL 67
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 68 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELL 127
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 128 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/150 (78%), Positives = 125/150 (83%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK +K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/149 (79%), Positives = 126/149 (84%), Gaps = 9/149 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVSSGSP--WYGLDRVKYLGPFSGEP 64
GK +L P N+L G R++MRK+A+K +S SP WYG DRV YLGPFSGEP
Sbjct: 11 GKISSLKPHSNQLLGVGAGVHGESRVTMRKSATKKFASESPSPWYGPDRVLYLGPFSGEP 70
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKF
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 130
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 131 GEAVWFKAGAQIFSEGGLDYLGNPSLIHA 159
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 127/150 (84%), Gaps = 10/150 (6%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGE 63
G+ +L P N+L G R++MRK+++K VS S SPWYG DRV YLGPFSGE
Sbjct: 14 GQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGPFSGE 73
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPS+LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVK
Sbjct: 74 PPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 133
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 134 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 163
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/154 (76%), Positives = 129/154 (83%), Gaps = 8/154 (5%)
Query: 6 MALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTA-SKSVSSGSPWYGLDRVKYLGP 59
MA S+F G+ L P NE SNG R++MRKT + SV GSPWYG DRVKYLGP
Sbjct: 1 MAAPSTFAGQ-TGLKPQ-NEFVARNASNGSRVAMRKTGRASSVGGGSPWYGPDRVKYLGP 58
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL++
Sbjct: 59 FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSK 118
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NG+KFGEAVWFKAG+QIF EGGLDYLGNPSL+HA
Sbjct: 119 NGIKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA 152
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/125 (88%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Query: 30 GRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
GR++MRKT +K SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 9 GRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 68
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
TFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNP
Sbjct: 69 TFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNP 128
Query: 149 SLIHA 153
SL+HA
Sbjct: 129 SLVHA 133
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/122 (92%), Positives = 117/122 (95%), Gaps = 2/122 (1%)
Query: 34 MRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
MRKTA+K+ SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA
Sbjct: 1 MRKTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+
Sbjct: 61 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 120
Query: 152 HA 153
HA
Sbjct: 121 HA 122
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/154 (78%), Positives = 132/154 (85%), Gaps = 6/154 (3%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGS-PWYGLDRVKYLGP 59
MA +TM LS+ A+ LA + L GGRI+MRK+ +K+ SS PWYG DRV YLGP
Sbjct: 1 MAATTMTLSTP----AMKLARAATVL-GGGRITMRKSVAKASSSSGSPWYGSDRVLYLGP 55
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SG+PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 56 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 115
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 116 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 149
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/128 (85%), Positives = 118/128 (92%), Gaps = 1/128 (0%)
Query: 27 SNGGRISMRKTA-SKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
SNG RI+MRKT + SV GSPWYG DRVKYLGPFSGE PSYLTGE+PGDYGWDTAGLSA
Sbjct: 34 SNGSRIAMRKTGKASSVGGGSPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSA 93
Query: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 145
DPETFAKNRELEVIH RWAMLGALGCVFPELL++NG+KFGEAVWFKAG+QIF EGGLDYL
Sbjct: 94 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYL 153
Query: 146 GNPSLIHA 153
GNPSL+HA
Sbjct: 154 GNPSLVHA 161
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVNL-APSGNELSNGG-------RISMRKTASK---SVSSGSPWYGLDRVKYL 57
S +F G ++L P N+L G R++MRK+A+K + +S SPWYG DRV YL
Sbjct: 5 SCAFAGGKISLLKPHTNQLLGVGAGVHGESRVTMRKSAAKKSFASASPSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A+NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 125 AKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 160
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/135 (83%), Positives = 121/135 (89%), Gaps = 1/135 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS SF G+AV L+PS +E++ GRI+MRK +KS S SPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSFAGQAVKLSPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGA 134
NGVKFGEAVWFKAG+
Sbjct: 121 NGVKFGEAVWFKAGS 135
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 127/151 (84%), Gaps = 11/151 (7%)
Query: 14 GKAVNLAPSGNELSNGG-------RISMRKTAS-KSVS---SGSPWYGLDRVKYLGPFSG 62
G+ +L P N+L G R++MRK+++ K VS S SPWYG DRV YLGPFSG
Sbjct: 14 GQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKKVSASASPSPWYGPDRVLYLGPFSG 73
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGV
Sbjct: 74 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 133
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 134 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 164
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 130/156 (83%), Gaps = 11/156 (7%)
Query: 9 SSSFVGKAVNL-APSGNELSNGG-------RISMRKTASK---SVSSGSPWYGLDRVKYL 57
S +F G ++L P N+L G R++MRK+A+K + +S SPWYG DRV YL
Sbjct: 5 SCAFAGGKISLLKPHTNQLLGVGAGVHGESRVTMRKSAAKKSFASASPSPWYGPDRVLYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 65 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 124
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A+NGVKFGEAVWFKAGAQIFSEGGLD+LGNPSLIHA
Sbjct: 125 AKNGVKFGEAVWFKAGAQIFSEGGLDHLGNPSLIHA 160
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/141 (80%), Positives = 126/141 (89%), Gaps = 2/141 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSV-SSGSPWYGLDRVKYLG 58
MA STMALSS +F GKAV ++P+ +E+ GR++MRKT +K SGSPWYG DRVKYLG
Sbjct: 1 MAASTMALSSPAFAGKAVKISPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPG+YGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct: 61 PFSGEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 119 RNGVKFGEAVWFKAGAQIFSE 139
RNGVKFG+AVWFKAG+QIFSE
Sbjct: 121 RNGVKFGKAVWFKAGSQIFSE 141
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/122 (90%), Positives = 116/122 (95%), Gaps = 2/122 (1%)
Query: 34 MRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
MRKTA+K+ VSSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA
Sbjct: 1 MRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
KNRELE+IH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+
Sbjct: 61 KNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 120
Query: 152 HA 153
HA
Sbjct: 121 HA 122
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 132/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/163 (74%), Positives = 132/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+LIHA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLIHA 167
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/121 (91%), Positives = 114/121 (94%), Gaps = 2/121 (1%)
Query: 35 RKTASK--SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
RKTA K +V S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 1 RKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 60
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 153 A 153
A
Sbjct: 121 A 121
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/124 (89%), Positives = 116/124 (93%), Gaps = 2/124 (1%)
Query: 32 ISMRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
+SMRKTA+K +SGSPWYG DRVKYLGPFSGE PSYLTGEF GDYGWDTAGLSADPET
Sbjct: 1 VSMRKTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPET 60
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPS
Sbjct: 61 FAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 120
Query: 150 LIHA 153
L+HA
Sbjct: 121 LVHA 124
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 126/149 (84%), Gaps = 9/149 (6%)
Query: 14 GKAVNLAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYGLDRVKYLGPFSGEP 64
G+ ++ P N+L G R++MRK T KSV SS SPWYG DRV YLGPFSGEP
Sbjct: 19 GQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEP 78
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKF
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV++ SPWYG
Sbjct: 5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHA 167
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/122 (90%), Positives = 114/122 (93%), Gaps = 2/122 (1%)
Query: 34 MRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
MRKT K +SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA
Sbjct: 1 MRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLI
Sbjct: 61 KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI 120
Query: 152 HA 153
HA
Sbjct: 121 HA 122
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 132/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 132/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 127/153 (83%), Gaps = 2/153 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA S + ++SF+G+A+ P+ GGRI+MR+T + S WYG DR KYLGPF
Sbjct: 1 MAASALHQTTSFLGQALVSRPAAAAADAGGRITMRRTVKSAPQS--IWYGPDRPKYLGPF 58
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+LA+N
Sbjct: 59 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKN 118
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 119 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 151
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV++ SPWYG
Sbjct: 5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHA 167
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 126/149 (84%), Gaps = 9/149 (6%)
Query: 14 GKAVNLAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYGLDRVKYLGPFSGEP 64
G+ ++ P N+L G R++MRK T KSV SS SPWYG DRV YLGPFSGEP
Sbjct: 19 GQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEP 78
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKF
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/121 (90%), Positives = 113/121 (93%), Gaps = 1/121 (0%)
Query: 34 MRKTASK-SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
MRKT +K S SPWYG DRVKYLGPFSGE PSYL+GEFPGDYGWDTAGLSADPETFAK
Sbjct: 1 MRKTVAKPKTVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAK 60
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIHCRWAMLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 120
Query: 153 A 153
A
Sbjct: 121 A 121
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 130/158 (82%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MATST+ S+F G+ + L P NEL NGGR+SMR+T + S WYG DR K
Sbjct: 1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HA
Sbjct: 116 LLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHA 153
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 110/112 (98%)
Query: 42 VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
VSSGSPWYG +RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC
Sbjct: 1 VSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 60
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 61 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 112
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 132/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MR+ T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMREATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/159 (74%), Positives = 129/159 (81%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ L PS NEL GGRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA-LKPS-NELVRKVGSVGGGRITMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/153 (74%), Positives = 130/153 (84%), Gaps = 4/153 (2%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA S + ++SF+G+A+ +G + GGRI+MR+T KSV S WYG DR KYLGPF
Sbjct: 1 MAASALHQTTSFLGQALVSRAAG--VDAGGRITMRRTV-KSVPQ-SIWYGPDRPKYLGPF 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+LA+N
Sbjct: 57 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKN 116
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 117 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 149
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 127/157 (80%), Gaps = 8/157 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIH
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 154
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/159 (72%), Positives = 129/159 (81%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+FVG+ V A S NEL GGR +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFVGQTV--AKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 129/158 (81%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+++ L P NELS RISMRKTASKS S S WYG DR K
Sbjct: 1 MAAATAMHSTALAGQSL-LKPV-NELSRKVGNVEARISMRKTASKS--SDSIWYGADRPK 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGCV PE
Sbjct: 57 YLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 117 LLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 154
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEG LDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGWLDYLGSPNLVHA 167
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 10/163 (6%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRV YLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 111 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L+HA
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHA 167
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/158 (73%), Positives = 127/158 (80%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL + RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC+FPE
Sbjct: 58 YLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 128/158 (81%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T ++ S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVR--IAPESIWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/153 (73%), Positives = 129/153 (84%), Gaps = 4/153 (2%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA S + ++SF+G+A+ +G + G RI+MR+T KSV S WYG DR KYLGPF
Sbjct: 1 MAASALHQTTSFLGQALVARAAG--VDAGDRITMRRTV-KSVPQ-SIWYGPDRPKYLGPF 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+LA+N
Sbjct: 57 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKN 116
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 117 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 149
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/121 (89%), Positives = 113/121 (93%), Gaps = 1/121 (0%)
Query: 34 MRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
MRKT +K SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+
Sbjct: 1 MRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAR 60
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+H
Sbjct: 61 NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVH 120
Query: 153 A 153
A
Sbjct: 121 A 121
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 128/158 (81%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MATST AL+S+F G+ L P NELS R+ M SK+ SGS WYG DR
Sbjct: 1 MATSTAALTSTFSGQ--QLKPV-NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPL 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PE
Sbjct: 57 YLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 117 LLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHA 154
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 110/117 (94%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 65 EVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 127/158 (80%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ NEL GGRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELVRKVGSFGGGRITMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ P NEL GGRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-RSAFAGQTALKQP--NELVRKVGGLGGGRITMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/156 (73%), Positives = 126/156 (80%), Gaps = 6/156 (3%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMA++S + VGK A ++ GRI+MRKTA+K SGSPWYG DRV YL
Sbjct: 1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+ LGCVFPELL
Sbjct: 58 GPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELL 117
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HA
Sbjct: 118 ARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHA 153
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 127/158 (80%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 127/158 (80%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MATST+ S+FVG+ L NEL NGGR SMR+T + S WYG DR K
Sbjct: 1 MATSTIQ-QSAFVGQ--TLLKQQNELVRKVGGNGGRFSMRRTVKSAPQS--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAG+QIF EGGLDYLGNP+LIHA
Sbjct: 116 ILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHA 153
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL +GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MATST+ S+F G+ + L P NEL NGGR SMR+T + S WYG DR K
Sbjct: 1 MATSTIQ-QSAFAGQTI-LKPQ-NELVRKFGGNGGRASMRRTVKSAPQS--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAG+QIF EGGLDYLGNP+LIHA
Sbjct: 116 ILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHA 153
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/114 (93%), Positives = 109/114 (95%)
Query: 40 KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
K VSS SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 64
Query: 100 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 65 HSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 118
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALQQTTSFLGTA----PRRDELVRRVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL +GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 128/158 (81%), Gaps = 7/158 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+ V L P NELS R++MR+T SKS S S WYG DR K
Sbjct: 1 MAGATAMHSTALAGQGV-LKPV-NELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPK 58
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 59 FLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 118
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 6/158 (3%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELS---NGG--RISMRKTASKSVSSGSPWYGLDRVK 55
MAT+ A++S+ + L P +ELS N G R++MRKT SKS S S WYG DR K
Sbjct: 1 MATAATAMNSTVLAGQALLKPV-SELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPK 59
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 60 FLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 119
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 120 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 157
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ S NEL NGGR +MR+T + S WYG DR
Sbjct: 1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/123 (90%), Positives = 114/123 (92%), Gaps = 3/123 (2%)
Query: 34 MRK-TASKSV--SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
MRK T KSV SS SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 1 MRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 60
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P+L
Sbjct: 61 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNL 120
Query: 151 IHA 153
+HA
Sbjct: 121 VHA 123
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 126/158 (79%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQISSLAGQTL-LRPQQNELVSKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/159 (73%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ L P NEL GGRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-RSAFAGQTA-LKPQ-NELVRKIGSLGGGRITMRRTVRSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ NEL GGR+SMR+T + +S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 132/160 (82%), Gaps = 13/160 (8%)
Query: 1 MATSTMALSSSFVGK-AVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDR 53
MAT+ + SSF G+ ++NL+ NE GRI+MR+T KSV + S WYG DR
Sbjct: 1 MATTALQ-HSSFAGQTSLNLS---NEFIRKVGSFGEGRITMRRTV-KSVPA-SIWYGPDR 54
Query: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 113
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF
Sbjct: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 114 PELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
PE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P ++L GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDDLVRSVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 7/158 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G++ L NELS R++MR+T SKS S S WYG DR K
Sbjct: 1 MAAATAMHSTALAGQS--LVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPK 58
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 59 FLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 118
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDRV 54
MAT + S+FVG+AV S NE GRI+MR+T + S WYG DR
Sbjct: 1 MATCAIQ-QSAFVGQAV--GKSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 128/158 (81%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P ++L +GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDDLVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE+IH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P ++L GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDDLVRSVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 109/117 (93%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALG VFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 65 EVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 124/158 (78%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MATS + S+ G+ NEL GGRISM +T + S WYG DR K
Sbjct: 1 MATSALQ-QSALAGRTA--LKQQNELVKKVGVFGGRISMHRTVKSTPQS--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 153
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 125/158 (79%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL + RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 58 YLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHA
Sbjct: 118 LLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHA 155
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P ++L GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDDLVRSVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 152
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+++ NELS+ R+SMRKT SKS S S WYG DR K
Sbjct: 1 MAAATAMHSTTLAGQSLF---RFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 58 WLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 118 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 155
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 111/121 (91%), Gaps = 2/121 (1%)
Query: 35 RKTASKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
+ T KSV++ SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 2 KATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 61
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIH
Sbjct: 62 NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIH 121
Query: 153 A 153
A
Sbjct: 122 A 122
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 126/159 (79%), Gaps = 8/159 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDRV 54
MA +T S++ G++ L NELS R++MR+T SKS S + WYG DR
Sbjct: 1 MAAATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRP 58
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ P
Sbjct: 59 KFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTP 118
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 ELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 157
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/154 (70%), Positives = 125/154 (81%), Gaps = 3/154 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-GGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA S + ++SF+G A + + GGRI+MR+T + S WYG DR KYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRRDDVVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGP 58
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELE+IH RWAMLGALGCVFPE+L++
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSK 118
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 125/158 (79%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQISSLAGQTL-LRPQQNELVSKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 155
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+FVG+AV S NE RI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFVGQAV--GKSQNEFVRKVGSCGESRITMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSY TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SSF G+ L PS NEL S GGR++MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSSFAGQTA-LKPS-NELLRKVGVSGGGRVTMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 127/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SSF G+ L PS NEL S GGR++MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSSFAGQTA-LKPS-NELLRKVGVSGGGRVTMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 126/158 (79%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MATS + S+F G+ + +EL GGR+SMR+T + S WYG DR K
Sbjct: 1 MATSAIQ-QSAFTGQTA--LKNRDELVRKVGVVGGRVSMRRTVKSAPQS--IWYGADRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LL++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 LLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 153
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGAA----PRRDELVRRVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEF GDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 126/158 (79%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MATS + SSF G+ L PS + L S GGR++MR+T + S WYG DR K
Sbjct: 1 MATSAIQ-QSSFAGQTA-LKPSNDLLRKAGVSGGGRVTMRRTVKSTPQS--IWYGPDRPK 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FPE
Sbjct: 57 YLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 117 ILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRHVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NREL VIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGAA----PRRDELVRRVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEF GDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 126/158 (79%), Gaps = 7/158 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G++ L NELS R++MR+T +KS S S WYG DR K
Sbjct: 1 MAAATAMHSTALAGQS--LFQPVNELSRKVGNVDSRVTMRRTVNKSAGSDSIWYGADRPK 58
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 59 FLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 118
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SS+F G+ NEL +GGR +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-SSAFAGQTS--LKQQNELVRKVGNFSGGRATMRRTVKSTPQS--IWYGADRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ L P NEL GG I+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA-LKPQ-NELVRKVGSFGGGHITMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/127 (81%), Positives = 113/127 (88%)
Query: 27 SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
S+ R++MR+T +KS S S WYG DR KYLGPFSGE PSYL GEF GDYGWDTAGLS+D
Sbjct: 30 SSQARVTMRRTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSD 89
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
PETFA+NRELEVIH RWAMLGALGCV PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLG
Sbjct: 90 PETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLG 149
Query: 147 NPSLIHA 153
NPSL+HA
Sbjct: 150 NPSLVHA 156
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 125/159 (78%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ S NEL GGR +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/154 (72%), Positives = 121/154 (78%), Gaps = 3/154 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-GRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA T S++ G+ S NELS G + R T K+ SS S WYG DR KYLGP
Sbjct: 1 MAACTATHSTALAGQTA--LKSINELSRKVGNVQARVTMRKASSSDSIWYGADRPKYLGP 58
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
SGE PSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGCV PELLA+
Sbjct: 59 LSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAK 118
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 119 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 152
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G A L P NEL GGR +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGSAA-LKPQ-NELVKKTGSFTGGRFTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EVLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 7/140 (5%)
Query: 19 LAPSGNELS-----NGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
L P NEL + RI+MR+T + S WYG DR KYLGPFS + PSYLTGEFP
Sbjct: 18 LRPQHNELVRKVGMSQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFP 75
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+ GVKFGEAVWFKAG
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAG 135
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
AQIFSEGGLDYLGNP+LIHA
Sbjct: 136 AQIFSEGGLDYLGNPNLIHA 155
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 108/117 (92%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SS SPW+G D VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNREL
Sbjct: 1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 60
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 61 EVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 117
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 125/158 (79%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MATS + SSF G+ L PS + + GGR++MR+T + S WYG DR K
Sbjct: 1 MATSAIQ-QSSFAGQTA-LKPSSDLIQKVGVLGGGRVTMRRTVKSTPQS--IWYGPDRPK 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FPE
Sbjct: 57 YLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 117 ILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 125/159 (78%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ NEL S GRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELVRKVGSSGDGRITMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGE+VWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 113/127 (88%), Gaps = 6/127 (4%)
Query: 29 GGRISMRKTASKSVSSGSP--WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
GGR SMR+T V S P WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 10 GGRFSMRRT----VKSAPPSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 65
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
PETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG
Sbjct: 66 PETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 125
Query: 147 NPSLIHA 153
NP+LIHA
Sbjct: 126 NPNLIHA 132
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 126/159 (79%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
M TS + SSF G+ L PS NEL S GGR++MR+T + S WYG DR
Sbjct: 1 MGTSAIQ-QSSFAGQTA-LKPS-NELLRKVGVSGGGRVTMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 102/123 (82%), Positives = 111/123 (90%)
Query: 31 RISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
R++MRKT SKS S S WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETF
Sbjct: 34 RVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETF 93
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
A+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL
Sbjct: 94 ARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 153
Query: 151 IHA 153
+HA
Sbjct: 154 VHA 156
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 125/158 (79%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MATS + S+F G+ NEL S+ GR MR+T + + S WYG DR K
Sbjct: 1 MATSALQ-QSAFAGQTA--LKQQNELVRRVGSSRGRFFMRRTTASTPKS--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+LA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 ILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 153
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 126/158 (79%), Gaps = 8/158 (5%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + GKAV L+P+ +E+ GRI+MRK + + SGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLAR
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLG----NPSLIHA 153
NGVKFGEAVW + F++ +G PSL+HA
Sbjct: 121 NGVKFGEAVWVQG---WFTDLQRRRIGPTWATPSLVHA 155
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 125/159 (78%), Gaps = 10/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SSF G+ L PS + L + GGRI MR+T + S WYG DR
Sbjct: 1 MATSAIQ-HSSFAGQTT-LKPSNDLLRKIGASNGGGRIIMRRTVKSTPQS--IWYGPDRP 56
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 117 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 155
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 125/159 (78%), Gaps = 10/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SSF G+ L PS + L + GGR+ MR+T + S WYG DR
Sbjct: 1 MATSAIQ-HSSFAGQTA-LKPSNDLLRKVGASNGGGRVVMRRTVKSTPQS--IWYGPDRP 56
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 117 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 155
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 9/158 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+++ L P NELS R++MR+T + S S WYG DR K
Sbjct: 1 MAAATAMHSTTLAGQSL-LKPV-NELSRKVGSSEARVTMRRTVKST--SDSIWYGADRPK 56
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSGE PSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 57 YLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 116
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 117 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 154
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MA S + S+F G+ P N+L GGR++MR+T + S WYG DR
Sbjct: 1 MAASAIQ-QSAFAGQTALKQP--NDLVRKVGSFGGGRVTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGE+VWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MA S + S+F G+ P N+L GGR++MR+T + S WYG DR
Sbjct: 1 MAASAIQ-QSAFAGQTALKQP--NDLVRKVGSFGGGRVTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGE+VWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 122/159 (76%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ GNEL GR +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGQTA--LKQGNELLRKAGGFGKGRFTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L RNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 124/159 (77%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ S NE GGR++MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKSQNEFIRKIGSFEGGRVTMRRTVKSAPQS--IWYGEDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+N ELEVIHCRWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/126 (80%), Positives = 112/126 (88%), Gaps = 2/126 (1%)
Query: 28 NGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
GGR++MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 3 EGGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 60
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 61 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGN 120
Query: 148 PSLIHA 153
P+LIHA
Sbjct: 121 PNLIHA 126
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 125/158 (79%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+++ L P NELS R+SMRK S S S WYG DR K
