BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044972
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ TGNSILGR+ F S + TK CE + + K+ ++V V+DTP I FD+
Sbjct: 43 SATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGI---FDTEVPNAET 98
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
SKEI++CI + G HA+L+V + R++EEE A + FG++ + I++FTR
Sbjct: 99 SKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGERARSFXILIFTRKDD 157
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDA 171
E P+ ++++ + +R +NK A
Sbjct: 158 LGDTNLHDYLR---EAPEDIQDLXDIFGDRYCALNNKATGA 195
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ TGNSILG+R F S++G++ T+ C + D V V+DTP I S D
Sbjct: 35 SATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDIFSSQVSKTDPG-- 91
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
+E C ++ G HA+L+V + RF+ ++ A+ + +FG+ V +M++VFTR
Sbjct: 92 CEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
+ L+E++ C R FDN+
Sbjct: 151 LAGGSLHDYVSNTEN--RALRELVAECGGRVCAFDNR 185
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ GNSIL ++AF+SK+GS TKTC + + ++V +IDTP +F E +
Sbjct: 16 SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 71
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+ + IV+FT
Sbjct: 72 YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 130
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
K L +++ C R F+N+
Sbjct: 131 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNR 165
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ GNSIL ++AF+SK+GS TKTC + + ++V +IDTP +F E +
Sbjct: 36 SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 91
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+ + IV+FT
Sbjct: 92 YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKT 168
K L +++ C R F+N+
Sbjct: 151 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNRA 186
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ GNSIL ++AF+SK+GS TKTC + + ++V +IDTP +F E +
Sbjct: 19 SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 74
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+ + IV+FT
Sbjct: 75 YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 133
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
K L +++ C R F+N+
Sbjct: 134 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNR 168
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
+ GNSIL ++AF+SK+GS TKTC + + ++V +IDTP F E +
Sbjct: 36 SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DXFSWKDHCEAL 91
Query: 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+ + IV+FT
Sbjct: 92 YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAXGHTIVLFTHKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
K L +++ C R F+N+
Sbjct: 151 LNGGSLXDYXHDSDN--KALSKLVAACGGRICAFNNR 185
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
Length = 655
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 188 FAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTT 247
F + K+ TK E+ L+G+ + +++ K+ + Q+K E + +L+E
Sbjct: 537 FPQFYKKLTK------EIKDLEGHYVNAPDKTEDENKQILQAQIK---EKIVEELEEQHQ 587
Query: 248 RLEQQLAEEHL--------------ARLKAEGAAQLAQIKSNEEIF 279
+E Q EH+ A + +GA+ LAQIK EE+F
Sbjct: 588 NIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELF 633
>pdb|2WUJ|A Chain A, Diviva N-Terminal Domain
pdb|2WUJ|B Chain B, Diviva N-Terminal Domain
Length = 57
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 207 SLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRL 249
S +GY + E++E Q++K YE L++ E+ E+K+ E R+
Sbjct: 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTEL-EAKVNELDERI 57
>pdb|2I2X|A Chain A, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|C Chain C, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|E Chain E, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|G Chain G, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|I Chain I, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|K Chain K, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|M Chain M, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|O Chain O, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 461
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 101 EEGAAIHSLESLFGKKVFDYMIV 123
E GA + S+ES+ GK+VFDY ++
Sbjct: 155 ENGADLLSVESMGGKEVFDYAVL 177
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The
Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1)
Length = 224
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 199 RDQQVEVDSLKGYSKREISEL-----KEQM---------------KKSYEDQLKRSIEMV 238
R+Q+ +D+L + R +EL KE+ KKSY +L R +E
Sbjct: 113 RNQERHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQK 172
Query: 239 ESKLKETTTRLEQQLAEEHLARLKAEG 265
E +K EQ L E H ARL E
Sbjct: 173 EESIKAVQEIAEQLLLENHPARLTIEA 199
>pdb|2WUK|A Chain A, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|B Chain B, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|C Chain C, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|D Chain D, Diviva N-Terminal Domain, F17a Mutant
Length = 57
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 207 SLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRL 249
S +GY + E++E Q++K YE L++ E+ E+K+ E R+
Sbjct: 16 SARGYDEDEVNEFLAQVRKDYEIVLRKKTEL-EAKVNELDERI 57
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 184 IDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLK 243
++E +LK +L + E+DSLK + I + +++KS ED L+ KLK
Sbjct: 27 VEEEIQDLKAVWVELSNTWQEIDSLKETAWSAI--IPRKVRKSLEDTLQ--------KLK 76
Query: 244 ETTTRLEQQLAEEH---LARLKAEGAAQLAQIKS 274
R+ Q A +H L ++ +G A + + S
Sbjct: 77 NLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHS 110
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 184 IDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLK 243
++E +LK +L + E+DSLK + I + +++KS ED L+ KLK
Sbjct: 27 VEEEIQDLKAVWVELSNTWQEIDSLKETAWSAI--IPRKVRKSLEDTLQ--------KLK 76
Query: 244 ETTTRLEQQLAEEH---LARLKAEGAAQLAQIKS 274
R+ Q A +H L ++ +G A + + S
Sbjct: 77 NLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHS 110
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 190 ELKKRATKLRDQQVEVDSLKGYSKREISELKEQ----------MKKSYEDQLKRSIEMVE 239
EL + T+ + + D K +++ +SELKEQ + + DQ K E +E
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Query: 240 SKLKETTTRLEQQLAEEHL 258
KL E T +LE L +E L
Sbjct: 1059 KKLVEETKQLELDLNDERL 1077
>pdb|3VU1|A Chain A, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
pdb|3VU1|B Chain B, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
Length = 506
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 181 QPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQL 231
+P++D F K KLR + E+ K IS KE+++K + D+L
Sbjct: 414 EPHMDTFFITKLKEGIKLRPGENEIVVNAEMPKNAISSYKEKLEKEHGDKL 464
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---------AKDGIHAVLIVFSVRNRF 98
V+N ID P SAD + V K+I + +G+ AK+GI I+ ++ NR
Sbjct: 131 VINKIDLP--------SADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
Query: 99 SEEEGAAIHSLESLFGKKVFD 119
+G L++L +D
Sbjct: 183 PPPKGDPQKPLKALIFDSYYD 203
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---------AKDGIHAVLIVFSVRNRF 98
V+N ID P SAD + V K+I + +G+ AK+GI I+ ++ NR
Sbjct: 131 VINKIDLP--------SADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
Query: 99 SEEEGAAIHSLESLFGKKVFD 119
+G L++L +D
Sbjct: 183 PPPKGDPQKPLKALIFDSYYD 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,649,561
Number of Sequences: 62578
Number of extensions: 274263
Number of successful extensions: 1067
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 84
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)