Query 044972
Match_columns 307
No_of_seqs 296 out of 1532
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 3.4E-50 7.4E-55 362.3 14.4 184 3-193 6-203 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 2.2E-43 4.7E-48 312.6 18.8 179 2-188 5-196 (196)
3 TIGR00993 3a0901s04IAP86 chlor 100.0 1.8E-30 3.9E-35 264.4 16.9 157 2-165 123-287 (763)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 2.3E-29 5E-34 239.0 13.7 150 2-159 43-193 (313)
5 cd01853 Toc34_like Toc34-like 99.9 5.8E-23 1.3E-27 190.4 13.0 125 3-134 37-165 (249)
6 COG1159 Era GTPase [General fu 99.6 2.6E-15 5.6E-20 141.4 13.7 117 3-133 12-129 (298)
7 PF01926 MMR_HSR1: 50S ribosom 99.6 8.9E-15 1.9E-19 118.5 12.7 112 3-127 5-116 (116)
8 PRK00089 era GTPase Era; Revie 99.6 8.1E-14 1.8E-18 130.6 15.8 116 3-132 11-127 (292)
9 cd01894 EngA1 EngA1 subfamily. 99.6 6E-14 1.3E-18 116.6 13.1 119 2-133 2-120 (157)
10 COG1160 Predicted GTPases [Gen 99.5 4.1E-14 8.9E-19 139.7 13.0 119 3-133 9-127 (444)
11 PF02421 FeoB_N: Ferrous iron 99.5 1E-13 2.2E-18 120.5 11.3 140 3-170 6-147 (156)
12 cd04163 Era Era subfamily. Er 99.5 4E-13 8.6E-18 111.4 13.0 117 3-132 9-125 (168)
13 TIGR03594 GTPase_EngA ribosome 99.5 9.3E-13 2E-17 129.4 14.8 119 2-133 4-122 (429)
14 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.6E-12 3.5E-17 107.7 13.9 117 2-133 6-122 (157)
15 TIGR00436 era GTP-binding prot 99.5 1.1E-12 2.4E-17 122.2 13.6 117 3-133 6-122 (270)
16 TIGR03598 GTPase_YsxC ribosome 99.4 4.1E-12 9E-17 110.5 16.1 145 3-168 24-174 (179)
17 cd01850 CDC_Septin CDC/Septin. 99.4 4.1E-12 8.9E-17 119.5 16.9 150 2-169 9-187 (276)
18 cd01895 EngA2 EngA2 subfamily. 99.4 2.6E-12 5.7E-17 107.8 13.1 122 2-133 7-128 (174)
19 PRK00093 GTP-binding protein D 99.4 2.5E-12 5.5E-17 126.8 14.0 118 2-132 6-123 (435)
20 PRK15494 era GTPase Era; Provi 99.4 8.5E-12 1.9E-16 120.4 16.1 116 2-131 57-173 (339)
21 cd01879 FeoB Ferrous iron tran 99.4 7.3E-12 1.6E-16 104.5 13.6 115 3-133 2-116 (158)
22 COG1160 Predicted GTPases [Gen 99.4 1.7E-12 3.6E-17 128.4 10.2 147 3-165 184-332 (444)
23 cd01881 Obg_like The Obg-like 99.4 4.2E-12 9.2E-17 107.8 11.0 121 3-133 2-135 (176)
24 cd00880 Era_like Era (E. coli 99.4 1.7E-11 3.7E-16 99.8 13.6 118 3-133 2-119 (163)
25 PRK00093 GTP-binding protein D 99.4 1.2E-11 2.7E-16 121.9 15.1 121 3-133 179-299 (435)
26 cd01897 NOG NOG1 is a nucleola 99.3 2.3E-11 4.9E-16 103.1 12.7 120 2-133 5-128 (168)
27 PRK00454 engB GTP-binding prot 99.3 1.4E-10 2.9E-15 101.1 17.2 118 3-133 30-150 (196)
28 cd04104 p47_IIGP_like p47 (47- 99.3 1.8E-11 3.8E-16 108.9 11.2 114 2-133 6-122 (197)
29 TIGR03594 GTPase_EngA ribosome 99.3 4.3E-11 9.4E-16 117.6 14.6 120 2-131 177-296 (429)
30 PRK03003 GTP-binding protein D 99.3 4.3E-11 9.3E-16 120.1 14.0 117 3-132 44-160 (472)
31 cd01876 YihA_EngB The YihA (En 99.3 3E-10 6.5E-15 94.4 16.5 147 3-170 5-157 (170)
32 cd04171 SelB SelB subfamily. 99.3 2.8E-10 6.1E-15 95.3 15.4 111 3-133 6-119 (164)
33 COG0218 Predicted GTPase [Gene 99.3 1.2E-10 2.7E-15 104.6 13.8 116 3-133 30-150 (200)
34 cd04166 CysN_ATPS CysN_ATPS su 99.2 8.2E-11 1.8E-15 105.4 12.5 164 3-190 5-200 (208)
35 PRK09518 bifunctional cytidyla 99.2 9.7E-11 2.1E-15 123.1 14.4 118 2-132 280-397 (712)
36 cd01898 Obg Obg subfamily. Th 99.2 1.4E-10 3.1E-15 98.2 11.9 122 2-133 5-129 (170)
37 cd00882 Ras_like_GTPase Ras-li 99.2 2.1E-10 4.6E-15 91.8 12.2 141 3-169 2-145 (157)
38 COG0486 ThdF Predicted GTPase 99.2 1.1E-10 2.5E-15 115.7 12.2 117 3-133 223-339 (454)
39 PF00735 Septin: Septin; Inte 99.2 1.1E-10 2.4E-15 110.2 11.3 152 2-170 9-187 (281)
40 PRK12298 obgE GTPase CgtA; Rev 99.2 1.9E-10 4.2E-15 113.2 13.0 120 2-133 164-290 (390)
41 cd01878 HflX HflX subfamily. 99.2 2.9E-10 6.3E-15 100.4 12.9 120 3-133 47-168 (204)
42 TIGR03156 GTP_HflX GTP-binding 99.2 2.6E-10 5.6E-15 110.8 13.6 123 2-133 194-316 (351)
43 COG3596 Predicted GTPase [Gene 99.2 7.1E-11 1.5E-15 110.7 9.1 142 2-156 44-195 (296)
44 cd00881 GTP_translation_factor 99.2 2.5E-10 5.5E-15 97.7 11.6 112 2-133 4-129 (189)
45 cd01884 EF_Tu EF-Tu subfamily. 99.2 2.9E-10 6.4E-15 101.7 12.4 132 3-159 8-153 (195)
46 PRK03003 GTP-binding protein D 99.2 3.5E-10 7.6E-15 113.6 14.1 119 3-133 217-337 (472)
47 COG5019 CDC3 Septin family pro 99.2 1.5E-08 3.3E-13 98.2 24.3 152 2-169 28-207 (373)
48 TIGR00450 mnmE_trmE_thdF tRNA 99.2 4.9E-10 1.1E-14 112.0 14.3 114 2-131 208-323 (442)
49 PRK05291 trmE tRNA modificatio 99.2 3.5E-10 7.6E-15 113.2 13.0 115 3-133 221-336 (449)
50 PRK11058 GTPase HflX; Provisio 99.1 8.7E-10 1.9E-14 109.8 14.1 123 2-133 202-324 (426)
51 COG1084 Predicted GTPase [Gene 99.1 8.3E-10 1.8E-14 105.6 12.9 118 2-133 173-295 (346)
52 PRK09518 bifunctional cytidyla 99.1 1.1E-09 2.5E-14 115.1 15.0 119 3-133 456-576 (712)
53 cd00154 Rab Rab family. Rab G 99.1 2.8E-09 6.1E-14 87.6 14.2 139 2-168 5-146 (159)
54 PF00350 Dynamin_N: Dynamin fa 99.1 3.9E-10 8.4E-15 96.2 9.2 109 3-127 4-167 (168)
55 smart00053 DYNc Dynamin, GTPas 99.1 3.7E-09 8E-14 97.9 16.1 107 47-170 125-235 (240)
56 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 1.5E-09 3.3E-14 91.6 12.2 109 3-132 6-116 (168)
57 CHL00071 tufA elongation facto 99.1 8E-10 1.7E-14 109.2 11.7 132 3-159 18-163 (409)
58 cd01896 DRG The developmentall 99.0 4.1E-09 8.9E-14 96.6 13.9 83 3-95 6-88 (233)
59 cd01861 Rab6 Rab6 subfamily. 99.0 2E-08 4.4E-13 84.2 16.7 138 2-168 5-146 (161)
60 PRK12299 obgE GTPase CgtA; Rev 99.0 4.3E-09 9.2E-14 101.8 13.9 123 2-133 163-286 (335)
61 cd04119 RJL RJL (RabJ-Like) su 99.0 9.2E-09 2E-13 86.2 14.0 140 3-168 6-151 (168)
62 PRK12297 obgE GTPase CgtA; Rev 99.0 1.8E-08 4E-13 100.3 15.8 119 2-130 163-286 (424)
63 PRK09554 feoB ferrous iron tra 99.0 1.2E-08 2.6E-13 108.3 15.2 144 2-169 8-153 (772)
64 smart00175 RAB Rab subfamily o 99.0 4.4E-08 9.5E-13 82.1 15.6 138 2-168 5-146 (164)
65 cd04157 Arl6 Arl6 subfamily. 98.9 1.6E-08 3.5E-13 84.7 12.8 113 3-133 5-119 (162)
66 cd01889 SelB_euk SelB subfamil 98.9 9E-09 2E-13 90.4 11.8 111 3-133 6-135 (192)
67 PRK04213 GTP-binding protein; 98.9 2E-08 4.2E-13 88.4 13.8 116 3-133 15-145 (201)
68 cd01886 EF-G Elongation factor 98.9 1E-08 2.3E-13 96.2 12.5 110 3-132 5-130 (270)
69 cd04160 Arfrp1 Arfrp1 subfamil 98.9 1.8E-08 3.9E-13 85.2 12.8 114 3-133 5-122 (167)
70 TIGR02729 Obg_CgtA Obg family 98.9 1.2E-08 2.6E-13 98.4 12.9 119 3-133 163-288 (329)
71 PRK12735 elongation factor Tu; 98.9 9E-09 2E-13 101.3 12.3 132 2-158 17-162 (396)
72 cd04159 Arl10_like Arl10-like 98.9 3.5E-08 7.6E-13 81.2 13.7 110 3-133 5-116 (159)
73 cd04154 Arl2 Arl2 subfamily. 98.9 1.6E-08 3.6E-13 86.8 12.1 109 3-133 20-130 (173)
74 PRK00049 elongation factor Tu; 98.9 1.1E-08 2.3E-13 100.9 12.2 131 3-158 18-162 (396)
