Query 044971
Match_columns 153
No_of_seqs 213 out of 954
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 8.2E-43 1.8E-47 294.0 9.1 145 9-153 6-151 (262)
2 PLN00171 photosystem light-ha 100.0 8.1E-35 1.8E-39 251.2 6.8 110 41-150 96-206 (324)
3 PLN00187 photosystem II light- 100.0 3.4E-33 7.4E-38 238.0 7.7 95 45-149 44-181 (286)
4 PLN00098 light-harvesting comp 100.0 2.9E-30 6.2E-35 218.4 8.9 88 45-135 54-141 (267)
5 PLN00048 photosystem I light h 100.0 2.1E-29 4.6E-34 212.6 7.9 113 28-149 22-142 (262)
6 PLN00101 Photosystem I light-h 100.0 5.7E-29 1.2E-33 208.9 8.5 88 45-135 45-132 (250)
7 PLN00097 photosystem I light h 100.0 7.3E-29 1.6E-33 207.6 8.7 84 49-135 40-123 (244)
8 PLN00147 light-harvesting comp 99.9 8.7E-27 1.9E-31 195.9 7.1 89 46-137 38-126 (252)
9 PLN00099 light-harvesting comp 99.9 1.9E-26 4.1E-31 193.0 6.7 91 50-149 41-132 (243)
10 PLN00100 light-harvesting comp 99.9 8E-26 1.7E-30 189.5 7.3 78 49-135 31-108 (246)
11 PLN00170 photosystem II light- 99.9 2.7E-25 5.9E-30 187.1 6.7 77 51-135 49-130 (255)
12 PF00504 Chloroa_b-bind: Chlor 99.8 2.4E-20 5.2E-25 144.0 5.6 69 64-133 1-72 (156)
13 PLN00147 light-harvesting comp 99.7 5.7E-17 1.2E-21 136.7 4.7 58 65-122 172-229 (252)
14 PLN00089 fucoxanthin-chlorophy 99.7 5.5E-17 1.2E-21 133.4 4.5 54 70-123 153-207 (209)
15 PLN00089 fucoxanthin-chlorophy 99.7 1.1E-16 2.3E-21 131.7 5.1 62 59-122 42-104 (209)
16 PLN00048 photosystem I light h 99.6 2.2E-16 4.8E-21 133.7 3.7 53 70-122 187-239 (262)
17 PLN00025 photosystem II light 99.6 1.1E-15 2.3E-20 129.6 4.2 53 69-122 183-235 (262)
18 PLN00187 photosystem II light- 99.6 2.6E-15 5.5E-20 128.6 4.1 52 71-122 213-264 (286)
19 PLN00099 light-harvesting comp 99.5 4.2E-15 9.2E-20 124.8 4.0 52 70-122 164-216 (243)
20 PLN00098 light-harvesting comp 99.5 5.4E-15 1.2E-19 125.6 4.3 52 71-122 192-244 (267)
21 PLN00171 photosystem light-ha 99.5 1.4E-14 3E-19 125.8 4.0 51 72-122 252-302 (324)
22 PF00504 Chloroa_b-bind: Chlor 99.5 1.4E-14 3E-19 111.9 3.3 50 67-116 107-156 (156)
23 PLN00097 photosystem I light h 99.5 3.7E-14 8E-19 119.2 4.3 45 78-122 182-226 (244)
24 PLN00120 fucoxanthin-chlorophy 99.4 2.1E-13 4.5E-18 111.7 3.8 51 70-120 142-195 (202)
25 PLN00100 light-harvesting comp 99.4 1.6E-13 3.5E-18 115.5 3.1 47 71-122 143-189 (246)
26 PLN00101 Photosystem I light-h 99.3 4.9E-13 1.1E-17 112.8 3.1 46 72-122 184-229 (250)
27 PLN00170 photosystem II light- 99.3 9.2E-13 2E-17 111.4 3.6 50 72-122 191-249 (255)
28 PLN00120 fucoxanthin-chlorophy 99.3 1.2E-12 2.7E-17 107.2 3.2 39 78-116 47-87 (202)
29 PHA02337 putative high light i 98.1 1E-06 2.2E-11 54.5 1.6 30 94-123 3-32 (35)
30 PLN00014 light-harvesting-like 97.1 0.00016 3.5E-09 61.2 0.7 30 93-122 159-188 (250)
31 PLN00084 photosystem II subuni 96.3 0.0016 3.5E-08 53.4 1.3 34 89-122 131-165 (214)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=8.2e-43 Score=293.96 Aligned_cols=145 Identities=78% Similarity=1.323 Sum_probs=125.9
Q ss_pred hhhccccccccCC-CCCccccccceeeecccCcccCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 044971 9 SSSFVGKAVNLAP-SGNELSNGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87 (153)
Q Consensus 9 ~s~f~g~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dp 87 (153)
.++|+|+...... ...+..+.+|+++|+..++...+.+.||++||++|||||+.++|+||||++||||||||+||++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp 85 (262)