Sbjct: 1 MAAATAMHSTTLAGQSL-LKPV-NELSRKVGTSEARVSMRK----SSGSDSIWYGADRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGCV PE
Sbjct: 55 FLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 115 LLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 152
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 123/159 (77%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ NEL G R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELVRKVGALGGARFTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELLA+NGVKFGE+VWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 116 ELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 125/158 (79%), Gaps = 7/158 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA + S+ G+++ L P NELS R++MR+T SKS S S WYG DR K
Sbjct: 1 MAAAIAMHSTGLAGQSL-LKPV-NELSRRVGNVDARVTMRRTVSKSARSDSIWYGADRPK 58
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
+LGPFSGE PSYL GEF GDYGWDTAGLS+D ETFA+NRELEVIH RWAMLGALGC+ PE
Sbjct: 59 FLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPE 118
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 122/156 (78%), Gaps = 8/156 (5%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVKYL 57
+S +A SS V L P NELS R+ M A K SSG+ YG DR+ YL
Sbjct: 9 SSVVAFLSSSVFSGQQLKPV-NELSRKVGTSEARVQM--MAPKKSSSGNIRYGADRLLYL 65
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFSG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELL
Sbjct: 66 GPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELL 125
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A+NGVKFGEAVWFKAG+QIF++GGLDYLGNPSL+HA
Sbjct: 126 AKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHA 161
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 10/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SSF G+ L PS + + + GGR+ MR+T + S WYG DR
Sbjct: 1 MATSAIQ-HSSFAGQTA-LKPSNDLIRKVGASNGGGRVVMRRTVKSTPQS--IWYGPDRP 56
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 117 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 155
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/123 (84%), Positives = 110/123 (89%), Gaps = 2/123 (1%)
Query: 31 RISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
RI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 15 RITMRRTVRSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 72
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 73 AKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 132
Query: 151 IHA 153
IHA
Sbjct: 133 IHA 135
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 124/159 (77%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ NEL GGRI+MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELIRKIGGLGGGRITMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKN ELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 123/159 (77%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F G+ V NEL R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-HSAFAGQTV--LKQQNELVRKVGSFGSSRTTMRRTVKSTPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+LA+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 116 EILAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/123 (84%), Positives = 110/123 (89%), Gaps = 2/123 (1%)
Query: 31 RISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
RI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 3 RITMRRTVRSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 60
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 61 AKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 120
Query: 151 IHA 153
IHA
Sbjct: 121 IHA 123
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 124/158 (78%), Gaps = 11/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P ++L GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDDLVRSVGDFGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+L +NG+KFGEAVWFKAG QIF EGGLDYLG+P+L+HA
Sbjct: 115 ILCKNGLKFGEAVWFKAGPQIFFEGGLDYLGHPNLVHA 152
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/150 (72%), Positives = 122/150 (81%), Gaps = 11/150 (7%)
Query: 9 SSSFVGKAVNLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
++SF+G A P +EL GGRI+MR+T + S WYG DR KYLGPFS +
Sbjct: 2 TTSFLGTA----PRRDELVRRVGDFGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQ 55
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PSYLTGEF GDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct: 56 TPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 115
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 116 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 145
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/148 (72%), Positives = 121/148 (81%), Gaps = 11/148 (7%)
Query: 11 SFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPP 65
SF+G A P +EL +GGRI+MR+T + S WYG DR KYLGPFS + P
Sbjct: 1 SFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTP 54
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125
SYLTGEFPGDY WDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFG
Sbjct: 55 SYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 114
Query: 126 EAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 115 EAVWFKAGAQIFSEGGLDYLGNPNLVHA 142
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/124 (81%), Positives = 111/124 (89%), Gaps = 2/124 (1%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GR+SMR+T + S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 32 GRVSMRRTVKAAPQS--IWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGC+FPELL++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 90 FAKNRELEVIHARWAMLGALGCIFPELLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 149
Query: 150 LIHA 153
LIHA
Sbjct: 150 LIHA 153
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 10/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL------SNGGRISMRKTASKSVSSGSPWYGLDRV 54
MATS + SS F G+ L PS + L + GGR+ MR+T + S WYG DR
Sbjct: 1 MATSAIQYSS-FTGQTA-LKPSNDLLRKVGASNGGGRVIMRRTVKSTPQS--IWYGPDRP 56
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FP
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG+P+LIHA
Sbjct: 117 EILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHA 155
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 123/158 (77%), Gaps = 10/158 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + S+ + L P NEL NGGR MR+T + S WYG DR K
Sbjct: 1 MAASGIQFSA--IAGQTALKPQ-NELVRKVGGNGGRFFMRRTVKSAPQS--IWYGPDRPK 55
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 56 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 115
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LL++NGV+FGEAVWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 116 LLSKNGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLVHA 153
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/124 (82%), Positives = 112/124 (90%), Gaps = 2/124 (1%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GR SMR+T K+V S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 32 GRFSMRRTV-KAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPN 149
Query: 150 LIHA 153
L+HA
Sbjct: 150 LVHA 153
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/158 (73%), Positives = 130/158 (82%), Gaps = 7/158 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTASKSVSSGSPWYGLDRVK 55
MA +T S++ G+++ L P NELS R+SMRK+ASKS +S S WYG DR K
Sbjct: 1 MAAATAMHSTALAGQSL-LKPV-NELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPK 58
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGCV PE
Sbjct: 59 YLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 118
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 119 LLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/136 (78%), Positives = 114/136 (83%), Gaps = 4/136 (2%)
Query: 22 SGNELSN---GGRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYG 77
S NELS G ++ A K S SGS WYG DR YLGPFSG PPSYLTGEFPGDYG
Sbjct: 20 SVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYG 79
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
WDTAGLSADPETFAKNRELE+IH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIF 139
Query: 138 SEGGLDYLGNPSLIHA 153
+EGGLDYLGNPSL+HA
Sbjct: 140 AEGGLDYLGNPSLVHA 155
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 119/155 (76%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVN--LAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLG 58
MA S +F G+ VN A L+ G R++MR+ A+K+ S SPWYG DRVKYLG
Sbjct: 1 MAAMAKLSSPAFAGQMVNGDFARQLRALNVGERVNMRRGATKAPVSSSPWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFP G DPETFAKNRELEVIH RWAMLGALGCVFPELL+
Sbjct: 61 PFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELLS 120
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 155
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 125/157 (79%), Gaps = 11/157 (7%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL ++GGRI+MR+T + + WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGNSGGRITMRRTVKSAPQN--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTG+FPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPE
Sbjct: 55 YLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPE 114
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
+L++NGV FGEAVWFKAGAQIFSEGGLDYLGNP+L+
Sbjct: 115 ILSKNGVNFGEAVWFKAGAQIFSEGGLDYLGNPALVR 151
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 121/157 (77%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVG----KAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKY 56
MATS + S+F G K +N + GR +MR+T + S WYG DR KY
Sbjct: 1 MATSAIQ-QSAFTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQS--IWYGPDRPKY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPE+
Sbjct: 58 LGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 98/105 (93%), Positives = 102/105 (97%)
Query: 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
+G +R YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA
Sbjct: 23 FGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 82
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 83 LGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 127
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 120/157 (76%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVG----KAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKY 56
MAT+ S+F G K VN S GR +MR+T + S WYG DR KY
Sbjct: 1 MATTAFQ-QSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPQS--IWYGPDRPKY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALG VFPE+
Sbjct: 58 LGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEI 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 118 LEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 121/157 (77%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVG----KAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKY 56
MATS + S+F G K +N + GR +MR+T + S WYG DR KY
Sbjct: 1 MATSAIQ-QSAFAGQTALKQLNELVRKTGGAGKGRTTMRRTVKSAPQS--IWYGPDRPKY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPE+
Sbjct: 58 LGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
L +NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 118 LEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 120/159 (75%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG------RISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F GK GNE R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGKTG--LKQGNEFIRKAGSFGQSRFTMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 120/159 (75%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG------RISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F GK GNE R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGKTG--LKQGNEFIRKAGSFGQSRFTMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 120/159 (75%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG------RISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F GK GNE R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGKTG--LKQGNEFIRKAGSFGQSRFTMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 116 EILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 121/157 (77%), Gaps = 7/157 (4%)
Query: 1 MATSTMALSSSFVG----KAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKY 56
MATS + S+F G K +N + GR +MR+T + S WYG DR KY
Sbjct: 1 MATSAIQ-QSAFAGQTALKQLNELVRKTGGAGKGRTNMRRTVKSAPQS--IWYGPDRPKY 57
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPE+
Sbjct: 58 LGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
L +NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 118 LEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 154
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/135 (77%), Positives = 114/135 (84%), Gaps = 9/135 (6%)
Query: 24 NELS-----NGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGW 78
NELS N R++MRK+A S S WYG DR K+LGPFSGE PSYL GEF GDYGW
Sbjct: 22 NELSRRVGANEARVTMRKSAG----SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGW 77
Query: 79 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 138
DTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFS
Sbjct: 78 DTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFS 137
Query: 139 EGGLDYLGNPSLIHA 153
EGGLDYLGNPSL+HA
Sbjct: 138 EGGLDYLGNPSLVHA 152
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 120/159 (75%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG------RISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F GK GNE R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKAGNFGQARFTMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHA
Sbjct: 116 ELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHA 154
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 120/159 (75%), Gaps = 11/159 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGLDRV 54
MATS + S+F GK GNE R +MR+T + S WYG DR
Sbjct: 1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FP
Sbjct: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP 115
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHA
Sbjct: 116 ELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHA 154
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 115/140 (82%), Gaps = 7/140 (5%)
Query: 6 MALSSSFVGKAVNLAPS-GNELSNGGRISMRKTASK---SVSSGSPWYGLDRVKYLGPFS 61
MALSS + +A APS + L RI+MRKTA+K + SSGSPWYG DRV YLGP S
Sbjct: 1 MALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLS 57
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNG
Sbjct: 58 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 117
Query: 122 VKFGEAVWFKAGAQIFSEGG 141
VKFGEAVWFKAG+Q+ G
Sbjct: 118 VKFGEAVWFKAGSQVLQGRG 137
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 120/155 (77%), Gaps = 3/155 (1%)
Query: 2 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSS--GSPWYGLDRVKYLG 58
A+ M LSS S GKA+ L ++ G +MR T S+ S G PWYG DRVKY+G
Sbjct: 3 ASVIMTLSSPSLAGKALKLTGFTSKNLGEGGFTMRSTLSRPRQSITGGPWYGPDRVKYMG 62
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSG+ PSYLTGEFPGDYGWD+AGLSA+PETFAKNRELEVIH RWAMLG +GC+ PELL
Sbjct: 63 PFSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLE 122
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVK GEAVWFKAG+QIF + GL+YLG+P LIHA
Sbjct: 123 RNGVKIGEAVWFKAGSQIFRDEGLNYLGDPKLIHA 157
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA
Sbjct: 61 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 98
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/120 (83%), Positives = 109/120 (90%), Gaps = 2/120 (1%)
Query: 34 MRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
MR+T KSV S WYG DR KYLGPFS + PSYLTGEFPGDYGW+TAG+SADPETFA+N
Sbjct: 1 MRRTV-KSVPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARN 58
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RELEVIH RWAMLGALGCVFPE+LA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 59 RELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 118
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 113/138 (81%), Gaps = 8/138 (5%)
Query: 22 SGNELSNG------GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGD 75
S NELS R MR+T ++ + S WYG DR K+LGPFS + PSYLTGEFPGD
Sbjct: 21 SPNELSRKVGNLGEARTVMRRT--RASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGD 78
Query: 76 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
YGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NG+KFGEAVWFKAG+Q
Sbjct: 79 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKFGEAVWFKAGSQ 138
Query: 136 IFSEGGLDYLGNPSLIHA 153
IF EGGLDYLGNP+L+HA
Sbjct: 139 IFKEGGLDYLGNPNLVHA 156
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/108 (89%), Positives = 100/108 (92%)
Query: 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
S WYG DR KYLGPFS PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAM
Sbjct: 8 SIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM 67
Query: 106 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGALGCVFPELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 68 LGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 115
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/105 (88%), Positives = 100/105 (95%)
Query: 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
YG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGCVFPE+L++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 64 LGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 108
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/105 (88%), Positives = 100/105 (95%)
Query: 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
YG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 64 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 108
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 111/131 (84%), Gaps = 3/131 (2%)
Query: 26 LSNGGRISMRKT---ASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG 82
L++ ++ R+T ASK+ + S WYG +R +LG F+GEPPSYLTGEFPGDYGWDTAG
Sbjct: 15 LASTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAG 74
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 142
LSADPETF + RELE+IH RWAMLGALGC+ PELLA++G +FGEAVWFKAGAQIFSEGGL
Sbjct: 75 LSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGL 134
Query: 143 DYLGNPSLIHA 153
DYLGNPSL+HA
Sbjct: 135 DYLGNPSLVHA 145
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 114/145 (78%), Gaps = 4/145 (2%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MATS + ++SF+G+A+ P+G + G RI+MR+T + S WY DR KYL PF
Sbjct: 1 MATSALQQTTSFLGQALVSRPAG--VDAGSRITMRRTVKSAPQS--IWYDPDRPKYLAPF 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
S + SYLTGEFPGDYGWDTAGLSAD ETFA+NRELEVIH WAMLGALGCVFPE+LA+N
Sbjct: 57 SEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWWAMLGALGCVFPEVLAKN 116
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYL 145
VKFGE VWFKAGAQIFSEGGLDYL
Sbjct: 117 DVKFGEVVWFKAGAQIFSEGGLDYL 141
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 114/149 (76%), Gaps = 6/149 (4%)
Query: 6 MALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS-GEP 64
MA + +F KA+ ++ G+ KT +K SG WYG +R K+LGP+S
Sbjct: 1 MAFAVTFSRKALQVSAKAT-----GKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENAT 55
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGCV PELL++NGV+F
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 115
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 116 GEAVWFKAGAQIFQEGGLDYLGNPSLVHA 144
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 103/120 (85%)
Query: 34 MRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
MR+T + S WYG DR K+LGPFSG PSYL+GE+PGDYGWDTAGLSADPETFAK
Sbjct: 5 MRRTVKGKTTPTSMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKY 64
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RE+EVIH RWAMLGALGC+ PELLA+NGV FGEAVW+KAGAQIF+ GGLDYLGNPSL+HA
Sbjct: 65 REIEVIHARWAMLGALGCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHA 124
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 103/126 (81%), Gaps = 3/126 (2%)
Query: 31 RISMRKTASKSVSSGSP---WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
++ R+T + S +P WYG DR +LG F+GEPPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETF + RELE+IH RWAMLGALGC+FPELL GV FGE+VWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGN 140
Query: 148 PSLIHA 153
PSL+HA
Sbjct: 141 PSLVHA 146
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 105/121 (86%), Gaps = 6/121 (4%)
Query: 11 SFVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGLDRVKYLGPFSGEPPSY 67
+F GKAV L+P E+ G I+MRKTA K+ VSSGSPWYG DRVKYLGPFSGE PSY
Sbjct: 1 AFAGKAVKLSP---EVLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVKYLGPFSGEAPSY 57
Query: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 127
LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 58 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 117
Query: 128 V 128
V
Sbjct: 118 V 118
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 3/126 (2%)
Query: 31 RISMRKT---ASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
++ R+T ASK+ + S WYG +R +LG F+GEPPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETF + RELE+IH RWAMLGALGC+FPELL GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 140
Query: 148 PSLIHA 153
P+L+HA
Sbjct: 141 PNLVHA 146
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 3/126 (2%)
Query: 31 RISMRKT---ASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
++ R+T ASK+ + S WYG +R +LG F+GEPPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETF + RELE+IH RWAMLGALGC+FPELL GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 140
Query: 148 PSLIHA 153
P+L+HA
Sbjct: 141 PNLVHA 146
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 117/151 (77%), Gaps = 8/151 (5%)
Query: 6 MALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSV--SSGSPWYGLDRVKYLGPFS-G 62
MA + SF KA+ ++ G+ KTA+KS SSG +YG +R K+LGP+S
Sbjct: 1 MAFALSFSRKALQVSAKAT-----GKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSEN 55
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC+ PELLA+NG
Sbjct: 56 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGT 115
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 116 QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 146
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 104/126 (82%), Gaps = 3/126 (2%)
Query: 31 RISMRKT---ASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
R+ R+T ASK+ + S WYG +R +LG F+GEPPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 14 RVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 73
Query: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
ETF + RELE+IH RWAMLGALGC+FPELL GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 74 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 133
Query: 148 PSLIHA 153
+L+HA
Sbjct: 134 SNLVHA 139
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 93/95 (97%)
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPELL+
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 61 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 95
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 116/151 (76%), Gaps = 8/151 (5%)
Query: 6 MALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSV--SSGSPWYGLDRVKYLGPFS-G 62
MA + SF KA+ ++ G+ KTA+K SSG +YG +R K+LGP+S
Sbjct: 1 MAFALSFSRKALQVSAKAT-----GKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSEN 55
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC+ PELLA++G
Sbjct: 56 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGT 115
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 116 QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 146
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 104/128 (81%), Gaps = 10/128 (7%)
Query: 27 SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
++ GRISM S WYG DRVKYLGPFS + PSYL+GEFPGDYGWDTAGLSAD
Sbjct: 37 ASNGRISM---------SNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSAD 87
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
PE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAGAQIFSEGGLDYL
Sbjct: 88 PEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYL 147
Query: 146 GNPSLIHA 153
GNP+L+HA
Sbjct: 148 GNPNLVHA 155
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/129 (75%), Positives = 99/129 (76%), Gaps = 27/129 (20%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
+TMALSS FVGK SGSPWYG DRVKYLGPFSGE
Sbjct: 2 ATMALSSPFVGK---------------------------PSGSPWYGPDRVKYLGPFSGE 34
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL+RNGVK
Sbjct: 35 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVK 94
Query: 124 FGEAVWFKA 132
FGEAVWFKA
Sbjct: 95 FGEAVWFKA 103
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 116/156 (74%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSP-WYGLDRVKYLG 58
MA++ MA +S + V K L+ G S + + ++ G+ WYG DRVKYLG
Sbjct: 1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L
Sbjct: 61 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQ 120
Query: 119 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+ GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 121 KWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 156
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 103/122 (84%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
SMR+T K + S WYG DR ++LGPFSG+ PSYLTGEFPGDYGWDTAGLSADPETF +
Sbjct: 22 SMRRTQKKGSAPDSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDYGWDTAGLSADPETFRR 81
Query: 93 NRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
RELE+IH RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLDYLGN +L+
Sbjct: 82 YRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLV 141
Query: 152 HA 153
HA
Sbjct: 142 HA 143
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 103/122 (84%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
SMR+T KS + S WYG +R ++LGPFSG+ PSYLTGEFPGDYGWDTAGLSADPETF +
Sbjct: 22 SMRRTQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFRR 81
Query: 93 NRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
RE E+IH RWAMLGALGCV PE+LA+ GV FGE+VWFKAG+QIF EGGLDYLGN SL+
Sbjct: 82 YREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLV 141
Query: 152 HA 153
HA
Sbjct: 142 HA 143
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 113/156 (72%), Gaps = 3/156 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRI-SMRKTASKSVSSGSP-WYGLDRVKYLG 58
MA++ MA +S V G +N + + AS ++ G+ WYG DRVKYLG
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAAANASPLRDVAAAASGRITMGNDLWYGPDRVKYLG 60
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
Query: 119 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+ V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 156
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 115/153 (75%), Gaps = 9/153 (5%)
Query: 2 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS 61
+++T+ ++ F+G+ N P + ++ G S R T S + WYG DRVKYLGPFS
Sbjct: 9 SSTTVVKATPFLGQTKNANPLRDVVAMG---SARFTMSNDL-----WYGPDRVKYLGPFS 60
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-N 120
+ PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +
Sbjct: 61 AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWV 120
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E VWFKAG+QIFS+GGLDYLGNP+L+HA
Sbjct: 121 KVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHA 153
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 100/118 (84%), Gaps = 2/118 (1%)
Query: 38 ASKSVSSGS-PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
A++ V+ S WYG +R ++LGPFSG PSYL GE+PGDYGWDTAGLSADPETFA+ REL
Sbjct: 18 ATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTAGLSADPETFARYREL 77
Query: 97 EVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALGCV PELL NGV FGEAVWFKAGAQIF EGGLDYLGNPSLIHA
Sbjct: 78 EVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIHA 135
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS + G+AV L+P+ E+ + +MRKTASKSVSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 112
FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 110/133 (82%), Gaps = 2/133 (1%)
Query: 23 GNELSNGGRI-SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
G++++N + SMR+T KS + + WYG DR ++LGPFSG+ PSYLTGEFPGDYGWDTA
Sbjct: 11 GSQVANKKMVTSMRRTQKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTA 70
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEG 140
GLSADPETF + RE E+IH RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EG
Sbjct: 71 GLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEG 130
Query: 141 GLDYLGNPSLIHA 153
GLDYLGN +L+HA
Sbjct: 131 GLDYLGNSNLVHA 143
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/129 (71%), Positives = 105/129 (81%), Gaps = 6/129 (4%)
Query: 31 RISMRKTASKSVSSGSP-----WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLS 84
R S+R T S + P WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLS
Sbjct: 10 RSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLS 69
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDY 144
ADPETF + RELE+IH RWAMLGALGC+ PELLA+NG+ FGEAVWFKAGAQIF+EGGL+Y
Sbjct: 70 ADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNY 129
Query: 145 LGNPSLIHA 153
LGN +LIHA
Sbjct: 130 LGNENLIHA 138
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 116/164 (70%), Gaps = 20/164 (12%)
Query: 1 MATSTMALSSSFV---------GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYG 50
MA++ MA +S V G+A N +P + + GRI+M S WYG
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAANASPLRDVAAAANGRITM---------SNDLWYG 51
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DR+KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALG
Sbjct: 52 PDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 111
Query: 111 CVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
C+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 112 CITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 115/158 (72%), Gaps = 21/158 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA MLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA-------------MLGALGCVFPE 104
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 105 LLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 142
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELL++NGV+FGEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA 143
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 103/122 (84%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
SMR+T KS + S WYG DR ++LGPFSG+ PSYLTGEFPGDYGWDTAGLSADPETF +
Sbjct: 22 SMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFRR 81
Query: 93 NRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
RE E+IH RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLDYLGN +L+
Sbjct: 82 YREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLV 141
Query: 152 HA 153
HA
Sbjct: 142 HA 143
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELL++NGV+FGEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA 143
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELL++NGV+FGEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA 143
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 116/164 (70%), Gaps = 20/164 (12%)
Query: 1 MATSTMALSSSFV---------GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYG 50
MA++ MA +S V G+A N +P + + GRI+M S WYG
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAANASPLRDVAAAANGRITM---------SNDLWYG 51
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DR+KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALG
Sbjct: 52 PDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 111
Query: 111 CVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
C+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 112 CITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/141 (70%), Positives = 106/141 (75%), Gaps = 2/141 (1%)
Query: 13 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEF 72
+ K L P + L +M K A+KS S S RVKYLGPFSGE PSYLTGEF
Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCD--RRVKYLGPFSGEWPSYLTGEF 77
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
PGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKA
Sbjct: 78 PGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKA 137
Query: 133 GAQIFSEGGLDYLGNPSLIHA 153
GAQIFSEGGLDYLGNPSL+HA
Sbjct: 138 GAQIFSEGGLDYLGNPSLVHA 158
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELLA+NG KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 143
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%)
Query: 43 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
SSG+ WYG +R K+LGPFS P YLTGEF GDYGWDTAGLSADPETF + RELE+IH R
Sbjct: 35 SSGTSWYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 94
Query: 103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
WAMLGALGC+ PELLA+NGV FGEAVWFKAGAQIF EGGL+YLGN SLIHA
Sbjct: 95 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA 145
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 115/164 (70%), Gaps = 20/164 (12%)
Query: 1 MATSTMALSSSFV---------GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYG 50
MA++ MA +S V G+ N +P + + GRI+M S WYG
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRTANASPLRDVAAAANGRITM---------SNDLWYG 51
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALG
Sbjct: 52 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 111
Query: 111 CVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
C+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 112 CITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGG--RISMRKTASKSVSSGSP-WYGLDRVKYL 57
MA++ MA +S V G +N R A ++ G+ WYG DRVKYL
Sbjct: 1 MASTIMAATSRIVAAKTPFLGQGRAAANASPLRDVAAAAAGGRITMGNDLWYGPDRVKYL 60
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 120
Query: 118 AR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+ V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 112/154 (72%), Gaps = 10/154 (6%)
Query: 2 ATSTMALSSSFVGK-AVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
++ST+ + F+GK N P + +S G K + S WYG DRVKYLGPF
Sbjct: 6 SSSTIVRPTPFLGKRGSNANPLRDVVSMGN--------GKYIMSNELWYGPDRVKYLGPF 57
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 119
S + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 58 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 117
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 118 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 151
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 107/137 (78%), Gaps = 8/137 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SSS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQSSSLAGQTL-LRPHQNELVKKVGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKA 132
LLA+ GVKFGEAVWFKA
Sbjct: 118 LLAKTGVKFGEAVWFKA 134
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 112/154 (72%), Gaps = 10/154 (6%)
Query: 2 ATSTMALSSSFVGK-AVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
++ST+A + F+GK N P + +S G K + WYG DRVKYLGPF
Sbjct: 6 SSSTIARPTPFLGKKGSNANPLRDVVSMGN--------GKYIMGNELWYGPDRVKYLGPF 57
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 119
S + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 58 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 117