75 cd01863 Rab18 Rab18 subfamily. 98.9 1.2E-08 2.5E-13 85.9 10.8 112 2-131 5-119 (161)
76 PF00009 GTP_EFTU: Elongation 98.9 8.7E-09 1.9E-13 90.5 10.4 109 3-131 9-135 (188)
77 PLN03127 Elongation factor Tu; 98.9 1.4E-08 3E-13 101.8 12.6 131 3-158 67-211 (447)
78 cd04161 Arl2l1_Arl13_like Arl2 98.9 4E-08 8.6E-13 84.5 13.8 140 2-168 4-145 (167)
79 cd01851 GBP Guanylate-binding 98.9 1.3E-08 2.9E-13 92.9 11.4 102 2-111 12-116 (224)
80 cd01866 Rab2 Rab2 subfamily. 98.9 1.9E-08 4.1E-13 86.0 11.7 113 2-133 9-124 (168)
81 cd04113 Rab4 Rab4 subfamily. 98.9 3.7E-08 8.1E-13 82.9 13.3 140 2-169 5-147 (161)
82 KOG1423 Ras-like GTPase ERA [C 98.9 7.1E-09 1.5E-13 98.7 9.7 121 3-133 78-200 (379)
83 PRK12317 elongation factor 1-a 98.9 9.6E-09 2.1E-13 101.7 11.2 132 3-158 12-174 (425)
84 cd04168 TetM_like Tet(M)-like 98.9 2.2E-08 4.8E-13 92.2 12.7 133 3-166 5-153 (237)
85 cd04140 ARHI_like ARHI subfami 98.9 1.6E-08 3.5E-13 86.1 11.1 114 3-132 7-122 (165)
86 cd01891 TypA_BipA TypA (tyrosi 98.9 1.4E-08 3E-13 89.4 10.9 111 3-133 8-132 (194)
87 KOG2655 Septin family protein 98.9 6.8E-07 1.5E-11 87.1 23.1 151 2-168 26-201 (366)
88 TIGR00231 small_GTP small GTP- 98.9 2.7E-08 5.7E-13 80.9 11.5 113 2-133 6-123 (161)
89 PRK12296 obgE GTPase CgtA; Rev 98.9 2.6E-08 5.7E-13 100.9 13.6 121 3-133 165-299 (500)
90 cd00878 Arf_Arl Arf (ADP-ribos 98.9 5.4E-08 1.2E-12 81.7 13.3 109 3-133 5-115 (158)
91 PRK10512 selenocysteinyl-tRNA- 98.9 5E-08 1.1E-12 101.3 15.6 112 3-133 6-119 (614)
92 cd01888 eIF2_gamma eIF2-gamma 98.9 3.9E-08 8.4E-13 87.8 12.9 113 3-133 6-152 (203)
93 cd04170 EF-G_bact Elongation f 98.9 3E-08 6.6E-13 92.1 12.6 111 3-133 5-131 (268)
94 cd04123 Rab21 Rab21 subfamily. 98.9 2.9E-08 6.3E-13 82.7 11.2 113 2-133 5-120 (162)
95 TIGR00437 feoB ferrous iron tr 98.9 5.8E-08 1.3E-12 100.4 15.8 138 4-168 1-139 (591)
96 PRK12736 elongation factor Tu; 98.9 2.5E-08 5.4E-13 98.2 12.4 131 3-158 18-162 (394)
97 cd04155 Arl3 Arl3 subfamily. 98.9 7.4E-08 1.6E-12 82.0 13.9 109 3-133 20-130 (173)
98 cd04112 Rab26 Rab26 subfamily. 98.9 1.3E-07 2.9E-12 82.9 15.7 140 2-168 5-147 (191)
99 cd04138 H_N_K_Ras_like H-Ras/N 98.8 5.5E-08 1.2E-12 81.0 12.6 112 2-132 6-120 (162)
100 cd00876 Ras Ras family. The R 98.8 2.2E-08 4.7E-13 83.3 10.1 111 3-132 5-118 (160)
101 cd04118 Rab24 Rab24 subfamily. 98.8 1.3E-07 2.9E-12 82.4 15.5 112 3-133 6-120 (193)
102 cd01860 Rab5_related Rab5-rela 98.8 1.5E-07 3.2E-12 79.2 15.1 137 2-168 6-147 (163)
103 cd00879 Sar1 Sar1 subfamily. 98.8 7.5E-08 1.6E-12 83.7 13.7 108 3-132 25-134 (190)
104 cd04145 M_R_Ras_like M-Ras/R-R 98.8 2.2E-08 4.7E-13 84.1 9.9 112 2-132 7-121 (164)
105 PRK15467 ethanolamine utilizat 98.8 4E-08 8.6E-13 84.5 11.7 125 2-169 6-132 (158)
106 cd01890 LepA LepA subfamily. 98.8 1.6E-08 3.4E-13 86.7 9.1 111 3-132 6-133 (179)
107 COG0370 FeoB Fe2+ transport sy 98.8 1.7E-08 3.7E-13 104.2 10.9 136 3-166 9-146 (653)
108 cd04156 ARLTS1 ARLTS1 subfamil 98.8 5.6E-08 1.2E-12 81.6 12.1 109 3-132 5-115 (160)
109 cd01864 Rab19 Rab19 subfamily. 98.8 9.4E-08 2E-12 81.1 13.6 113 2-133 8-123 (165)
110 cd04142 RRP22 RRP22 subfamily. 98.8 5.3E-08 1.2E-12 86.9 12.5 122 2-132 5-130 (198)
111 cd01868 Rab11_like Rab11-like. 98.8 6.5E-08 1.4E-12 81.8 12.4 112 2-132 8-122 (165)
112 TIGR00475 selB selenocysteine- 98.8 1E-07 2.3E-12 98.4 16.1 112 2-133 5-118 (581)
113 cd01862 Rab7 Rab7 subfamily. 98.8 3.2E-07 6.9E-12 77.6 16.3 141 2-168 5-151 (172)
114 cd00157 Rho Rho (Ras homology) 98.8 2.5E-08 5.4E-13 84.3 9.4 111 2-133 5-119 (171)
115 PLN03126 Elongation factor Tu; 98.8 2.8E-08 6E-13 100.4 11.1 131 3-158 87-231 (478)
116 smart00178 SAR Sar1p-like memb 98.8 1.4E-07 3E-12 82.5 14.2 107 3-131 23-131 (184)
117 smart00174 RHO Rho (Ras homolo 98.8 7.5E-08 1.6E-12 82.1 12.1 144 3-168 4-156 (174)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 1.2E-07 2.7E-12 81.8 13.6 108 3-132 21-130 (174)
119 PRK05506 bifunctional sulfate 98.8 3.5E-08 7.5E-13 102.6 11.8 133 3-159 30-193 (632)
120 TIGR00485 EF-Tu translation el 98.8 4.8E-08 1E-12 96.0 12.1 131 3-158 18-162 (394)
121 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.8 2.7E-07 5.8E-12 78.2 14.8 139 2-168 7-148 (166)
122 TIGR02528 EutP ethanolamine ut 98.8 3E-08 6.5E-13 82.1 8.6 98 2-132 5-102 (142)
123 cd04151 Arl1 Arl1 subfamily. 98.8 1.5E-07 3.2E-12 79.5 12.8 109 3-133 5-115 (158)
124 KOG1191 Mitochondrial GTPase [ 98.8 4.1E-08 8.8E-13 98.2 10.6 123 3-133 274-404 (531)
125 cd04115 Rab33B_Rab33A Rab33B/R 98.8 1.7E-07 3.7E-12 80.3 13.1 115 2-133 7-124 (170)
126 cd04136 Rap_like Rap-like subf 98.7 1.5E-07 3.2E-12 78.9 12.2 112 2-132 6-120 (163)
127 cd04124 RabL2 RabL2 subfamily. 98.7 5.4E-08 1.2E-12 82.8 9.5 106 3-130 6-116 (161)
128 cd04158 ARD1 ARD1 subfamily. 98.7 1.7E-07 3.7E-12 80.4 12.6 108 2-131 4-113 (169)
129 cd04169 RF3 RF3 subfamily. Pe 98.7 1.6E-07 3.5E-12 88.0 13.3 110 3-132 8-137 (267)
130 cd04106 Rab23_lke Rab23-like s 98.7 2.7E-07 5.8E-12 77.5 13.2 139 2-168 5-147 (162)
131 TIGR02034 CysN sulfate adenyly 98.7 8.9E-08 1.9E-12 94.7 11.9 113 2-133 5-148 (406)
132 smart00173 RAS Ras subfamily o 98.7 1.8E-07 3.8E-12 78.9 12.0 138 3-168 6-146 (164)
133 PLN03118 Rab family protein; P 98.7 1.5E-07 3.2E-12 84.0 12.1 113 2-132 19-134 (211)
134 cd01900 YchF YchF subfamily. 98.7 5.7E-08 1.2E-12 91.7 9.8 84 2-94 3-102 (274)
135 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 1.5E-07 3.2E-12 82.3 11.7 113 2-132 8-123 (183)
136 cd01867 Rab8_Rab10_Rab13_like 98.7 1.8E-07 3.8E-12 79.8 11.9 113 2-133 8-123 (167)
137 PRK05124 cysN sulfate adenylyl 98.7 1.1E-07 2.4E-12 95.9 12.4 111 3-132 33-174 (474)
138 cd04132 Rho4_like Rho4-like su 98.7 3.1E-07 6.7E-12 79.6 13.6 111 3-133 6-120 (187)
139 cd04101 RabL4 RabL4 (Rab-like4 98.7 2.6E-07 5.7E-12 77.8 12.7 112 3-133 6-122 (164)
140 cd04125 RabA_like RabA-like su 98.7 1.2E-07 2.7E-12 82.6 11.0 112 3-133 6-120 (188)
141 cd04127 Rab27A Rab27a subfamil 98.7 7.7E-07 1.7E-11 76.4 15.8 138 2-166 9-159 (180)
142 cd04122 Rab14 Rab14 subfamily. 98.7 4.1E-07 8.9E-12 77.3 13.9 136 3-168 8-148 (166)
143 PF05049 IIGP: Interferon-indu 98.7 2.1E-07 4.5E-12 91.3 13.6 110 3-130 41-153 (376)
144 cd00877 Ran Ran (Ras-related n 98.7 3.2E-07 7E-12 78.7 13.2 108 3-131 6-117 (166)
145 PRK00007 elongation factor G; 98.7 1.2E-07 2.5E-12 99.8 12.5 111 3-133 16-142 (693)
146 cd04144 Ras2 Ras2 subfamily. 98.7 1.6E-07 3.4E-12 82.4 11.2 140 2-168 4-147 (190)
147 cd04148 RGK RGK subfamily. Th 98.7 1.3E-07 2.8E-12 85.7 10.9 113 2-133 5-121 (221)
148 cd04139 RalA_RalB RalA/RalB su 98.7 1.6E-07 3.5E-12 78.5 10.6 111 2-132 5-119 (164)
149 cd04165 GTPBP1_like GTPBP1-lik 98.7 2.9E-07 6.3E-12 84.1 12.9 74 42-133 80-153 (224)