T PLN00025 6 STAFAGQAALKPPNELSRKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADP 85 (262)
T ss_pred hhhhhccccccCCcccchhccccchhhchhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCH
Confidence 4689999864332 233334557888887533333356789999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCccccccceecccCCCcCCCCCCcccCC
Q 044971 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA 153 (153)
Q Consensus 88 e~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~W~~aG~~~~~~~~~~ylg~~~l~~~ 153 (153)
++++++|++||+||||||||++||++||++++.|+++++++||++|++++++++++|+++|.++|+
T Consensus 86 ~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~ 151 (262)
T PLN00025 86 ETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 151 (262)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchh
Confidence 999999999999999999999999999999999998888999999999999999999999998873
No 2
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=8.1e-35 Score=251.17 Aligned_cols=110 Identities=48% Similarity=0.927 Sum_probs=100.0
Q ss_pred ccCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcC
Q 044971 41 SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120 (153)
Q Consensus 41 ~~~~~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~ 120 (153)
++++.+.||++||++||||+..++|+||||++||||||||+||++||+++++||++||+||||||||++|+++||++++.
T Consensus 96 ~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~ 175 (324)
T PLN00171 96 KARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLF 175 (324)
T ss_pred hhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccC
Confidence 34556889999999999987778999999999999999999999999999999999999999999999999999999887
Q ss_pred Cc-ccCCccccccceecccCCCcCCCCCCcc
Q 044971 121 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150 (153)
Q Consensus 121 G~-~~~~~~W~~aG~~~~~~~~~~ylg~~~l 150 (153)
|. .+.+++||++|...+++..++|++.|.+
T Consensus 176 g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~ 206 (324)
T PLN00171 176 GAVHFAEPVWWRVGYAKLQGDTLDYLGIPGL 206 (324)
T ss_pred CccccCccchhhcccccccccchhhccCCcc
Confidence 64 4567899999988888888999999874
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.98 E-value=3.4e-33 Score=238.00 Aligned_cols=95 Identities=42% Similarity=0.765 Sum_probs=84.7
Q ss_pred CCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-----------------------------------
Q 044971 45 GSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET----------------------------------- 89 (153)
Q Consensus 45 ~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~----------------------------------- 89 (153)
.+++|++||++|+ | +.++|+||||++||||||||+||++|||.
T Consensus 44 ~~~~~~~~r~~w~-p-~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (286)
T PLN00187 44 KSSKVGADRPLWF-P-GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPF 121 (286)
T ss_pred CccCCCCCccccC-C-CCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccccc
Confidence 4679999999999 4 46999999999999999999999999986
Q ss_pred --------HHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCccccccceecccCCCcCCCCCCc
Q 044971 90 --------FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149 (153)
Q Consensus 90 --------~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~W~~aG~~~~~~~~~~ylg~~~ 149 (153)
++|||++||+||||||||++||++||+++ |+ .||++|.+++.++ .+|+++|.