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 118 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 151
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 105/129 (81%), Gaps = 6/129 (4%)
Query: 31 RISMRKTASKSVSSGSP-----WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLS 84
R S+R T S + P WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLS
Sbjct: 7 RSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLS 66
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDY 144
ADPETF + RELE+IH RWAMLGALGC+ PELLA+NG+ FGEAVWFKAG+QIF+EGGL+Y
Sbjct: 67 ADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNY 126
Query: 145 LGNPSLIHA 153
LGN +L+HA
Sbjct: 127 LGNENLVHA 135
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/110 (79%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 45 GSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 103
G WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RW
Sbjct: 34 GIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 104 AMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AMLGALGCV PELL++NGV+FGEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 94 AMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA 143
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 110/154 (71%), Gaps = 8/154 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MAT++ SS G+ + L P NEL ++ RI+MR+T + S WYG DR K
Sbjct: 1 MATASAIQISSLAGQTL-LRPQQNELVSKMGASQARITMRRTVRSAPES--IWYGPDRPK 57
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
LLA+ GVKFGEAVWFKAG + G P+
Sbjct: 118 LLAKTGVKFGEAVWFKAGRRYSRREASTTWGTPT 151
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 97/107 (90%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGC+ PELLA+NG+ FGEAVWFKAGAQIF+EGGL+YLGN +LIHA
Sbjct: 92 GALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHA 138
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 143
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA + MA +SS KA G +N R + K WYG DRVKYLGP
Sbjct: 1 MAATLMAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGP 60
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
FS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEK 120
Query: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 143
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 99/112 (88%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC+ PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 91 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 142
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 111/153 (72%), Gaps = 9/153 (5%)
Query: 2 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS 61
+++T+ + F+G+ + P + ++ G SK WYG DRVKYLGPFS
Sbjct: 9 SSATVVKQTPFLGQRKSANPLRDVVAMG--------TSKFTMGNDLWYGPDRVKYLGPFS 60
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-N 120
+ PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 103/128 (80%), Gaps = 4/128 (3%)
Query: 27 SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
SN R+ MR + S SSGS WYG DR +LGPFSG PSYL GEFPGDYGWDTAGLSAD
Sbjct: 30 SNQARVVMRGSKS---SSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDTAGLSAD 86
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
PE+FA+NR LE+IH RWAMLGALGC+ PELL + + V E VWFKAGAQIFS+GGLDYL
Sbjct: 87 PESFARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYL 146
Query: 146 GNPSLIHA 153
GNP+LIHA
Sbjct: 147 GNPNLIHA 154
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 33 SMRKT-ASKSVSSGS-PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
++R T A++ V+ S +YG DRVK+LGPFSG PSYL GE+PGDYGWDTAGLSADPETF
Sbjct: 11 AVRPTRATRQVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSADPETF 70
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
++ RELEVIH RWAMLGALGCV PELL +NG FGEAVWFKAGAQIF +GGLDYLGN +
Sbjct: 71 SRYRELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNAN 130
Query: 150 LIHA 153
L+HA
Sbjct: 131 LVHA 134
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/164 (60%), Positives = 114/164 (69%), Gaps = 20/164 (12%)
Query: 1 MATSTMALSSSFV---------GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYG 50
MA++ MA +S V G+ N +P + + GRI+M S WYG
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRTANASPLRDVAAAANGRITM---------SNDLWYG 51
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DRVKYLGPFS + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALG
Sbjct: 52 PDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 111
Query: 111 CVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
C+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 112 CITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 110/160 (68%), Gaps = 7/160 (4%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSG------SPWYGLDRV 54
MA++ MA +S V G + S + + + + G WYG DRV
Sbjct: 1 MASTIMAATSRIVAAKTPFLGQGRAAAAAANASPLRDVAAAAAGGRITMGNDLWYGPDRV 60
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct: 61 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 120
Query: 115 ELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 EVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 160
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/120 (80%), Positives = 102/120 (85%), Gaps = 7/120 (5%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGLDRVKY 56
MA STMALSS +F GKAV L+P E+ G I+MRKTA K+ VSSGSPWYG DRVKY
Sbjct: 3 MAASTMALSSPAFAGKAVKLSP---EVLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVKY 59
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 114/156 (73%), Gaps = 13/156 (8%)
Query: 2 ATSTMALSSSFVG--KAVNLAPSGNELSNG-GRISMRKTASKSVSSGSPWYGLDRVKYLG 58
++ST+ ++ F+G KA N P + +S G G+ +M WYG DRVKYLG
Sbjct: 6 SSSTVVRATPFLGLTKATNANPLRDVVSMGPGKFTMGSDL---------WYGPDRVKYLG 56
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L
Sbjct: 57 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 116
Query: 119 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+ V F E VWFKAG+QIF+EGGLDYLGNP+L+HA
Sbjct: 117 KWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHA 152
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/110 (79%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 45 GSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 103
G +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RW
Sbjct: 34 GVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 104 AMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AMLGALGC+ PELLA+NG KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 94 AMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 143
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGC PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 91 RWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 142
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 97/107 (90%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGC+ PELLA+NG+ FGEAVWFKAG+QIF+EGGL+YLGN +L+HA
Sbjct: 72 GALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHA 118
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 101/122 (82%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
+ + A+ + S+G WYG DR K+LGPFS P+YLTGEFPGDYGWDTAGLSADPETF K
Sbjct: 24 TKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKK 83
Query: 93 NRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
RELEVIH RWA+LGALG + PELL+ GVKFGE VWFKAGAQIFSEGGLDYLG+P+LI
Sbjct: 84 YRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALI 143
Query: 152 HA 153
HA
Sbjct: 144 HA 145
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 104/134 (77%), Gaps = 12/134 (8%)
Query: 32 ISMRKTAS---KSVSSGSP--------WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 80
+ RK+A+ V+ G+P WYG DRVKYLGPFS + PSYLTGEFPGDYGWDT
Sbjct: 20 LGQRKSANPLRDVVAMGTPKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 79
Query: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSE 139
AGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSE
Sbjct: 80 AGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSE 139
Query: 140 GGLDYLGNPSLIHA 153
GGLDYLGNP+L+HA
Sbjct: 140 GGLDYLGNPNLVHA 153
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEF GDYGWDTAGLSADP+TFAK RE+EVIH RWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGC+ PELLA+NGV FGEAVWFKAGAQIF +GGL+YLGN +L+HA
Sbjct: 89 GALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHA 135
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
R ++ S WYG DRVK+LGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR
Sbjct: 32 RSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNR 91
Query: 95 ELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LE+IH RWAMLGALGCVFPE+L++ GV+F E VWFKAG+QIFS+GGLDYLGNP+L+HA
Sbjct: 92 ALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHA 151
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 106/142 (74%), Gaps = 11/142 (7%)
Query: 14 GKAVNLAPSGNELSNG-GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEF 72
GKA N P + +S G G+ SM S WYG DRVKYLGPFS + PSYL GEF
Sbjct: 25 GKASNGNPLRDVVSMGSGKYSM---------SNELWYGPDRVKYLGPFSAQTPSYLKGEF 75
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFK 131
PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFK
Sbjct: 76 PGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 135
Query: 132 AGAQIFSEGGLDYLGNPSLIHA 153
AGAQIFSEGGLDYLGNP+L+HA
Sbjct: 136 AGAQIFSEGGLDYLGNPNLVHA 157
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
R ++ S WYG DRVK+LGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR
Sbjct: 32 RSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNR 91
Query: 95 ELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LE+IH RWAMLGALGCVFPE+L++ GV+F E VWFKAG+QIFS+GGLDYLGNP+L+HA
Sbjct: 92 ALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHA 151
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 43 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 102
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E VWFKAGAQIFS+GGLDYLGNP+L+HA
Sbjct: 103 ALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHA 149
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYL 68
SS+F+G AV +AP+ + + +KS + SP+YG DRV +LGPF+ + PSYL
Sbjct: 7 SSTFLGAAV-VAPAQKAEAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPFT-DVPSYL 64
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEA 127
TGE+PGDYGWDT GLSADPETFA RE+E++H RWAMLG LGC PE L + +G+ FGE+
Sbjct: 65 TGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGINFGES 124
Query: 128 VWFKAGAQIFSEGGLDYLGNPSLIHA 153
VWFKAG QIF EGGLDYLGNPSL+HA
Sbjct: 125 VWFKAGGQIFQEGGLDYLGNPSLVHA 150
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Query: 27 SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
SN R + K WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 31 SNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 90
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
PE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYL
Sbjct: 91 PEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYL 150
Query: 146 GNPSLIHA 153
GNP+L+HA
Sbjct: 151 GNPNLVHA 158
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 51 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 110
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A GC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 111 AFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 40 KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
K S WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 38 KFTMSNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVI 97
Query: 100 HCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 98 HGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
ST SSS + L + N R ++ + K WYG DRVKYLGPFS +
Sbjct: 3 STFMSSSSVLTPTPFLGQTKGSTFNPLRDAVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGV 122
PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 95/111 (85%)
Query: 43 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
S G+ +YG +R K+LGPFS P YLTGEF GDYGWDTAGLSADPETF + RELE+IH R
Sbjct: 34 SKGTEFYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 93
Query: 103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
WAMLGALGC+ PELLA+NGV FGEAVWFKAGAQIF EGGL+YLGN SLIHA
Sbjct: 94 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA 144
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/107 (81%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLG
Sbjct: 6 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 65
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 66 ALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 112
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYL 68
SS+F+G AV +AP+ + + +KS + SP+YG DRV +LGPF+ + PSYL
Sbjct: 7 SSTFLGAAV-VAPAQKVEAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPFT-DVPSYL 64
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEA 127
TGE+PGDYGWDT GLSADPETFA RE+E++H RWAMLG LGC PE L + +G+ FGE+
Sbjct: 65 TGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGINFGES 124
Query: 128 VWFKAGAQIFSEGGLDYLGNPSLIHA 153
VWFKAG QIF EGGLDYLGNPSL+HA
Sbjct: 125 VWFKAGGQIFQEGGLDYLGNPSLVHA 150
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 2/126 (1%)
Query: 30 GRISMRKTASKSVSSGS-PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
G++ K V+ + +YG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 15 GQVGASARGQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPE 74
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
TFA RELE+IH RWAMLGALGCV PELL++ GV+FGEAVWFKAGAQIF++GGLDYLGN
Sbjct: 75 TFASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGN 134
Query: 148 PSLIHA 153
SL+HA
Sbjct: 135 SSLVHA 140
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 107/151 (70%), Gaps = 9/151 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKT---ASKSVSSGSPWYGLDRVKYL 57
MA +TMALSS + + G ++ GRI+MRKT A + +SGSPWYG DRV YL
Sbjct: 1 MAAATMALSSPALAGKI-----GRDVFGEGRITMRKTGGRARPTAASGSPWYGPDRVLYL 55
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG G + PE
Sbjct: 56 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEAC 115
Query: 118 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
+ G G EAVWFK GA + L+Y GN
Sbjct: 116 NKFGANCGPEAVWFKTGALLLDGNTLNYFGN 146
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 46 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 105
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A GC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 106 AFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 152
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
M + A SS+ + L + SN R + K WYG DRVKYLGPF
Sbjct: 1 MLMAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPF 60
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 119
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V F E +WFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHA 154
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 107
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 108 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/130 (70%), Positives = 104/130 (80%), Gaps = 7/130 (5%)
Query: 31 RISMRKTASKSVSSGSP-----WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLS 84
R S+R T + + P WYG DR K+LGPFS G+ PSYLTGEFPGDYGWDTAGLS
Sbjct: 10 RSSVRPTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGDYGWDTAGLS 69
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLD 143
ADPETF + RELE+IH RWAMLGALGCV PELL++ GV FGEAVWFKAGAQIF+EGGL+
Sbjct: 70 ADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLN 129
Query: 144 YLGNPSLIHA 153
YLGN +L+HA
Sbjct: 130 YLGNENLVHA 139
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLG
Sbjct: 46 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 105
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 106 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 152
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 51 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 110
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A GC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 111 AFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 102/141 (72%), Gaps = 9/141 (6%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GK N P + +S G K S WYG DRVKYLGPFS + PSYL GEFP
Sbjct: 25 GKGANANPLRDAVSMG--------TGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLKGEFP 76
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKA 132
GDYGWDTAGLSADPE FAKNR LEVIH RWA+LGALGC+ PE+L + V F E VWFKA
Sbjct: 77 GDYGWDTAGLSADPEAFAKNRALEVIHGRWALLGALGCITPEVLGKWLRVDFKEPVWFKA 136
Query: 133 GAQIFSEGGLDYLGNPSLIHA 153
GAQIFSEGGLDYLGNP+L+HA
Sbjct: 137 GAQIFSEGGLDYLGNPNLVHA 157
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 51 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 110
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A GC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 111 AFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
ST SSS + L + N R + + K WYG DRVKYLGPFS +
Sbjct: 3 STFTSSSSVLSPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGV 122
PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L + V
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 40 KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
K + WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 42 KYIMGNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVI 101
Query: 100 HCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 102 HGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 156
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 97/128 (75%), Gaps = 1/128 (0%)
Query: 27 SNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
+N R + K WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSAD
Sbjct: 29 ANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSAD 88
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
PE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYL
Sbjct: 89 PEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
Query: 146 GNPSLIHA 153
GNP+L+HA
Sbjct: 149 GNPNLVHA 156
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG +YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 23 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHA 82
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALG V PELLA+NGV FGEAVWFKAGAQIF EGGL+YLGNPSLIHA
Sbjct: 83 RWAMLGALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA 134
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 97/121 (80%), Gaps = 9/121 (7%)
Query: 42 VSSGSP--------WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
VS GSP WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKN
Sbjct: 33 VSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKN 92
Query: 94 RELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
R LEVIH RWAMLGA GC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+H
Sbjct: 93 RALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 152
Query: 153 A 153
A
Sbjct: 153 A 153
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGCV P+LL++NGV+F EA+WFKAGAQIF EGGLDYLGN SL+HA
Sbjct: 92 RWAMLGALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHA 143
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 98/121 (80%), Gaps = 9/121 (7%)
Query: 42 VSSGSP--------WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
VS GSP WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKN
Sbjct: 33 VSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKN 92
Query: 94 RELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
R LEVIH RWAMLGA GC+ PE+L + V+F E VWFKAG+QIFSEGGLDYLGNP+L+H
Sbjct: 93 RALEVIHGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 152
Query: 153 A 153
A
Sbjct: 153 A 153
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 98/125 (78%), Gaps = 10/125 (8%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GRI+M K WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE
Sbjct: 39 GRITMSKEL---------WYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEA 89
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFS+GGLDYLGNP
Sbjct: 90 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 149 SLIHA 153
+L+HA
Sbjct: 150 NLVHA 154
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 98/125 (78%), Gaps = 10/125 (8%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
GRI+M K WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE
Sbjct: 39 GRITMSKEL---------WYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEA 89
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFS+GGLDYLGNP
Sbjct: 90 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 149 SLIHA 153
+L+HA
Sbjct: 150 NLVHA 154
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 100/123 (81%), Gaps = 2/123 (1%)
Query: 32 ISMRKTASKSVSSGS-PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
+ + +K V+ + +YG DR +LGPF+ E PSYL GEFPGDYGWDTAGLSADPETF
Sbjct: 14 VPTKGQGNKQVTRAAIEFYGPDRAGFLGPFT-ESPSYLKGEFPGDYGWDTAGLSADPETF 72
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
A+ RE+EVIH RWAMLGALGCV PELLA+NGV FGEAVWFKAGAQIF GL+YLGNPSL
Sbjct: 73 ARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNPSL 132
Query: 151 IHA 153
+HA
Sbjct: 133 VHA 135
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 13 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 72
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E +WFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 73 ALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHA 119
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 43 SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
SSG WYG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 102 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGCV P+LL++NGV+F EA+WFKAGAQIF EGGLDYLGN SL+HA
Sbjct: 92 RWAMLGALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHA 143
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 109/143 (76%), Gaps = 8/143 (5%)
Query: 19 LAPSGNELSNGGRISMRKTASKSVSSGSP------WYGLDRVKYLGPFS-GEPPSYLTGE 71
PS + + G + + +KS S +P WYG DR K+LGPFS G+ P+YLTGE
Sbjct: 17 FTPSDFRVYSLGSATHHQHPTKSSGSTAPQLSSWPWYGPDRPKFLGPFSEGDTPAYLTGE 76
Query: 72 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWF 130
FPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGCV PELL++ GV FGEAVWF
Sbjct: 77 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWF 136
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAGAQIF+EGGL+YLGN +L+HA
Sbjct: 137 KAGAQIFAEGGLNYLGNENLVHA 159
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 40 KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
K S WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVI
Sbjct: 38 KYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVI 97
Query: 100 HCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGC+ PE+L + V F E VWFKAG+QIF+EGGLDYLGNP+L+HA
Sbjct: 98 HGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHA 152
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
+YG +R YLGPF+ + PSYL GE+PGDYGWDTAGLSADPETFA+ RE+EVIH RWAMLG
Sbjct: 36 FYGPNRAGYLGPFT-KSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 94
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGCV PELLA+NGV FGEAVW+KAG+QIF+ GGLDYLGNPSLIHA
Sbjct: 95 ALGCVTPELLAKNGVSFGEAVWWKAGSQIFAPGGLDYLGNPSLIHA 140
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELL++ GV FGEAVWFKAGAQIF+EGGL+YLGN +L+HA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHA 140
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELL++ GV FGEAVWFKAGAQIF+EGGL+YLGN +L+HA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHA 140
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELL++ GV FGEAVWFKAGAQIF+EGGL+YLGN +L+HA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHA 140
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 34 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 93
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELL++ GV FGEAVWFKAGAQIF+EGGL+YLGN +L+HA
Sbjct: 94 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHA 141
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 100/117 (85%), Gaps = 2/117 (1%)
Query: 39 SKSVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
+K S S WYG DR K+LGPFS G P+YLTGEFPGDYGWDT+GLSADPETF + R +E
Sbjct: 27 AKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVE 86
Query: 98 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC+FPE+L + +GV+FGEAVWFKAGAQIF++GGL+YLGNP L+HA
Sbjct: 87 VIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHA 143
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
+YG +R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALG V PELL +NGV+FGEAVWFKAGAQIF EGGL+YLGNPSLIHA
Sbjct: 97 GALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA 143
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 100/123 (81%), Gaps = 6/123 (4%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
++R A +V WYG DR K+LGPFS G+ PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 16 NVRNIARNAVE----WYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 71
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
RE E+IH RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLDYLGNPSL
Sbjct: 72 AYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSL 131
Query: 151 IHA 153
+HA
Sbjct: 132 VHA 134
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 111/155 (71%), Gaps = 16/155 (10%)
Query: 6 MALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSP------WYGLDRVKYLGP 59
MA + SF KA+ ++ R R+ K+ +S P +YG +R K+LGP
Sbjct: 1 MAFALSFSRKALQVS---------ARPPARRGTGKTAASRPPPAPGIEFYGPNRAKWLGP 51
Query: 60 FS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
+S P+Y +FPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC+ PELLA
Sbjct: 52 YSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLA 111
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
++G +FGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 112 KSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 146
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
+YG DR +LGPF+ + PSYL GEFPGDYGWDTAGLSADPETFA+ RE+EVIH RWAMLG
Sbjct: 36 FYGPDRATFLGPFT-DTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 94
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGCV PELLA+NGV FGEAVWFKAGAQIF GL+YLGN SL+HA
Sbjct: 95 ALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNSSLVHA 140
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 2/115 (1%)
Query: 41 SVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
SV + WYG DR K+LGP+S G PSYLTGEFPGDYGWDTAGLSADPETF K RE E+I
Sbjct: 26 SVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELI 85
Query: 100 HCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGCV PE+LA+ G FGE+VWF+AGAQIF +GGLDYLG+P+LIHA
Sbjct: 86 HARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHA 140
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 2/115 (1%)
Query: 41 SVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
SV + WYG DR K+LGP+S G PSYLTGEFPGDYGWDTAGLSADPETF K RE E+I
Sbjct: 23 SVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELI 82
Query: 100 HCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
H RWAMLGALGCV PE+LA+ G FGE+VWF+AGAQIF +GGLDYLG+P+LIHA
Sbjct: 83 HARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHA 137
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/114 (74%), Positives = 96/114 (84%), Gaps = 2/114 (1%)
Query: 42 VSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
V + WYG DR K+LGPFS G+ PSYLTG+FPGDYGWDTAGLSADPETF RE E+IH
Sbjct: 21 VRNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 101 CRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLDYLGNPSL+HA
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA 134
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + PSYLTGEFPG+YGWDTAGLSADPE FAKNR LEVIH RWAMLG
Sbjct: 3 WYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 62
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A GC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 63 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 109
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Query: 32 ISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
+ R+T +K SP+YG +R +LG SGEPP+YL GEFPGDYGWDTAGLSADPETF
Sbjct: 24 VQARRTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFK 83
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKF-GEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ R+LE+IH RWA+LGALGCV PELLARNGV + VWFK GA+IF EGGL+YLGN +L
Sbjct: 84 RYRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENL 143
Query: 151 IHA 153
+HA
Sbjct: 144 VHA 146
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A+ + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 376 SGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 435
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 436 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 495
Query: 152 HA 153
HA
Sbjct: 496 HA 497
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 43 SSGSPWYGLDRVKYLGPFSG-EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
++GS WYG +R K+LGP SG P YL GE+ GDYG+DTAGL+ADP+ F + R+ E+ +
Sbjct: 150 ATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNG 209
Query: 102 RWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLG LGC+ PE+L+ GV + E VWFK GA I + G +DYL NP LIHA
Sbjct: 210 RWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 262
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
Query: 120 NGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
NGV FGE AVW+KAGAQIFS GL+YLGNPSLIHA
Sbjct: 2 NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA 36
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/106 (76%), Positives = 94/106 (88%), Gaps = 1/106 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
+YG DR K+LGPF+ E YLTGEFPGDYGWDTAGLSADP+TF++ RE+EVIH RWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPES-DYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PELLA+NGV FGEAVWFKAGAQIF +GGL+YLGN +L+HA
Sbjct: 88 ALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHA 133
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A KS + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 83 SGRKSAPKS-DNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 141
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 142 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 201
Query: 152 HA 153
HA
Sbjct: 202 HA 203
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 94/122 (77%), Gaps = 7/122 (5%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A KS + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 318 SGRKSAPKS-DNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 376
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAML V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 377 YREAEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 431
Query: 152 HA 153
HA
Sbjct: 432 HA 433
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 96/118 (81%), Gaps = 3/118 (2%)
Query: 36 KTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
+ ++ ++ +YG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+ RE
Sbjct: 20 ERSTSVIARAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYRE 79
Query: 96 LEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+EVIH RWAMLGALGC+ PEL+ G E VWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 80 IEVIHARWAMLGALGCITPELI---GGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHA 134
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Query: 26 LSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLS 84
+ N ++ K+ + WYG DR K+LGPFS G+ PSYLTGEFPGDYGWDTAGLS
Sbjct: 6 VVNSAVLAQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLS 65
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLD 143
ADPETF RE E+IH RWAMLGALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLD
Sbjct: 66 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLD 125
Query: 144 YLGNPSLIHA 153
YLGN +LIHA
Sbjct: 126 YLGNSNLIHA 135
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S +K+ + + + S WYG DR K+LGP +G+ P+YLTGE PGDYGWDTAGL ADP T A+
Sbjct: 137 SGKKSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLAR 196
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 197 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 256
Query: 152 HA 153
HA
Sbjct: 257 HA 258
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
+K+ + + + S WYG DR K+LGP +G+ P+YLTGE PGDYGWDTAGL ADP T A+ R
Sbjct: 139 KKSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYR 198
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLIHA
Sbjct: 199 EAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA 258
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 90/108 (83%)
Query: 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
S +YG +R +LGP SG PSYLTGEFPGDYGWD+AGLS+DPETF + RELE+IH RWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 106 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGALGCV PELLA+NG E VWFKAGAQIF EGGLDYLGNP L+HA
Sbjct: 111 LGALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHA 158
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 106/130 (81%), Gaps = 6/130 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ PS + R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNV-PSSSAFGEA-RVTMRKTAAKAKPAAASGSPWYGPDRVLY 58
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 117 LARNGVKFGE 126
LA + F E
Sbjct: 119 LADDPEAFAE 128
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A+ + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 580 SGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 639
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 640 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 699
Query: 152 HA 153
HA
Sbjct: 700 HA 701
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 102/147 (69%), Gaps = 4/147 (2%)
Query: 8 LSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSY 67
L+ F L L+ GR + S ++S WYG DR K+LGP +GE PSY
Sbjct: 97 LTDPFENNLFQLTSGFAMLATSGRKAKAAPKSDNLSQ---WYGPDRAKWLGPLTGEVPSY 153
Query: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE- 126
LTGE PGDYGWDTAGL +DP T A+ RE EVIH RWAMLGALG V PELLA NGV FGE
Sbjct: 154 LTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEG 213
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AVW+KAGAQIFS GL+YLGNPSLIHA
Sbjct: 214 AVWYKAGAQIFSADGLNYLGNPSLIHA 240
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
YG DRVK+LG F+G P YLTGE PGDYGWDTAGL ADP A+ R +VIH RWAMLG
Sbjct: 838 YGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGV 897
Query: 109 LGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGC FPE + R GV FGE VWFKAGAQIFSE GL+YLG P LIHA
Sbjct: 898 LGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHA 943
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 43 SSGSPWYGLDRVKYLGPFSG-EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
++GS WYG +R K+LGP SG P YL GE+ GDYG+DTAGL+ADP+ F + R+ E+ +
