BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044971
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 230 bits (587), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/121 (91%), Positives = 114/121 (94%), Gaps = 2/121 (1%)
Query: 35 RKTASK--SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
RKTA K +V S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 1 RKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 60
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 153 A 153
A
Sbjct: 121 A 121
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
+D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 161 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 204
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 225 bits (574), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 110/117 (94%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 65 EVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
+D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 222 bits (565), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 109/117 (93%)
Query: 37 TASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153
EVIH RWAMLGALG VFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HA
Sbjct: 65 EVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121
+D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI- 131
Query: 124 FGEAVWFKAGAQIF 137
W+ AG Q +
Sbjct: 132 LNTPSWYTAGEQEY 145
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 64 PPSYLTGE---FPGDYGWDTAGL-SADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
P + LTG +PG +D G SA P+ + R E+ + R AML +G F +
Sbjct: 184 PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 243
Query: 120 NG 121
G
Sbjct: 244 TG 245
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-L 59
Query: 125 GEAVWFKAGAQ 135
W+ AG Q
Sbjct: 60 NTPSWYTAGEQ 70
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 64 PPSYLTGE---FPGDYGWDTAGL-SADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
P + LTG +PG +D G SA P+ + R E+ + R AML +G F +
Sbjct: 111 PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 170
Query: 120 NG 121
G
Sbjct: 171 TG 172
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 119 RNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 148
G W KA GG YLGNP
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP 132
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 60 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 59
Query: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNP 148
G W KA GG YLGNP
Sbjct: 60 ------GYGNWVKAQEWAALPGGQATYLGNP 84
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-I 121
Query: 125 GEAVWFKAGAQ 135
W+ AG +
Sbjct: 122 NVPKWYAAGKE 132
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 9/76 (11%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAG 133
G+ E WF+ G
Sbjct: 126 AGLIPQETALPWFRTG 141
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
PGD+G+D GL P + +E E+IHCRWAML G + PE L G W KA
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKA 55
Query: 133 GAQIFSEGGL-DYLGNP 148
GG YLGNP
Sbjct: 56 QEWAALPGGQATYLGNP 72
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
+DPE+ N + E++H RWAMLGA G PE L + G+ W+ AG Q
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-LNTPSWYTAGEQ 50
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 64 PPSYLTGE---FPGDYGWDTAGL-SADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
P + LTG +PG +D G SA P+ + R E+ + R AML +G F +
Sbjct: 91 PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 150
Query: 120 NG 121
G
Sbjct: 151 TG 152
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
L+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE 52
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 43/127 (33%), Gaps = 51/127 (40%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN-------------------- 93
P YL G GDYG+D GL E AKN
Sbjct: 21 PEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80
Query: 94 ------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 141
RE E+IH RWAML LG + E L G+ W AG EG
Sbjct: 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL--TGI-----TWQDAGKVELIEGS 133
Query: 142 LDYLGNP 148
YLG P
Sbjct: 134 -SYLGQP 139
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
+D GL++DPE + E+ H R AM+G LG
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLG 210
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 85 ADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGA 134
+DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G
Sbjct: 1 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV 58
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGA 134
E+I+ R+AMLGA G + PE+L + G+ E WF+ G
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGV 45
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 135
PE + E+++ RWAMLG G + PE+ G+ W+ AG +
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE 48
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 33 SMRKTASK---SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
++R T + VS+ PW+G+++ L G P + + FPG G G+ AD
Sbjct: 112 NLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADK-- 169
Query: 90 FAKNRELEVIHCRWAMLGAL 109
A R++ H R + +
Sbjct: 170 -AYGRDIVEAHYRACLYAGI 188
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 33 SMRKTASK---SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86
++R T + VS+ PW+G+++ L G P + + FPG G G+ AD
Sbjct: 131 NLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGAD 187
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 77 GWDTA-GLSADPETFAKNRELEVIHCR----WAMLGALG-CVFPELLARNGVKFGEA 127
G+D A G+ ++ + + IH + W L LG FP+ LAR+G+++ A
Sbjct: 82 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSA 138
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
Length = 356
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 20 APSGNELSNGGRISMRKT-ASKSVSSGSPWYGLDR-VKYLGPFSGEPPSYLTGEFPGDYG 77
P+G + R S K +S V++ PWYG+++ L + P + G FPG G
Sbjct: 96 TPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQG 155
Query: 78 WDTAGLSADPETFAKN 93
G+ A+ ++F ++
Sbjct: 156 PYYCGIGAE-KSFGRD 170
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 19 LAPSGNELSNGGRISMRKTASKSVSSGS-----PWYG--LDRVKYLGPFSGEPPS 66
L +GNE NGG IS TA +++ G+ P +G D + ++ FS P+
Sbjct: 157 LFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPT 211
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 19 LAPSGNELSNGGRISMRKTASKSVSSGS-----PWYG--LDRVKYLGPFSGEPPS 66
L +GNE NGG IS TA +++ G+ P +G D + ++ FS P+
Sbjct: 157 LFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPT 211
>pdb|3EFD|L Chain L, The Crystal Structure Of The Cytoplasmic Domain Of Kcsa
Length = 211
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 7 SPSSLSASVGDRVTITCRASQSVSSAVAWY 36
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 8 SPSSLSASVGDRVTITCRASQSVSSAVAWY 37
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 8 SPSSLSASVGDRVTITCRASQSVSSAVAWY 37
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder
(Sab)
Length = 215
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 8 SPSSLSASVGDRVTITCRASQSVSSAVAWY 37
>pdb|3EFF|A Chain A, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|C Chain C, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 215
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 7 SPSSLSASVGDRVTITCRASQSVSSAVAWY 36
>pdb|3PNW|A Chain A, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|D Chain D, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|G Chain G, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|J Chain J, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|M Chain M, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|P Chain P, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|S Chain S, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|V Chain V, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
Length = 228
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 8 SPSSLSASVGDRVTITCRASQSVSSAVAWY 37
>pdb|3N85|L Chain L, Crystallographic Trimer Of Her2 Extracellular Regions In
Complex With Tryptophan-Rich Antibody Fragment
Length = 217
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 7 SPSSLSASVGDRVTITCRASQSVSSAVAWY 36
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 7 SPSSLSASVGDRVTITCRASQSVSSAVAWY 36
>pdb|2QR0|A Chain A, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|E Chain E, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|G Chain G, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|K Chain K, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|M Chain M, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|Q Chain Q, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|S Chain S, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|W Chain W, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
Length = 213
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 7 SPSSLSASVGDRVTITCRASQSVSSAVAWY 36
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 APSGNELSNGGRISMRKTASKSVSSGSPWY 49
+PS S G R+++ AS+SVSS WY
Sbjct: 8 SPSSLSASVGDRVTITCRASQSVSSAVAWY 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,959,425
Number of Sequences: 62578
Number of extensions: 215354
Number of successful extensions: 794
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 46
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)