T Consensus 122 ~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~-----~W~~aG~~~~~~g-~~y~g~~~ 181 (286)
T PLN00187 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV-----TWQDAGKVELVDG-SSYLGQPL 181 (286)
T ss_pred CcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC-----ccccccccccccc-cccccccc
Confidence 59999999999999999999999999985 43 6999999877655 57999873
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.96 E-value=2.9e-30 Score=218.40 Aligned_cols=88 Identities=39% Similarity=0.770 Sum_probs=80.2
Q ss_pred CCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCccc
Q 044971 45 GSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (153)
Q Consensus 45 ~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~ 124 (153)
...+|++||++|+ | +.++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|+ +
T Consensus 54 ~~~~~~~~r~~w~-P-g~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-~ 130 (267)
T PLN00098 54 VCEPLPPDRPLWF-P-GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-I 130 (267)
T ss_pred ccccCCCCccccC-C-CCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc-c
Confidence 3568999999999 3 46899999999999999999999999999999999999999999999999999999998876 4
Q ss_pred CCcccccccee
Q 044971 125 GEAVWFKAGAQ 135 (153)
Q Consensus 125 ~~~~W~~aG~~ 135 (153)
.++.||++|+.
T Consensus 131 ~~~~w~~Ag~~ 141 (267)
T PLN00098 131 ENFSWYDAGAR 141 (267)
T ss_pred cccccccccch
Confidence 56789999963
No 5
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.96 E-value=2.1e-29 Score=212.65 Aligned_cols=113 Identities=39% Similarity=0.646 Sum_probs=92.4
Q ss_pred cccceeeecccCcccCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH------HHHHHHHHHHhhc
Q 044971 28 NGGRISMRKTASKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE------TFAKNRELEVIHC 101 (153)
Q Consensus 28 ~~~r~~~~~~~~~~~~~~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe------~~~~~r~~El~hG 101 (153)
..+++++|..+. ...+++++|++|+ | +.++|+||||++||||||||+||+ ||+ +.+++|++||+||
T Consensus 22 ~~~~~~~~~~~~-----~~~~~~~~r~~w~-p-~~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hG 93 (262)
T PLN00048 22 KKARFVVRAEAT-----PPAKQGADRQLWF-A-SKQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVING 93 (262)
T ss_pred cccceeEecccC-----CCCCCCCCCceec-C-CCCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcc
Confidence 355677775432 2357889999999 4 579999999999999999999997 443 5688999999999
Q ss_pred chhhhhhchhhhhhhhhcCCcccC--CccccccceecccCCCcCCCCCCc
Q 044971 102 RWAMLGALGCVFPELLARNGVKFG--EAVWFKAGAQIFSEGGLDYLGNPS 149 (153)
Q Consensus 102 RlAMLa~~G~i~~e~l~~~G~~~~--~~~W~~aG~~~~~~~~~~ylg~~~ 149 (153)
||||||++||++||++++.|+... ...||++|+ +..++.++|+++|.
T Consensus 94 R~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~-~~~~~~~~y~~~p~ 142 (262)
T PLN00048 94 RFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGV-IPPAGTYDYWADPY 142 (262)
T ss_pred hHHHHHHhhHHHHHHhccCCccccccccccccccc-cccccccccccchh
Confidence 999999999999999998887432 236999997 66677789999874
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.95 E-value=5.7e-29 Score=208.88 Aligned_cols=88 Identities=35% Similarity=0.694 Sum_probs=80.3
Q ss_pred CCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCccc
Q 044971 45 GSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (153)
Q Consensus 45 ~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~ 124 (153)
.+.++.++|++|+ |+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|+++||++++.|+.
T Consensus 45 ~~~~~~~~r~~W~-P~-~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWL-PG-LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccC-CC-CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4568889999999 55 58999999999999999999999999999999999999999999999999999999998873
Q ss_pred CCcccccccee
Q 044971 125 GEAVWFKAGAQ 135 (153)
Q Consensus 125 ~~~~W~~aG~~ 135 (153)
..+.||++|+.
T Consensus 122 ~~p~w~~ag~~ 132 (250)
T PLN00101 122 NAPQWYDAGKA 132 (250)
T ss_pred CCCccccccch
Confidence 45789999964
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.95 E-value=7.3e-29 Score=207.63 Aligned_cols=84 Identities=40% Similarity=0.730 Sum_probs=76.9
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCcc
Q 044971 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128 (153)
Q Consensus 49 ~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~ 128 (153)
.++||++|+ | +.++|+||||++||||||||+||++|+++++++|++||+||||||||++||++||++++.|+ +..++
T Consensus 40 ~~~~R~~w~-P-g~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~-~~~p~ 116 (244)
T PLN00097 40 AAADRPTWL-P-GKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM-ADLPN 116 (244)
T ss_pred cCCCCcccC-C-CCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc-ccCCc
Confidence 458999999 4 45899999999999999999999999999999999999999999999999999999998887 34578
Q ss_pred cccccee
Q 044971 129 WFKAGAQ 135 (153)
Q Consensus 129 W~~aG~~ 135 (153)
||++|+.