Sbjct: 354 ATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNG 413
Query: 102 RWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
RWAMLG LGC+ PE+L+ GV + E VWFK GA I + G +DYL NP LIHA
Sbjct: 414 RWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHA 466
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Query: 31 RISMRKTASKSVSS-GSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
++ R+T + S+ S WYG DR KYLG SGE P+YLTGEF GDYGWDTAGLSADPET
Sbjct: 24 KVEARRTVKGASSAPDSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPET 83
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
F + RELE+IH RWAMLGALGC+ PELLA NG E VWFKAGAQIF +GGL+YLGN +
Sbjct: 84 FKRYRELELIHARWAMLGALGCITPELLANNGTPIAEPVWFKAGAQIFQDGGLNYLGNEN 143
Query: 150 LIHA 153
L+HA
Sbjct: 144 LVHA 147
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A KS + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 31 SGRKSAPKS-DNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 89
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLI 151
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGAQIFS GL+YLGNPSLI
Sbjct: 90 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 149
Query: 152 HA 153
HA
Sbjct: 150 HA 151
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 81/103 (78%), Gaps = 2/103 (1%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
S RK+A KS + S WYG DR K+LGP +GE PSYLTGE PGDYGWDTAGL +DP T A+
Sbjct: 266 SGRKSAPKS-DNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 324
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGE-AVWFKAGA 134
RE EVIH RWAMLGALG V PELLA NGV FGE AVW+KAGA
Sbjct: 325 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 9/137 (6%)
Query: 26 LSNGGRISMRKTASKSVSSGSP-------WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYG 77
LSN +S R+T S S G WYG DR K+LGP+S G PSYL GE+PGDYG
Sbjct: 6 LSNSFVVSARRTVSSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYPGDYG 65
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQI 136
WDTAGLSADPETF++ RE+EVIH RWA+LG LG V PELL + GVKF EAVWFKAGAQI
Sbjct: 66 WDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQI 125
Query: 137 FSEGGLDYLGNPSLIHA 153
FS GL+YLGNPSL+HA
Sbjct: 126 FSADGLNYLGNPSLVHA 142
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 91/108 (84%)
Query: 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
S +YG DR +LGP SG P+YLTGEFPGDYGWD+AGLSADPETF + RELE+IH RWAM
Sbjct: 50 SAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAM 109
Query: 106 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGALGC+ PELLA+NG E VWFKAGAQIF+EGGLDYLGNP L+HA
Sbjct: 110 LGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHA 157
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/132 (65%), Positives = 106/132 (80%), Gaps = 8/132 (6%)
Query: 30 GRISMRKTASKSVS------SGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAG 82
G ++++++A +V+ + WYG +R K+LGP+S G PSYLTGEFPGDYGWDTAG
Sbjct: 7 GNVTIQRSAVVNVARNVGAKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 66
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGG 141
LSADPETF K RE E+IH R+AMLGALGCV PELLA+ GV FGE+VWF+AGAQIF EGG
Sbjct: 67 LSADPETFKKYRETELIHARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGG 126
Query: 142 LDYLGNPSLIHA 153
LDYLG+P+LIHA
Sbjct: 127 LDYLGSPALIHA 138
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 100/127 (78%), Gaps = 4/127 (3%)
Query: 31 RISMRKTA--SKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
+++ R+T SK + S WYG DR +LG SGEPPSYLTGEFPGDYGWDTAG SADP
Sbjct: 23 QVNARRTVKPSKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPT 82
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG--EAVWFKAGAQIFSEGGLDYLG 146
TFA+ R +EVIH RWA+LGALG V PE+LA+NGV F A+WFKAG++IF EGGL+YLG
Sbjct: 83 TFARYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLG 142
Query: 147 NPSLIHA 153
NP+LIHA
Sbjct: 143 NPNLIHA 149
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 90/108 (83%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR +LGPFS G PSYLTGEFPGDYGWDT GLSADP TFA RE EVIH RWAML
Sbjct: 128 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELLA+ +GV E VWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA 235
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 98/123 (79%), Gaps = 6/123 (4%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPF-SGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
++R A +V WYG DR K+LGPF G+ PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 16 NVRNIARNAVE----WYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 71
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
RE E+IH RWAMLGALGCV PE+L++ GV GE+VWFKAG+QIF EGGLDYLGNPSL
Sbjct: 72 AYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSL 131
Query: 151 IHA 153
+HA
Sbjct: 132 VHA 134
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 90/108 (83%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR +LGPFS G PSYLTGEFPGDYGWDT GLSADP TFA RE EVIH RWAML
Sbjct: 115 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELLA+ +GV E VWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA 222
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 99/123 (80%), Gaps = 6/123 (4%)
Query: 33 SMRKTASKSVSSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
S+R + ++ WYG DR K+LGPFS G+ PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 1 SVRNVSRNAIE----WYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 56
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
RE E+IH RWAMLGALGCV PE+LA+ GV GE+VWFKAG+QIF EGGLDYLGNPSL
Sbjct: 57 AYREQELIHARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSL 116
Query: 151 IHA 153
+HA
Sbjct: 117 VHA 119
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 98/127 (77%), Gaps = 5/127 (3%)
Query: 32 ISMRKTASKSVSSGS----PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
++M TA + + S WYG +R K+LGPFS G PSYLTGEFPGDYGWDTAGL+AD
Sbjct: 119 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 178
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
P TFAK RE E+IH RWAMLGALG VFPE LA+ GV E VWFKAGAQIFSEGGLDYLG
Sbjct: 179 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 238
Query: 147 NPSLIHA 153
N +L+HA
Sbjct: 239 NSNLVHA 245
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 98/127 (77%), Gaps = 5/127 (3%)
Query: 32 ISMRKTASKSVSSGS----PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
++M TA + + S WYG +R K+LGPFS G PSYLTGEFPGDYGWDTAGL+AD
Sbjct: 359 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 418
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
P TFAK RE E+IH RWAMLGALG VFPE LA+ GV E VWFKAGAQIFSEGGLDYLG
Sbjct: 419 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 478
Query: 147 NPSLIHA 153
N +L+HA
Sbjct: 479 NSNLVHA 485
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR +LGPFS G PSYLTGEFPGDYGWDT GLSADP TFA RE EVIH RWAML
Sbjct: 128 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
G LGCV PELLA+ +GV E VWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA 235
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 107/150 (71%), Gaps = 12/150 (8%)
Query: 15 KAVNLAPSG---NELSNGGRISMRKTASKSV------SSGSPWYGLDRVKYLGPFS-GEP 64
KA L +G N+L G +SM + A+ ++ WYG DR +LGPFS G
Sbjct: 71 KAAMLVKTGAITNKLMKSG-LSMNQIATAVTCQKIGGAACQEWYGPDRALWLGPFSEGAV 129
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVK 123
PSYLTGEFPGDYGWDT GLSADP TFA RE EVIH RWAMLGALGCV PELL++ +GV
Sbjct: 130 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVP 189
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
E VWFKAG+QIF+EGGLDYLGNPSLIHA
Sbjct: 190 IAEPVWFKAGSQIFAEGGLDYLGNPSLIHA 219
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 98/127 (77%), Gaps = 5/127 (3%)
Query: 32 ISMRKTASKSVSSGS----PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
++M TA + + S WYG +R K+LGPFS G PSYLTGEFPGDYGWDTAGL+AD
Sbjct: 102 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 161
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
P TFAK RE E+IH RWAMLGALG VFPE LA+ GV E VWFKAGAQIFSEGGLDYLG
Sbjct: 162 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 221
Query: 147 NPSLIHA 153
N +L+HA
Sbjct: 222 NSNLVHA 228
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 97/127 (76%), Gaps = 5/127 (3%)
Query: 32 ISMRKTASKSVSSGS----PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
++M TA + + S WYG +R K+LGPFS PSYLTGEFPGDYGWDTAGL+AD
Sbjct: 342 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAAD 401
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
P TFAK RE E+IH RWAMLGALG VFPE LA+ GV E VWFKAGAQIFSEGGLDYLG
Sbjct: 402 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 461
Query: 147 NPSLIHA 153
N +L+HA
Sbjct: 462 NSNLVHA 468
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 97/127 (76%), Gaps = 5/127 (3%)
Query: 32 ISMRKTASKSVSSGS----PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
++M TA + + S WYG +R K+LGPFS PSYLTGEFPGDYGWDTAGL+AD
Sbjct: 582 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAAD 641
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
P TFAK RE E+IH RWAMLGALG VFPE LA+ GV E VWFKAGAQIFSEGGLDYLG
Sbjct: 642 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 701
Query: 147 NPSLIHA 153
N +L+HA
Sbjct: 702 NSNLVHA 708
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR +LGPFS G PSYLTGEFPGDYGWDT GLSADP TFA RE EVIH RWAML
Sbjct: 127 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
G LGCV PELLA+ +GV E VWFKAG+QIF+EGGLDYLGNPSL+HA
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA 234
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/83 (96%), Positives = 82/83 (98%)
Query: 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 130
FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWF
Sbjct: 2 RFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWF 61
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 62 KAGAQIFSEGGLDYLGNPNLIHA 84
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/106 (76%), Positives = 88/106 (83%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
+YG DR +LGP SG P+YLTGEFPGDYGWD+AGLSADPETF + RELE+IH RWAMLG
Sbjct: 46 FYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLG 105
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGCV PELLA+NG E VWFKAGAQIF EGGLDYLGN LIHA
Sbjct: 106 ALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNAGLIHA 151
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/83 (95%), Positives = 82/83 (98%)
Query: 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWF 130
EFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWF
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 60
Query: 131 KAGAQIFSEGGLDYLGNPSLIHA 153
KAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 61 KAGSQIFSEGGLDYLGNPSLVHA 83
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 90/124 (72%), Gaps = 20/124 (16%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
G+ KT +K VSSGSPWYG DRVKYLGPF GE PSYLTGEFPGDYGW+TAGLSADPET
Sbjct: 15 GKGHHEKTTTKKVSSGSPWYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPET 74
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAM WFKA +QIFSEGGLDYLGNPS
Sbjct: 75 FAKNRELEVIHSRWAMFDR--------------------WFKARSQIFSEGGLDYLGNPS 114
Query: 150 LIHA 153
L+HA
Sbjct: 115 LVHA 118
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 91/108 (84%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR +LGP+S G PSYL GEFPGDYGWDTAGLSADPETF RE E+IH RWAML
Sbjct: 8 WYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 67
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PE+L++ GV FGE+VWFKAG+QIF EGGLDYLGNPSL+HA
Sbjct: 68 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA 115
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 97/119 (81%), Gaps = 4/119 (3%)
Query: 39 SKSVSSGS-PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
S+ V+ S +YG DR K+LGPFS G PSYL GEFPGDYGWD+AGLSADPETFA+ RE+
Sbjct: 21 SRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREI 80
Query: 97 EVIHCRWAMLGALGCVFPELLARNG-VKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALGC+ PELL NG FGE AVWFKAGA IFS+ GL+YLGNPSLIHA
Sbjct: 81 EVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHA 139
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 104/128 (81%), Gaps = 6/128 (4%)
Query: 32 ISMRKTASKSVSS----GSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
+++R+T + +++ +YG DR K+LGPFS + P YLTGEFPGDYGWDTAGLSAD
Sbjct: 13 LNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSAD 72
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
P+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YL
Sbjct: 73 PQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYL 132
Query: 146 GNPSLIHA 153
GN SLIHA
Sbjct: 133 GNESLIHA 140
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 104/128 (81%), Gaps = 6/128 (4%)
Query: 32 ISMRKTASKSVSS----GSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
+++R+T + +++ +YG DR K+LGPFS + P YLTGEFPGDYGWDTAGLSAD
Sbjct: 13 LNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSAD 72
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
P+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YL
Sbjct: 73 PQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYL 132
Query: 146 GNPSLIHA 153
GN SLIHA
Sbjct: 133 GNESLIHA 140
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 91/108 (84%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+LGPFS G+ P YLTGEFPGDYGWDTAGLSADP TFA+ RE+E+IH RWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 107 GALGCVFPELLARNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELLA+NG + VWFKAGA IF++ GL+YLGNP+LIHA
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHA 135
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 103/128 (80%), Gaps = 6/128 (4%)
Query: 32 ISMRKTASKSVSS----GSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSAD 86
+++R+T + +++ +YG DR K+LGPFS + P YLTGEFPGDYGWDTAGLSAD
Sbjct: 13 LNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSAD 72
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYL 145
P+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF+ GGL+YL
Sbjct: 73 PQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYL 132
Query: 146 GNPSLIHA 153
GN SLIHA
Sbjct: 133 GNESLIHA 140
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 90/108 (83%), Gaps = 2/108 (1%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-TFAKNRELEVIHCRWAML 106
WYG DRVKYLGPFS + PSY TGEFPGDYGWDTAGLSADPE FAKN LEVI+ RWAML
Sbjct: 47 WYGPDRVKYLGPFSVQTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAML 106
Query: 107 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GA GC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 107 GAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 154
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/79 (97%), Positives = 79/79 (100%)
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA 134
DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 135 QIFSEGGLDYLGNPSLIHA 153
QIFSEGGLDYLGNPSL+HA
Sbjct: 61 QIFSEGGLDYLGNPSLVHA 79
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/79 (98%), Positives = 79/79 (100%)
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA 134
DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 135 QIFSEGGLDYLGNPSLIHA 153
QIFSEGGLDYLGNPSLIHA
Sbjct: 61 QIFSEGGLDYLGNPSLIHA 79
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/84 (92%), Positives = 82/84 (97%)
Query: 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 129
GEFPGDYGWDTAGLSADPETFAKNRE EVIH RWAMLGALGCVFPE+L++NGVKFGEAVW
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 60
Query: 130 FKAGAQIFSEGGLDYLGNPSLIHA 153
FKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 61 FKAGAQIFSEGGLDYLGNPNLIHA 84
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 79/79 (100%)
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA 134
DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC+FPELLARNGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFGEAVWFKAGS 60
Query: 135 QIFSEGGLDYLGNPSLIHA 153
QIFSEGGLDYLGNP+LIHA
Sbjct: 61 QIFSEGGLDYLGNPTLIHA 79
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/81 (95%), Positives = 80/81 (98%)
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKA
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 60
Query: 133 GAQIFSEGGLDYLGNPSLIHA 153
G+QIFSEGGLDYLGNPSL+HA
Sbjct: 61 GSQIFSEGGLDYLGNPSLVHA 81
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 104/156 (66%), Gaps = 10/156 (6%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYL 57
MA S+MALSS + GK V L PS EL R + RK+A+ K SSGSPWYG DRVKYL
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQEL-GASRFTTRKSATTKKVASSGSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR---WAMLGALGCVFP 114
GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN L W F
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPWDVSSQSFC 119
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ N VK FKAG+QIFSEGGLDYLGNPSL
Sbjct: 120 PVTVLNSVKL---CGFKAGSQIFSEGGLDYLGNPSL 152
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/82 (95%), Positives = 80/82 (97%), Gaps = 1/82 (1%)
Query: 73 PGDYGWDTA-GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 131
PGDYGWDT+ GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 60
Query: 132 AGAQIFSEGGLDYLGNPSLIHA 153
AGAQIFSEGGLDYLGNPSL+HA
Sbjct: 61 AGAQIFSEGGLDYLGNPSLVHA 82
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 83/95 (87%), Gaps = 2/95 (2%)
Query: 34 MRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKN
Sbjct: 1 MRRTVKST--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKN 58
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
RELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAV
Sbjct: 59 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAV 93
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 95/120 (79%), Gaps = 4/120 (3%)
Query: 38 ASKSVSSGS-PWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
A K V+ S +YG DR K+LGPFS G PSYL GEFPGDYGWDTAGLSADPETFA+ RE
Sbjct: 25 ARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARYRE 84
Query: 96 LEVIHCRWAMLGALGCVFPELLARNG-VKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+E+IH RWA+LGALG + PE L R+G V FGE AVWFKAGA IF + GL+YLGNP LIHA
Sbjct: 85 IELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHA 144
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/80 (91%), Positives = 79/80 (98%)
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 66
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
+QIFSEGGLDYLGNP+L+HA
Sbjct: 67 SQIFSEGGLDYLGNPNLVHA 86
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/80 (92%), Positives = 79/80 (98%)
Query: 74 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
GDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+LA+NGVKFGEAVWFKAG
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
AQIFSEGGLDYLGNP+L+HA
Sbjct: 61 AQIFSEGGLDYLGNPNLVHA 80
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 88/119 (73%), Gaps = 10/119 (8%)
Query: 10 SSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLT 69
+ F+ K NL S R +MR+T + S WYG DR KYLGPFS + PSYLT
Sbjct: 18 NEFIRKVGNLGQS--------RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLT 67
Query: 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
GEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEA
Sbjct: 68 GEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAT 126
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/124 (65%), Positives = 94/124 (75%), Gaps = 11/124 (8%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGLDRVK 55
MA S + ++SF+G A P +EL +GGRI+MR+T + S WYG DR K
Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPK 54
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE
Sbjct: 55 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 114
Query: 116 LLAR 119
+L+R
Sbjct: 115 ILSR 118
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/75 (97%), Positives = 75/75 (100%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARN
Sbjct: 1 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 60
Query: 121 GVKFGEAVWFKAGAQ 135
GVKFGEAVWFKAG+Q
Sbjct: 61 GVKFGEAVWFKAGSQ 75
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
PFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 119 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+ V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 96
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 79 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 138
DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 60
Query: 139 EGGLDYLGNPSLIHA 153
EGGLDYLGNPSLIHA
Sbjct: 61 EGGLDYLGNPSLIHA 75
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 82/106 (77%), Gaps = 3/106 (2%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG +R KYLGPF P+YLTGEFPGDYGWD+AGLSADP TF RE EVIH RWAMLG
Sbjct: 89 WYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLG 148
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+FPELL N F VWFKAG IF E G+DYLGNP+L+HA
Sbjct: 149 ALGCIFPELL--NSAGFNLPVWFKAGGTIF-ENGIDYLGNPNLVHA 191
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 80/96 (83%)
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP S PSYL GEFPGDYGWDTAGLSADPETFA+ RE+EVIH RWAMLGALGC+ PELL
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
++NG F E VW+KAGAQI S GLDYLG P+L+HA
Sbjct: 65 SQNGFTFQEPVWWKAGAQILSSEGLDYLGKPNLVHA 100
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 80 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 139
TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 61
Query: 140 GGLDYLGNPSLIHA 153
GGLDYLGNPSL+HA
Sbjct: 62 GGLDYLGNPSLVHA 75
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 76/77 (98%)
Query: 77 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 136
GWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QI
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQI 60
Query: 137 FSEGGLDYLGNPSLIHA 153
FSEGGLDYLGNP+LIHA
Sbjct: 61 FSEGGLDYLGNPNLIHA 77
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 88/105 (83%), Gaps = 9/105 (8%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTA-----SKSVSSGSPWYGLDRVKYL 57
+STM++SS F+GKAV L+P E+ G+++MRKTA +KS SSGSPWYG DRVKYL
Sbjct: 9 SSTMSVSS-FMGKAVKLSP---EVLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRVKYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 65 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 87/117 (74%), Gaps = 2/117 (1%)
Query: 39 SKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
SK+ + S WYG DR K+LGP+S P YL GE PGDYGWD+AGL ADP T + RE E
Sbjct: 216 SKAPAGLSQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAE 275
Query: 98 VIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+IH RWAMLGALG VFPE L+RN + E VWFKAGAQIFSEGGLDYLG+ L+HA
Sbjct: 276 LIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHA 332
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 84/110 (76%), Gaps = 2/110 (1%)
Query: 46 SPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
S WYG +R K+LGP+S PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWA
Sbjct: 466 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 525
Query: 105 MLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGA+GC PE L R GV+FGE +WFKAGAQIFS GL+Y G P+LIHA
Sbjct: 526 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHA 575
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVK 123
PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWAMLGA+GC PE L R GV+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FGE +WFKAGAQIFS GL+Y G P+LIHA
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHA 91
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 91/125 (72%), Gaps = 11/125 (8%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGLDRV 54
MA+ST+ S+F G+ NEL GGR++MR+T + S WYG DR
Sbjct: 1 MASSTIQ-RSAFAGQTA--LKQSNELVRKVGSFAGGRVTMRRTVKSAPQS--IWYGPDRP 55
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 KYLGPFSEQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 115 ELLAR 119
E+L++
Sbjct: 116 EILSK 120
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 83/107 (77%), Gaps = 5/107 (4%)
Query: 48 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG R K+LGP+S G PSYLTGEFPGDYGWDTAGLSADP+TFA+ RE+EVIH RWAML
Sbjct: 38 WYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAML 97
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCV PELL +G WF AGA IFS+ GL YLG P LI+A
Sbjct: 98 GALGCVVPELL--DGTN--HIAWFNAGATIFSDDGLQYLGIPGLINA 140
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 84/110 (76%), Gaps = 2/110 (1%)
Query: 46 SPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
S WYG +R K+LGP+S PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWA
Sbjct: 239 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 298
Query: 105 MLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGA+GC PE L R GV+FGE +WFKAGAQIFS GL+Y G P+LIHA
Sbjct: 299 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHA 348
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 79/104 (75%), Gaps = 2/104 (1%)
Query: 52 DRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
DR K+LGP+S P YL GE PGDYGWD+AGL ADP T + RE E+IH RWAMLGALG
Sbjct: 2 DRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALG 61
Query: 111 CVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VFPE L+RN + E VWFKAGAQIFSEGGLDYLG+ L+HA
Sbjct: 62 VVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHA 105
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 77/87 (88%), Gaps = 1/87 (1%)
Query: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGE 126
LTGEFPGDYGWDTAGLSADPETF K RE E+IH RWAMLGALGCV PE+LAR G FGE
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+VWF+AGAQIF +GGLDYLG+P+LIHA
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHA 87
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Query: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGE 126
LTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHA 87
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 84/106 (79%), Gaps = 6/106 (5%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYL 57
MA +TMA++S + VGK A ++ GRI+MRKTA+K +SGSPWYG DRV YL
Sbjct: 1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYL 57
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 103
GP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW
Sbjct: 58 GPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 103
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 82/117 (70%), Gaps = 5/117 (4%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
+ +KS S S WYG DR YLG F+ PSYL GEFPGDYGWDTAGLSADPETF++ RE+
Sbjct: 55 SKAKSASGASFWYGADRPGYLGAFT-RSPSYLNGEFPGDYGWDTAGLSADPETFSRYREI 113
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALG V PELL + WF AGA IF G+ YLG P LI+A
Sbjct: 114 EVIHARWAMLGALGIVVPELLDQT----NHVAWFDAGATIFGPKGIQYLGVPGLINA 166
>gi|210162116|gb|ACJ09656.1| putative chloroplast light harvesting chlorophyll a/b binding
protein [Cupressus sempervirens]
Length = 169
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/125 (73%), Positives = 97/125 (77%), Gaps = 15/125 (12%)
Query: 30 GRISMRKTASKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
R++MRK + SVS S SPWYG DRV YL P SGEPPSYLTGEFPGDY WDTA L ADPE
Sbjct: 2 ARVTMRKATTVSVSASTSPWYGPDRVLYLEP-SGEPPSYLTGEFPGDY-WDTARL-ADPE 58
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
T AKNRELEVIHCR +MLGALGCV ELLARNGV EAVWF GAQI GLDYL P
Sbjct: 59 T-AKNRELEVIHCR-SMLGALGCV--ELLARNGVF--EAVWFN-GAQI--SVGLDYL--P 107
Query: 149 SLIHA 153
SL+HA
Sbjct: 108 SLVHA 112
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 48 WYGLDRVKYL-GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+L F P YLTGE+PGDYGWD GLS+DPETFA RE E++H RWAML
Sbjct: 125 WYGPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAML 184
Query: 107 GALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
GALGC+FPE+LA N GV E VWFKAGA + ++ +DYLG+P L+H
Sbjct: 185 GALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQLVH 231
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/67 (98%), Positives = 67/67 (100%)
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 60
Query: 147 NPSLIHA 153
NPSLIHA
Sbjct: 61 NPSLIHA 67
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 79/102 (77%), Gaps = 4/102 (3%)
Query: 4 STMALSSSFVGKAVNLAPSGNELS--NGGRISMRKTASK--SVSSGSPWYGLDRVKYLGP 59
+T+ LSS+F GKAV P + + GR++MRK K + +S SPWYG DRVKYLGP
Sbjct: 2 ATVTLSSTFTGKAVLSTPKERTAAGLDNGRVTMRKATPKKAAATSSSPWYGPDRVKYLGP 61
Query: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH
Sbjct: 62 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 26 LSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
LS+ G ++M + +S WYG +R +LGP S P +L GE PGDYG+D GL+
Sbjct: 85 LSDLGGVAMFAATGEKLSD---WYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLAT 141
Query: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDY 144
P + R+ E+I+ RWAMLG +GC+ PELLARN GV F E VWFK GA +FSE GL+Y
Sbjct: 142 QPTRLERYRQGEIINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNY 201
Query: 145 LGNPSLIHA 153
LGNPSLIHA
Sbjct: 202 LGNPSLIHA 210
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/104 (69%), Positives = 79/104 (75%), Gaps = 8/104 (7%)
Query: 4 STMALSSSFVGKAVNLAPSGNELS----NGGRISMRKTASK--SVSSGSPWYGLDRVKYL 57
+T+ LSS+F GKAV P EL GR++MRK K + +S SPWYG DRVKYL
Sbjct: 2 ATVTLSSTFTGKAVLSTP--KELKAAGLGNGRVTMRKATPKKAAATSSSPWYGPDRVKYL 59
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 83/113 (73%), Gaps = 6/113 (5%)
Query: 35 RKTASKSVS--SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
+KT SK S +G+ WYG DR K+LGPF PSYLTGEFPGDYGWDTAGLSA + K
Sbjct: 47 KKTVSKKPSGPAGAEWYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSATGD-LRK 105
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 145
R +EVIH RW MLGALGC+ PEL+ + E VWFKAGAQIFSEGGLDYL
Sbjct: 106 YRTIEVIHGRWPMLGALGCLVPELIKGD---IAEPVWFKAGAQIFSEGGLDYL 155
>gi|413946552|gb|AFW79201.1| light harvesting complex mesophyll7 [Zea mays]
Length = 244
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 86/105 (81%), Gaps = 6/105 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTASKSVS---SGSPWYGLDRVKY 56
MA+STMALSS+ F GKAVN+ PS + R++MRKTA+K+ SGSPWYG DRV Y
Sbjct: 1 MASSTMALSSTAFAGKAVNV-PSSSAFGEA-RVTMRKTAAKAKPAAASGSPWYGPDRVLY 58
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 101
LGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/68 (95%), Positives = 66/68 (97%)
Query: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 145
D ETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGLDYL
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYL 60
Query: 146 GNPSLIHA 153
GNPSLIHA
Sbjct: 61 GNPSLIHA 68
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 76/91 (83%), Gaps = 2/91 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVK 123
P TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+K
Sbjct: 73 PRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIK 132
Query: 124 FGE-AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
FG+ A+WFKAGA IF +GGL+YLGNPSLIHA
Sbjct: 133 FGDAAIWFKAGAAIFQDGGLNYLGNPSLIHA 163
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAG 133
DYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
AQIF+EGGLDYLGNP+L+HA
Sbjct: 61 AQIFTEGGLDYLGNPNLVHA 80
>gi|308154410|gb|ADO15273.1| light harvesting complex from photosystem I type b [Oxytropis
splendens]
Length = 97
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/64 (96%), Positives = 63/64 (98%)
Query: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
FAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS
Sbjct: 1 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 60
Query: 150 LIHA 153
L+HA
Sbjct: 61 LVHA 64
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAG 133
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 134 AQIFSEGGLDYLGNPSLIHA 153
AQIFSEGGLDYLGNP+L+HA
Sbjct: 61 AQIFSEGGLDYLGNPNLVHA 80
>gi|308154406|gb|ADO15271.1| light harvesting complex from photosystem I type b [Oxytropis
campestris subsp. johannensis]
gi|308154408|gb|ADO15272.1| light harvesting complex from photosystem I type b [Oxytropis
maydelliana]
gi|308154412|gb|ADO15274.1| light harvesting complex from photosystem I type b [Oxytropis
arctobia]
Length = 96
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/63 (96%), Positives = 62/63 (98%)
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 60
Query: 151 IHA 153
+HA
Sbjct: 61 VHA 63
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 82/128 (64%), Gaps = 18/128 (14%)
Query: 1 MATSTMALSSSFVGKAV----NLAPSGNELSN-----GGRISMRKTASKSVSSGSPWYGL 51
MA++ MA +S + + PS + + GRI+M K WYG
Sbjct: 1 MASTIMAPTSRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKEL---------WYGP 51
Query: 52 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 111
DRV YLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC
Sbjct: 52 DRVNYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 111
Query: 112 VFPELLAR 119
+ PE+L +
Sbjct: 112 ITPEVLEK 119
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 67/73 (91%)
Query: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 140
AGLSADP+TFA+ RE+EVIH RWAMLGALGC+ PELLA+NG+ FGEAVWFKAGAQIF +G
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDG 60
Query: 141 GLDYLGNPSLIHA 153
GL+YLGN SL+HA
Sbjct: 61 GLNYLGNESLVHA 73
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 8/123 (6%)
Query: 32 ISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
+MR+T + + + +R +LGP++G PSYL G GDYGWDT+GLS PE
Sbjct: 11 FAMRRTTAATSAP-------ERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALL 63
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+NRELE++H RWAMLGALG + PELLA G E VWFKAGAQIFS GGLDYLGNPSL
Sbjct: 64 RNRELELLHARWAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSL 123
Query: 151 IHA 153
+HA
Sbjct: 124 VHA 126
>gi|383145055|gb|AFG54073.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145056|gb|AFG54074.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145057|gb|AFG54075.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145058|gb|AFG54076.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145059|gb|AFG54077.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145060|gb|AFG54078.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145061|gb|AFG54079.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145062|gb|AFG54080.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145063|gb|AFG54081.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145064|gb|AFG54082.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145065|gb|AFG54083.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145066|gb|AFG54084.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145067|gb|AFG54085.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145068|gb|AFG54086.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145069|gb|AFG54087.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145070|gb|AFG54088.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145071|gb|AFG54089.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145072|gb|AFG54090.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLA+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 151 IHA 153