150 cd04146 RERG_RasL11_like RERG/ 98.7 8.7E-08 1.9E-12 81.3 8.6 139 3-167 5-146 (165)
151 cd01883 EF1_alpha Eukaryotic e 98.7 3E-07 6.5E-12 83.1 12.3 132 3-158 5-174 (219)
152 cd01893 Miro1 Miro1 subfamily. 98.7 2.6E-07 5.6E-12 78.8 11.2 110 3-133 6-118 (166)
153 cd04147 Ras_dva Ras-dva subfam 98.7 3E-07 6.5E-12 81.3 11.9 111 3-132 5-118 (198)
154 cd01865 Rab3 Rab3 subfamily. 98.7 3.9E-07 8.4E-12 77.6 12.1 112 3-133 7-121 (165)
155 cd04110 Rab35 Rab35 subfamily. 98.7 5.7E-07 1.2E-11 79.6 13.7 113 2-133 11-125 (199)
156 cd04149 Arf6 Arf6 subfamily. 98.7 4E-07 8.7E-12 78.5 12.4 107 3-131 15-123 (168)
157 PRK09866 hypothetical protein; 98.7 4.7E-05 1E-09 79.3 29.2 74 47-132 230-303 (741)
158 PRK12739 elongation factor G; 98.7 1.3E-07 2.8E-12 99.4 10.9 111 3-133 14-140 (691)
159 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 4.1E-07 8.9E-12 78.0 12.2 111 2-133 4-114 (164)
160 PRK09563 rbgA GTPase YlqF; Rev 98.6 6E-08 1.3E-12 91.6 7.5 61 3-71 127-187 (287)
161 cd04175 Rap1 Rap1 subgroup. T 98.6 8.7E-07 1.9E-11 74.9 13.5 139 2-168 6-147 (164)
162 PTZ00133 ADP-ribosylation fact 98.6 3.9E-07 8.5E-12 79.8 11.7 105 3-131 23-131 (182)
163 cd04114 Rab30 Rab30 subfamily. 98.6 6.4E-07 1.4E-11 75.8 12.6 112 3-133 13-127 (169)
164 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 4.7E-07 1E-11 78.2 11.9 111 3-132 6-120 (170)
165 cd04109 Rab28 Rab28 subfamily. 98.6 1.3E-06 2.8E-11 78.4 15.1 139 2-167 5-149 (215)
166 PTZ00258 GTP-binding protein; 98.6 1.4E-07 3E-12 93.1 9.5 85 2-95 26-126 (390)
167 PF08477 Miro: Miro-like prote 98.6 9.8E-08 2.1E-12 76.6 6.9 112 3-129 5-119 (119)
168 TIGR00484 EF-G translation elo 98.6 2.5E-07 5.5E-12 97.2 11.8 111 3-133 16-142 (689)
169 cd04105 SR_beta Signal recogni 98.6 6.1E-07 1.3E-11 80.3 12.7 112 2-133 5-124 (203)
170 PRK09601 GTP-binding protein Y 98.6 2.2E-07 4.9E-12 90.8 10.3 84 2-94 7-106 (364)
171 cd01882 BMS1 Bms1. Bms1 is an 98.6 3.5E-07 7.7E-12 83.4 10.7 104 3-133 45-148 (225)
172 cd04137 RheB Rheb (Ras Homolog 98.6 3.8E-07 8.3E-12 78.4 10.2 112 2-132 6-120 (180)
173 cd04116 Rab9 Rab9 subfamily. 98.6 6.2E-07 1.3E-11 76.3 10.9 113 2-131 10-127 (170)
174 cd04176 Rap2 Rap2 subgroup. T 98.6 5.2E-07 1.1E-11 76.1 10.3 112 2-132 6-120 (163)
175 cd04177 RSR1 RSR1 subgroup. R 98.6 4.8E-07 1E-11 77.2 9.9 111 3-132 7-120 (168)
176 PRK05306 infB translation init 98.6 6.1E-07 1.3E-11 95.5 12.8 108 3-132 296-403 (787)
177 cd04135 Tc10 TC10 subfamily. 98.6 6.1E-07 1.3E-11 76.4 10.5 109 2-132 5-118 (174)
178 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 1.3E-06 2.7E-11 75.7 12.5 111 3-132 8-121 (172)
179 TIGR00483 EF-1_alpha translati 98.5 5.3E-07 1.1E-11 89.4 11.4 132 3-158 13-176 (426)
180 COG2262 HflX GTPases [General 98.5 9.3E-07 2E-11 87.0 12.3 123 2-133 197-319 (411)
181 cd04111 Rab39 Rab39 subfamily. 98.5 3.7E-06 8E-11 75.6 15.3 140 2-167 7-149 (211)
182 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 2.6E-06 5.7E-11 75.3 14.1 138 2-167 5-151 (201)
183 PLN03110 Rab GTPase; Provision 98.5 7.7E-07 1.7E-11 80.2 10.9 111 2-131 17-130 (216)
184 smart00177 ARF ARF-like small 98.5 1.5E-06 3.3E-11 75.3 12.3 107 3-131 19-127 (175)
185 cd04167 Snu114p Snu114p subfam 98.5 6.8E-07 1.5E-11 80.2 10.4 110 3-131 6-136 (213)
186 cd01849 YlqF_related_GTPase Yl 98.5 1.2E-07 2.7E-12 80.9 5.2 50 3-60 106-155 (155)
187 cd01892 Miro2 Miro2 subfamily. 98.5 2.6E-06 5.5E-11 73.5 13.1 110 3-132 10-122 (169)
188 TIGR00487 IF-2 translation ini 98.5 1.5E-06 3.4E-11 89.9 13.9 109 3-132 93-201 (587)
189 PTZ00369 Ras-like protein; Pro 98.5 9E-07 1.9E-11 77.5 10.0 111 2-131 10-123 (189)
190 cd04134 Rho3 Rho3 subfamily. 98.5 8.2E-07 1.8E-11 77.9 9.6 110 3-133 6-119 (189)
191 cd04150 Arf1_5_like Arf1-Arf5- 98.5 1.9E-06 4.2E-11 73.4 11.7 107 3-131 6-114 (159)
192 KOG3859 Septins (P-loop GTPase 98.5 2.4E-05 5.1E-10 74.2 19.7 119 1-133 46-191 (406)
193 TIGR03596 GTPase_YlqF ribosome 98.5 3.2E-07 7E-12 86.1 7.4 60 2-69 123-182 (276)
194 cd04117 Rab15 Rab15 subfamily. 98.5 3.7E-06 8E-11 71.6 13.3 111 3-132 6-119 (161)
195 cd04130 Wrch_1 Wrch-1 subfamil 98.5 1.8E-06 4E-11 74.1 11.4 111 2-133 5-119 (173)
196 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 2.7E-07 6E-12 77.6 6.1 52 3-62 89-140 (141)
197 CHL00189 infB translation init 98.5 1.7E-06 3.6E-11 91.7 12.9 109 3-132 250-361 (742)
198 PLN00223 ADP-ribosylation fact 98.5 4.8E-06 1E-10 72.9 13.8 108 2-131 22-131 (181)
199 KOG1547 Septin CDC10 and relat 98.5 1.7E-06 3.7E-11 80.3 11.2 122 2-132 51-198 (336)
200 PRK12740 elongation factor G; 98.4 2.2E-06 4.7E-11 89.7 13.3 111 3-133 1-127 (668)
201 cd01885 EF2 EF2 (for archaea a 98.4 1.8E-06 3.9E-11 79.0 11.1 110 3-131 6-138 (222)
202 cd04143 Rhes_like Rhes_like su 98.4 3.1E-06 6.8E-11 78.4 12.8 113 2-132 5-127 (247)
203 cd01870 RhoA_like RhoA-like su 98.4 1.8E-06 3.9E-11 73.6 10.3 110 3-133 7-120 (175)
204 TIGR00491 aIF-2 translation in 98.4 1.8E-06 3.9E-11 89.4 12.0 110 2-132 9-135 (590)
205 PLN03108 Rab family protein; P 98.4 7E-06 1.5E-10 73.6 14.0 112 2-132 11-125 (210)
206 KOG0448 Mitofusin 1 GTPase, in 98.4 7.8E-05 1.7E-09 77.5 22.6 112 3-133 115-276 (749)
207 cd01871 Rac1_like Rac1-like su 98.4 3.1E-06 6.7E-11 73.5 10.7 107 3-131 7-118 (174)
208 PRK12288 GTPase RsgA; Reviewed 98.4 3.9E-07 8.5E-12 88.7 5.4 54 3-63 211-270 (347)
209 TIGR01394 TypA_BipA GTP-bindin 98.4 9.7E-06 2.1E-10 84.1 15.3 110 3-132 7-130 (594)
210 PF03193 DUF258: Protein of un 98.3 1.4E-07 3.1E-12 82.5 1.4 56 3-65 41-102 (161)
211 PRK13351 elongation factor G; 98.3 4.3E-06 9.3E-11 87.8 12.6 111 3-133 14-140 (687)
212 PRK10218 GTP-binding protein; 98.3 3.8E-06 8.3E-11 87.3 11.8 110 3-132 11-134 (607)
213 PTZ00416 elongation factor 2; 98.3 1.7E-06 3.7E-11 92.9 9.3 139 2-165 24-187 (836)
214 PTZ00141 elongation factor 1- 98.3 2.9E-06 6.3E-11 85.1 10.4 133 3-159 13-183 (446)
215 PRK12289 GTPase RsgA; Reviewed 98.3 5E-07 1.1E-11 88.1 4.7 56 3-65 178-239 (352)
216 cd04126 Rab20 Rab20 subfamily. 98.3 6.9E-06 1.5E-10 75.0 11.8 108 3-132 6-114 (220)
217 cd01874 Cdc42 Cdc42 subfamily. 98.3 8.1E-06 1.8E-10 70.9 11.5 108 3-132 7-119 (175)
218 PLN03071 GTP-binding nuclear p 98.3 7.3E-06 1.6E-10 74.1 11.3 108 2-131 18-130 (219)
219 TIGR00157 ribosome small subun 98.3 7.8E-07 1.7E-11 82.4 4.9 54 3-64 126-185 (245)
220 cd04120 Rab12 Rab12 subfamily. 98.3 1.2E-05 2.5E-10 72.3 12.3 110 3-131 6-118 (202)
221 cd04121 Rab40 Rab40 subfamily. 98.3 1.4E-05 3.1E-10 71.0 12.5 137 3-168 12-151 (189)
222 TIGR03597 GTPase_YqeH ribosome 98.3 1.7E-06 3.6E-11 84.5 7.0 84 3-95 160-248 (360)
223 COG1161 Predicted GTPases [Gen 98.3 1.1E-06 2.4E-11 84.7 5.5 57 3-67 138-194 (322)
224 PRK04004 translation initiatio 98.3 7.9E-06 1.7E-10 84.7 12.1 108 3-131 12-136 (586)