T Consensus 117 W~~Ag~~ 123 (244)
T PLN00097 117 WIDAAKW 123 (244)
T ss_pred cccCCcc
Confidence 9999975
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.93 E-value=8.7e-27 Score=195.89 Aligned_cols=89 Identities=38% Similarity=0.773 Sum_probs=79.8
Q ss_pred CCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccC
Q 044971 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125 (153)
Q Consensus 46 ~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~ 125 (153)
+..++++|++|+ |+. ++|+||||++|||+||||+||++|+++++++|++||+||||||||++|+++||+++..|+. .
T Consensus 38 ~~~~~~~R~~wl-P~~-~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~-~ 114 (252)
T PLN00147 38 NPVVAQERPTWL-PGL-DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-N 114 (252)
T ss_pred cccCCCCccccC-CCC-CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc-C
Confidence 457889999999 564 8999999999999999999999999999999999999999999999999999999887763 4
Q ss_pred Cccccccceecc
Q 044971 126 EAVWFKAGAQIF 137 (153)
Q Consensus 126 ~~~W~~aG~~~~ 137 (153)
.+.|+++|..++
T Consensus 115 ~p~w~~ag~~~~ 126 (252)
T PLN00147 115 LPVWYEAGAVKF 126 (252)
T ss_pred Ccchhhcccchh
Confidence 568999996544
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.93 E-value=1.9e-26 Score=192.98 Aligned_cols=91 Identities=40% Similarity=0.745 Sum_probs=79.3
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCccc
Q 044971 50 GLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 129 (153)
Q Consensus 50 g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~W 129 (153)
.++|..|+ |+ .++|+||||++||||||||+||++++++++++|++|||||||||||++|+++||+++. +.|
T Consensus 41 ~~~~~~w~-P~-~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------~~w 111 (243)
T PLN00099 41 VTMSADWM-PG-QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------GNW 111 (243)
T ss_pred cccccccc-CC-CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-------CCc
Confidence 46677888 55 4899999999999999999999999999999999999999999999999999999752 369
Q ss_pred ccccee-cccCCCcCCCCCCc
Q 044971 130 FKAGAQ-IFSEGGLDYLGNPS 149 (153)
Q Consensus 130 ~~aG~~-~~~~~~~~ylg~~~ 149 (153)
++++.. .+.++..+|+|+|.
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~ 132 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV 132 (243)
T ss_pred ccccchhccCcchhhhccCcc
Confidence 998863 45677788998874
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.92 E-value=8e-26 Score=189.51 Aligned_cols=78 Identities=35% Similarity=0.682 Sum_probs=69.8
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCcc
Q 044971 49 YGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128 (153)
Q Consensus 49 ~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~ 128 (153)
-..+|++|+ |+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|+++||+++ + +.
T Consensus 31 ~~~~r~~W~-P~-~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~---~----P~ 101 (246)
T PLN00100 31 AARARPMWY-PG-ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG---L----PK 101 (246)
T ss_pred ccCCCcccC-CC-CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc---c----cc
Confidence 346889999 66 499999999999999999999999999999999999999999999999999999964 2 46
Q ss_pred cccccee
Q 044971 129 WFKAGAQ 135 (153)
Q Consensus 129 W~~aG~~ 135 (153)
||++|..
T Consensus 102 w~~ag~~ 108 (246)
T PLN00100 102 FWEAGAE 108 (246)
T ss_pred hhhcchh
Confidence 8888764
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.91 E-value=2.7e-25 Score=187.15 Aligned_cols=77 Identities=38% Similarity=0.763 Sum_probs=66.4
Q ss_pred CCCccccCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccC
Q 044971 51 LDRVKYLGPFSG-----EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125 (153)
Q Consensus 51 ~dr~~~lgp~~~-----~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~ 125 (153)
.+|.+|+ |+.. .+|+||+|++||||||||+||++|+|+++++|++||+||||||||++||++||++++ .