IHA
Sbjct: 61 IHA 63
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 75/109 (68%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYL-GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
WYG DR K+L F P YLTGE+PGDYGWD GLSADP+ FA RE E++H RWAML
Sbjct: 120 WYGPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAML 179
Query: 107 GALGCVFPELLAR--NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GALGCVFPE++ NG E VW+KAGA + + +DYLG+ IHA
Sbjct: 180 GALGCVFPEVINSYYNG-NIAEPVWWKAGALVLNGQSIDYLGSDKFIHA 227
>gi|302143545|emb|CBI22106.3| unnamed protein product [Vitis vinifera]
Length = 147
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 70/97 (72%), Gaps = 25/97 (25%)
Query: 34 MRKTASKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 91
MRK+ +KS VSSGSPWYG DRVKYLGPFS ADPETFA
Sbjct: 1 MRKSVAKSKAVSSGSPWYGPDRVKYLGPFS-----------------------ADPETFA 37
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
KNRELEVIHCRWAMLGALGCVFPELL+RNGVKFGEAV
Sbjct: 38 KNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAV 74
>gi|361068309|gb|AEW08466.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/63 (93%), Positives = 61/63 (96%)
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
AKNRELEVIH RWAMLGALGCVFPELLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 151 IHA 153
IHA
Sbjct: 61 IHA 63
>gi|210162154|gb|ACJ09675.1| putative chlorophyll a/b-binding protein [Cupressus sempervirens]
Length = 129
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 77/107 (71%), Gaps = 8/107 (7%)
Query: 47 PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
PWY DRV YL P S EPPSYLTGEF DYG DTA S D ET AKNRELEVIH R +ML
Sbjct: 13 PWYEQDRVLYLTPMS-EPPSYLTGEFTSDYGCDTAS-STDTETCAKNRELEVIHSR-SML 69
Query: 107 GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AL CV LA GV EAVWF AGA +FSEGGLDYLG+ SLIHA
Sbjct: 70 SALRCVVA--LATYGVSIVEAVWF-AGA-LFSEGGLDYLGS-SLIHA 111
>gi|169261094|gb|ACA52195.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata
subsp. hookeri]
Length = 94
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 9/90 (10%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTA-----SKSVSSGSPWYGLDRVKYL 57
+STM++SS F+GKAV L+P E+ G+++MRKTA +KS SSGSPWYG DRVKYL
Sbjct: 9 SSTMSVSS-FMGKAVKLSP---EVLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRVKYL 64
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
GPFSGE PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 65 GPFSGESPSYLTGEFPGDYGWDTAGLSADP 94
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 70/107 (65%), Gaps = 23/107 (21%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DRVKYLGPFS + P FA+NR LEVIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQ----------------------TPFAFARNRALEVIHGRWAMLG 85
Query: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PE+L + V F E +WFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 86 ALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHA 132
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ AL++S +G + + + ++A++ + S WYG +R ++LGP
Sbjct: 56 TAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPY 115
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG- 121
E P++LTGE+PGDYG+D AGL DP FA E++HCRWAML ALG V PELL G
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 175
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
V F E VW+K G LDYLG P
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLGIP 202
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ AL++S +G + + + + AS+ + S WYG DR ++LGP
Sbjct: 50 TAVKALANSPLGARLRRRLEDRKAAAAAEADALRAASRGARNNSFWYGGDRPRWLGPVPY 109
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG- 121
+ P YLTGE+PGDYG+D AGL DP FA E++HCRWAML ALG V PELL G
Sbjct: 110 DYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGL 169
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
V F E VW+K G LDYLG P
Sbjct: 170 VHFVEPVWWKVGYAKLQGDNLDYLGIP 196
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ AL++S +G + + + ++A++ + S WYG +R ++LGP
Sbjct: 56 TAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPY 115
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NG 121
E P++LTGE+PGDYG+D AGL DP FA E++HCRWAML ALG V PELL
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFEV 175
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
V F E VW+K G LDYLG P
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLGIP 202
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +GK + + + S A S W+G DR K+LGP
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NG 121
+ P +L G FPGDYG+D AGL DP F K E++H RWAML ALG V PE+L + G
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
VKF E+VW++ G LDYLG P L
Sbjct: 174 VKFAESVWWRVGYAKLEGDTLDYLGIPGL 202
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 50 GLDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
G + +Y G + EP YL G+ +PG +D GLS DP TF + + E+ + R AM+
Sbjct: 223 GPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMV 282
Query: 107 GALGCVFPELLARNG 121
LG L+ + G
Sbjct: 283 AWLGFYVQALVTKKG 297
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 36 KTASKSVSSGSPWYGLDRVKYLGPFSG--EPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
K+ + S + + +YG +R + GPF+ + P YL GE+PGDYG D L PE +AK
Sbjct: 1 KSVAPSQDTRTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKL 60
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
R E+++ RWAMLG GC+ PEL+ N E VWFK GAQIFSE G+DYLG P I+A
Sbjct: 61 RSQELMNGRWAMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFINA 120
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +GK + + + S A S W+G DR K+LGP
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NG 121
+ P +L G FPGDYG+D AGL DP F K E++H RWAML ALG V PE+L + G
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
V F E+VW++ G LDYLG P L
Sbjct: 174 VNFAESVWWRVGYAKLEGDTLDYLGIPGL 202
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 50 GLDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
G + +Y G + EP YL G+ +PG +D GLS DP TF + + E+ + R AM+
Sbjct: 223 GPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMV 282
Query: 107 GALGCVFPELLARNG 121
LG L+ + G
Sbjct: 283 AWLGFYVQALVTKKG 297
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 139
P TFAKNRELEVIHCRWAMLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSE
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE 74
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
+ AL+ S +GK + + + + ++ ++ SPW+G R +LGP S
Sbjct: 78 VAVQALADSKLGKDLLAGLEAQKPLLRRQAAQQEAERRAARQQSPWFGAARPLWLGPLST 137
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG- 121
+PP +L+GE PGDYGWD AGL DP + ELE++H RWAMLGALG V PELL G
Sbjct: 138 QPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAGS 197
Query: 122 VKFGEAVWFKAG-AQIFSEGGLDYLGNPSL 150
F E W+ G A++ + L YLG P L
Sbjct: 198 ATFLEDRWWNVGYAKLTTGEELAYLGVPGL 227
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG DR ++LGP + P +LTGE+PGDYG+D AGL DP FA E++HCRWAML
Sbjct: 94 WYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLA 153
Query: 108 ALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ALG V PELL G V F E VW+K G LDYLG P
Sbjct: 154 ALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIP 195
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G+++ + + S K ++ S WYG +R ++LGP S
Sbjct: 71 TAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKARKESFWYGEERPRWLGPISY 130
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P+YL+GE PGDYG+D AGL+ DP F + E++H RWAML ALG + PE+L +G
Sbjct: 131 QYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGA 190
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E VW++ G LDYLG P L
Sbjct: 191 FHFIEPVWWRVGYSKLKGDTLDYLGIPGL 219
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/56 (89%), Positives = 53/56 (94%)
Query: 98 VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC FPE+L +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 56
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 36 KTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
+ A +V S WY R K+LGP + P +L GE PGDYG+D GLS DP F +
Sbjct: 114 REAQSNVRDESMWYREGRPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFN 173
Query: 96 LEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
E++H RWAML ALG V PELL R GV+F E VW+K G LDYLG P L
Sbjct: 174 FEILHARWAMLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGL 229
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G ++ + S S K ++ S WYG +R ++LGP
Sbjct: 68 TAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPY 127
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P YLTGE PGDYG+D AGLS DP F K E++H RWAML +LG + PE+L G
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E +W++ G LDYLG P L
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLGIPGL 216
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G ++ + S S K ++ S WYG +R ++LGP
Sbjct: 68 TAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPY 127
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P YLTGE PGDYG+D AGLS DP F K E++H RWAML +LG + PE+L G
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E +W++ G LDYLG P L
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLGIPGL 216
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Query: 36 KTASKSVSSGSPWYGLDRVKYLGPFSG--EPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
K+ + + +P+YG +R + GPF+ + P YL GE+PGDYG D L+ P +A+
Sbjct: 13 KSVAPDQDARAPYYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARL 72
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
R E+++ RWAMLG GC+ PEL+ N E VWF GAQIFS+ G+DYLG P I+A
Sbjct: 73 RTQELMNGRWAMLGITGCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFINA 132
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G+++ + S K ++ + S WYG +R ++ GP
Sbjct: 64 TAVKAIANSSLGESLRRRLEEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPY 123
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P YLTGE PGDYG+D AGL D TF K E++H RWAML ALG + PE+L G
Sbjct: 124 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGA 183
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E VW++ G LDYLG P L
Sbjct: 184 FHFAEPVWWRVGYSKLQGETLDYLGIPGL 212
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/51 (98%), Positives = 51/51 (100%)
Query: 103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 46 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 96
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG R ++LGP + P +L GEFPGDYG+D AGL DP FA E++HCRWAML
Sbjct: 90 WYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 149
Query: 108 ALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ALG V PELL G V F E VW+K G LDYLG P
Sbjct: 150 ALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIP 191
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 15 KAVNLAPSGNELSNGGRISMRKTASKSVSSG-----------SPWYGLDRVKYLGPFSGE 63
KA+ +P G L ++ RKT + SS S WYG DR ++LGP S E
Sbjct: 63 KAIANSPLGESLQR--KMEERKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPISYE 120
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 122
PSYLTGE PGDYG+D AGL DP K E++H RWAML ++G + PE+L G
Sbjct: 121 YPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAF 180
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLG 146
F E VW++ G LDYLG
Sbjct: 181 HFVEPVWWRVGYSKLKGDTLDYLG 204
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G ++ + S K+ ++ + S WYG +R ++ GP
Sbjct: 61 TAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPY 120
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P YLTGE PGDYG+D AGL D TF K E++H RWAML ALG + PE+ G
Sbjct: 121 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGT 180
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E VW++ G L+YLG P L
Sbjct: 181 FHFAEPVWWRVGYSKLQGETLEYLGIPGL 209
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
W+G R ++LGP + P +L GEFPGDYG+D AGL DP FA E++HCRWAML
Sbjct: 98 WFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 157
Query: 108 ALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLG 146
ALG V PELL G V F E VW+K G LDYLG
Sbjct: 158 ALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLG 197
>gi|116783810|gb|ABK23091.1| unknown [Picea sitchensis]
Length = 110
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 69/99 (69%), Gaps = 10/99 (10%)
Query: 1 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TASKSV--SSGSPWYG 50
MA+ + +F G ++ + P N+L G R++MRK T KSV SS SPWYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 51 LDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 103
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 70 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 129
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 130 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 178
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 177
>gi|240064638|gb|ACS44644.1| putative chlorophyll a/b binding protein [Lemna minor]
Length = 49
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNG
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 49
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 177
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 35 RKTASKSVSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 83
+K +VSS SP WYG DR YL E P YLTGE PGDYG+D GL
Sbjct: 44 QKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGL 103
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 142
PE FAK + E+IH RWAMLGA G V PE + G G EAVWFK GA + L
Sbjct: 104 GKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTL 163
Query: 143 DYLGN 147
+Y GN
Sbjct: 164 NYFGN 168
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 35 RKTASKSVSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 83
+K +VSS SP WYG DR YL E P YLTGE PGDYG+D GL
Sbjct: 44 QKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGL 103
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 142
PE FAK + E+IH RWAMLGA G V PE + G G EAVWFK GA + L
Sbjct: 104 GKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTL 163
Query: 143 DYLGN 147
+Y GN
Sbjct: 164 NYFGN 168
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P++LTGE+PGD G+D GL+ DPE FAKNR+ EV H RWAMLG +GC+ PE+ G+
Sbjct: 368 EAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLGI 427
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A W++AGA + + G LDYLGNP+L+HA
Sbjct: 428 AQLPA-WYEAGA-VANTGSLDYLGNPNLVHA 456
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P++LTGE+PGD G+D GL+ DP FAK R+ EV H RWAMLG +GC+ PE+ G+
Sbjct: 159 EAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGI 218
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
A W+ A A + + LDYLGNP+L+HA
Sbjct: 219 AQLPA-WYDA-ATVANTSNLDYLGNPNLVHA 247
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 114 PELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
PE+ G+ A W++AGA + + G LDYLGNP+L+HA
Sbjct: 1 PEVFGNLGIAQLPA-WYEAGA-VANTGSLDYLGNPNLVHA 38
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 35 RKTASKSVSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 83
+K +VSS SP WYG DR YL E P YLTGE PGDYG+D GL
Sbjct: 44 QKPKPSAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGL 103
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 142
PE FAK + E+IH RWAMLGA G V PE + G G EAVWFK GA + L
Sbjct: 104 GKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTL 163
Query: 143 DYLGN 147
Y GN
Sbjct: 164 SYFGN 168
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D +GLS PE F+K + E+IH RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 179
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 181
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 35 RKTASKSVSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 83
+K +VSS SP WYG DR YL E P YLTGE PGDYG+D GL
Sbjct: 44 QKPKPSAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGL 103
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 142
PE FAK + E+IH RWAMLGA G V PE + G G EAVWFK GA + L
Sbjct: 104 GKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTL 163
Query: 143 DYLGN 147
Y GN
Sbjct: 164 SYFGN 168
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 35 RKTASKSVSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 83
+K VSS SP WYG DR YL E P YLTGE PGDYG+D GL
Sbjct: 43 QKPKPVPVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGL 102
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 142
PE FAK + E+IH RWAMLGA G V PE + G G EAVWFK GA + L
Sbjct: 103 GKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTL 162
Query: 143 DYLGN 147
+Y GN
Sbjct: 163 NYFGN 167
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + G L+Y GN
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGN 177
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS PE F+K + E+IH RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 152
MLGA G + PE + G G EAVWFK GA + G L+Y G P I+
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPIN 179
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 49/49 (100%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 49
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 49/49 (100%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 49
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 49/49 (100%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 49
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
+ AL+ S +GK + N+ R+ + SPWYG +R K+LGP S
Sbjct: 23 AAVQALADSDLGKKLQRDLEANKSEYKRAEQQREKELAAARDESPWYGEERPKWLGPLSY 82
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P+YL G PGDY +D L+ D + F + E E++H RWAMLGALG PE+L +GV
Sbjct: 83 DYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGV 142
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLG 146
F EA W+ G L+YLG
Sbjct: 143 SDFLEARWWAVGGAKLQGEDLNYLG 167
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR YL G E P YL GE PGDYG+D GL PE FAK + E+IH RWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE L + G G EAVWFK GA + L+Y GN
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 171
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP E P++LTGE+PGDYG+D AGL DP FA E++HCRWAML ALG V PELL
Sbjct: 35 GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELL 94
Query: 118 ARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNP 148
G V F E VW+K G LDYLG P
Sbjct: 95 DLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIP 126
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
T S + + WYG DR +L E P YL GE GDYG+D GL PE FAK
Sbjct: 54 TVSAANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKY 113
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE L + G G EAVWFK GA + L Y G
Sbjct: 114 QAFELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFG 167
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P+YLTGE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 174
>gi|8698905|gb|AAF78518.1|AF195221_1 chlorophyll a/b-binding protein [Pyrus pyrifolia]
Length = 79
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/49 (93%), Positives = 48/49 (97%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGL YLGNPSL+HA
Sbjct: 1 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLGYLGNPSLVHA 49
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DRV +L G + E P+YL GE GDYG+D GL D ET AK RE E++H RWA
Sbjct: 49 WYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWA 108
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE L NG VWF+ GA++ + G L+Y P
Sbjct: 109 MLAAAGILIPEGLQANGANIKGGVWFETGAEMLNGGTLNYFAVP 152
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/49 (93%), Positives = 48/49 (97%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGCVFPELLA+ GVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 49
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 42 VSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
V+S SP WYG DR +L E P YL GE PGDYG+D GLS PE F
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 168
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 173
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG-VK 123
P +L GEFPGDYG+D AGL DP FA E++HCRWAMLGALG V PELL G V
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSL 150
F E VW+K G LDYLG P L
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGL 89
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 42 VSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
V+S SP WYG DR +L E P YL GE PGDYG+D GLS PE F
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 168
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS +P+ FA+ + E+IH RWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWA 124
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGN 168
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 42 VSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
V+S SP WYG DR +L E P YL GE PGDYG+D GLS PE F
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 168
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Query: 42 VSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
V+S SP WYG DR +L E P YL GE PGDYG+D GLS PE F
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 168
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 48 WYGLDRVKYLGPFSG-----EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
WYG DR +L G E P YL GE PGDYG+D GLS +P+ FA+ + E+IH R
Sbjct: 65 WYGPDRRIFL--LEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHAR 122
Query: 103 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
WAMLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 123 WAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGN 168
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G V PE + G G EAVWFK GA + L+Y G
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGK 170
>gi|226431242|gb|ACO55633.1| chloroplast photosystem II type I chlorophyll a/b-binding protein
[Arachis diogoi]
Length = 69
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGP 59
MA STMALSS S G+A+ L+PS EL GR++MRK A+K VSSGSPWYG DRVKYLGP
Sbjct: 1 MAASTMALSSPSLAGQAIKLSPSNPEL-GVGRVTMRKAATKQVSSGSPWYGPDRVKYLGP 59
Query: 60 FSGEPPSYLT 69
FSGEPPSYLT
Sbjct: 60 FSGEPPSYLT 69
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 48 WYGLDRVKYLGPFSG-----EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
WYG RV +L SG + P+YLTG+ GDYG+D GL DPE K R E+IH R
Sbjct: 64 WYGPSRVLFLP--SGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHAR 121
Query: 103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
WAML A G + PE LA NG A WF+ GA++ + G L+Y P
Sbjct: 122 WAMLAAAGMIIPEGLAANGADIKGATWFETGAEMLNGGTLNYFAVP 167
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ ALS S VGK V ++ A + S WYG R + GP G
Sbjct: 10 TALTALSKSSVGKQVQQQLEARLPELRAEAERQRQAHQQARQRSKWYGASRPRLPGPLGG 69
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+L GE GD G+D L DP FA+ RE+E++H RWAMLG +GC+ PELLA GV
Sbjct: 70 A--QHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGV 127
Query: 123 KFGEAVWFKAGA 134
+ GE VW+K GA
Sbjct: 128 ELGEPVWWKVGA 139
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ ALS S VGK V + A S WYG R + GP
Sbjct: 132 TALTALSKSSVGKQVQEQLEAKLPELQAEADKTRAAHAEARRQSKWYGPSRPRLPGPLGS 191
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+L G GD G+D GLS + +FAK +E E++H RWAMLG +GC+ PELLA GV
Sbjct: 192 A--EHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGV 249
Query: 123 KFGEAVWFKAGA 134
GE VW+K GA
Sbjct: 250 DLGEPVWWKVGA 261
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS P+ F K + E+IH RWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L+Y GN
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 171
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS P+ F K + E+IH RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 174
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 175
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L G + E P YL GE GDYG+D GL DPET AK RE E++H RWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE L NG WF+ GA++ + G L+Y P
Sbjct: 112 MLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 155
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/45 (97%), Positives = 45/45 (100%)
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HA
Sbjct: 1 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 45
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YLTGE PGDYG+D GLS P+ F K + E+IH RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 175
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/49 (87%), Positives = 48/49 (97%)
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGALGC FPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 49
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PGDYG+D GLS PE FAK + E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L Y G
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGK 172
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L G + E P YL GE GDYG+D GL DPET AK RE E++H RWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE L NG WF+ GA++ + G L+Y P
Sbjct: 82 MLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 125
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P+YL GE PGDYG+D GL PE FAK + E+IH RWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 163
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L E P YL GE PG+YG+D GLS PE FAK + E+IH RWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGN 147
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 171
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 38 ASKSVSSGSPWYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
S++ + WYG DR +L E P YL GE GDYG+D GL PE FAK +
Sbjct: 52 VSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQ 111
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G
Sbjct: 112 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 38 ASKSVSSGSPWYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
S++ + WYG DR +L E P YL GE GDYG+D GL PE FAK +
Sbjct: 52 VSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQ 111
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G
Sbjct: 112 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 38 ASKSVSSGSPWYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
S++ + WYG DR +L E P YL GE GDYG+D GL PE FAK +
Sbjct: 52 VSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQ 111
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G
Sbjct: 112 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG R YL G + P YLTGE PGDYG+D GLS P F K + E+IH RWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G V PE + G + G EAVWFK GA + G L+Y G
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFG 160
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 35 RKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
RK ++ + G S +YG +RVK+LG E P++L G GD G+D L+A E +
Sbjct: 17 RKEMERAEARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDPLNLAAKSEDLERY 76
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG-AQIFSEGGLDYLG 146
RELE++H RWAMLG +G PE L R GV GE VW+K G A++ S+ LDYLG
Sbjct: 77 RELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMNSDIALDYLG 131
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 22 SGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPS-YLTGE--FPGDYGW 78
SG ++ G I++ A + V G P Y +Y+G S EP YL G+ +PG +
Sbjct: 133 SGFHIAGGSGIAV-IAACQLVLMGGPEYA----RYVGINSLEPVGVYLPGDKDYPGGAPF 187
Query: 79 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
D S D E F K + +E+ HCR AM+ ALGC ++ R G
Sbjct: 188 DPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQG 230
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 60 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 119
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 162
>gi|89574390|gb|ABD77412.1| chloroplast chlorophyll a/b-binding protein [Zingiber officinale]
Length = 130
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 20 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 64
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR YL E P+YLTGE PGDYG+D GLS PE F + + E+IH RWA
Sbjct: 48 WYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 107
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G V PE + G G EAVW+K GA + + Y G
Sbjct: 108 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFG 150
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P YL GE PGDYG+D GLS PE F+K + E+IH RWAMLGA G + PE + G
Sbjct: 22 EVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 81
Query: 123 KFG-EAVWFKAGAQIFSEGGLDYLGN 147
G EAVWFK GA + L+Y GN
Sbjct: 82 NCGPEAVWFKTGALLLDGNTLNYFGN 107
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P YL GE PGDYG+D GLS PE F+K + E+IH RWAMLGA G + PE + G
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 123 KFG-EAVWFKAGAQIFSEGGLDYLGN 147
G EAVWFK GA + L+Y GN
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGN 86
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 11/154 (7%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTA-----SKSVSSGSPWYGLDRVKYL 57
T+ AL++S +G+++ L ++++++++ + S WYG +R ++L
Sbjct: 62 TAVKALANSPLGESLQ-----RRLEESKKVAVKESSKFQALTAKARKESLWYGEERPRWL 116
Query: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
GP + P+YLTGE PGDYG+D AGLS D F + E++H RWAML ALG + PE+L
Sbjct: 117 GPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVL 176
Query: 118 ARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+G F E VW++ G LDYLG P L
Sbjct: 177 DLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGL 210
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GLS PE F K + E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR YL E P YLTGE PGDYG+D GLS PE F + + E+IH RWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G V PE + G G EAVW+K GA + + Y G
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFG 108
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GL PE F K + E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWA 144
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|209778965|gb|ACI87793.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 106
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 141
GLSADPETFA +RELE IH R AM+GALGCV PELLA +GV+ GEAVW KA FSEGG
Sbjct: 2 GLSADPETFAMHRELE-IHSRRAMMGALGCVIPELLAIDGVRCGEAVWCKAAQ--FSEGG 58
Query: 142 LDYLGNPSLIHA 153
LDYL +IHA
Sbjct: 59 LDYL-RYVMIHA 69
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 48 WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L + P YL GE PGDYG+D GL PE F K + E+IH RWA
Sbjct: 84 WYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWA 143
Query: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
MLGA G + PE + G G EAVWFK GA + G L Y G
Sbjct: 144 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 186
>gi|192764705|gb|ACF05896.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764725|gb|ACF05906.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 98 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 57
>gi|192764699|gb|ACF05893.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764701|gb|ACF05894.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764703|gb|ACF05895.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764707|gb|ACF05897.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764709|gb|ACF05898.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764711|gb|ACF05899.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764713|gb|ACF05900.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764715|gb|ACF05901.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764717|gb|ACF05902.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764719|gb|ACF05903.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764721|gb|ACF05904.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764723|gb|ACF05905.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764727|gb|ACF05907.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764729|gb|ACF05908.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764731|gb|ACF05909.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764733|gb|ACF05910.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764735|gb|ACF05911.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764737|gb|ACF05912.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764739|gb|ACF05913.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764741|gb|ACF05914.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764743|gb|ACF05915.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764745|gb|ACF05916.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 98 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 57
>gi|305855829|gb|ADM67755.1| putative Lhcb3 [Pieris japonica var. taiwanensis]
gi|305855831|gb|ADM67756.1| putative Lhcb3 [Rhododendron ovatum]
gi|305855833|gb|ADM67757.1| putative Lhcb3 [Rhododendron ellipticum]
gi|305855835|gb|ADM67758.1| putative Lhcb3 [Rhododendron mariesii]
gi|305855837|gb|ADM67759.1| putative Lhcb3 [Rhododendron nakaharae]
gi|305855839|gb|ADM67760.1| putative Lhcb3 [Rhododendron noriakianum]
gi|305855841|gb|ADM67761.1| putative Lhcb3 [Rhododendron kanehirai]
gi|305855843|gb|ADM67762.1| putative Lhcb3 [Rhododendron simsii]
gi|305855845|gb|ADM67763.1| putative Lhcb3 [Rhododendron oldhamii]
gi|305855849|gb|ADM67765.1| putative Lhcb3 [Rhododendron breviperulatum]
gi|305855853|gb|ADM67767.1| putative Lhcb3 [Rhododendron formosanum]
gi|338807936|gb|AEJ07692.1| putative Lhcb3 [Rhododendron simsii]
gi|338807940|gb|AEJ07694.1| putative Lhcb3 [Rhododendron seniavinii]
gi|338807944|gb|AEJ07696.1| putative Lhcb3 [Rhododendron simsii]
gi|338807946|gb|AEJ07697.1| putative Lhcb3 [Rhododendron scabrum]
Length = 66
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 98 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 57
>gi|305855847|gb|ADM67764.1| putative Lhcb3 [Rhododendron rubropilosum]
gi|305855851|gb|ADM67766.1| putative Lhcb3 [Rhododendron kawakamii]
gi|305855855|gb|ADM67768.1| putative Lhcb3 [Rhododendron hyperythrum]
gi|305855857|gb|ADM67769.1| putative Lhcb3 [Rhododendron rubropunctatum]
gi|305855859|gb|ADM67770.1| putative Lhcb3 [Rhododendron morii]
gi|305855861|gb|ADM67771.1| putative Lhcb3 [Rhododendron pseudochrysanthum]
gi|338807938|gb|AEJ07693.1| putative Lhcb3 [Rhododendron chihsinianum]
gi|338807942|gb|AEJ07695.1| putative Lhcb3 [Rhododendron wiltonii]
Length = 66
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 98 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 57
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 108 ALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ALGC+ PELL++NGV+FGEAVWFKAGAQIF EGGLDYLGNPSL+HA
Sbjct: 2614 ALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA 2659
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
S YG RVK+LG E P++L G GD G+D GL D + RELE++H RWAM
