Query 044971
Match_columns 153
No_of_seqs 213 out of 954
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.2E-39 7.5E-44 267.4 8.0 113 40-152 8-120 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.8E-30 6.2E-35 216.0 -0.2 94 47-150 5-141 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 6E-30 2E-34 215.4 1.9 86 46-134 57-142 (269)
4 2wsc_3 LHCA3, type II chloroph 99.9 1.5E-29 5.1E-34 213.6 2.2 99 48-150 51-157 (276)
5 2wsc_4 Chlorophyll A-B binding 99.9 1.8E-28 6.2E-33 204.5 2.4 86 46-134 45-131 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 1.8E-24 6.2E-29 179.6 4.7 88 53-149 45-133 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 2.5E-15 8.5E-20 125.0 3.1 51 71-122 172-222 (243)
8 2wsc_3 LHCA3, type II chloroph 99.5 1.6E-15 5.4E-20 128.1 1.2 54 69-122 200-253 (276)
9 2bhw_A Chlorophyll A-B binding 99.5 6.9E-15 2.3E-19 121.2 5.0 53 69-122 153-205 (232)
10 2wsc_2 LHCA2, type II chloroph 99.5 8.9E-15 3E-19 123.1 3.5 54 69-122 192-246 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.4 3.8E-14 1.3E-18 117.6 0.8 53 69-122 164-217 (241)
12 2wsc_4 Chlorophyll A-B binding 99.3 1.2E-12 4E-17 109.2 2.7 46 71-122 183-228 (251)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.2e-39 Score=267.40 Aligned_cols=113 Identities=91% Similarity=1.571 Sum_probs=105.2
Q ss_pred cccCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhc
Q 044971 40 KSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119 (153)
Q Consensus 40 ~~~~~~~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~ 119 (153)
|..+++|+||++||++|||||+.++|+||+|++||||||||+||++|+|+++|+|++|||||||||||++|+++||+++.
T Consensus 8 ~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp --CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 34556789999999999999888999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCCccccccceecccCCCcCCCCCCcccC
Q 044971 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152 (153)
Q Consensus 120 ~G~~~~~~~W~~aG~~~~~~~~~~ylg~~~l~~ 152 (153)
.|+.+.++.|+++|.++|.+++++|+++|.++|
T Consensus 88 ~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~ 120 (232)
T 2bhw_A 88 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120 (232)
T ss_dssp TTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEE
T ss_pred CCcCCcccccccccchhccccchhcccCcchhh
Confidence 898888899999999999999999999998775
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.95 E-value=1.8e-30 Score=215.97 Aligned_cols=94 Identities=39% Similarity=0.707 Sum_probs=46.7
Q ss_pred CCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------------------------------------
Q 044971 47 PWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET------------------------------------- 89 (153)
Q Consensus 47 ~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~------------------------------------- 89 (153)
.|+++||++|++ +.++|+||||++||||||||+||+++||.
T Consensus 5 ~~~~~~r~~w~p--g~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccC--CCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 467899999993 67999999999999999999999999873
Q ss_pred ------HHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCccccccceecccCCCcCCCCCCcc
Q 044971 90 ------FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150 (153)
Q Consensus 90 ------~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~W~~aG~~~~~~~~~~ylg~~~l 150 (153)
++|+|++||+||||||||++||++||+++ |+ +||++|+++++ ++++|+|+|..
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g~-----~W~~aG~~~~~-~g~~y~g~p~~ 141 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--GI-----TWQDAGKVELI-EGSSYLGQPLP 141 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SC-----CTTTHHHHHHH-SCEEETTEEEC
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--Cc-----ccccccccccc-cccccccCccc
Confidence 78999999999999999999999999986 33 69999998775 46899998763
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.95 E-value=6e-30 Score=215.38 Aligned_cols=86 Identities=40% Similarity=0.832 Sum_probs=45.1
Q ss_pred CCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccC
Q 044971 46 SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125 (153)
Q Consensus 46 ~~w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~ 125 (153)
..+|++||++|++ +.++|+||+|++||||||||+||++|||+++++|++|||||||||||++|+++||++++.|+. .
T Consensus 57 ~~~~~~~r~~wlp--g~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-~ 133 (269)
T 2wsc_2 57 CTVAEPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-N 133 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS-S
T ss_pred ecccCCCcccccC--CCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc-c
Confidence 3589999999994 368999999999999999999999999999999999999999999999999999999988874 5
Q ss_pred Cccccccce
Q 044971 126 EAVWFKAGA 134 (153)
Q Consensus 126 ~~~W~~aG~ 134 (153)
.+.||++|.
T Consensus 134 ~p~w~~aG~ 142 (269)
T 2wsc_2 134 TPSWYTAGE 142 (269)
T ss_dssp CCCCCSTTS
T ss_pred Cccccccch
Confidence 678999875
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.95 E-value=1.5e-29 Score=213.58 Aligned_cols=99 Identities=39% Similarity=0.670 Sum_probs=52.4
Q ss_pred CccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH------HHHHHHHHhhcchhhhhhchhhhhhhhhcCC
Q 044971 48 WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF------AKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (153)
Q Consensus 48 w~g~dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~------~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G 121 (153)
+||+||++|+ |+ .++|+||+|++||||||||+|| .||+++ +++|++||+||||||||++|++++|++++.|
T Consensus 51 ~~g~~R~~wl-P~-~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 51 KQGSDRPLWF-AS-KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred ccCCCccccC-CC-CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 5999999999 64 6999999999999999999999 688999 9999999999999999999999999999988
Q ss_pred cccCC-c-cccccceecccCCCcCCCCCCcc
Q 044971 122 VKFGE-A-VWFKAGAQIFSEGGLDYLGNPSL 150 (153)
Q Consensus 122 ~~~~~-~-~W~~aG~~~~~~~~~~ylg~~~l 150 (153)
+.+.+ + .|+++|+ |+.++.++|++++..