225 TIGR03680 eif2g_arch translati 98.3 7.3E-06 1.6E-10 81.1 11.2 70 46-133 79-149 (406)
226 PRK00098 GTPase RsgA; Reviewed 98.2 2.6E-06 5.7E-11 81.0 7.5 54 2-62 169-228 (298)
227 cd04102 RabL3 RabL3 (Rab-like3 98.2 3.3E-05 7.2E-10 69.6 14.2 142 2-169 5-175 (202)
228 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.2 1.3E-05 2.8E-10 73.3 11.7 110 3-132 7-119 (222)
229 TIGR00503 prfC peptide chain r 98.2 9.7E-06 2.1E-10 83.0 12.0 109 3-131 17-145 (527)
230 smart00176 RAN Ran (Ras-relate 98.2 9.6E-06 2.1E-10 72.8 10.4 107 3-131 1-112 (200)
231 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.8E-06 6E-11 80.4 7.2 54 2-62 166-225 (287)
232 cd04129 Rho2 Rho2 subfamily. 98.2 9.7E-06 2.1E-10 70.9 10.1 109 3-132 7-119 (187)
233 cd04131 Rnd Rnd subfamily. Th 98.2 1.2E-05 2.7E-10 70.3 10.5 108 3-131 7-118 (178)
234 PRK00741 prfC peptide chain re 98.2 1.7E-05 3.7E-10 81.3 13.0 110 3-132 16-145 (526)
235 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.2 1.7E-05 3.6E-10 69.9 10.9 108 2-130 10-121 (182)
236 cd04128 Spg1 Spg1p. Spg1p (se 98.2 2.6E-05 5.7E-10 68.4 12.1 110 3-132 6-118 (182)
237 COG1100 GTPase SAR1 and relate 98.2 2.5E-05 5.4E-10 69.2 11.8 111 3-133 11-126 (219)
238 TIGR01393 lepA GTP-binding pro 98.2 1.3E-05 2.9E-10 83.2 11.4 110 3-131 9-135 (595)
239 cd01899 Ygr210 Ygr210 subfamil 98.2 1.1E-05 2.5E-10 77.6 10.2 85 2-95 3-110 (318)
240 TIGR01425 SRP54_euk signal rec 98.2 1.9E-05 4.1E-10 79.0 11.9 116 2-132 105-253 (429)
241 PRK09602 translation-associate 98.1 1.3E-05 2.8E-10 79.5 9.9 85 2-95 6-113 (396)
242 PTZ00132 GTP-binding nuclear p 98.1 6.5E-05 1.4E-09 67.1 13.6 110 3-131 15-126 (215)
243 PRK04000 translation initiatio 98.1 3E-05 6.4E-10 77.0 12.3 69 47-133 85-154 (411)
244 COG1162 Predicted GTPases [Gen 98.1 5.2E-06 1.1E-10 79.2 6.6 63 3-72 170-241 (301)
245 PF00025 Arf: ADP-ribosylation 98.1 2E-05 4.3E-10 68.7 9.7 137 2-168 19-158 (175)
246 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.1 3.7E-05 8E-10 70.9 11.6 107 3-130 19-129 (232)
247 PF10662 PduV-EutP: Ethanolami 98.1 1.7E-05 3.6E-10 68.3 8.2 117 3-162 7-123 (143)
248 cd01875 RhoG RhoG subfamily. 98.1 4.1E-05 8.9E-10 67.4 10.9 107 3-131 9-120 (191)
249 TIGR00490 aEF-2 translation el 98.0 1E-05 2.2E-10 85.6 7.7 110 3-132 25-152 (720)
250 cd01859 MJ1464 MJ1464. This f 98.0 8.7E-06 1.9E-10 69.1 5.6 51 2-60 106-156 (156)
251 PRK05433 GTP-binding protein L 98.0 3.9E-05 8.5E-10 79.7 11.1 111 3-132 13-140 (600)
252 KOG1490 GTP-binding protein CR 98.0 9.6E-06 2.1E-10 81.8 6.1 119 3-133 174-296 (620)
253 PF00071 Ras: Ras family; Int 98.0 1.3E-05 2.7E-10 67.4 6.0 136 3-168 5-145 (162)
254 PRK13768 GTPase; Provisional 98.0 5.6E-05 1.2E-09 70.3 10.7 81 47-133 97-177 (253)
255 TIGR02836 spore_IV_A stage IV 97.9 0.00013 2.8E-09 72.9 12.8 122 2-133 22-195 (492)
256 PLN00116 translation elongatio 97.9 5.1E-05 1.1E-09 81.8 10.8 110 3-131 25-163 (843)
257 KOG1424 Predicted GTP-binding 97.9 7.6E-06 1.6E-10 82.6 3.7 53 1-61 318-370 (562)
258 PRK13796 GTPase YqeH; Provisio 97.9 1E-05 2.2E-10 79.1 4.6 53 3-63 166-223 (365)
259 TIGR00064 ftsY signal recognit 97.9 3.9E-05 8.5E-10 72.3 8.4 75 45-132 153-231 (272)
260 PRK12724 flagellar biosynthesi 97.9 2.2E-05 4.7E-10 78.4 5.8 75 45-132 298-373 (432)
261 cd04103 Centaurin_gamma Centau 97.8 0.00018 4E-09 61.5 10.8 102 3-129 6-110 (158)
262 PRK07560 elongation factor EF- 97.8 5.9E-05 1.3E-09 80.1 9.0 110 3-131 26-152 (731)
263 cd04133 Rop_like Rop subfamily 97.8 0.00021 4.5E-09 62.7 10.8 109 3-132 7-119 (176)
264 PLN00043 elongation factor 1-a 97.8 0.0002 4.3E-09 72.0 12.0 134 3-158 13-182 (447)
265 COG1163 DRG Predicted GTPase [ 97.8 5.2E-05 1.1E-09 73.1 6.4 100 3-115 69-169 (365)
266 PRK10416 signal recognition pa 97.7 0.00026 5.6E-09 68.3 11.2 74 45-131 195-272 (318)
267 KOG1489 Predicted GTP-binding 97.7 0.00025 5.3E-09 68.3 10.7 116 3-133 202-327 (366)
268 PF00448 SRP54: SRP54-type pro 97.7 1.5E-05 3.2E-10 71.6 1.7 74 45-133 82-155 (196)
269 KOG2485 Conserved ATP/GTP bind 97.7 5.2E-05 1.1E-09 72.6 5.4 62 3-69 149-215 (335)
270 COG0536 Obg Predicted GTPase [ 97.7 0.00045 9.7E-09 67.1 11.5 117 2-133 164-290 (369)
271 PRK14722 flhF flagellar biosyn 97.6 0.00014 3.1E-09 71.6 7.8 78 45-132 214-295 (374)
272 PRK09435 membrane ATPase/prote 97.6 0.00062 1.3E-08 66.1 12.1 62 45-133 147-209 (332)
273 cd01873 RhoBTB RhoBTB subfamil 97.6 0.0008 1.7E-08 60.0 11.9 107 2-131 7-133 (195)
274 PRK11889 flhF flagellar biosyn 97.6 0.00014 3E-09 72.4 7.3 72 46-132 320-391 (436)
275 KOG2486 Predicted GTPase [Gene 97.6 0.00034 7.4E-09 66.4 9.5 119 3-133 142-263 (320)
276 PRK02224 chromosome segregatio 97.6 0.023 4.9E-07 61.3 24.6 48 101-158 110-159 (880)
277 PF09439 SRPRB: Signal recogni 97.6 4.2E-05 9.1E-10 68.2 3.2 112 3-132 9-126 (181)
278 KOG0395 Ras-related GTPase [Ge 97.6 0.00019 4.1E-09 64.5 7.3 111 3-132 9-122 (196)
279 PRK05703 flhF flagellar biosyn 97.6 9.5E-05 2.1E-09 73.9 5.9 95 45-166 298-392 (424)
280 PTZ00327 eukaryotic translatio 97.6 0.00045 9.7E-09 69.9 10.3 70 46-133 116-186 (460)
281 PRK14721 flhF flagellar biosyn 97.6 0.00012 2.7E-09 73.0 6.0 73 45-132 268-340 (420)
282 PRK12726 flagellar biosynthesi 97.5 0.00016 3.4E-09 71.6 6.5 71 46-131 285-355 (407)
283 PRK14723 flhF flagellar biosyn 97.5 0.00018 4E-09 76.4 7.4 75 45-132 262-337 (767)
284 TIGR03348 VI_IcmF type VI secr 97.5 0.00051 1.1E-08 76.6 11.2 118 3-133 117-258 (1169)
285 KOG0073 GTP-binding ADP-ribosy 97.5 0.0012 2.7E-08 58.2 11.2 138 3-166 22-160 (185)
286 TIGR00092 GTP-binding protein 97.5 0.00023 4.9E-09 70.0 7.4 81 2-94 7-107 (368)
287 COG5256 TEF1 Translation elong 97.5 0.0009 2E-08 66.4 10.5 134 3-160 13-182 (428)
288 TIGR01069 mutS2 MutS2 family p 97.5 0.018 4E-07 61.8 21.2 18 3-20 328-345 (771)
289 PF02263 GBP: Guanylate-bindin 97.4 0.0003 6.4E-09 65.7 6.1 101 2-111 26-130 (260)
290 PLN00023 GTP-binding protein; 97.4 0.0026 5.5E-08 61.9 12.6 111 3-132 27-165 (334)
291 PRK12723 flagellar biosynthesi 97.3 0.00048 1E-08 68.2 7.1 74 45-132 253-326 (388)
292 cd03115 SRP The signal recogni 97.3 0.0054 1.2E-07 52.9 12.7 74 45-133 81-154 (173)
293 PF04670 Gtr1_RagA: Gtr1/RagA 97.3 0.0012 2.5E-08 61.2 9.0 153 3-171 5-162 (232)
294 PRK14974 cell division protein 97.3 0.00066 1.4E-08 66.0 7.2 73 45-132 221-293 (336)
295 PRK12727 flagellar biosynthesi 97.2 0.0021 4.5E-08 66.2 10.3 70 45-131 427-497 (559)
296 PRK01889 GTPase RsgA; Reviewed 97.2 0.00036 7.8E-09 68.1 4.6 55 3-64 201-261 (356)
297 PRK00771 signal recognition pa 97.2 0.0024 5.2E-08 64.2 10.5 71 46-131 175-245 (437)
298 TIGR02858 spore_III_AA stage I 97.1 0.0083 1.8E-07 56.7 13.0 130 3-168 117-259 (270)