Sbjct: 155 SSLYGARRVKFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKD--DLPRMRELELLHARWAM 212
Query: 106 LGALGCVFPELLARNGV-KFGEAVWFKAG-AQIFSEGGLDYLG 146
LG +G PELL R GV GE VW+K G A++ S+ LDY G
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFG 255
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 38 ASKSVSSGSPWYGLDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNR 94
A + V G P Y +Y+G S EP YL G+ +PG +D +S D + F K +
Sbjct: 272 ACQVVLMGGPEYA----RYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQK 327
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNG 121
+E+ H R AM+ LG + R G
Sbjct: 328 VMEIKHGRLAMIAMLGVAAQAFVTRAG 354
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Query: 3 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSG 62
T+ A+++S +G+++ N+ + S K ++ + S WYG +R ++LGP
Sbjct: 64 TAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPY 123
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P+YLTGE PGDYG+D AGL DP F K E++H RWAML ALG + PELL G
Sbjct: 124 DYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGA 183
Query: 123 -KFGEAVWFKAGAQIFSEGGLDYLGNP 148
F E VW++ G LDYLG P
Sbjct: 184 FHFVEPVWWRVGYSKLKGDTLDYLGIP 210
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 110 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
G FPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 1 GASFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 44
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN--- 120
PP+YLTGEFPGD G+D AGLSADPETF + R E+IH R AML +G + P+ L +
Sbjct: 94 PPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFLGKGNWF 153
Query: 121 ------GVKFGEAVWFKAGAQIFSEG-GLDYLGNPSLIH 152
G+ G+ F G +F G GL+ NP+ I+
Sbjct: 154 EAPAIAGIDIGDVQQFILGYGVFEFGRGLNKSSNPAAIY 192
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
WYG D +LG S + PSYLTGE PGDY +D GL DP K E++H RW L
Sbjct: 71 WYGEDGPPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTLA 130
Query: 108 ALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYL 145
+ V P++L G V F E VW++AG LDYL
Sbjct: 131 FVSAVIPKILNLLGAVHFVEPVWWRAGYSKLKVNTLDYL 169
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYLGPFSGEP---PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG R +L +P P+YL G GDYG+D GL D T K R E+IH RWA
Sbjct: 93 WYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWA 152
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE L NG WF+ GA++ + G L+Y P
Sbjct: 153 MLAAAGIIIPEGLQANGAAIKGGTWFETGAEMLNGGTLNYFAVP 196
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR +L G + E L G PGDYG+D GL+ D ET +K + E++H RWA
Sbjct: 48 WYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWA 107
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE LA NG A WF+ GA + + G L++ P
Sbjct: 108 MLAAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVP 151
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG +R +L G + P YL GE GDYG+D GL D E K R E++H RWA
Sbjct: 46 WYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWA 105
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 148
ML A G + PE L NG WF+ GA++ + G L+Y P
Sbjct: 106 MLAAAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVP 149
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 31 RISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
R+S T + S+ + D + L PP +L G PGD+G+D GL++DPE+
Sbjct: 41 RVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL 100
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
N++ E++HCRWAMLGA G PELL + G+ W+ AG Q
Sbjct: 101 RWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 12/112 (10%)
Query: 30 GRISMRKTASK---SVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSA 85
GR +R+ A++ +VS+ +P DR + F G PP +L G PGD+G+D GL +
Sbjct: 35 GRTKLREAAARPSFAVSAAAP----DRPIW---FPGSVPPPWLDGSLPGDFGFDPFGLGS 87
Query: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
DPE+ N + E++HCRWAMLGA G PE L + G+ W+ AG Q +
Sbjct: 88 DPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LSTPSWYTAGEQQY 138
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 60 PPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI- 118
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 119 LNTPSWYTAGEQ 130
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 16/132 (12%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PP 65
A +S VG+AV+L S + + S++V + P + F G PP
Sbjct: 38 AKASFLVGRAVSLRQSKAAMPRRAAV----IVSEAVQTERPLW----------FPGTTPP 83
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125
+L G P D+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+
Sbjct: 84 PWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI-LN 142
Query: 126 EAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 143 TPSWYTAGEQEY 154
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
S M S +F+G+ + + + ++ R+ T + P + F G
Sbjct: 24 SPMGTSKAFLGRKLKV---NSNIAAPVRVRSTTTVCAAAEPDRPLW----------FPGS 70
Query: 64 -PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
PP +L G PGD+G+D GLS+DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 71 TPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI 130
Query: 123 KFGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 131 -LNTPSWYTAGEQ 142
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 16/130 (12%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PP 65
A +S VG+AV+L S + + S++V + P + F G PP
Sbjct: 38 AKASFLVGRAVSLRQSKAAMPRRAAV----IVSEAVQTERPLW----------FPGTTPP 83
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125
+L G P D+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+
Sbjct: 84 PWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI-LN 142
Query: 126 EAVWFKAGAQ 135
W+ AG Q
Sbjct: 143 TPSWYTAGEQ 152
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 131
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 132 LNTPSWYTAGEQ 143
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 72 PPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 130
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 131 LNTPSWYTAGEQ 142
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI- 119
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 120 LNTPSWYTAGEQ 131
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI- 119
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 120 LNTPSWYTAGEQ 131
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 60 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI- 118
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 119 LNTPSWYTAGEQ 130
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 66 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI- 124
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 125 LNTPSWYTAGEQEY 138
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS------VSSGSPWYGLDRVKYLGPF 60
A +SSF+G A GR+ +R+ S S V + +P DR + F
Sbjct: 20 ARASSFLGGA----------GRSGRLLLRQAESSSARASFAVRAAAP----DRPIW---F 62
Query: 61 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L +
Sbjct: 63 PGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK 122
Query: 120 NGVKFGEAVWFKAGAQIF 137
G+ W+ AG Q +
Sbjct: 123 IGI-LNTPSWYTAGEQQY 139
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Query: 28 NGGRISMRKTASKSVSSGSPWYGL----DRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAG 82
+G R+++RK S V+S S DR + F G PP +L G PGD+G+D G
Sbjct: 36 SGKRLTVRKHTSPVVASRSVTVCAVADPDRPLW---FPGSTPPPWLDGSLPGDFGFDPLG 92
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 133
L +DPET N + E++HCRWAMLGA G PE L + G+ W+ AG
Sbjct: 93 LGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSWYDAG 142
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PELL + G+
Sbjct: 62 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI- 120
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 121 LNTPSWYTAGEQTY 134
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/39 (92%), Positives = 38/39 (97%)
Query: 115 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHA
Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 39
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 60 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI- 118
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 119 LNTPSWYTAGEQ 130
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GLS+DP++ N + E++HCRWAMLGA G PE L + G+
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 119
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 120 LNTPSWYTAGEQ 131
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS------VSSGSPWYGLDRVKYLGPF 60
A +SSF+G A GR+ +R+ S S V + +P DR + F
Sbjct: 20 ARASSFLGGA----------GRSGRLLLRQAESSSARASFAVRAAAP----DRPIW---F 62
Query: 61 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L +
Sbjct: 63 PGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK 122
Query: 120 NGVKFGEAVWFKAGAQIF 137
G+ W+ AG Q +
Sbjct: 123 IGI-LNTPSWYTAGEQQY 139
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PELL + G+
Sbjct: 57 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI- 115
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 116 LNTPSWYTAGEQ 127
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + GV
Sbjct: 64 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV- 122
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 123 LNTPFWYTAGEQQY 136
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + GV
Sbjct: 64 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV- 122
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 123 LNTPFWYTAGEQQY 136
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 31 RISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGL-SADPE 88
R+ + A+++ YG R K+L G P P +L G GD G+D GL S P
Sbjct: 160 RVERERAAARATMPAH--YGPTRRKFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPG 217
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFS--EGGLDYL 145
+ RELE++H RWAMLG +G PE LAR G++ GE VW+K GA + + LDYL
Sbjct: 218 DLDRYRELELLHGRWAMLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYL 277
Query: 146 G 146
G
Sbjct: 278 G 278
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 67 YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 111
YL G+ +PG +D G+SAD F + + E+ H R AM+ LGC
Sbjct: 321 YLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMVAMLGC 367
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + GV
Sbjct: 64 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV- 122
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 123 LNTPFWYTAGEQQY 136
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PELL + G+
Sbjct: 59 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI- 117
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 118 LNTPSWYTAGEQ 129
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + GV
Sbjct: 74 PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV- 132
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 133 LNTPFWYTAGEQQY 146
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 38/38 (100%)
Query: 116 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
LL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 5 LLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 42
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PP 65
A +S VG+AV+L S + + S++V + P + F G PP
Sbjct: 38 AKASFLVGRAVSLRQSKAAMPRRAAV----IVSEAVQTERPLW----------FPGTTPP 83
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125
+L G P D+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+
Sbjct: 84 PWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI-LN 142
Query: 126 EAVWFKAG 133
W+ AG
Sbjct: 143 TPSWYTAG 150
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS +G T S V+ + W F
Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------F 49
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L
Sbjct: 50 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-- 107
Query: 120 NGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 148
G W KA +G YLGNP
Sbjct: 108 -----GLGNWVKAQEWAALPDGQATYLGNP 132
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS +G T S V+ + W F
Sbjct: 26 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------F 74
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L
Sbjct: 75 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-- 132
Query: 120 NGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 148
G W KA +G YLGNP
Sbjct: 133 -----GLGNWVKAQEWAALPDGQATYLGNP 157
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PE L + G+
Sbjct: 75 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGI- 133
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 134 LNTPSWYTAG 143
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE L + G+
Sbjct: 76 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 134
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 135 LNTPSWYTAG 144
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 540 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 596
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 597 ----GKGAWFEAGDSV 608
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 914 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 970
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 971 ----GKGAWFEAGDSV 982
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +LTGEFPGD G+D GLS DP F + R EV H R AMLG +GC+ PEL
Sbjct: 166 PPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELF------ 219
Query: 124 FGEAVWFKAGAQIFSEGGL 142
F + WF + + GL
Sbjct: 220 FSQGPWFDLSSFNLTRLGL 238
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL
Sbjct: 727 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------ 780
Query: 124 FGEAVWFK 131
G WF+
Sbjct: 781 -GNGAWFQ 787
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 7/68 (10%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PS+LTGE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L
Sbjct: 359 PSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYL------- 411
Query: 125 GEAVWFKA 132
G+ +W++A
Sbjct: 412 GKGIWYEA 419
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PP 65
A +S VG+AV+L + + + T S++V + P + F G PP
Sbjct: 38 AKASFLVGRAVSLRQTKAAMPRRAAV----TVSQAVQTERPLW----------FPGNTPP 83
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125
+L G PGD+G+D GL +DPET + E++HCRWAMLGA G PEL + G+
Sbjct: 84 PWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGI-LN 142
Query: 126 EAVWFKAG 133
W+ AG
Sbjct: 143 TPSWYTAG 150
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 540 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 596
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 597 ----GKGAWFEAGDSV 608
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 914 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 970
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 971 ----GKGAWFEAGDSV 982
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +LTGEFPGD G+D GLS DP F + R EV H R AMLG +GC+ PEL
Sbjct: 166 PPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELF------ 219
Query: 124 FGEAVWF 130
F + WF
Sbjct: 220 FSQGPWF 226
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL
Sbjct: 727 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------ 780
Query: 124 FGEAVWFK 131
G WF+
Sbjct: 781 -GNGAWFQ 787
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 7/68 (10%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L
Sbjct: 359 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL------- 411
Query: 125 GEAVWFKA 132
G+ +W++A
Sbjct: 412 GKGIWYEA 419
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D AGL+ADP+ + + R EV + R AML +GCV+PELL NGV
Sbjct: 572 PPAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVW 630
Query: 124 FGEAVWFKAGAQIFS 138
F VW K F+
Sbjct: 631 F--EVWNKVDFYRFA 643
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTGEFPGD G+D GLS DP+ FA+ R EV H R AMLG +GCV E L G
Sbjct: 17 PPAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWLFNKGAW 76
Query: 124 F 124
F
Sbjct: 77 F 77
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP++LTGE+P D G+D L+ADP +A+ R EV H R +ML +G + PELL
Sbjct: 761 QPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILPELL----- 815
Query: 123 KFGEAVWFKAGAQI 136
G+ WF+ G +
Sbjct: 816 --GKGAWFEVGNSV 827
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 19/111 (17%)
Query: 22 SGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
+ N L+ GG ++M T+ K +DR + G PSYLTG++ GD G+D A
Sbjct: 174 TANILTGGGSVAMFSTSGK----------VDRPLWFP--GGYAPSYLTGQYFGDRGFDPA 221
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
GL+ADP+ F + R EV H R AML +G V P++L G+ W++A
Sbjct: 222 GLAADPKVFERMRVSEVYHGRLAMLAIVGAVVPDIL-------GKGAWYEA 265
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP++LTGE+P D G+D L+ADP +A+ R EV H R +ML +G + PELL
Sbjct: 388 QPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL----- 442
Query: 123 KFGEAVWFKAGAQI 136
G+ WF+ G +
Sbjct: 443 --GKGAWFEVGNSV 454
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 131
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 132 LNTPSWYTAG 141
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 131
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 132 LNTPSWYSAG 141
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 131
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 132 LNTPSWYSAG 141
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +LTGEFPGD G+D +A+PE+F + R EV H R AMLG GC+ PELL R
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR----- 317
Query: 125 GEAVWFKAGAQI 136
VWF+AG +
Sbjct: 318 --GVWFQAGESV 327
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D GL+ DP T+ + R EV H R AMLG +G + PEL
Sbjct: 79 PPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ------ 132
Query: 124 FGEAVWFKAGAQIFSEG 140
G+ W+ + F G
Sbjct: 133 -GQGAWYTLSEKQFGPG 148
>gi|157965827|gb|ABW06950.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 610
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D AGL+ADP+ + + R EV + R AML +GCV+PELL NGV
Sbjct: 258 PPAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELLG-NGVW 316
Query: 124 FGEAVWFK 131
F VW K
Sbjct: 317 F--EVWNK 322
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTGE+P D G+D L+ADP +A+ R EV H R +ML +G + PE+L
Sbjct: 75 PPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL------ 128
Query: 124 FGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 129 -GKGAWFEAGNSV 140
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTGE+P D G+D L+ADP +A+ R EV H R +ML +G + PE+L
Sbjct: 446 PPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL------ 499
Query: 124 FGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 500 -GKGAWFEAGNSV 511
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 282 DAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 338
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 339 ----GKGAWFEAGDSV 350
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
EPP++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 656 DAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL--- 712
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 713 ----GKGAWFEAGDSV 724
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL NG
Sbjct: 469 PPRYLTGEAFGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAW 527
Query: 124 FGEAVWFKAGAQIFS 138
F +W K F+
Sbjct: 528 F--QIWDKVDFNRFA 540
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
Query: 6 MALSSSFVGKA--VNLAP------SGNELSNGGRISM-RKTASKSVSSGSPWYGLDRVKY 56
+ + S GK+ VNL+ S N L+ GG ++M + K+ S P + + +
Sbjct: 42 LEVQSHLTGKSPLVNLSEHLSNPASVNILTGGGSVAMFYASGRKTQSEDRPLWFPNTLA- 100
Query: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
PS+LTGE+ GD G+D AGL+ADPETF + R EV H R AML +G + P+
Sbjct: 101 --------PSWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLAMLAVVGALVPDY 152
Query: 117 LARNGVKFGEAVWFKA 132
L G+ +W++A
Sbjct: 153 L-------GKGIWYEA 161
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL++DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 132
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 133 LNTPSWYTAG 142
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +LTGEFPGD G+D +A+PE+F + R EV H R AMLG GC+ PELL R
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR----- 317
Query: 125 GEAVWFKAGAQI 136
VWF+AG +
Sbjct: 318 --GVWFQAGESV 327
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +LTGEFPGD G+D +A+PE+F + R EV H R AMLG GC+ PELL R
Sbjct: 625 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR----- 679
Query: 125 GEAVWFKAGAQI 136
VWF+AG +
Sbjct: 680 --GVWFQAGESV 689
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D GL+ DP T+ + R EV H R AMLG +G + PEL
Sbjct: 79 PPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ------ 132
Query: 124 FGEAVWFKAGAQIFSEG 140
G+ W+ + F G
Sbjct: 133 -GQGAWYTLSEKQFGPG 148
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D GL+ DP T+ + R EV H R AMLG +G + PEL
Sbjct: 441 PPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ------ 494
Query: 124 FGEAVWFKAGAQIFSEG 140
G+ W+ + F G
Sbjct: 495 -GQGAWYTLSEKQFGPG 510
>gi|157965823|gb|ABW06948.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 582
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 7/68 (10%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP+YLTGEFP D G+D AGL+ADP+ + + R EV + R AML +GCV+PELL
Sbjct: 228 PPAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELL------ 281
Query: 124 FGEAVWFK 131
G VWF+
Sbjct: 282 -GNGVWFE 288
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTGE+P D G+D L+ADP +A+ R EV H R +ML +G + PE+L
Sbjct: 45 PPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL------ 98
Query: 124 FGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 99 -GKGAWFEAGNSV 110
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTGE+P D G+D L+ADP +A+ R EV H R ML +G + PE+L
Sbjct: 418 PPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLCMLAIVGAIVPEVL------ 471
Query: 124 FGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 472 -GKGAWFEAGNSV 483
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 7 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PP 65
A +S VG+AV+L S + + S++V + P + F G PP
Sbjct: 38 AKASFLVGRAVSLRQSKAAMPRRAAV----IVSEAVQTERPLW----------FPGTTPP 83
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+L G P D+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+
Sbjct: 84 PWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI 140
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 21/144 (14%)
Query: 9 SSSFVG-KAVNLAPSGNELSNG----GRISMRKTASKS------VSSGSPWYGLDRVKYL 57
SSSF A+ AP + G GR+ +R+ S S V + +P DR +
Sbjct: 8 SSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAP----DRPIW- 62
Query: 58 GPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
F G PP +L G PGD+G+D GL +DPE+ N + +++HCRWAMLGA G PE
Sbjct: 63 --FPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEF 120
Query: 117 LARNGVKFGEAVWFKAGA-QIFSE 139
L + G+ W+ AG Q F++
Sbjct: 121 LTKIGI-LNTPSWYTAGEHQYFTD 143
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL++DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 85 PPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 143
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 144 LNTPSWYTAG 153
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS +G T S V+ + W F
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAEW-----------F 51
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L
Sbjct: 52 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-- 109
Query: 120 NGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 148
G W KA +G YLGNP
Sbjct: 110 -----GLGNWVKAQEWAALPDGQATYLGNP 134
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 37/42 (88%)
Query: 112 VFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
V PELLA NGV FGE VWFKAGAQIF +GGL+YLGNPSLIHA
Sbjct: 1 VTPELLAANGVSFGEPVWFKAGAQIFQDGGLNYLGNPSLIHA 42
>gi|1064830|dbj|BAA11310.1| chlorophyl a/b binding protein [Ipomoea nil]
Length = 68
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTA--SKSVSSGSPWYGLDRVKYL 57
MA STMALSSS F GKAV ++PS E++ +MRKTA K VSSGSPWYG DRVKYL
Sbjct: 1 MAASTMALSSSSFAGKAVKVSPSTPEITGNVNFTMRKTAGKPKPVSSGSPWYGPDRVKYL 60
Query: 58 GPF 60
GPF
Sbjct: 61 GPF 63
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + GV
Sbjct: 71 PPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV- 129
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 130 LNTPSWYSAG 139
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 74 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 132
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 133 LNTPSWYTAG 142
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 2 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRK-------TASKSVSSGSPWYGLDRV 54
A +T++ SS G V + G R+S++K T S +VS+ + D
Sbjct: 12 AVATISPSSQKTGSVVGATKA--SFLGGKRLSLKKFTAPAAGTRSFTVSAAA----ADPN 65
Query: 55 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
+ L PP +L G PGD+G+D GL +DPET + E++HCRWAMLGA G P
Sbjct: 66 RPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIP 125
Query: 115 ELLARNGVKFGEAVWFKAG 133
E L + G+ W+ AG
Sbjct: 126 EFLTKIGI-LNTPSWYTAG 143
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL
Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL--- 249
Query: 121 GVKFGEAVWFKAGAQI 136
G+ WF+AG +
Sbjct: 250 ----GKGAWFEAGDSV 261
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL NG
Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAW 438
Query: 124 FGEAVWFKAGAQIFS 138
F +W K F+
Sbjct: 439 F--QIWDKVDFNRFA 451
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 7/68 (10%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L
Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL------- 64
Query: 125 GEAVWFKA 132
G+ +W++A
Sbjct: 65 GKGIWYEA 72
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++HCRWAMLGA G PE L + G+
Sbjct: 85 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI- 143
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 144 LNTPSWYTAG 153
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV
Sbjct: 74 PPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV- 132
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 133 LNTPSWYTAGEQ 144
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET + E++HCRWAMLGA G PELL + G+
Sbjct: 29 PPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELLTKLGI- 87
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 88 LNTPSWYTAG 97
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 105 MLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
MLGA GC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HA
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 50
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET + E++HCRWAMLGA G PE L + G+
Sbjct: 76 PPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGI- 134
Query: 124 FGEAVWFKAG 133
W+ AG
Sbjct: 135 LNTPSWYTAG 144
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI- 131
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 132 LNTPSWYTAGEQEY 145
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI- 131
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 132 LNTPSWYTAGEQEY 145
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 61/125 (48%), Gaps = 30/125 (24%)
Query: 26 LSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLS 84
+SNG R+SM S W G+P P+YL G PGD+G+D GL+
Sbjct: 36 VSNGSRVSM----------SSEW-----------MPGQPRPAYLDGSSPGDFGFDPLGLA 74
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LD 143
PE FA+ +E E+IHCRWAML G + PE L G W A + GG
Sbjct: 75 EVPENFARYKESELIHCRWAMLAVPGVLIPEAL-------GLGNWVSAQQWAATPGGQAT 127
Query: 144 YLGNP 148
YLGNP
Sbjct: 128 YLGNP 132
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
+A ST A + G AV A G L + ++S AS SV + + +R + F
Sbjct: 14 IAPSTSATKAVSSGSAVKAAFFGKTLRSA-KVSAVSKASFSVRAQA----TERPLW---F 65
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G P +L G PGD+G+D GL ++PE + E++HCRWAMLGA G PELL +
Sbjct: 66 PGSTAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTK 125
Query: 120 NGVKFGEAVWFKAGAQIF 137
G+ W+ AG Q +
Sbjct: 126 IGI-LNTPSWYTAGEQTY 142
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
SP YG + L P PP +LTG GD G+D L PE+ A+ ELE++H RWAM
Sbjct: 171 SPLYG--EARPLLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAM 228
Query: 106 LGALGCVFPELLA-----RNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
L +G PE L+ G E VW+K GA + L+Y G
Sbjct: 229 LAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGG 274
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKN 93
A ++V G P Y +Y+G S EP YL G+ +PG +D GLS D + FA+
Sbjct: 290 AACQAVLMGGPEYA----RYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQ 345
Query: 94 RELEVIHCRWAMLGALGC 111
+ +E+ H R AM+ LGC
Sbjct: 346 KVIEIEHGRLAMVAMLGC 363
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 60 FSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
F G+ PP++L G P DYG+D L +DP+ A R+ E++HCRWAM+G G + P LL
Sbjct: 3 FPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLT 62
Query: 119 RNGVKFGEAVWFKAG 133
+ G VWF+AG
Sbjct: 63 KLGA-MNVPVWFEAG 76
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P +L G PGDYG+D L+A+P + E++HCRWAMLGA G PELL + G+
Sbjct: 73 EAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGI 132
Query: 123 KFGEAVWFKAG-AQIFSEGGLDYL 145
W+KAG A F++ G ++
Sbjct: 133 -LNTPSWYKAGDATYFADQGTLFI 155
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-L 59
Query: 125 GEAVWFKAGAQ 135
W+ AG Q
Sbjct: 60 NTPSWYTAGEQ 70
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G PGD+G+D GL +DPE + E++HCRWAMLGA G PE L + G+
Sbjct: 73 QPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAGI 132
Query: 123 KFGEAVWFKAGAQIF 137
W AG Q +
Sbjct: 133 -LNTPSWTVAGDQQY 146
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 14/127 (11%)
Query: 27 SNGGRISMRKTASKSVSSGS-PWYGLDRVKYL--------GPFSGEPPSYLTGEFPGDYG 77
SNG + +A ++ G+ YG R K+L GP S P+YLTGE PGD G
Sbjct: 1293 SNGSAALVVSSAVRNTGVGAADLYGTTRRKFLPDSLLASLGP-STVVPAYLTGELPGDVG 1351
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE--AVWFKAGAQ 135
WD + A + K RE E+IH RWAML A+G + PEL A+ GV FG + W+
Sbjct: 1352 WDPLQMGAQRD-LTKLRERELIHGRWAMLAAVGVLTPELTAKLGV-FGAPGSHWWNTAIN 1409
Query: 136 IFSEGGL 142
+EGGL
Sbjct: 1410 FPTEGGL 1416
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS +G T S V+ + W F
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAFATTSGRVTMSAEW-----------F 51
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L
Sbjct: 52 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-- 109
Query: 120 NGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 148
G W KA +G Y G P
Sbjct: 110 -----GLGNWVKAQEWAALPDGQATYFGVP 134
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P +L G PGDYG+D L+A+P + E++HCRWAMLGA G PELL + G+
Sbjct: 22 EAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGI 81
Query: 123 KFGEAVWFKAG-AQIFSEGGLDYL 145
W+KAG A F++ G ++
Sbjct: 82 -LNTPSWYKAGDATYFADQGTLFI 104
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 32 ISMRKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
I+ R ++ K+ G +P ++R +L + PP YL G GDYG+D GL DPE+
Sbjct: 24 ITRRISSVKAAGGGINPTVAVERATWLPGLN--PPPYLDGNLAGDYGFDPLGLGEDPESL 81
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E++H R+AMLG G +F +LL G++ VW++AGA F D+ +L
Sbjct: 82 KWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR-NLPVWYEAGAVKF-----DFASTKTL 135
Query: 151 I 151
I
Sbjct: 136 I 136
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 32 ISMRKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
I+ R ++ K+ G +P ++R +L + PP YL G GDYG+D GL DPE+
Sbjct: 24 ITRRISSVKAAGGGINPTVAVERATWLPGLN--PPPYLDGNLAGDYGFDPLGLGEDPESL 81
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E++H R+AMLG G +F +LL G++ VW++AGA F D+ +L
Sbjct: 82 KWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR-NLPVWYEAGAVKF-----DFASTKTL 135
Query: 151 I 151
I
Sbjct: 136 I 136
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 32 ISMRKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
I+ R ++ K+ G +P ++R +L + PP YL G GDYG+D GL DPE+
Sbjct: 16 ITRRISSVKAAGGGINPTVAVERATWLPGLN--PPPYLDGNLAGDYGFDPLGLGEDPESL 73
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E++H R+AMLG G +F +LL G++ VW++AGA F D+ +L
Sbjct: 74 KWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR-NLPVWYEAGAVKF-----DFASTKTL 127
Query: 151 I 151
I
Sbjct: 128 I 128
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS +G T S V+ + W F
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------F 51
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL PE F + +E EV HCRWAML G + PE L
Sbjct: 52 PGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEAL-- 109
Query: 120 NGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG Y G P
Sbjct: 110 -----GLGNWVKAQEWAAVPGGQATYFGVP 134
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA+S+ S S VG LAPS + S+ T S V+ + W
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPS-SRWSSRLPFCANATTSGRVTMSAEW-----------M 50
Query: 61 SGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 51 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL-- 108
Query: 120 NGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 109 -----GLGNWVKAQEWAAVPGGQATYLGNP 133
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 32 ISMRKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
I+ R ++ ++ G +P ++R +L +PP YL G+ GDYG+D GL DPE+
Sbjct: 24 ITRRISSVRAAGGGINPTVAVERATWLPGL--DPPPYLDGKLAGDYGFDPLGLGEDPESL 81
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E++H R+AMLG G +F +LL G++ VW++AGA F D+ +L
Sbjct: 82 RWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR-NLPVWYEAGAVKF-----DFASTKTL 135
Query: 151 I 151
I
Sbjct: 136 I 136
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 32 ISMRKTASKSVSSG-SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
I+ R ++ K+ G +P ++R +L + PP YL G GDYG+D GL DPE+
Sbjct: 24 ITRRISSVKAAGGGINPTVAVERATWLPGLN--PPPYLDGNLAGDYGFDPLGLGEDPESL 81
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 138
+ E++H R+AMLG G +F +LL G++ VW++AGA F
Sbjct: 82 KWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR-NLPVWYEAGAVKFD 128
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGLDRVKYLG 58
MATS + S S VG LAPS SN R+ + A+ S V+ + W
Sbjct: 1 MATSGLR-SCSAVGVPSLLAPS----SNRSRLPVCAYATTSGRVTMSAEW---------- 45
Query: 59 PFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 46 -MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL 104
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W +A GG YLGNP
Sbjct: 105 -------GLGNWVQAQEWAAEPGGQATYLGNP 129
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 73/152 (48%), Gaps = 27/152 (17%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISM--RKTASKSVSSGSPWYGLDRVKYLG 58
MATS + S S VG LAPS SN R+ + T S V+ + W
Sbjct: 1 MATSGLR-SCSAVGVPSLLAPS----SNRSRLPVCAYATTSGRVTMSAEW---------- 45
Query: 59 PFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 46 -MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL 104
Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W +A GG YLGNP
Sbjct: 105 -------GLGNWVQAQEWAAEPGGQATYLGNP 129
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 64/141 (45%), Gaps = 32/141 (22%)
Query: 10 SSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEP-PSYL 68
S F G A+ G SNG R+SM + W G+P P+YL
Sbjct: 25 SKFFGSAITT--PGAAFSNGSRVSM----------SAEW-----------LPGQPRPAYL 61
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128
G PGD+G+D GL P+ + +E E+IHCRWAML GC+ PE L G
Sbjct: 62 DGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEAL-------GLGN 114
Query: 129 WFKAGAQIFSEGG-LDYLGNP 148
W +A + GG YLG P
Sbjct: 115 WVEAQQWAATPGGQATYLGTP 135
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRIS---MRKTASKSVSSGSPWYGLDRVKYL 57
MA+S+ S S VG LAPS S GR++ T S V+ + W
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPS----SRSGRLAPFCANATTSGRVTMSAEW--------- 49
Query: 58 GPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE
Sbjct: 50 --MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEA 107
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
L G W KA GG YLG P
Sbjct: 108 L-------GLGNWVKAQEWAAVPGGQATYLGAP 133
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 71/145 (48%), Gaps = 30/145 (20%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLD----- 52
MA STMALSSS F GKAV L+PS +E+S GRI+MRKTA+ K SSGSPW +
Sbjct: 1 MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWSLVHAQSIL 60
Query: 53 -----RVKYLGPFSG-----------EPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
+V +G G P Y G F D GL+ DPE FA+ +
Sbjct: 61 AIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVK 114
Query: 97 EVIHCRWAMLGALGCVFPELLARNG 121
E+ + R AM G ++ G
Sbjct: 115 EIKNGRLAMFSMFGFFVQAIVTGKG 139
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRIS---MRKTASKSVSSGSPWYGLDRVKYL 57
MA+S+ S S VG LAPS S GR++ T S V+ + W
Sbjct: 3 MASSSGLRSCSAVGVPSLLAPS----SRSGRLAPFCANATTSGRVTMSAEW--------- 49
Query: 58 GPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE
Sbjct: 50 --MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEA 107
Query: 117 LARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
L G W KA GG YLG P
Sbjct: 108 L-------GLGNWVKAQEWAAVPGGQATYLGAP 133
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 48 WYGLDRVKYLGPFSGEP---PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR KYL +P P+Y+ GE GDYG+D GL + K R EV+H RWA
Sbjct: 58 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 116
Query: 105 MLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFS 138
MLG +G + PE L NG AVW+ +GA +
Sbjct: 117 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLD 151
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG-VK 123
PSYL G GD +D LS E +N ELE++H RWAML +G PE+L+R+G ++
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 124 FGEAVWFKAGAQIFSEGGLDYLG 146
E +W+K G ++ ++YLG
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLG 307
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 40 KSVSSGSPWYGLDRVKYLGPFSGEPP-SYLTGE--FPGDYGWDTAGLSADPETFAKNREL 96
++V G P Y +Y+G S EP YL G+ +PG +D LSAD E + R
Sbjct: 326 QAVLMGGPEYA----RYVGIESLEPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVS 381
Query: 97 EVIHCRWAMLGALGCVFPELLARNG 121
EV H R AM+ LG + R G
Sbjct: 382 EVKHGRLAMIAMLGVFAQAFVTREG 406
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 32 ISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETF 90
+ +R A+K VSS DR + F G PP +L G PGD+G+D GL +DPE+
Sbjct: 35 VKVRVNATKGVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESL 91
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E+IH RWAML A G + PE L R G WF AG + +Y +P+
Sbjct: 92 KWFAQAELIHGRWAMLAAAGILIPEWLERLGF-IDNFNWFDAGTR-------EYFADPTT 143
Query: 151 I 151
+
Sbjct: 144 L 144
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 32 ISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETF 90
+ +R A+K VSS DR + F G PP +L G PGD+G+D GL +DPE+
Sbjct: 35 VKVRVNATKGVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESL 91
Query: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
+ E+IH RWAML A G + PE L R G WF AG + +Y +P+
Sbjct: 92 KWFAQAELIHGRWAMLAAAGILIPEWLERLGF-IDNFNWFDAGTR-------EYFADPTT 143
Query: 151 I 151
+
Sbjct: 144 L 144
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP+YL G PGD+G+D GL DPE+ + E++H R+AMLG LG + +LL GV
Sbjct: 66 DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGV 125
Query: 123 KFGEAVWFKAGA 134
+WF+AGA
Sbjct: 126 N-SIPIWFEAGA 136
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/33 (96%), Positives = 33/33 (100%)
Query: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
GVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHA
Sbjct: 1 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA 33
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 48 WYGLDRVKYLGPFSGEP---PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR KYL +P P+Y+ GE GDYG+D GL + K R EV+H RWA
Sbjct: 65 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 123
Query: 105 MLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFS 138
MLG +G + PE L NG AVW+ +GA +
Sbjct: 124 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLD 158
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 67/134 (50%), Gaps = 30/134 (22%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLD----- 52
MA STMALSSS F GK V LAPS +E++ GRI+MRKTA+ K SSGSPW +
Sbjct: 1 MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMRKTAAKPKPASSGSPWSLVHAQSIL 60
Query: 53 -----RVKYLGPFSG-----------EPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
+V +G G P Y G F D GL+ DPE FA+ +
Sbjct: 61 AIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVK 114
Query: 97 EVIHCRWAMLGALG 110
E+ + R AM G
Sbjct: 115 EIKNGRLAMFSMFG 128
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 28 NGGRISMR---KTASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGL 83
GGR+S R A K VSS DR + F G PP +L G PGD+G+D GL
Sbjct: 36 TGGRMSERLVVARAGKEVSSVCEPLPPDRPLW---FPGSAPPEWLDGSLPGDFGFDPLGL 92
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
+DP+T + E+IH RWAML G + PE L R G W++AG++
Sbjct: 93 GSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGF-IENFSWYEAGSR 143
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL PE + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAAVPGGQATYLGNP 132
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPE 88
GR+ R A+K VSS DR + F G PP +L G PGD+G+D GL +DPE
Sbjct: 33 GRV--RLNATKGVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 87
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
+ E++H RWAML G + PE L R G W+ AGAQ F
Sbjct: 88 LLRWFAQAELMHSRWAMLAVAGILIPECLERLGF-IENFSWYDAGAQEF 135
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 109
YL S + +YL G PGD+G+D G+S DPE F + L EVIH RWAMLG
Sbjct: 86 YLMGVSDQNMTYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVA 144
Query: 110 GCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLI 151
G V PE+L G+ + VWFK+GA I +G DY +P+ I
Sbjct: 145 GVVAPEVLGGMGIIPADTGLVWFKSGA-IPPQGTFDYWADPTTI 187
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P++L G PGD+G+D GL+ DP + A+ RE EV++ RWAMLG G + PEL+
Sbjct: 49 PAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAPELV------- 101
Query: 125 GEAVWFKAGAQIFSEGGLDYLGN 147
G+ W A + G YLGN
Sbjct: 102 GQGTWLSAQDWAVTGGKPTYLGN 124
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL PE + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 30 GRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPE 88
GR+ R A+K VSS DR + F G PP +L G PGD+G+D GL +DPE
Sbjct: 3 GRV--RLNATKGVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 57
Query: 89 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
+ E++H RWAML G + PE L R G W+ AGAQ F
Sbjct: 58 LLRWFAQAELMHSRWAMLAVAGILIPECLERLGF-IENFSWYDAGAQEF 105
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P ++L G PGDYG+D LSADPE + E+ H RWAMLG GCV PELL + GV
Sbjct: 45 PAAHLDGSLPGDYGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGV 103
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 27 SNGGRISMRK----TASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 81
S GGR+ + A K VSS DR + F G PP +L G PGD+G+D
Sbjct: 35 STGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPL 91
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
GL +DP+T + E+IH RWAML G + PE L R G W+ AG++
Sbjct: 92 GLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGF-IENFSWYDAGSR 144
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 65/132 (49%), Gaps = 28/132 (21%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLD------- 52
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPW +
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWSLVHAQSILAI 60
Query: 53 ---RVKYLGPFSG-----------EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
+V +G G P Y G F D GL+ DPE FA+ + E+
Sbjct: 61 WACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVKEI 114
Query: 99 IHCRWAMLGALG 110
+ R AM G
Sbjct: 115 KNGRLAMFSMFG 126
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 27 SNGGRISMRK----TASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 81
S GGR+ + A K VSS DR + F G PP +L G PGD+G+D
Sbjct: 35 STGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPL 91
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
GL +DP+T + E+IH RWAML G + PE L R G W+ AG++
Sbjct: 92 GLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGF-IENFSWYDAGSR 144
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAMLG G + PELL + G
Sbjct: 63 PPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGY- 121
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W++AG Q +Y +P+ +
Sbjct: 122 VENYSWYEAGTQ-------EYFADPTTL 142
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 27 SNGGRISMRK----TASKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 81
S GGR+ + A K VSS DR + F G PP +L G PGD+G+D
Sbjct: 35 STGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPL 91
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
GL +DP+T + E+IH RWAML G + PE L R G W+ AG++
Sbjct: 92 GLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGF-IENFSWYDAGSR 144
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 114
S + SYL G PGDYG+D GLS DPE F + L EVIH RWAMLG G V P
Sbjct: 64 SDQSLSYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAP 122
Query: 115 ELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLI 151
E+L G+ E VW+KAG I ++G DY NP I
Sbjct: 123 EVLGGLGIIPQETGLVWYKAG-MIPAQGTYDYWANPFTI 160
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPE-------TFAKNRELEVIHCRWAMLGALGCVF 113
S + SYLTG P DYG+D GL DPE + A + EVIH RWAMLGA GC+
Sbjct: 29 SDQSLSYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIA 87
Query: 114 PELLARNGV---KFGEAVWFKAGA 134
PE+LA GV E +WFK+G
Sbjct: 88 PEILATAGVIPQTPDEVIWFKSGV 111
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G PGD+G+D GL +PE + E++HCR+AM G G +F +LL +G
Sbjct: 70 DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG- 128
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 129 NSDLPVWFEAGAAKFD 144
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G PGD+G+D GL +PE + E++HCR+AM G G +F +LL +G
Sbjct: 70 DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG- 128
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 129 NSDLPVWFEAGAAKFD 144
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G PGD+G+D GL +PE + E++HCR+AM G G +F +LL +G
Sbjct: 116 DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG- 174
Query: 123 KFGEAVWFKAGAQIF 137
VWF+AGA F
Sbjct: 175 NSDLPVWFEAGAAKF 189
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GL +DPE + E++HCRWAMLGA G PE L + G+
Sbjct: 12 PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAGI-L 70
Query: 125 GEAVWFKAGAQIF 137
W AG Q +
Sbjct: 71 NTPSWNVAGDQQY 83
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 1 MATSTMALSSSFVGKAVNL---APSGNELSN------GGRISMRKTASKSVSSGSPWYGL 51
MA T++++S+F A + AP +L + G + A K+V P
Sbjct: 1 MAAMTVSMTSAFTRGAARVTASAPKARKLRSFVVRAEGEEAPAAEEAPKAVVKAQPRSKD 60
Query: 52 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAM 105
D YL S + +YL G PGD+G+D G+S DPE F + L EVIH RWAM
Sbjct: 61 DL--YLMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAM 117
Query: 106 LGALGCVFPELLARNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
LG G V PE+L + G+ + VWF +GA I +G DY NP I
Sbjct: 118 LGVAGIVAPEILGQAGLIPESTGLVWFTSGA-IPPQGTFDYWANPMTI 164
>gi|157965825|gb|ABW06949.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 342
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 22 SGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
S N L+ GG ++M TA + W+ G PS+LTG+ GD G+D A
Sbjct: 141 SANLLTGGGSLAMFSTAGQKTDRRPLWFP----------GGYAPSWLTGQHFGDRGFDPA 190
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
GL+ADP+ F + R EV H R AML +G V P++ G+ W++A
Sbjct: 191 GLAADPKVFERMRVSEVYHGRLAMLAIVGAVVPDIQ-------GKGAWYEA 234
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 141
GL+ DP+ + + R EV H R AMLG +GCV PEL F + WF +S+
Sbjct: 2 GLAKDPKVYQRMRISEVFHGRLAMLGIVGCVAPELF------FSKGAWFD-----YSDYD 50
Query: 142 LDYLG 146
L+ LG
Sbjct: 51 LNRLG 55
>gi|126250|sp|P08975.1|LH15_EUGGR RecName: Full=Light-harvesting complex I LH35 proteins; Contains:
RecName: Full=LH35 protein 1; Contains: RecName:
Full=LH35 protein 2; Flags: Precursor
gi|18418|emb|CAA31337.1| unnamed protein product [Euglena gracilis]
Length = 331
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP++LTGE+P D G+D ++ADP +A+ R EV H R +ML +G + PELL
Sbjct: 167 QPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL----- 221
Query: 123 KFGEAVWFKAGAQI 136
G+ WF+ G +
Sbjct: 222 --GKGAWFEVGNSV 233
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 138
P + + R EV + R AML +GCV+PELL NGV F VW K F+
Sbjct: 1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRFA 49
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + L E+IH RWAMLG G V PE+L
Sbjct: 60 SYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 120 NGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLI 151
G+ E VWFKAG I ++G DY +P I
Sbjct: 119 MGIIPQETGLVWFKAG-MIPAQGTYDYWASPFTI 151
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP+YL G PGDYG+D GL PE + E++HCR+AM G G + +L+ +G+
Sbjct: 58 DPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGI 117
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 118 G-NLPVWFEAGATKFD 132
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 51 GEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL--- 107
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ----GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G P D+G+D GL ++PE + E++H RWAMLGA G PE L + G+
Sbjct: 72 PPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGI- 130
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 131 LNTPFWYTAGEQ 142
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G P D+G+D GL ++PE + E++H RWAMLGA G PE L + G+
Sbjct: 72 PPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGI- 130
Query: 124 FGEAVWFKAGAQ 135
W+ AG Q
Sbjct: 131 LNTPFWYTAGEQ 142
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL ++PE + E++H RWAML A G + P+LLAR G
Sbjct: 74 PPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFI 133
Query: 124 FGEAVWFKAGAQIF 137
WF AG++ +
Sbjct: 134 DAGFSWFDAGSREY 147
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL ++PE + E++H RWAML A G + P+LLAR G
Sbjct: 74 PPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFI 133
Query: 124 FGEAVWFKAGAQIF 137
WF AG++ +
Sbjct: 134 DAGFSWFDAGSREY 147
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G PGD+G+D GL DP + + E++HCR+AM G G +F +LL +G
Sbjct: 67 DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLLRVSG- 125
Query: 123 KFGEAVWFKAGAQIF 137
VWF+AGA F
Sbjct: 126 NSDLPVWFEAGAAKF 140
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP+YL G GDYG+D GL DPE+ + E++H R+AMLG G + +LL G+
Sbjct: 12 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 71
Query: 123 KFGEAVWFKAGA 134
VWF+AGA
Sbjct: 72 S-KIPVWFEAGA 82
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL--- 108
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLG P
Sbjct: 109 ----GLGNWVKAQEWAAIPGGQATYLGQP 133
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 32/32 (100%)
Query: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+KFGEAVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 1 IKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHA 32
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 51 GEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL--- 107
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ----GYGNWVKAQEWAALPGGQATYLGNP 132
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 14/93 (15%)
Query: 66 SYLTGEFPGDYGWDTAGLSA--------DPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
SYL G PGD+G+D GL DP+ A + EVIHCR+AMLG G V PE+L
Sbjct: 87 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAGMVAPEIL 143
Query: 118 ARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNP 148
+ G+ E VWFK G I SEG DY +P
Sbjct: 144 GKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP 175
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 54 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 110
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 111 ----GLGNWVKAQEWAAVPGGQATYLGNP 135
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL ++PE + E++H RWAML A G + P+LLAR G
Sbjct: 35 PPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFI 94
Query: 124 FGEAVWFKAGAQIF 137
WF AG++ +
Sbjct: 95 DAGFSWFDAGSREY 108
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSG-EPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
R A+K VS+ G DR + F G PP +L G PGD+G+D GL ++PET
Sbjct: 49 RAGAAKGVSAVCEPLGPDRPVW---FPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWF 105
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
+ E++H RWAML G + PE+L + G E W+ AG + +
Sbjct: 106 AQAELMHSRWAMLAVAGILIPEILQKWGF-MEEFSWYTAGEREY 148
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSN-GGRISM--RKTASKSVSSGSPWYGLDRVKYLGPF 60
+T AL+S V V P+ E G R++ R ASK+ DR +
Sbjct: 2 ATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKAEKSDRQLFFSDK 61
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSA--------DPETFAKNRELEVIHCRWAMLGALGCV 112
+ + SYL G PGD+G+D GL DP+ A + EVIHCR+AMLG G V
Sbjct: 62 AAQ--SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAGMV 116
Query: 113 FPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNP 148
PE+L + G+ E VWFK G I SEG DY +P
Sbjct: 117 APEILGKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP 153
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP+YL G GDYG+D GL DPE+ + E++H R+AMLG G + +LL G+
Sbjct: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
Query: 123 KFGEAVWFKAGA 134
VWF+AGA
Sbjct: 125 S-KIPVWFEAGA 135
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 63/134 (47%), Gaps = 22/134 (16%)
Query: 19 LAPSGNELSNGGRISM--RKTASKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGD 75
LAPS + S GR+ T S V+ + W G+P P++L G PGD
Sbjct: 22 LAPSTSSSSRSGRLPFCAHATTSGRVTMSAEW-----------MPGQPRPAHLDGSSPGD 70
Query: 76 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
+G+D GL+ PE F + +E EV HCRWAML G + PE L G W KA
Sbjct: 71 FGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL-------GLGNWVKAQEW 123
Query: 136 IFSEGG-LDYLGNP 148
GG YLG P
Sbjct: 124 AAVPGGQATYLGAP 137
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGI-I 114
Query: 125 GEAVWFKAGAQIF 137
+W+ AG +
Sbjct: 115 NAPLWYDAGKSTY 127
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P PSYL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 108
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 109 ----GLGNWVKAQEWAALPGGQATYLGNP 133
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 59
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 60 ------GYGNWVKAQEWAALPGGQATYLGNP 84
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P PSYL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL--- 108
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLG P
Sbjct: 109 ----GLGNWVKAQEWAAIPGGQATYLGQP 133
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PELL + G
Sbjct: 65 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEKIGY- 123
Query: 124 FGEAVWFKAGAQ 135
W+ AGA+
Sbjct: 124 IENFSWYDAGAR 135
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D GL PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 109
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLG P
Sbjct: 110 ----GLGNWVKAQEWAAVPGGQATYLGQP 134
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFP 73
GKA+ L P N+ S R S SSG P DR + S + SYL G P
Sbjct: 31 GKALILPPYFNQSSESSRTSF--AVRSQASSGKPVKQGDRQLWFA--SKQSLSYLDGSLP 86
Query: 74 GDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA 127
GDYG+D GL DPE F + L E+I+ R+AMLGA+G + PE+L + G+ E
Sbjct: 87 GDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLGLIPQET 145
Query: 128 V--WFKAGAQIFSEGGLDYLGNP 148
WF+ G I G DY +P
Sbjct: 146 ALPWFRTGV-IPPAGTYDYWADP 167
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L A PE + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPPYLDGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 108
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 109 ----GLGNWVKAQEWAAVPGGQATYLGNP 133
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PELL R G
Sbjct: 65 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLERIGY- 123
Query: 124 FGEAVWFKAGAQ 135
W+ AG +
Sbjct: 124 IENFSWYDAGTR 135
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PELL R G
Sbjct: 65 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLERIGY- 123
Query: 124 FGEAVWFKAGAQ 135
W+ AG +
Sbjct: 124 IENFSWYDAGTR 135
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 109
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 110 ----GLGNWVKAQEWAAVPGGQATYLGNP 134
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E PSYL GE GDYGWD GL A PE R+ E++H RWAML G + E++ + GV
Sbjct: 52 EAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV-KPGV 110
Query: 123 KFGEA 127
F A
Sbjct: 111 FFYNA 115
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G PGDYG+D GL +P + E++HCR+AM G G + +L+ +G+
Sbjct: 60 DPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGI 119
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 120 S-NLPVWFEAGATKFD 134
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G GD+G+D GL+ DP + + E++HCR+AMLG G + +LL G+
Sbjct: 62 DPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGI 121
Query: 123 KFGEAVWFKAGA 134
VWF+AGA
Sbjct: 122 S-KIPVWFEAGA 132
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 32 ISMRKTASKS--------VSSGSPWYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDT 80
++++KT K+ + S WYG R YL + + PSYL G+ GDYG+D
Sbjct: 43 VTVKKTVKKAAPVKTTVKTADLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDP 102
Query: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 140
GL AD + R EVIH RWAML G V PE L G G+ W + G ++F EG
Sbjct: 103 LGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAG---GD--WRETG-KVFLEG 155
Query: 141 GLDYLGNPSL 150
G L
Sbjct: 156 STGRFGPAEL 165
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAMLG G + PE+L + G
Sbjct: 71 PPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGY- 129
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W+ AG+ ++Y +P+ +
Sbjct: 130 VKNFSWYNAGS-------VEYFADPTTL 150
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAMLG G + PE+L + G
Sbjct: 71 PPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGY- 129
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W+ AG+ ++Y +P+ +
Sbjct: 130 VKNFSWYNAGS-------VEYFADPTTL 150
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML A G + PE+L + G
Sbjct: 68 PPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEVLEKWGF- 126
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNP 148
+ W AGA+ DY +P
Sbjct: 127 MEDYSWIDAGAR-------DYFADP 144
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG DR YL G + + PSYL G GDYG+D GL AD + R EVIH RWA
Sbjct: 102 WYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWA 160
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD---YLGNPSLIHA 153
ML G V PE L G VW + G ++F +G +L NP + A
Sbjct: 161 MLAIPGVVIPEALGLPG-----GVWTETG-KVFLDGETGRPFFLENPIVFAA 206
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 109
Y+ S + +YL G PGD+G+D G+S DPE F + L EVIH RWAMLG
Sbjct: 70 YMMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVA 128
Query: 110 GCVFPELLARNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
G V PE+L GV + VWF +GA I +G DY NP I
Sbjct: 129 GIVAPEILGGMGVIPESTGLVWFTSGA-IPPQGTFDYWANPMTI 171
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 51 GQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 107
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ----GLGNWVKAQEWAALPGGQATYLGNP 132
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 41/159 (25%)
Query: 4 STMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGE 63
S M S +F+G+ + + + ++ R+ T + P + F G
Sbjct: 24 SPMGTSKAFLGRKLKV---NSNIAAPVRVRSTTTVCAAAEPDRPLW----------FPGS 70
Query: 64 -PPSYLTGEFPGDYGWDTAGL--------------------------SADPETFAKNREL 96
PP +L G PGD+G+D GL ++DPE+ N +
Sbjct: 71 TPPPWLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQA 130
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
E++HCRWAMLGA G PE L + G+ W+ AG Q
Sbjct: 131 ELVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSWYTAGEQ 168
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL------- 106
Query: 125 GEAVWFKAGAQIFSEGG-LDYLGNP 148
G W A + GG YLGNP
Sbjct: 107 GYGNWVSAQKWAATPGGQATYLGNP 131
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P++L G PGD+G+D GL+ PE F + +E EV HCRWAML G + PE L
Sbjct: 3 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL--- 59
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLG P
Sbjct: 60 ----GLGNWVKAQEWAAVPGGQATYLGAP 84
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
F G P P YL GE GDYG+D G +P + E++HCRWAMLGA G + PE+
Sbjct: 34 FPGNPAPEYLKGELAGDYGFDPLGFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGN 93
Query: 119 RNGVK 123
+ G++
Sbjct: 94 KTGMQ 98
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 6 MALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF----- 60
M + +SF G A+ A S + + + +R S+ GS ++RV G
Sbjct: 1 MQVVTSFSGVALRPAQSVSRPARRSSVVVRSEGSE----GSELAKVERVAKAGGLYQNFT 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 114
S + YL G PGD+G+D GL DPE F L EVIHCRWAMLG G + P
Sbjct: 57 SSQALGYLDGTLPGDFGFDPLGL-CDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAP 115
Query: 115 ELLARNGVKFG---EAVWFKAG 133
E+LA G EAVWF++G
Sbjct: 116 EVLATIGAIPASPEEAVWFRSG 137
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 42 VSSGSP--------WYGLDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 90
V+S SP WYG DR +L E P YL GE PGDYG+D GLS PE F
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 91 AKNRELEVIHCRWAML 106
+K + E+IH RW +L
Sbjct: 111 SKYQAYELIHARWVVL 126
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 51 GQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 107
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ----GLGNWVKAQEWAALPGGQATYLGNP 132
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 72 DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGL 131
Query: 123 KFGEAVWFKAGAQIFS 138
VW++AGA F
Sbjct: 132 S-NLPVWYEAGATKFQ 146
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL------- 63
Query: 125 GEAVWFKAGAQIFSEGG-LDYLGNP 148
G W A + GG YLGNP
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNP 88
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI-I 121
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 122 NAPQWYDAGKAEYFASSSTLFVIEFILFH 150
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL GE GDYGWD GL ADP R+ E++H RWAMLG G + E++ + V F
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVV-KPDVYF 100
Query: 125 GEA 127
EA
Sbjct: 101 YEA 103
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 49 LPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA + GG YLG P
Sbjct: 108 ------GLGNWVKAQEWAAAPGGQATYLGQP 132
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 48 MPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 106
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA + GG YLG P
Sbjct: 107 ------GLGNWVKAQEWAATPGGQATYLGQP 131
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P YL G GDYG+D GL DPE+ + E++H R+AMLG G +F +LL G+
Sbjct: 68 DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGI 127
Query: 123 KFGEAVWFKAGA 134
+ VW++AGA
Sbjct: 128 R-KLPVWYEAGA 138
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI-I 118
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFH 147
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PPSYL G P DYG+D GL +P+ A+ +E E+IH RWAMLG G E++ G+
Sbjct: 45 PPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSGAAGAEII--TGIN 102
Query: 124 FGEA 127
+ EA
Sbjct: 103 WVEA 106
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P++L G P DYG+D L ADPE + E++HCRWAMLG G V PELL + G+
Sbjct: 52 PAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGM 109
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G V PE+L G+
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI-I 121
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 122 NVPKWYDAGKAEYFASSSTLFVIEFILFH 150
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W +A GG YLGNP
Sbjct: 108 ------GLGNWVQAQEWAAIPGGQATYLGNP 132
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G GD+G+D GL DP++ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGI 124
Query: 123 KFGEAVWFKAGAQIFS 138
+ VW++AGA F
Sbjct: 125 R-KLPVWYEAGAVKFE 139
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G GD+G+D GL DP++ + E++HCR+AMLG G + +LL G+
Sbjct: 58 DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGI 117
Query: 123 KFGEAVWFKAGA 134
VW+ AGA
Sbjct: 118 S-ELPVWYNAGA 128
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL------- 63
Query: 125 GEAVWFKAGAQIFSEGGL-DYLGNP 148
G W A + GG YLGNP
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNP 88
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET--------FAKNREL---EVIHCRWAMLGALGCVFP 114
YL G PGDYG+D GL DP F R L EVIH RWAMLGA GC+ P
Sbjct: 68 KYLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAP 126
Query: 115 ELLARNGVKFGEAV--WFKAG 133
E+L + GV E WF+ G
Sbjct: 127 EILGKAGVIPAETAVDWFRTG 147
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 35 RKTASKSVSSGSPWYGLDRVK--YLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFA 91
R+ + K ++S SP + ++ K +L G P PSYL G PGD G+D GL+ DPE
Sbjct: 32 RELSIKPMASSSPSFKVEAKKGEWL---PGLPSPSYLNGSLPGDNGFDPLGLAEDPENLR 88
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSL 150
+ E+++ RWAMLG G + PE+ + G+ W+ AG A+ F+ ++ L
Sbjct: 89 WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFIL 147
Query: 151 IH 152
H
Sbjct: 148 FH 149
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PE+L + G
Sbjct: 68 PPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGF- 126
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNP 148
+ W AGA+ DY +P
Sbjct: 127 MEDYSWIDAGAR-------DYFADP 144
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 35 RKTASKSVSSGSPWYGLDRVK--YLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFA 91
R+ + K ++S SP + ++ K +L G P PSYL G PGD G+D GL+ DPE
Sbjct: 32 RELSIKPMASSSPSFKVEAKKGEWL---PGLPSPSYLNGSLPGDNGFDPLGLAEDPENLR 88
Query: 92 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSL 150
+ E+++ RWAMLG G + PE+ + G+ W+ AG A+ F+ ++ L
Sbjct: 89 WFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFIL 147
Query: 151 IH 152
H
Sbjct: 148 FH 149
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
F G+P P++L G PGD+G+D GL PE F + +E EV HCRWAML G + PE L
Sbjct: 19 FPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEAL 77
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L GE PGD+G+D GL A+P++ RE E++H RWAM G + E++ +
Sbjct: 37 PPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAVAGILVQEIVRPD--- 93
Query: 124 FGEAVWFKAGAQIFSEGG 141
W+ AG+Q+ S G
Sbjct: 94 ---VFWYSAGSQVESPLG 108
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET + E++H RWAML G + PE G+
Sbjct: 69 PPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGL- 127
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W+ AG++ +Y +P+ +
Sbjct: 128 IQNFSWYDAGSR-------EYFADPTTL 148
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PG++G+D GL +DPE + E++H RWAMLG G + PE+L + G
Sbjct: 71 PPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGY- 129
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W+ AG+ ++Y +P+ +
Sbjct: 130 VKNFSWYNAGS-------VEYFADPTTL 150
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET-----FAKNREL---EVIHCRWAMLGALGCVFPELL 117
SYL G PGD+G+D GL DP + F R L E++H RWAMLGA GC+ PE L
Sbjct: 12 SYLDGTLPGDFGFDPLGLF-DPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYL 70
Query: 118 ARNGV--KFGEAVWFKAGAQIFSEGGLDY 144
A V K +WFK G + G DY
Sbjct: 71 AHEKVIPKATGLLWFKTGFLPQASAGFDY 99
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPET + E++H RWAML G + PE G+
Sbjct: 69 PPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGL- 127
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
W+ AG++ +Y +P+ +
Sbjct: 128 IQNFSWYDAGSR-------EYFADPTTL 148
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 6 MPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL- 64
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W +A GG YLGNP
Sbjct: 65 ------GLGNWVQAQEWAAIPGGQATYLGNP 89
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G PGD+G+D GL +P + E++HCR+AM G G + +L+ +G+
Sbjct: 62 DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGI 121
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 122 N-NLPVWFEAGATKFD 136
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PE+L + G
Sbjct: 33 PPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGF- 91
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNP 148
+ W AGA+ DY +P
Sbjct: 92 MEDYSWIDAGAR-------DYFADP 109
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 49 YGLDRVKYLGPF------SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 102
YG R K+L G P YLTGE PGD GWD + A + K RE E+IH R
Sbjct: 1240 YGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIM-KLRERELIHGR 1298
Query: 103 WAMLGALGCVFPELLAR 119
WAML A+G + PE AR
Sbjct: 1299 WAMLAAIGVLVPESTAR 1315
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 63 EPPSYLTGEFPGDYGWDTAGL------SADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
+ P +L G PGD+G+D GL +DPET + E++HCRWAMLGA G PE
Sbjct: 72 QAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIFIPEA 131
Query: 117 LARNGV 122
L + G+
Sbjct: 132 LTKMGI 137
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 43 SSGSPWYGLDRVKYLGP----FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
S S WYG +R YL + + PSY+ G GDYG+D L D A+ R EV
Sbjct: 103 SDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEV 161