T Consensus 128 ~~~~~~p~~w~~~g~-ip~aG~~~~~~~~~~ 157 (276)
T 2wsc_3 128 LIPQETALPWFRTGF-IPPAGTYNYWADSYT 157 (276)
T ss_dssp CCCCSSCCSSSSCCC-C-----CCCSCCCCS
T ss_pred cccccCcchhhhhhc-ccchhHHHHhccchH
Confidence 86542 3 4999887 777888899998753
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.94 E-value=1.8e-28 Score=204.49 Aligned_cols=86 Identities=35% Similarity=0.705 Sum_probs=47.2
Q ss_pred CCCccC-CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCccc
Q 044971 46 SPWYGL-DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (153)
Q Consensus 46 ~~w~g~-dr~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~ 124 (153)
..+|+| ||++|++ +.++|+||+|++||||||||+||++|||+++++|++||+||||||||++|+++||++++.|+.
T Consensus 45 ~~~~~~~~r~~~~p--g~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLP--GLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccC--CCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 358999 8999995 368999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCccccccce
Q 044971 125 GEAVWFKAGA 134 (153)
Q Consensus 125 ~~~~W~~aG~ 134 (153)
..+.||++|.
T Consensus 122 ~~p~w~~aG~ 131 (251)
T 2wsc_4 122 NVPKWYAAGK 131 (251)
T ss_dssp CCCCCSCCCS
T ss_pred CCccccccch
Confidence 5678999875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.89 E-value=1.8e-24 Score=179.60 Aligned_cols=88 Identities=41% Similarity=0.822 Sum_probs=58.9
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCcccCCcccccc
Q 044971 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132 (153)
Q Consensus 53 r~~~lgp~~~~~p~~L~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~~~~~~~W~~a 132 (153)
|.+|+ |+ .++|+||+|++||||||||+||++|+|+++++|++|||||||||||++|+++||+++. +.|+++
T Consensus 45 ~~~w~-P~-~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~-------~~~~~a 115 (241)
T 2wsc_1 45 AAHWM-PG-EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY-------GNWVKA 115 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC-------C-----
T ss_pred ccccC-CC-CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC-------Cccccc
Confidence 34566 33 5899999999999999999999999999999999999999999999999999999753 358777
Q ss_pred cee-cccCCCcCCCCCCc
Q 044971 133 GAQ-IFSEGGLDYLGNPS 149 (153)
Q Consensus 133 G~~-~~~~~~~~ylg~~~ 149 (153)
+.. .+.++..+|+++|.
T Consensus 116 ~~~~~~~~g~a~~~~~~~ 133 (241)
T 2wsc_1 116 QEWAALPGGQATYLGNPV 133 (241)
T ss_dssp CCCCSCSSCSSCCSSSCS
T ss_pred cchhccCCcchhhhcCcc
Confidence 643 45567778988763
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.53 E-value=2.5e-15 Score=125.01 Aligned_cols=51 Identities=33% Similarity=0.547 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 71 ~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
.+|||+ |||+||++|+++++++|.+||+|||+||+|++|+++||++++.|.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 589999 999999999999999999999999999999999999999999886
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.52 E-value=1.6e-15 Score=128.08 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 69 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+..+|||++|||+||.+|+++++++|++||+||||||||++|+++||++++.|+
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 446899999999999988888999999999999999999999999999999886
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.52 E-value=6.9e-15 Score=121.21 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 69 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+..+|||+ |||+||.+|+++++++|.+||+|||+||+|++|+++||++++.|+
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~ 205 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 205 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCS
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCCh
Confidence 45699998 999999999999999999999999999999999999999999886
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.49 E-value=8.9e-15 Score=123.10 Aligned_cols=54 Identities=28% Similarity=0.499 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 69 TGEFPGDYGWDTAGLS-ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 69 ~G~~PGD~GfDPlGL~-~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
+..+|||++|||+||. .|+|+++++|.+||+||||||||++|+++||++++.|+
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 246 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 246 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCS
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCCh
Confidence 3478999999999997 47888999999999999999999999999999999886
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.39 E-value=3.8e-14 Score=117.61 Aligned_cols=53 Identities=25% Similarity=0.479 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhh-hhhcCCc
Q 044971 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE-LLARNGV 122 (153)
Q Consensus 69 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e-~l~~~G~ 122 (153)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++|| +++++|+
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gp 217 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 217 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCch
Confidence 3578999 599999999999999999999999999999999999999 5788875
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.27 E-value=1.2e-12 Score=109.17 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcchhhhhhchhhhhhhhhcCCc
Q 044971 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122 (153)
Q Consensus 71 ~~PGD~GfDPlGL~~dpe~~~~~r~~El~hGRlAMLa~~G~i~~e~l~~~G~ 122 (153)
.+|||+ |||+||.+ ++++|.+||||||+ |+|++|+++||++++.|.
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gP 228 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGP 228 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccH
Confidence 479998 99999964 67899999999999 999999999999999886
Done!