299 KOG1145 Mitochondrial translat 97.1 0.0064 1.4E-07 62.4 12.7 135 4-165 160-295 (683)
300 cd03112 CobW_like The function 97.1 0.00061 1.3E-08 58.8 4.7 71 46-129 86-157 (158)
301 PRK10246 exonuclease subunit S 97.1 0.079 1.7E-06 58.8 22.1 128 3-157 36-176 (1047)
302 KOG1954 Endocytosis/signaling 97.1 0.0012 2.6E-08 65.0 6.7 121 3-133 64-226 (532)
303 PF03029 ATP_bind_1: Conserved 97.0 0.0003 6.5E-09 65.1 2.0 79 48-133 92-171 (238)
304 PRK03918 chromosome segregatio 97.0 0.42 9.2E-06 51.5 26.1 42 105-157 113-154 (880)
305 PRK10867 signal recognition pa 97.0 0.0045 9.7E-08 62.2 10.3 71 45-130 182-252 (433)
306 KOG0447 Dynamin-like GTP bindi 97.0 0.0059 1.3E-07 62.8 10.9 94 47-155 412-507 (980)
307 PRK06995 flhF flagellar biosyn 97.0 0.0014 3E-08 66.7 6.5 73 45-132 333-405 (484)
308 COG2229 Predicted GTPase [Gene 96.9 0.02 4.3E-07 51.3 12.4 126 3-157 16-149 (187)
309 KOG1707 Predicted Ras related/ 96.9 0.0045 9.7E-08 63.7 9.4 119 3-140 15-137 (625)
310 PRK14845 translation initiatio 96.9 0.0076 1.6E-07 66.5 11.7 104 8-132 472-592 (1049)
311 cd03230 ABC_DR_subfamily_A Thi 96.9 0.017 3.6E-07 50.1 11.8 19 3-21 32-50 (173)
312 cd03228 ABCC_MRP_Like The MRP 96.8 0.012 2.7E-07 50.8 10.3 21 2-22 33-53 (171)
313 cd03222 ABC_RNaseL_inhibitor T 96.8 0.025 5.4E-07 50.0 12.3 97 3-127 31-130 (177)
314 TIGR00750 lao LAO/AO transport 96.8 0.0083 1.8E-07 57.1 9.8 18 2-19 39-56 (300)
315 cd03213 ABCG_EPDR ABCG transpo 96.8 0.023 5E-07 50.3 12.0 19 3-21 41-59 (194)
316 cd03246 ABCC_Protease_Secretio 96.8 0.012 2.5E-07 51.1 9.7 20 3-22 34-53 (173)
317 COG1419 FlhF Flagellar GTP-bin 96.7 0.0031 6.8E-08 62.6 6.6 72 45-131 280-351 (407)
318 COG0419 SbcC ATPase involved i 96.7 0.24 5.3E-06 54.0 21.5 121 3-156 31-162 (908)
319 cd03229 ABC_Class3 This class 96.7 0.025 5.4E-07 49.2 11.3 20 3-22 32-51 (178)
320 PRK06731 flhF flagellar biosyn 96.7 0.003 6.6E-08 59.6 5.7 72 46-132 154-225 (270)
321 PF05879 RHD3: Root hair defec 96.6 0.0028 6E-08 67.7 5.7 121 4-132 2-136 (742)
322 cd03247 ABCC_cytochrome_bd The 96.6 0.035 7.6E-07 48.2 11.8 20 3-22 34-53 (178)
323 TIGR00959 ffh signal recogniti 96.6 0.011 2.4E-07 59.4 9.4 71 45-130 181-251 (428)
324 KOG1532 GTPase XAB1, interacts 96.6 0.011 2.4E-07 56.4 8.7 96 47-161 116-220 (366)
325 KOG0410 Predicted GTP binding 96.6 0.0062 1.3E-07 59.2 7.0 115 2-130 183-306 (410)
326 PHA02562 46 endonuclease subun 96.6 0.67 1.5E-05 47.2 22.3 16 3-18 33-48 (562)
327 COG0480 FusA Translation elong 96.5 0.021 4.5E-07 60.7 11.4 111 3-133 16-143 (697)
328 PF00004 AAA: ATPase family as 96.5 0.0085 1.8E-07 48.2 6.3 96 3-129 4-111 (132)
329 cd03216 ABC_Carb_Monos_I This 96.4 0.022 4.8E-07 49.0 9.1 19 3-21 32-50 (163)
330 KOG0458 Elongation factor 1 al 96.4 0.014 3.1E-07 60.1 9.0 134 3-159 183-352 (603)
331 COG0012 Predicted GTPase, prob 96.4 0.0071 1.5E-07 59.5 6.5 79 2-94 7-107 (372)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.083 1.8E-06 44.6 12.3 92 3-128 32-126 (144)
333 cd03223 ABCD_peroxisomal_ALDP 96.4 0.058 1.3E-06 46.6 11.4 20 3-22 33-52 (166)
334 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.028 6.2E-07 42.1 8.2 65 3-95 5-69 (99)
335 PRK00409 recombination and DNA 96.3 1.1 2.4E-05 48.5 22.9 15 3-17 333-347 (782)
336 TIGR00618 sbcc exonuclease Sbc 96.3 0.67 1.5E-05 51.4 21.8 129 3-156 32-171 (1042)
337 COG4917 EutP Ethanolamine util 96.3 0.011 2.5E-07 50.2 6.0 121 3-170 7-130 (148)
338 cd03215 ABC_Carb_Monos_II This 96.3 0.064 1.4E-06 46.8 11.2 20 3-22 32-51 (182)
339 PRK01156 chromosome segregatio 96.2 2 4.4E-05 46.6 24.9 16 3-18 29-44 (895)
340 PRK13543 cytochrome c biogenes 96.2 0.067 1.5E-06 47.9 11.3 19 3-21 43-61 (214)
341 KOG2484 GTPase [General functi 96.2 0.0031 6.6E-08 62.4 2.5 55 3-65 258-312 (435)
342 KOG0996 Structural maintenance 96.1 0.086 1.9E-06 58.1 13.4 21 2-22 113-136 (1293)
343 TIGR00606 rad50 rad50. This fa 96.1 1.1 2.4E-05 50.9 22.8 15 3-17 34-48 (1311)
344 PRK10865 protein disaggregatio 96.1 0.43 9.3E-06 52.0 18.7 76 3-95 205-281 (857)
345 COG3276 SelB Selenocysteine-sp 96.1 0.026 5.6E-07 56.6 8.6 112 3-133 6-118 (447)
346 cd01855 YqeH YqeH. YqeH is an 96.0 0.003 6.5E-08 55.4 1.7 22 3-24 133-154 (190)
347 cd00009 AAA The AAA+ (ATPases 96.0 0.038 8.2E-07 44.0 7.9 20 2-21 24-43 (151)
348 KOG0462 Elongation factor-type 96.0 0.061 1.3E-06 55.5 10.8 136 6-168 69-219 (650)
349 cd03279 ABC_sbcCD SbcCD and ot 96.0 0.12 2.5E-06 46.5 11.6 17 3-19 34-50 (213)
350 cd03238 ABC_UvrA The excision 95.9 0.11 2.4E-06 45.8 11.2 17 3-19 27-43 (176)
351 cd03232 ABC_PDR_domain2 The pl 95.9 0.13 2.8E-06 45.3 11.5 19 3-21 39-57 (192)
352 KOG1486 GTP-binding protein DR 95.9 0.013 2.8E-07 55.3 5.2 102 3-116 68-169 (364)
353 COG0532 InfB Translation initi 95.9 0.08 1.7E-06 54.1 11.2 108 3-134 11-123 (509)
354 COG5192 BMS1 GTP-binding prote 95.8 0.035 7.6E-07 57.5 8.5 104 2-133 74-178 (1077)
355 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.11 2.4E-06 46.2 10.9 45 82-129 106-151 (200)
356 cd03214 ABC_Iron-Siderophores_ 95.7 0.11 2.3E-06 45.3 10.2 19 3-21 31-49 (180)
357 COG1217 TypA Predicted membran 95.7 0.063 1.4E-06 54.5 9.4 107 7-133 15-135 (603)
358 cd03111 CpaE_like This protein 95.7 0.058 1.3E-06 43.3 7.6 92 3-126 6-105 (106)
359 KOG0090 Signal recognition par 95.6 0.059 1.3E-06 49.6 8.3 94 3-116 44-139 (238)
360 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.035 7.7E-07 49.3 6.7 18 3-20 32-49 (200)
361 cd03243 ABC_MutS_homologs The 95.6 0.09 2E-06 46.7 9.3 18 2-19 34-51 (202)
362 cd01120 RecA-like_NTPases RecA 95.5 0.045 9.8E-07 45.0 6.7 19 3-21 5-23 (165)
363 cd02038 FleN-like FleN is a me 95.5 0.18 3.9E-06 42.2 10.4 98 2-130 5-109 (139)
364 KOG0446 Vacuolar sorting prote 95.5 0.0073 1.6E-07 63.7 2.2 80 47-133 132-214 (657)
365 COG4988 CydD ABC-type transpor 95.5 0.073 1.6E-06 55.0 9.3 20 3-22 353-372 (559)
366 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.23 4.9E-06 42.1 10.9 19 3-21 31-49 (157)
367 COG1132 MdlB ABC-type multidru 95.4 0.055 1.2E-06 55.5 8.2 92 3-113 361-481 (567)
368 KOG0079 GTP-binding protein H- 95.4 0.18 4E-06 44.1 10.0 74 3-95 14-91 (198)
369 TIGR02169 SMC_prok_A chromosom 95.3 2.5 5.5E-05 46.5 21.2 15 3-17 29-43 (1164)
370 TIGR01188 drrA daunorubicin re 95.2 0.32 7E-06 46.1 12.3 19 3-21 25-43 (302)
371 COG1341 Predicted GTPase or GT 95.2 0.051 1.1E-06 54.0 6.9 16 3-18 79-98 (398)
372 TIGR03375 type_I_sec_LssB type 95.2 0.056 1.2E-06 56.9 7.6 19 3-21 497-515 (694)
373 PRK13546 teichoic acids export 95.2 0.41 9E-06 44.7 12.6 21 2-22 55-75 (264)
374 KOG2423 Nucleolar GTPase [Gene 95.1 0.0085 1.8E-07 59.6 1.1 55 2-64 312-366 (572)
375 TIGR01187 potA spermidine/putr 95.1 0.36 7.7E-06 46.4 12.2 20 3-22 2-21 (325)