T Consensus 49 ~~~k~w~-p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g--~--- 122 (255)
T PLN00170 49 QPKKSWI-PAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG--I--- 122 (255)
T ss_pred CCCcccc-CCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC--C---
Confidence 3555666 2321 579999999999999999999999999999999999999999999999999999863 2
Q ss_pred Ccccccccee
Q 044971 126 EAVWFKAGAQ 135 (153)
Q Consensus 126 ~~~W~~aG~~ 135 (153)
.||++|++
T Consensus 123 --~w~~aG~~ 130 (255)
T PLN00170 123 --PWFEAGAD 130 (255)
T ss_pred --ChhhCCcc
Confidence 59999974
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.81 E-value=2.4e-20 Score=144.02 Aligned_cols=69 Identities=46% Similarity=0.776 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc---ccCCccccccc
Q 044971 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV---KFGEAVWFKAG 133 (153)
Q Consensus 64 ~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~---~~~~~~W~~aG 133 (153)
+|++|+|+++||+||||+||++++ +++++|+.||+|||+||||++|++++|++++.+. ....+.|+.++
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~ 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh
Confidence 699999999999999999999888 9999999999999999999999999999976432 12234476644
No 13
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.66 E-value=5.7e-17 Score=136.66 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 65 p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+..+++.+|||++|||+||++|++++++++++|||||||||+|++|+++|+++++.|+
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp 229 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGP 229 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCh
Confidence 4556677999999999999999999999999999999999999999999999999886
No 14
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.66 E-value=5.5e-17 Score=133.36 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCCC-CCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcc
Q 044971 70 GEFPGDYGWDTAGL-SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123 (153)
Q Consensus 70 G~~PGD~GfDPlGL-~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~ 123 (153)
+++|||+||||+|| .+|+++++++|.+||+||||||+|++|+++||+++++|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 57899999999999 5689999999999999999999999999999999998873
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.65 E-value=1.1e-16 Score=131.70 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 59 PFSGEPPSYLTGEFPGDYGWDTAGLSA-DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 59 p~~~~~p~~L~G~~PGD~GfDPlGL~~-dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
||...+| -|+|. .||++|||+||+. ++++++++|++||||||+||||++|+++||+++..|.
T Consensus 42 pf~~~~p-~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 42 GFAAKEF-MFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred ccccCCc-cccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 4543344 68898 9999999999975 6788999999999999999999999999999876653
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.62 E-value=2.2e-16 Score=133.68 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 70 G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|.
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp 239 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGP 239 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCH
Confidence 46999999999999999999999999999999999999999999999999885
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.58 E-value=1.1e-15 Score=129.62 Aligned_cols=53 Identities=30% Similarity=0.562 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 69 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+..+|||+ |||+||++|+++++++|.+||+||||||+|++||++|+++++.|.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GP 235 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 235 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCCh
Confidence 45799999 999999999999999999999999999999999999999999886
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.55 E-value=2.6e-15 Score=128.63 Aligned_cols=52 Identities=33% Similarity=0.464 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 71 ~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
.+|||++|||+||++|+++++++|++||+||||||+|++||++|+++++.|.
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GP 264 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGP 264 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCh
Confidence 4899999999999999999999999999999999999999999999999885
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.53 E-value=4.2e-15 Score=124.77 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhh-hhhcCCc
Q 044971 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE-LLARNGV 122 (153)
Q Consensus 70 G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e-~l~~~G~ 122 (153)
+.+||| +|||+||.+|+++++++|.+||||||+||+|++|+++|+ ++++.|.
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gP 216 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 216 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCh
Confidence 469999 899999999999999999999999999999999999999 4677775
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.53 E-value=5.4e-15 Score=125.62 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 71 EFPGDYGWDTAGLS-ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 71 ~~PGD~GfDPlGL~-~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
.+|||++|||+||. +|+++++++|.+||||||+||+|++|+++|+++++.|+
T Consensus 192 ~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gP 244 (267)
T PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGP 244 (267)
T ss_pred CCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCh
Confidence 58999999999996 48999999999999999999999999999999999886
No 21
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.49 E-value=1.4e-14 Score=125.82 Aligned_cols=51 Identities=31% Similarity=0.492 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 72 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 72 ~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+||+++|||+||++|++++++++.+||+||||||+|++|+++|+++++.|.