Query: 99 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL---DYLGNPSLIHA 153
H RWAML G V PE L GV G W + G ++F +G + LGNP L A
Sbjct: 162 QHARWAMLAVPGVVIPEAL---GVPGGN--WTETG-KVFLDGEAGRPEILGNPYLFTA 213
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEAL--- 108
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLG P
Sbjct: 109 ----GLGNWVKAQEWAAIPGGQATYLGQP 133
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G+ PGD G+D GL+ DPE + E+++ RWAMLG G + PELL + G+
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 NAPEWYDAGKSTY 127
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
Query: 34 MRKTASKSVSSG--------SPWYGLDRVKYLGP----FSGEPPSYLTGEFPGDYGWDTA 81
+RK A SSG S WYG +R YL + + PSYL G GDYG+D
Sbjct: 62 VRKAAPVRKSSGKRGDGVDLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPL 121
Query: 82 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 141
L D + + R EVIH RWAML G V PE L G VW + G ++F +G
Sbjct: 122 QLGKDGKV-EQYRAAEVIHARWAMLAIPGIVIPEALGIPG-----GVWTETG-KVFLDGE 174
Query: 142 L---DYLGNPSLIHA 153
+ L NP L A
Sbjct: 175 AGRPEILQNPYLFAA 189
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE + E++H RWAML G + PE L G
Sbjct: 101 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPEWLESLGF- 159
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
WF AGA+ +Y +P+ +
Sbjct: 160 IENYNWFDAGAR-------EYFADPTTL 180
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNREL--------EVIHCRWAMLGALGCVFPELL 117
SYLTG PGD+GWD L+ + N + EVIH RWAMLGA G + PE+L
Sbjct: 127 SYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVL 186
Query: 118 ARNGVKFGEA--VWFKAG 133
+ GV E WF+AG
Sbjct: 187 GKAGVIPKETGLTWFQAG 204
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P++L G PGD+G+D GL PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL 109
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L GE PGD+G+D GL A+ E+ +E E++HCRWAM G + E++ +
Sbjct: 38 PPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRWAMAAVAGILVQEIVRPD--- 94
Query: 124 FGEAVWFKAGAQIFSEGG 141
W+ AG ++ S G
Sbjct: 95 ---VFWYNAGKEVESPLG 109
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL GE GDYGWD GL ADP R+ E+ H RWAMLG G + E++ + V F
Sbjct: 30 PEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV-KPDVYF 88
Query: 125 GEA 127
EA
Sbjct: 89 YEA 91
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 114
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 115 NAPQWYDAG 123
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
+ TA++ V+ + DR +L + PP++L G PGDYG+D GL+ DP+ A
Sbjct: 25 KATAARDVTVRAA----DRTLWLP--NTVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFV 78
Query: 95 ELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 138
E E + RWAM G G +F + L G A WF GA++ S
Sbjct: 79 EAERTNGRWAMAGVAGILFTDAL-----HIGSAPWFSIGAELES 117
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 114
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 115 NAPQWYDAG 123
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 34 MRKTASKS-VSSGSPWYGLDRVKYLGPFSGEP------------------PSYLTGEFPG 74
R ASKS SGSP L+R P S P P+YL G PG
Sbjct: 13 FRPCASKSRFLSGSP-SKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPSPAYLNGSLPG 71
Query: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA 134
D G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG
Sbjct: 72 DNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPKWYDAGK 130
Query: 135 Q 135
+
Sbjct: 131 E 131
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P +L G PGD+G+D LSADPE + E+ H RWAMLG G V PELL + GV
Sbjct: 48 PAPHLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGV 106
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 64 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 122
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 123 NAPQWYDAG 131
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD G+D GL+ DPE+ + E+++ RWAMLG G + PE+L G+
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGL-I 120
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 121 NVPKWYDAG 129
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 34 MRKTASKSVSSGSP---------WYGLDRVKYLGPFSGEP----PSYLTGEFPGDYGWDT 80
++K A SSG P WYG +R YL +P PSY+ G GDYG+D
Sbjct: 59 VKKAAPVKKSSGKPSQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDP 118
Query: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 140
L AD + R EVIH RWAML G V PE L G VW + G ++F +G
Sbjct: 119 LKLGADGK-INDYRAAEVIHARWAMLAIPGIVIPEALGIPG-----GVWTETG-KVFLDG 171
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++LTG P DYG+D GL +P A+ +E E+IH RWAMLG G E + GV
Sbjct: 46 PPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAI--TGVT 103
Query: 124 FGEA 127
+ EA
Sbjct: 104 WIEA 107
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 DAPQWYDAGKATY 127
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 DAPQWYDAGKATY 127
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 114
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 115 NAPQWYDAG 123
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLG P
Sbjct: 108 ------GLGNWVKAQEWAAIPGGQATYLGQP 132
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET----FAKNREL---EVIHCRWAMLGALGCVFPELLA 118
SYL G PGD G+D GL DP F R L EV+H RWAMLGA GC+ PE LA
Sbjct: 19 SYLDGTLPGDMGFDPLGLF-DPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGCLAPEYLA 77
Query: 119 RNGV--KFGEAVWFKAGAQIFSEGGLDY 144
V K +WFK G G DY
Sbjct: 78 HEKVIPKATGLLWFKTGFLPPVSAGFDY 105
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD G+D GL+ DPE+ + E+++ RWAMLG G + PE+L G+
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGL-I 113
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 114 NVPKWYDAG 122
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 DAPQWYDAGKATY 127
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 DAPQWYDAGKATY 127
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGL-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 DAPQWYDAGKATY 127
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+L G+
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGI-I 60
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFH 89
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+L G+
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGI-I 60
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFH 89
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+L G+
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGI-I 60
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFH 89
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL G+ GDYGWD GL ADP R+ E+ H RWAMLG G + E++ + V F
Sbjct: 42 PEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV-KPDVYF 100
Query: 125 GEA 127
EA
Sbjct: 101 YEA 103
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP +L G PGD+G+D GL +P + E++HCR+AM G G + + + +G+
Sbjct: 62 DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGI 121
Query: 123 KFGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 122 N-NLPVWFEAGATKFD 136
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+L G+
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGI-I 60
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFH 89
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGI-I 121
Query: 125 GEAVWFKAGAQ 135
W+ AG +
Sbjct: 122 NVPKWYDAGKE 132
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL G PGD G+D GL+ DPE + E+ + RWAMLG G + PE+ + G+
Sbjct: 62 PDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGI-I 120
Query: 125 GEAVWFKAGAQ 135
W+ AG Q
Sbjct: 121 NAPQWYDAGKQ 131
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
G+P P YL G PGD+G+D L PE + +E E+IHC WAML G + PE L
Sbjct: 47 GQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEAL--- 103
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 104 ----GLGNWVKAQEWAAVPGGQATYLGNP 128
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 27 SNGGRISMRK----TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG 82
S GGR+ + A K VSS DR G ++L G PGD+G+D G
Sbjct: 36 STGGRLMRERLVVVRAGKEVSSVCEPLPPDRP--YGSLVALHLNWLDGSLPGDFGFDPFG 93
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
L +DP+T + E+IH RWAML G + PE L R G W+ AG++
Sbjct: 94 LGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGF-IENFSWYDAGSR 145
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 121
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 122 NAPQWYDAG 130
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G GDYG+D L +P+T + E++H R+AMLGA G + + A+ G+
Sbjct: 39 PPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLG 98
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
F E W+ AG + + +D+ P+L+
Sbjct: 99 FPE--WYDAGKVVVEKNNIDF---PTLL 121
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPW 48
MA STMALSSS F GKAV L+PS +E+S GRI+MRKTA+ K SSGSPW
Sbjct: 1 MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPW 51
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 75/150 (50%), Gaps = 25/150 (16%)
Query: 1 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTASKSVSSGSPWYGLD 52
MAT + SSS F +AV + PS S G + R A+ V G G+D
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVD 54
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAML 106
R + S + SYL G PGDYG+D GLS DPE F + R L EVI+ R+AML
Sbjct: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAML 111
Query: 107 GALGCVFPELLARNGVKFGEA--VWFKAGA 134
GA+G + PE L + G+ E WF+ G
Sbjct: 112 GAVGAIAPEYLGKVGLIPQETALAWFQTGV 141
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G GDYG+D L +P+T + E++H R+AMLGA G + + A+ G+
Sbjct: 39 PPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLG 98
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
F E W+ AG + + +D+ P+L+
Sbjct: 99 FPE--WYDAGKVVVEKNNIDF---PTLM 121
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G GDYG+D L +P+T + E++H R+AMLGA G + + A+ G+
Sbjct: 39 PPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLG 98
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
F E W+ AG + + +D+ P+L+
Sbjct: 99 FPE--WYDAGKVVVEKNNIDF---PTLM 121
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+PP YL G GD+G+D GL DPE + E++H R+AM G G + +LL G+
Sbjct: 64 DPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGI 123
Query: 123 KFGEAVWFKAGAQIF 137
VW++AGA F
Sbjct: 124 S-NLPVWYEAGAVKF 137
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G GDYG+D L +P+T + E++H R+AMLGA G + + A+ G+
Sbjct: 39 PPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLG 98
Query: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
F E W+ AG + + +D+ P+L+
Sbjct: 99 FPE--WYDAGKVVVEKNNIDF---PTLM 121
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGI-I 121
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 122 NAPQWYDAG 130
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 27 SNGGRISMRKTASKSVS-SGSPWYGLDRVKYLGP----FSGEP---PSYLTGEFPGDYGW 78
SNG + SM KT K+ S + YG DR+K+L GE P +LTG PGD G+
Sbjct: 1368 SNGSQ-SMVKTVVKNTGLSEADLYGNDRIKFLPKSIINLPGENVIVPPHLTGGLPGDIGF 1426
Query: 79 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 126
D A + K RE E+I+ RWAML A+G + PE L + G+ +GE
Sbjct: 1427 DPLKFGAQSDLL-KFRERELINGRWAMLAAIGVLLPEFLFKFGL-YGE 1472
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 79/163 (48%), Gaps = 25/163 (15%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVS-----SGSP--WYGLDR 53
MAT + SSS A GGR S + ++S+ VS +P G DR
Sbjct: 1 MATQALVSSSSITASA-----EAARQILGGR-SFQSSSSRKVSFAVRAEATPPAKQGADR 54
Query: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLG 107
+ S + SYL G PGDYG+D GLS DPE F + L E+I+ R+AMLG
Sbjct: 55 QLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSWLAYGEIINGRYAMLG 111
Query: 108 ALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNP 148
A+G + PE+L + G+ E WFK G I G DY +P
Sbjct: 112 AVGAIAPEILGKAGLIPPETALPWFKTGV-IPPAGTYDYWADP 153
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 121
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 122 NAPQWYDAGKAEYFASSSTLFVIEFILFH 150
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-I 121
Query: 125 GEAVWFKAGAQ 135
W+ AG +
Sbjct: 122 NVPKWYAAGKE 132
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D L+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGI-I 121
Query: 125 GEAVWFKAGAQ 135
W+ AG Q
Sbjct: 122 NVPKWYDAGKQ 132
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-I 121
Query: 125 GEAVWFKAGAQ 135
W+ AG +
Sbjct: 122 NVPKWYAAGKE 132
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G GD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGI-I 114
Query: 125 GEAVWFKAGAQIF 137
W+ AG +
Sbjct: 115 NAPQWYDAGKSTY 127
>gi|170425|gb|AAA34156.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 51
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPW 48
MA STMALSSS F GKAV L+PS +E+S GRI+MRKTA+ K SSGSPW
Sbjct: 1 MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPW 51
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 48 WYGLDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
WYG +R YL G + + PSYL G GDYG+D GL AD + R E++H RWA
Sbjct: 93 WYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGKV-KDYRVAEILHARWA 151
Query: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 140
ML G V PE L G VW + G ++F +G
Sbjct: 152 MLAVPGVVIPEALNIPG-----GVWTETG-KVFLDG 181
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G GD+G+D GL DP+ + E++H R+AM G G +F +LL +G +
Sbjct: 11 PPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASG-R 69
Query: 124 FGEAVWFKAGAQIFS 138
VWF+AGA F
Sbjct: 70 TDIPVWFEAGATKFD 84
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSP--WYGLDRVKYLG 58
MA + +G+ V A S R S RK +S SP G DR +
Sbjct: 1 MAAQALLSGRQLLGRPVQSAVS--------RSSARKAPFVVRASSSPPAKQGADRQLWFA 52
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 112
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 53 --SKQSLSYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 109
Query: 113 FPELLARNGVKFGEAV--WFKAGA 134
PE+ + G+ E WFK G
Sbjct: 110 APEIFGKMGIIPPETALPWFKTGV 133
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G PGD G D GL+ DPE+ + E+++ RWAMLG G PE+L G+
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGL-I 120
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 121 NVPKWYDAG 129
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L P DYG+D GL ++PE + E++HCR+AMLG G + P LL + G+
Sbjct: 40 PQHLNRNLPADYGFDPLGLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGI-L 98
Query: 125 GEAVWFKAG 133
W++AG
Sbjct: 99 NVPQWYEAG 107
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D G ++PE+ + E++H RWAML G + PE+L + G
Sbjct: 77 PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGF- 135
Query: 124 FGEAVWFKAGAQIF 137
E W+ AG + +
Sbjct: 136 MEEFSWYTAGEREY 149
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D G ++PE+ + E++H RWAML G + PE+L + G
Sbjct: 77 PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGF- 135
Query: 124 FGEAVWFKAGAQIF 137
E W+ AG + +
Sbjct: 136 MEEFSWYTAGEREY 149
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPW 48
MA STMALSSS F GK V LAPS +E++ GRI+MRKTA+ K SSGSPW
Sbjct: 1 MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMRKTAAKPKPASSGSPW 51
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D G ++PE+ + E++H RWAML G + PE+L + G
Sbjct: 74 PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGF- 132
Query: 124 FGEAVWFKAGAQIF 137
E W+ AG + +
Sbjct: 133 MEEFSWYTAGEREY 146
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 69/143 (48%), Gaps = 20/143 (13%)
Query: 1 MATSTMALS---SSFV--GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSP---WYGLD 52
MA S LS SSF+ GK + A GN + G + RKT ++ P W +
Sbjct: 1 MAVSGAVLSGLGSSFLTGGKRSSTA-LGNGVGTGAQRVGRKTLIVVAAAAQPKKSW--IP 57
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 112
VK G F P +L G PGDYG+D GL DP RE E+IH RWAM LG
Sbjct: 58 AVKGGGNFL--DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 115
Query: 113 FPELLARNGVKFGEAVWFKAGAQ 135
+ A +GV WF+AGAQ
Sbjct: 116 VGQ--AWSGVP-----WFEAGAQ 131
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE+ + E+++ RWAMLG G + PE+L G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGF-I 120
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 121 DVPKWYDAG 129
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
F G+P P +L G PGD+G+D GL+ PE + +E EV HCRWAML G + PE L
Sbjct: 20 FPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEAL 78
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 122
Query: 125 GEAVWFKAGAQIF 137
W+ AG + +
Sbjct: 123 NVPEWYDAGKEQY 135
>gi|170420|gb|AAA34154.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
Length = 51
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 1 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPW 48
MA STMALSSS F GK V LAPS +E++ GRI+MRKTA+ K SSGSPW
Sbjct: 1 MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMRKTAAKPKPASSGSPW 51
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGI-I 123
Query: 125 GEAVWFKAGAQIF 137
W+ AG + +
Sbjct: 124 NVPEWYDAGKEQY 136
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P +L G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL 109
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGI-L 119
Query: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIH 152
W+ AG A+ F+ ++ L H
Sbjct: 120 NVPKWYDAGKAEYFASSSTLFVIEFILFH 148
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P +L G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL 109
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G GD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 117
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 118 NAPQWYDAG 126
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA STM S + L+ S ++L G R A+ S ++G + ++
Sbjct: 1 MAASTMQASIGVSCPSTFLSRSSSKLQRGSR----AVAAPSFATGKFKVEAKKGEWCPGL 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ P YL G PGD G+D GL+ DP + E+ + RWAM+G G + PE+L +
Sbjct: 57 AS--PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKI 114
Query: 121 GVKFGEAVWFKAG 133
GV +W+ AG
Sbjct: 115 GV-INAPLWYDAG 126
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G GD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 117
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 118 NAPQWYDAG 126
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
F G P P++L G GDYG+D L + ET + E++H R+AMLGA G + + A
Sbjct: 34 FPGNPAPAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELVHGRFAMLGAAGIILTSIGA 93
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
+ G+ F E W+ AG + + +D+ P+LI
Sbjct: 94 KVGLGFPE--WYDAGKVVVEKNNIDF---PTLI 121
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P +L G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 52 GQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL 108
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PS+L G PGD+G+D GL DP RE E+IH RWAM LG G +
Sbjct: 67 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFI-------GQAY 119
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 120 SGVPWFEAGAQ 130
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 26 LSNGGRISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG 82
L + GR+ + K+ + V+ GS GL + P+YL G GD G+D
Sbjct: 25 LGDSGRVGLAKSTRRDVAVQAKGSWLPGL-----------QSPAYLDGSLAGDNGFDPLA 73
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
L+ DPE + E+++ RWAMLG G + PE+L + G+ W+ AG + +
Sbjct: 74 LAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-LNAPEWYDAGKETY 127
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 26 LSNGGRISMRKTASKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG 82
L + GR+ + K+ + V+ GS GL + P+YL G GD G+D
Sbjct: 8 LGDSGRVGLAKSTRRDVAVQAKGSWLPGL-----------QSPAYLDGSLAGDNGFDPLA 56
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
L+ DPE + E+++ RWAMLG G + PE+L + G+ W+ AG + +
Sbjct: 57 LAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-LNAPEWYDAGKETY 110
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 35 RKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
++ ++SV S R P S EP YL + PG++ +D L + T + R
Sbjct: 15 KQAVNRSVVRPSIRVQAQRAGNFAPGS-EPKEYLN-DLPGNFNFDPLELGKEKGTLQRYR 72
Query: 95 ELEVIHCRWAMLGALGCVFPELL 117
E E+IHCRWAMLGA GC+ E+L
Sbjct: 73 EAELIHCRWAMLGAAGCLAVEVL 95
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGI-L 121
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 122 NVPKWYDAG 130
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MA STM S + L+ S ++L G R A+ S ++G + ++
Sbjct: 1 MAASTMQASIGVSCPSTFLSGSSSKLQRGSR----AVAAPSFATGKFKVEAKKGEWCPGL 56
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
+ P YL G PGD G+D GL+ DP + E+ + RWAM+G G + PE+L +
Sbjct: 57 AS--PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKI 114
Query: 121 GVKFGEAVWFKAG 133
GV +W+ AG
Sbjct: 115 GV-INAPLWYDAG 126
>gi|224108105|ref|XP_002314723.1| predicted protein [Populus trichocarpa]
gi|222863763|gb|EEF00894.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/31 (87%), Positives = 28/31 (90%)
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
+FG A WFKAGAQIFSEGGLD LGNPSLIHA
Sbjct: 17 RFGLADWFKAGAQIFSEGGLDCLGNPSLIHA 47
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PS+L G PGD+G+D GL DP RE E+IH RWAM LG G +
Sbjct: 68 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAY 120
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 121 SGVPWFEAGAQ 131
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+D GL+ DP++ + E+++ RWAMLG G + PE+L G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGF-I 120
Query: 125 GEAVWFKAG 133
W+ AG
Sbjct: 121 DVPKWYDAG 129
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 25/136 (18%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVK---YLGPFSGEPP 65
++F GKA A + N R+ R KS+++ +DR K Y+G S
Sbjct: 9 QAAFSGKAARPAQA-----NRARLVCR-AEEKSIAT------VDRSKDQLYVGA-SQSSL 55
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
+YL G PGD+G+D GL DP F + + L EVIH RWAMLGA GC+ PE+L
Sbjct: 56 AYLDGTLPGDFGFDPLGL-LDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGA 114
Query: 120 NGV--KFGEAVWFKAG 133
G+ + VW+++G
Sbjct: 115 AGLIPEKTNIVWYESG 130
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P+YL G PGD G+ GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGI-L 70
Query: 125 GEAVWFKAGAQ 135
W+ AG +
Sbjct: 71 NVPKWYDAGKE 81
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+P P +L G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 13 GQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL 69
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
+YL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE+L +
Sbjct: 64 TYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGK 122
Query: 120 NGVKFGEAV--WFKAGA 134
G+ E WFK G
Sbjct: 123 LGLIPPETALPWFKTGV 139
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 14 GKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGE 71
GKA+ L P ++ S ++R AS K V G DR + S + SYL G
Sbjct: 31 GKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQG------DRQLWFA--SDQSLSYLDGS 82
Query: 72 FPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFG 125
PGDYG+D GL DPE E E+I+ R+AMLGA+G + PE+L + G+
Sbjct: 83 LPGDYGFDPLGL-MDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQ 141
Query: 126 EAV--WFKAGAQIFSEGGLDYLGNP 148
E WF+ G I G +Y +P
Sbjct: 142 ETALPWFQTGV-IPPAGTYNYWADP 165
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P +L GE PGDYG+D L +P+ + E+ H RWAMLG G PE+L + G+
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E P++L G+ P DYG+D L P+ A+ RE E++H RWAM+G G V E+
Sbjct: 39 EAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAVGVEIA----- 93
Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGN 147
G+ W A + + YLGN
Sbjct: 94 --GQGDWASAQPTTW-DATAKYLGN 115
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 32/142 (22%)
Query: 1 MATSTMAL--SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSS------GSPWYGLD 52
+A S +A+ +FVG+AV + S + +K VS+ G WY
Sbjct: 7 IAASNVAVLARKAFVGQAV-------------KASAKPAGAKPVSTVVRADLGKKWYT-- 51
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 112
+PP+YL G PGDYG+D + +PE ++ E+ + RWAM+G G +
Sbjct: 52 --------GAKPPAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGML 103
Query: 113 FPELLARNGVKFGEAVWFKAGA 134
F + L + G+ W++AGA
Sbjct: 104 FTDALTQFGIS-DLPDWYEAGA 124
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
PP +L G PGDYG+D GL D A ++ E++H RWAMLG G PE+
Sbjct: 50 PPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIF 103
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P++L G PGD+G+D GL ADPE +E E+++ RWAM+ G E+L G
Sbjct: 61 PAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICTTEILGIGG--- 117
Query: 125 GEAVWFKAGA 134
W++AGA
Sbjct: 118 ---PWYEAGA 124
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 94 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
+ E+IH RWAMLGA GC+ PE + G G EAVWFK GA + L+Y G
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|170413|gb|AAA34151.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 49
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPW 48
MA +TMALSS SF G+AV L+PS +E+S GRI+MRK +KS S SPW
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPW 49
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGV-- 125
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 126 ---AWFEAGAQ 133
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGV-- 125
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 126 ---AWFEAGAQ 133
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 27 SNGGRI---SMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGL 83
SNG R+ + +K ++K S W L V+ G PS+L G PGDYG+D GL
Sbjct: 1 SNGARVVAMATKKISAKPSSGKKSW--LPGVRAGGDLV--DPSWLDGSLPGDYGFDPLGL 56
Query: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 142
DP RE E+IH RWAM LG + A +GV + EA FS G L
Sbjct: 57 GKDPAFLKWYREAEIIHGRWAMAAVLGIFVGQ--AWSGVPWFEAGAAPGAVAPFSFGSL 113
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
+ P++L G PGD+G+D GLS DPE + E+ H RWAMLG G V P+L +
Sbjct: 42 DAPAHLDGSLPGDFGFDPLGLSVDPEMKKWMVQAELQHARWAMLGVAGMVGPDLAPWDTP 101
Query: 123 KFGEA----VWFKAGAQIFSE 139
+ EA W AG F +
Sbjct: 102 SWIEAGKFEYWAPAGPLFFIQ 122
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
E PSYL GE PGD+G+D L DP ++ E+ + RWAML A G +F +LL G
Sbjct: 46 EIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGA 105
Query: 123 KFGEAV--WFKA 132
A WFKA
Sbjct: 106 GGPAAATPWFKA 117
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGDYG+D GL DP RE E+IH RWAM LG + A +GV
Sbjct: 62 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFVGQ--AWSGVP- 118
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 119 ----WFEAGAQ 125
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
P++L E PGDYG+D L DPE + E+ H RWAMLG G PE+L G+
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGI 66
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YL G GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 122
Query: 125 GEAVWFKAGAQIF 137
W+ AG + +
Sbjct: 123 NVPEWYDAGKEQY 135
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 56/123 (45%), Gaps = 27/123 (21%)
Query: 9 SSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLD----------RVKYLG 58
S SF G+AV L+PS +E S GRI+MRK +KS S SPW + +V +G
Sbjct: 10 SPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPWSLVHAQSILAIWACQVVLMG 69
Query: 59 PFSG-----------EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 107
G P Y G F D GL+ DPE FA+ + E+ + R AM
Sbjct: 70 AVEGYRIAGGPLGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVKEIKNGRLAMFS 123
Query: 108 ALG 110
G
Sbjct: 124 MFG 126
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 56 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGAL 109
Y+ S + SYL G PGDYG+D GLS DPE F L EVIH RWAMLG
Sbjct: 66 YMLGVSDQSLSYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLGVA 124
Query: 110 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLI 151
G PE + VWFK G I ++G D+ P+ +
Sbjct: 125 GATAPETMKGFIPDSTAVVWFKNGI-IPAQGSYDFWAPPTAL 165
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G + PE+L +
Sbjct: 64 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 122
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 123 AGLIPAETALPWFQTG 138
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G + PE+L +
Sbjct: 64 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 122
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 123 AGLIPAETALPWFQTG 138
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G + PE+L +
Sbjct: 64 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 122
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 123 AGLIPAETALPWFQTG 138
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGDYG+D GL D ++ E+ H RWAMLG G PEL+ V+
Sbjct: 51 PPKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVE 110
Query: 124 FGEAVWFKA 132
W +A
Sbjct: 111 GAMPNWAEA 119
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
G+ P++L G PGD+G+D GL ADPE A E E +H RWAML G E++
Sbjct: 46 GDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVV 101
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 26 LSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
S G ++ T++ V G+ G +R + S + SYL G PGDYG+D GLS
Sbjct: 31 FSRKGSFIVKATSTPPVKQGA---GANRPLWFA--SEQSLSYLDGSLPGDYGFDPLGLS- 84
Query: 86 DPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAG 133
DPE F + R L E+I+ R+AMLGA G + PE+L + G+ E WF+ G
Sbjct: 85 DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQTG 140
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 8 LSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSY 67
L+SSFV + + SNG R+ M+ +G+ G D P+Y
Sbjct: 6 LTSSFVARGAARPATKLPKSNGSRVVMK--------AGNWLPGSDT-----------PAY 46
Query: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 127
L G PG +G+D GL + P + +E E++H RWAM G G + ELL G+
Sbjct: 47 LDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELL-------GQG 98
Query: 128 VWFKAGAQIFSEGGLDYLGNP 148
W++A + G YLG P
Sbjct: 99 DWYQAPLWAVNGGAPTYLGIP 119
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTG 141
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
PSYL G GD G+D GL+ DPE + E+++ RWAMLG G + PE+L + G+
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-I 117
Query: 125 GEAVWFKA 132
W+ A
Sbjct: 118 NAPQWYDA 125
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTG 141
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAGA 134
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTGV 142
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAGA 134
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTGV 142
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAGA 134
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTGV 142
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 27/27 (100%)
Query: 127 AVWFKAGAQIFSEGGLDYLGNPSLIHA 153
AVWFKAG+QIFSEGGLDYLGNP+LIHA
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHA 27
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGDYG+D GL DP RE E+IH RWAM LG G +
Sbjct: 64 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFV-------GRAW 116
Query: 125 GEAVWFKAGAQ 135
WF+AGAQ
Sbjct: 117 SGVPWFEAGAQ 127
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP++L G+ PGD+G+D GL A+ E+ +E E++H RWAM G + E++ +
Sbjct: 38 PPAHLKGDLPGDFGFDPLGLGANAESLKWFKESELVHSRWAMAAVAGILVQEIVRPD--- 94
Query: 124 FGEAVWFKAGAQIFSEGG 141
W+ AG ++ S G
Sbjct: 95 ---VFWYNAGKEVESPLG 109
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 1 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTASKSVSSGSPWYGLD 52
MAT + SSS F +AV + PS S G ++ +S V G +
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQN----GAN 56
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAML 106
R + S + SYL G PGD+G+D GLS DPE F + R L E+I+ R+AML
Sbjct: 57 RQLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAML 113
Query: 107 GALGCVFPELLARNGVKFGEAV--WFKAGA 134
GA G + PE+L + G+ E WF+ G
Sbjct: 114 GAAGAIAPEILGKAGLIPAETALPWFQTGV 143
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MAT + SSS A + S S I + S V + +P + L
Sbjct: 299 MATQVLLSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAAAPVKKGGANRQLWFA 358
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 114
S + SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G + P
Sbjct: 359 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAP 417
Query: 115 ELLARNGVKFGEAV--WFKAGA 134
E+L + G+ E WF+ G
Sbjct: 418 EILGKAGLIPAETALPWFQTGV 439
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 1 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTASKSVSSGSPWYGLD 52
MAT + SSS F +AV + PS S G ++ +S V G +
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQN----GAN 56
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAML 106
R + S + SYL G PGD+G+D GLS DPE F + R L E+I+ R+AML
Sbjct: 57 RQLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAML 113
Query: 107 GALGCVFPELLARNGVKFGEAV--WFKAGA 134
GA G + PE+L + G+ E WF+ G
Sbjct: 114 GAAGAIAPEILGKAGLIPAETALPWFQTGV 143
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GL DP RE E+IH RWAML LG + A G+
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP- 129
Query: 125 GEAVWFKAGAQ 135
WF+AGA
Sbjct: 130 ----WFEAGAD 136
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 1 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTASKSVSSGSPWYGLD 52
MAT + SSS F +AV + PS S G ++ +S V G +
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQN----GAN 56
Query: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAML 106
R + S + SYL G PGD+G+D GLS DPE F + R L E+I+ R+AML
Sbjct: 57 RQLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAML 113
Query: 107 GALGCVFPELLARNGVKFGEAV--WFKAG 133
GA G + PE+L + G+ E WF+ G
Sbjct: 114 GAAGAIAPEILGKAGLIPAETALPWFQTG 142
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPF 60
MAT + SSS A + S S I + S V + +P + L
Sbjct: 283 MATQVLLSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAAAPVKKGGANRQLWFA 342
Query: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 114
S + SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G + P
Sbjct: 343 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAP 401
Query: 115 ELLARNGVKFGEAV--WFKAG 133
E+L + G+ E WF+ G
Sbjct: 402 EILGKAGLIPAETALPWFQTG 422
>gi|359754923|gb|AEV59651.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 170
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G + PE+L +
Sbjct: 68 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 126
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 127 AGLIPEETALPWFQTG 142
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,593,188,415
Number of Sequences: 23463169
Number of extensions: 109655562
Number of successful extensions: 224495
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 221687
Number of HSP's gapped (non-prelim): 2306
length of query: 153
length of database: 8,064,228,071
effective HSP length: 116
effective length of query: 37
effective length of database: 9,637,467,763
effective search space: 356586307231
effective search space used: 356586307231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)