376 COG0396 sufC Cysteine desulfur 95.1 0.019 4.2E-07 53.3 3.3 22 3-24 36-57 (251)
377 PRK10789 putative multidrug tr 95.0 0.14 3.1E-06 52.7 9.9 21 2-22 346-366 (569)
378 cd03274 ABC_SMC4_euk Eukaryoti 95.0 0.29 6.4E-06 44.2 10.8 16 3-18 31-46 (212)
379 PRK11432 fbpC ferric transport 95.0 0.34 7.3E-06 47.4 11.9 22 3-24 38-59 (351)
380 PRK11176 lipid transporter ATP 95.0 0.072 1.6E-06 54.7 7.6 19 3-21 375-393 (582)
381 PRK00300 gmk guanylate kinase; 94.9 0.017 3.6E-07 51.0 2.4 20 2-21 10-29 (205)
382 cd00071 GMPK Guanosine monopho 94.9 0.019 4.2E-07 48.3 2.7 49 2-55 4-54 (137)
383 PRK10790 putative multidrug tr 94.9 0.16 3.4E-06 52.4 9.8 19 3-21 373-391 (592)
384 cd01130 VirB11-like_ATPase Typ 94.7 0.016 3.5E-07 51.0 1.8 18 3-20 31-48 (186)
385 KOG0054 Multidrug resistance-a 94.7 0.22 4.8E-06 56.5 11.0 21 3-23 553-573 (1381)
386 PRK11174 cysteine/glutathione 94.7 0.12 2.5E-06 53.3 8.2 19 3-21 382-400 (588)
387 cd01131 PilT Pilus retraction 94.7 0.017 3.6E-07 51.6 1.7 19 2-20 6-24 (198)
388 COG3523 IcmF Type VI protein s 94.6 0.095 2.1E-06 58.6 7.7 128 3-144 131-278 (1188)
389 TIGR02868 CydC thiol reductant 94.6 0.26 5.5E-06 50.1 10.3 100 3-125 367-494 (529)
390 cd02036 MinD Bacterial cell di 94.6 0.15 3.2E-06 43.4 7.4 106 3-130 6-126 (179)
391 cd03250 ABCC_MRP_domain1 Domai 94.6 0.057 1.2E-06 47.8 4.9 21 2-22 36-56 (204)
392 PF00005 ABC_tran: ABC transpo 94.5 0.017 3.6E-07 47.5 1.3 21 3-23 17-37 (137)
393 TIGR01846 type_I_sec_HlyB type 94.5 0.15 3.1E-06 53.9 8.6 19 3-21 489-507 (694)
394 PF13207 AAA_17: AAA domain; P 94.5 0.016 3.5E-07 46.5 1.2 17 3-19 5-21 (121)
395 TIGR03263 guanyl_kin guanylate 94.4 0.019 4.2E-07 49.5 1.5 50 2-55 6-55 (180)
396 cd03283 ABC_MutS-like MutS-lik 94.4 0.19 4.2E-06 45.0 8.0 18 3-20 31-48 (199)
397 cd02037 MRP-like MRP (Multiple 94.4 0.24 5.1E-06 42.6 8.2 109 2-130 5-133 (169)
398 KOG0098 GTPase Rab2, small G p 94.4 0.81 1.8E-05 41.5 11.7 75 3-96 12-90 (216)
399 PRK13657 cyclic beta-1,2-gluca 94.4 0.13 2.7E-06 53.1 7.6 20 3-22 367-386 (588)
400 COG3840 ThiQ ABC-type thiamine 94.3 0.015 3.4E-07 52.6 0.8 20 3-22 31-50 (231)
401 PRK13545 tagH teichoic acids e 94.3 0.67 1.4E-05 48.1 12.6 19 3-21 56-74 (549)
402 cd03240 ABC_Rad50 The catalyti 94.2 0.82 1.8E-05 40.9 11.7 20 3-22 28-51 (204)
403 COG0194 Gmk Guanylate kinase [ 94.2 0.019 4.2E-07 51.6 1.1 48 3-55 10-57 (191)
404 cd03239 ABC_SMC_head The struc 94.2 1.1 2.5E-05 39.3 12.3 22 3-24 28-52 (178)
405 TIGR01271 CFTR_protein cystic 94.1 0.26 5.7E-06 56.6 10.2 44 2-62 457-500 (1490)
406 COG1124 DppF ABC-type dipeptid 94.1 0.057 1.2E-06 50.5 4.0 23 3-25 39-61 (252)
407 PRK15439 autoinducer 2 ABC tra 94.0 0.63 1.4E-05 47.3 11.8 19 3-21 43-61 (510)
408 COG4962 CpaF Flp pilus assembl 94.0 0.1 2.2E-06 51.1 5.7 18 3-20 179-196 (355)
409 KOG0250 DNA repair protein RAD 94.0 12 0.00027 41.6 22.4 25 2-26 67-94 (1074)
410 KOG0071 GTP-binding ADP-ribosy 94.0 0.77 1.7E-05 40.0 10.4 119 2-143 22-144 (180)
411 TIGR03796 NHPM_micro_ABC1 NHPM 94.0 0.16 3.5E-06 53.5 7.6 20 2-21 510-529 (710)
412 KOG1491 Predicted GTP-binding 93.9 0.096 2.1E-06 51.3 5.3 21 2-22 25-45 (391)
413 PRK14737 gmk guanylate kinase; 93.9 0.036 7.7E-07 49.3 2.2 48 3-55 10-58 (186)
414 TIGR02168 SMC_prok_B chromosom 93.9 12 0.00026 41.0 23.3 20 3-22 29-51 (1179)
415 KOG0393 Ras-related small GTPa 93.9 0.051 1.1E-06 49.3 3.2 112 3-133 10-124 (198)
416 smart00382 AAA ATPases associa 93.8 0.037 8.1E-07 43.4 2.0 18 3-20 8-25 (148)
417 TIGR03258 PhnT 2-aminoethylpho 93.8 0.95 2.1E-05 44.4 12.1 20 3-22 37-56 (362)
418 TIGR02203 MsbA_lipidA lipid A 93.8 0.16 3.5E-06 51.9 7.0 19 3-21 364-382 (571)
419 KOG0087 GTPase Rab11/YPT3, sma 93.7 0.33 7.1E-06 44.6 8.0 93 1-115 18-115 (222)
420 COG0470 HolB ATPase involved i 93.7 0.27 5.8E-06 45.9 7.8 113 3-127 30-147 (325)
421 COG1136 SalX ABC-type antimicr 93.7 0.039 8.4E-07 51.0 2.0 19 3-21 37-55 (226)
422 cd03261 ABC_Org_Solvent_Resist 93.6 0.039 8.5E-07 49.9 2.0 19 3-21 32-50 (235)
423 PF13555 AAA_29: P-loop contai 93.6 0.045 9.8E-07 40.6 2.0 15 3-17 29-43 (62)
424 TIGR02322 phosphon_PhnN phosph 93.6 0.033 7.2E-07 48.1 1.4 19 2-20 6-24 (179)
425 PRK11607 potG putrescine trans 93.6 1.1 2.3E-05 44.3 12.1 21 2-22 50-70 (377)
426 cd03225 ABC_cobalt_CbiO_domain 93.6 0.048 1E-06 48.4 2.5 19 3-21 33-51 (211)
427 TIGR01166 cbiO cobalt transpor 93.6 0.042 9.1E-07 48.1 2.0 19 3-21 24-42 (190)
428 TIGR00960 3a0501s02 Type II (G 93.5 0.041 8.9E-07 49.1 1.9 20 2-21 34-53 (216)
429 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.044 9.4E-07 48.9 2.0 19 3-21 36-54 (218)
430 TIGR02673 FtsE cell division A 93.5 0.043 9.3E-07 48.8 1.9 19 3-21 34-52 (214)
431 PLN03232 ABC transporter C fam 93.5 0.51 1.1E-05 54.4 10.9 20 3-22 649-668 (1495)
432 cd03260 ABC_PstB_phosphate_tra 93.5 0.041 9E-07 49.4 1.8 19 3-21 32-50 (227)
433 cd03293 ABC_NrtD_SsuB_transpor 93.4 0.043 9.4E-07 49.1 1.9 19 3-21 36-54 (220)
434 PLN03130 ABC transporter C fam 93.4 0.25 5.3E-06 57.4 8.4 20 3-22 649-668 (1622)
435 KOG0080 GTPase Rab18, small G 93.4 0.34 7.4E-06 43.1 7.4 75 3-97 17-96 (209)
436 TIGR03608 L_ocin_972_ABC putat 93.4 0.046 1E-06 48.2 2.0 19 3-21 30-48 (206)
437 cd03265 ABC_DrrA DrrA is the A 93.4 0.045 9.7E-07 49.1 2.0 20 2-21 31-50 (220)
438 cd02023 UMPK Uridine monophosp 93.4 0.038 8.3E-07 48.7 1.5 18 3-20 5-22 (198)
439 cd03264 ABC_drug_resistance_li 93.4 0.046 9.9E-07 48.6 2.0 20 2-21 30-49 (211)
440 PRK10078 ribose 1,5-bisphospho 93.4 0.046 1E-06 48.0 1.9 20 2-21 7-26 (186)
441 cd03224 ABC_TM1139_LivF_branch 93.3 0.047 1E-06 48.8 2.0 19 3-21 32-50 (222)
442 COG4608 AppF ABC-type oligopep 93.3 0.041 8.9E-07 52.0 1.6 19 3-21 45-63 (268)
443 KOG0084 GTPase Rab1/YPT1, smal 93.3 1.4 3E-05 40.1 11.2 110 3-132 15-128 (205)
444 cd03258 ABC_MetN_methionine_tr 93.3 0.047 1E-06 49.3 1.9 21 2-22 36-56 (233)
445 PF13671 AAA_33: AAA domain; P 93.3 0.039 8.5E-07 45.4 1.3 19 2-20 4-22 (143)
446 cd03263 ABC_subfamily_A The AB 93.3 0.049 1.1E-06 48.6 2.0 19 3-21 34-52 (220)
447 PTZ00099 rab6; Provisional 93.2 0.96 2.1E-05 39.5 10.1 78 36-131 17-98 (176)
448 TIGR02524 dot_icm_DotB Dot/Icm 93.2 0.04 8.7E-07 54.0 1.5 19 2-20 139-157 (358)
449 cd03226 ABC_cobalt_CbiO_domain 93.2 0.05 1.1E-06 48.2 1.9 19 3-21 32-50 (205)
450 COG1116 TauB ABC-type nitrate/ 93.2 0.052 1.1E-06 50.8 2.0 22 2-23 34-55 (248)
451 cd02042 ParA ParA and ParB of 93.1 0.32 6.9E-06 38.1 6.3 15 3-17 6-20 (104)
452 TIGR01360 aden_kin_iso1 adenyl 93.1 0.055 1.2E-06 46.6 2.1 17 2-18 8-24 (188)
453 cd03292 ABC_FtsE_transporter F 93.1 0.052 1.1E-06 48.2 1.9 19 3-21 33-51 (214)
454 COG0444 DppD ABC-type dipeptid 93.1 0.048 1E-06 52.7 1.8 18 3-20 37-54 (316)
455 PTZ00265 multidrug resistance 93.1 0.18 3.9E-06 57.9 6.6 19 3-21 1200-1218(1466)