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GP 302 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGP 302 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCCh
Confidence 455556999999999999999999999999999999999999999999886
No 22
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.49 E-value=1.4e-14 Score=111.93 Aligned_cols=50 Identities=38% Similarity=0.519 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhh
Q 044971 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116 (153)
Q Consensus 67 ~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~ 116 (153)
+.++.+|||++|||+|+.+|++++++++.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789999999999999989999999999999999999999999999983
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.46 E-value=3.7e-14 Score=119.23 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 78 fDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
|||+||.+|+++++++|.+||||||+||+|++|+++|+++|++|.
T Consensus 182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGP 226 (244)
T PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGP 226 (244)
T ss_pred CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCH
Confidence 999999999999999999999999999999999999999999886
No 24
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.39 E-value=2.1e-13 Score=111.73 Aligned_cols=51 Identities=35% Similarity=0.470 Sum_probs=41.6
Q ss_pred CCCCCCCCCC--CCCCCC-CHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcC
Q 044971 70 GEFPGDYGWD--TAGLSA-DPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120 (153)
Q Consensus 70 G~~PGD~GfD--PlGL~~-dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~ 120 (153)
+++||||+++ ++|+.. |+|+.+++|++|||||||||+|++|+++||++++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5789965433 344432 78999999999999999999999999999999763
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.39 E-value=1.6e-13 Score=115.49 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 71 ~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
..||||+|||+||+. +++|++|||||||||+|++|+++|++++++|.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gP 189 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSP 189 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCCh
Confidence 468999999999952 57899999999999999999999999999885
No 26
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.34 E-value=4.9e-13 Score=112.81 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 72 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 72 ~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+||+. |||+||++++ +++++|||||||||+|++|+++|+++|+.|.
T Consensus 184 YPGG~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gP 229 (250)
T PLN00101 184 YPGGI-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGP 229 (250)
T ss_pred CCCCc-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCCh
Confidence 66664 9999998664 6899999999999999999999999999886
No 27
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.32 E-value=9.2e-13 Score=111.44 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCC---------CHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 72 FPGDYGWDTAGLSA---------DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 72 ~PGD~GfDPlGL~~---------dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+||+..|||+||++ |+++++++|.+||||||+||+|++|+++|. .+++|.
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p 249 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTP 249 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCc
Confidence 78887899999975 789999999999999999999999999999 566664
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.30 E-value=1.2e-12 Score=107.16 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=37.2
Q ss_pred CCCCCCC--CCHHHHHHHHHHHHhhcchhhhhhchhhhhhh
Q 044971 78 WDTAGLS--ADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116 (153)
Q Consensus 78 fDPlGL~--~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~ 116 (153)
|||+||+ .|+++++++|++|||||||||||++|+++||+
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 9999996 47899999999999999999999999999997
No 29
>PHA02337 putative high light inducible protein
Probab=98.15 E-value=1e-06 Score=54.50 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHhhcchhhhhhchhhhhhhhhcCCcc
Q 044971 94 RELEVIHCRWAMLGALGCVFPELLARNGVK 123 (153)
Q Consensus 94 r~~El~hGRlAMLa~~G~i~~e~l~~~G~~ 123 (153)
..+|..|||+||+|++..+..|++++++++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999998873
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.09 E-value=0.00016 Score=61.25 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 93 NRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 93 ~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+...|+.|||+||+|++-.++.|++++.|+
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gl 188 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGL 188 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcH
Confidence 456899999999999999999999999987
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=96.32 E-value=0.0016 Score=53.43 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcchhhhhhchhhhhhhhh-cCCc
Q 044971 89 TFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGV 122 (153)
Q Consensus 89 ~~~~~r~~El~hGRlAMLa~~G~i~~e~l~-~~G~ 122 (153)
+.+..+..|+-|||+||+|++-.++.|+++ ++|+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 445566779999999999999999999999 7876
Done!