456 cd03256 ABC_PhnC_transporter A 93.1 0.053 1.1E-06 49.1 1.9 19 3-21 33-51 (241)
457 PRK11629 lolD lipoprotein tran 93.1 0.055 1.2E-06 49.0 2.0 19 3-21 41-59 (233)
458 PRK06645 DNA polymerase III su 93.1 0.44 9.4E-06 49.0 8.7 110 3-126 49-164 (507)
459 cd03262 ABC_HisP_GlnQ_permease 93.0 0.056 1.2E-06 47.9 2.0 20 2-21 31-50 (213)
460 TIGR03015 pepcterm_ATPase puta 93.0 1.4 3E-05 40.2 11.3 18 3-20 49-66 (269)
461 cd02025 PanK Pantothenate kina 93.0 0.049 1.1E-06 49.6 1.7 18 3-20 5-22 (220)
462 PRK13695 putative NTPase; Prov 93.0 0.71 1.5E-05 39.8 8.9 18 3-20 6-23 (174)
463 PTZ00243 ABC transporter; Prov 93.0 0.54 1.2E-05 54.4 10.3 94 2-114 1341-1462(1560)
464 TIGR01189 ccmA heme ABC export 93.0 0.058 1.3E-06 47.6 2.0 19 3-21 32-50 (198)
465 KOG0394 Ras-related GTPase [Ge 93.0 0.22 4.8E-06 45.0 5.6 73 3-95 15-92 (210)
466 cd03269 ABC_putative_ATPase Th 92.9 0.06 1.3E-06 47.8 2.1 19 3-21 32-50 (210)
467 TIGR00957 MRP_assoc_pro multi 92.9 0.63 1.4E-05 53.8 10.7 20 3-22 670-689 (1522)
468 PRK14269 phosphate ABC transpo 92.9 0.056 1.2E-06 49.4 1.9 19 2-20 33-51 (246)
469 cd03254 ABCC_Glucan_exporter_l 92.9 0.068 1.5E-06 48.0 2.4 21 3-23 35-55 (229)
470 cd03268 ABC_BcrA_bacitracin_re 92.9 0.069 1.5E-06 47.4 2.4 19 3-21 32-50 (208)
471 TIGR00235 udk uridine kinase. 92.9 0.05 1.1E-06 48.5 1.5 18 3-20 12-29 (207)
472 KOG0467 Translation elongation 92.9 0.38 8.2E-06 51.4 8.0 106 6-131 18-137 (887)
473 PHA02518 ParA-like protein; Pr 92.9 0.3 6.6E-06 42.8 6.5 67 45-129 75-144 (211)
474 TIGR02315 ABC_phnC phosphonate 92.9 0.069 1.5E-06 48.4 2.4 19 3-21 34-52 (243)
475 cd03235 ABC_Metallic_Cations A 92.9 0.058 1.3E-06 48.0 1.8 19 3-21 31-49 (213)
476 cd02019 NK Nucleoside/nucleoti 92.8 0.064 1.4E-06 39.8 1.8 18 3-20 5-22 (69)
477 PRK10584 putative ABC transpor 92.8 0.063 1.4E-06 48.3 2.0 20 2-21 41-60 (228)
478 PRK15177 Vi polysaccharide exp 92.8 0.072 1.6E-06 47.9 2.4 19 3-21 19-37 (213)
479 cd03259 ABC_Carb_Solutes_like 92.8 0.074 1.6E-06 47.3 2.4 19 3-21 32-50 (213)
480 PRK07940 DNA polymerase III su 92.8 0.47 1E-05 47.2 8.3 90 3-106 42-137 (394)
481 PRK14242 phosphate transporter 92.8 0.06 1.3E-06 49.3 1.9 18 3-20 38-55 (253)
482 PRK14247 phosphate ABC transpo 92.8 0.061 1.3E-06 49.1 1.9 19 3-21 35-53 (250)
483 PF13401 AAA_22: AAA domain; P 92.7 0.044 9.6E-07 44.3 0.8 20 2-21 9-28 (131)
484 PRK14239 phosphate transporter 92.7 0.065 1.4E-06 49.0 2.0 19 2-20 36-54 (252)
485 PF13238 AAA_18: AAA domain; P 92.7 0.06 1.3E-06 43.0 1.5 18 3-20 4-21 (129)
486 PRK11124 artP arginine transpo 92.7 0.078 1.7E-06 48.2 2.4 20 3-22 34-53 (242)
487 PRK11819 putative ABC transpor 92.6 1.4 3E-05 45.4 11.9 19 3-21 39-57 (556)
488 PRK14955 DNA polymerase III su 92.6 0.6 1.3E-05 46.2 8.8 110 3-127 44-164 (397)
489 TIGR01194 cyc_pep_trnsptr cycl 92.6 0.45 9.7E-06 49.0 8.2 19 3-21 374-392 (555)
490 PRK08233 hypothetical protein; 92.6 0.065 1.4E-06 45.9 1.8 18 3-20 9-26 (182)
491 TIGR01978 sufC FeS assembly AT 92.6 0.066 1.4E-06 48.5 1.9 18 3-20 32-49 (243)
492 TIGR03864 PQQ_ABC_ATP ABC tran 92.6 0.077 1.7E-06 48.1 2.3 20 3-22 33-52 (236)
493 PRK13851 type IV secretion sys 92.6 0.065 1.4E-06 52.4 1.9 19 2-20 167-185 (344)
494 cd03218 ABC_YhbG The ABC trans 92.6 0.081 1.8E-06 47.6 2.5 20 3-22 32-51 (232)
495 cd03245 ABCC_bacteriocin_expor 92.6 0.08 1.7E-06 47.3 2.4 20 3-22 36-55 (220)
496 cd03253 ABCC_ATM1_transporter 92.6 0.079 1.7E-06 47.8 2.4 20 3-22 33-52 (236)
497 PRK10744 pstB phosphate transp 92.6 0.066 1.4E-06 49.4 1.9 19 3-21 45-63 (260)
498 COG1196 Smc Chromosome segrega 92.6 3.1 6.7E-05 46.9 15.3 42 107-159 125-166 (1163)
499 TIGR03740 galliderm_ABC gallid 92.6 0.071 1.5E-06 47.8 2.1 19 3-21 32-50 (223)
500 TIGR02211 LolD_lipo_ex lipopro 92.6 0.083 1.8E-06 47.2 2.5 20 3-22 37-56 (221)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=3.4e-50 Score=362.28 Aligned_cols=184 Identities=40% Similarity=0.672 Sum_probs=157.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||+||+|||+++|.++.++.++|..|+.+.+.+ +|+.|+||||| ||+|+..+++++.++|.+|+.++.
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTP---Gl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTP---GLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE-----SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCC---CCCCCcccHHHHHHHHHHHHHhcc
Confidence 59999999999999999999999989999999999999999 99999999999 999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
|||||||||++++ |||.+++.+++.+.++||+++|+|+|||||++|.+.+ .++++|+.+..|..|++|+++||+|||
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 9999999999999 9999999999999999999999999999999999988 569999985356789999999999999
Q ss_pred EEcCCCCch---hhHHH-----------HcCCCCCChHHHHHHHH
Q 044972 163 LFDNKTKDA---AKRTE-----------QNGGQPYIDEIFAELKK 193 (307)
Q Consensus 163 ~fnNk~~~~---~~~~~-----------~n~g~~yt~~~~~~~e~ 193 (307)
+|||++.+. ..|+. +|+|.|||++||+++++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~ 203 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE 203 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 999993221 22222 99999999999999995
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=2.2e-43 Score=312.56 Aligned_cols=179 Identities=46% Similarity=0.776 Sum_probs=165.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|+|||||||++|+|+|.+.|.+..+..++|+.|+.....+ +|++|+||||| ||+|+..+.+.+..++.+|+..+
T Consensus 5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTP---G~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTP---GLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECc---CCCCccCChHHHHHHHHHHHHhc
Confidence 379999999999999999999998888889999999999999 99999999999 99998877888999999999999
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
.+|||+||||++++ +||+++..+++.++++||+++|+|+|||||++|++.+ .++++|+.. .+..|+.++++||+||
T Consensus 81 ~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCeE
Confidence 99999999999998 7999999999999999999999999999999999987 699999997 6789999999999999
Q ss_pred EEEcCCCC--chhhHHH-----------HcCCCCCChHHH
Q 044972 162 VLFDNKTK--DAAKRTE-----------QNGGQPYIDEIF 188 (307)
Q Consensus 162 ~~fnNk~~--~~~~~~~-----------~n~g~~yt~~~~ 188 (307)
|+|||+.+ ....|+. +|+|.||+++||
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999983 3334443 899999999886
No 3
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.97 E-value=1.8e-30 Score=264.45 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=130.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--H
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--G 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~ 79 (307)
.+|+||+|||||+|+|+|+++|.+.. ..+.|+.+....+.+ +|+.|+||||| ||+|+..+. ....+|.+|+ .
T Consensus 123 LVGKTGVGKSSLINSILGekvf~vss-~~~~TTr~~ei~~~i-dG~~L~VIDTP---GL~dt~~dq-~~neeILk~Ik~~ 196 (763)
T TIGR00993 123 VLGKSGVGKSATINSIFGEVKFSTDA-FGMGTTSVQEIEGLV-QGVKIRVIDTP---GLKSSASDQ-SKNEKILSSVKKF 196 (763)
T ss_pred EECCCCCCHHHHHHHHhccccccccC-CCCCceEEEEEEEEE-CCceEEEEECC---CCCccccch-HHHHHHHHHHHHH
Confidence 36999999999999999999998754 335566676667778 99999999999 999986543 3444555555 2
Q ss_pred hcCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCc-----ccHHHhcCCCCCchHHHH
Q 044972 80 MAKDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDND-----ETLEDYLGPECPKPLKEI 153 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~-----~sie~yl~~~~~~~Lk~L 153 (307)
+..+|||+||||++++. +.+.++..+++.|+++||+++|+|+||||||||.++++| .++++|+.. ++..||.+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~~ 275 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQA 275 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHHH
Confidence 34568999999999972 233478899999999999999999999999999997432 689999997 89999999
Q ss_pred HHhcCCeEEEEc
Q 044972 154 LQLCDNRRVLFD 165 (307)
Q Consensus 154 i~~Cg~R~~~fn 165 (307)
|..|.||+++||
T Consensus 276 Irq~~g~~~l~n 287 (763)
T TIGR00993 276 IGQAVGDLRLMN 287 (763)
T ss_pred HHHhcCcceecc
Confidence 999999999999
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.96 E-value=2.3e-29 Score=238.99 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=123.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.||+|||||+|+|+|+++|.+.. ..+.|..+......+ +|+.|+||||| ||+|+...++.. .++.+|+. .
T Consensus 43 lvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTP---GL~d~~~~~e~~-~~~ik~~l-~ 115 (313)
T TIGR00991 43 VMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTP---GLIEGGYINDQA-VNIIKRFL-L 115 (313)
T ss_pred EECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECC---CCCchHHHHHHH-HHHHHHHh-h
Confidence 47999999999999999999865432 224444444455667 99999999999 999976544544 35556653 4
Q ss_pred CCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 82 KDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 82 ~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
.+|||+||||++++ .|+++.|..+++.|+.+||+++|+|+||||||+|.+..++.++++|+.+ +++.|+++|+.+-+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~~~~ 193 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHSGAG 193 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHHHhc
Confidence 56999999998876 4999999999999999999999999999999999987666899999997 88999999998754
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.89 E-value=5.8e-23 Score=190.39 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc---CHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA---DFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~---~~~~i~~eI~kcv~ 79 (307)
+|+||||||||+|+|+|..++.+. ...+.|..++...+.+ +|..|+||||| ||.|+.. .+..+...|.+++
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTP---Gl~~~~~~~~~~~~~~~~I~~~l- 110 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTP---GLLESVMDQRVNRKILSSIKRYL- 110 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECC---CcCcchhhHHHHHHHHHHHHHHH-
Confidence 799999999999999999988764 3456788888888888 99999999999 9998743 2334555555543
Q ss_pred hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN 134 (307)
Q Consensus 80 ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~ 134 (307)
...++|++|+|.+++ .|++..|..+++.|.+.||.++|+|+||||||+|.+.++
T Consensus 111 -~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 111 -KKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred -hccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 345799999999887 489999999999999999999999999999999998664
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.64 E-value=2.6e-15 Score=141.38 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=99.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCC-ceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDT-KTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT-~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||+.|.|+|.++..+ |..+.| +.-..+..+. +..++++|||| ||+.+ ...+.+-+.+++..+
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~-~~~QiIfvDTP---Gih~p---k~~l~~~m~~~a~~s 82 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTT-DNAQIIFVDTP---GIHKP---KHALGELMNKAARSA 82 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEc-CCceEEEEeCC---CCCCc---chHHHHHHHHHHHHH
Confidence 79999999999999999998875 345544 4456666676 88999999999 99976 356777888999999
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++|++|||+++...++..|...++.++. .....|+++++.|...+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~ 129 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKP 129 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCc
Confidence 999999999999985599999999999987 35689999999998876
No 7
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=8.9e-15 Score=118.49 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=82.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|+|+|.+.+..+.. .+.|+.+......+ ++..+.+|||| ||.++....... ..+.+.+...
T Consensus 5 iG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtp---G~~~~~~~~~~~-~~~~~~~~~~- 77 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTP---GINDGESQDNDG-KEIRKFLEQI- 77 (116)
T ss_dssp EESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESS---SCSSSSHHHHHH-HHHHHHHHHH-
T ss_pred ECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCC---CCcccchhhHHH-HHHHHHHHHH-
Confidence 59999999999999999876665443 46777776667778 99999999999 999875433322 2333333333
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
...|++++|+++..+.++.+...++.++ ..+++++|+|+
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 6679999999987445556666667662 57889999985
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.56 E-value=8.1e-14 Score=130.56 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=86.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||++|+|+|.+...+. ..+.|+ ......... ++.++++|||| |++++. ..+.+.+...+..+
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~-~~~qi~~iDTP---G~~~~~---~~l~~~~~~~~~~~ 81 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTE-DDAQIIFVDTP---GIHKPK---RALNRAMNKAAWSS 81 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEc-CCceEEEEECC---CCCCch---hHHHHHHHHHHHHH
Confidence 699999999999999999876543 333333 333333334 56899999999 998754 33445555556666
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.+++|++|||+++...++..+...+..+.. ...+++||+|+.|.+.
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVK 127 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCC
Confidence 789999999999985688888777777663 2468999999999874
No 9
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=6e-14 Score=116.58 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=88.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.|+|.+..... ...+.|.........+ +|..+.||||| |+.+... .+.+.+.+.....
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~Dtp---G~~~~~~---~~~~~~~~~~~~~ 73 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTG---GIEPDDE---GISKEIREQAELA 73 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECC---CCCCchh---HHHHHHHHHHHHH
Confidence 5899999999999999998643322 2335666677777778 89999999999 9876432 3444454444445
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++++|++....++..+...+..++.. ..++++|+|+.|....
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~ 120 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE 120 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence 5779999999998767777777666666542 3789999999998654
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.55 E-value=4.1e-14 Score=139.66 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=103.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|.|+|++...+. ...++|++-..+.+.| .|+.+.||||+ ||.+.+ ++.+.+.|..-...+.
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTg---Gl~~~~--~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTG---GLDDGD--EDELQELIREQALIAI 81 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECC---CCCcCC--chHHHHHHHHHHHHHH
Confidence 799999999999999999987764 3568999999999999 99999999999 998633 3567777777777777
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...|++|||++....+|+.|..+.++|+. ..+++|+|.++.|....
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNLKA 127 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh
Confidence 88999999999887799999999999985 47899999999998743
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.52 E-value=1e-13 Score=120.52 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=94.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CH-HHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DF-EFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~-~~i~~eI~kcv~l 80 (307)
+|.|||||||++|.|+|.++..+. ..++|..+..+...+ ++..+.+|||| |+++... +. +.+..+. +
T Consensus 6 vG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlP---G~ysl~~~s~ee~v~~~~-----l 74 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLP---GIYSLSSKSEEERVARDY-----L 74 (156)
T ss_dssp EESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE-------SSSSSSSHHHHHHHHH-----H
T ss_pred ECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECC---CcccCCCCCcHHHHHHHH-----H
Confidence 699999999999999999955543 457888888888888 99999999999 8887542 32 3233222 2
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
....||++++|+++. .+ +.+...+..+.++ -..+||++|+.|.....+..+ ....|-+..|-.
T Consensus 75 ~~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~i----------d~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEI----------DAEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEE----------CHHHHHHHhCCC
Confidence 246799999999987 54 4445555555553 478999999999876532222 123444444667
Q ss_pred EEEEcCCCCc
Q 044972 161 RVLFDNKTKD 170 (307)
Q Consensus 161 ~~~fnNk~~~ 170 (307)
++.++-+...
T Consensus 138 vi~~sa~~~~ 147 (156)
T PF02421_consen 138 VIPVSARTGE 147 (156)
T ss_dssp EEEEBTTTTB
T ss_pred EEEEEeCCCc
Confidence 7777776544
No 12
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.50 E-value=4e-13 Score=111.38 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|+|+|.+....... ...|+.+....... .+..+.+|||| |+.++...... .+.+......
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~~~---~~~~~~~~~~ 80 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTD-DDAQIIFVDTP---GIHKPKKKLGE---RMVKAAWSAL 80 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEc-CCeEEEEEECC---CCCcchHHHHH---HHHHHHHHHH
Confidence 69999999999999999876543322 23344444444444 66899999999 99876433222 1333344456
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+++|++++|+++...++..+...+..+... -...+||+|+.|...
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 789999999999855677776666666542 357899999999763
No 13
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=9.3e-13 Score=129.42 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=94.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|+|||||||++|.|+|.+...+. ...++|+.+......| +|+.+.||||| |+.+. ...+...+......+
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTp---G~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTG---GIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECC---CCCCc---chhHHHHHHHHHHHH
Confidence 4799999999999999998743322 2347888999999999 99999999999 98542 234556666655566
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++|++|||++....++..+.....++++ ..+++|+|.|+.|....
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRK-----SGKPVILVANKIDGKKE 122 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----hCCCEEEEEECccCCcc
Confidence 678999999999877899999888888876 25789999999997654
No 14
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.46 E-value=1.6e-12 Score=107.71 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=82.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
..|++|+||||++|+|+|....... ...+.|..+......+ ++..++++||| |+.+...... .+...-...+
T Consensus 6 l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~Dtp---G~~~~~~~~~---~~~~~~~~~~ 77 (157)
T cd04164 6 IVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTA---GIRETEDEIE---KIGIERAREA 77 (157)
T ss_pred EECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECC---CcCCCcchHH---HHHHHHHHHH
Confidence 3699999999999999998743222 2335566666666677 89999999999 9887543221 1111112233
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+|++++|+++..+.+..+...+.. ....+++||+|+.|....
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 458999999999986777777665544 235789999999998754
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.45 E-value=1.1e-12 Score=122.24 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|+|+|.+...+.. ....|+.+..+.... ++.+++++||| |+.+.. ..+.+.+.+.+..+.
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i~~i~~~-~~~qii~vDTP---G~~~~~---~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRISGIHTT-GASQIIFIDTP---GFHEKK---HSLNRLMMKEARSAI 77 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcEEEEEEc-CCcEEEEEECc---CCCCCc---chHHHHHHHHHHHHH
Confidence 6999999999999999998654322 123455555555455 67789999999 998753 223344455455556
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.++|++|+|+++....+ .+...+..+.. .-.++++|+|+.|....
T Consensus 78 ~~aDvvl~VvD~~~~~~-~~~~i~~~l~~-----~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNG-DGEFVLTKLQN-----LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred hhCCEEEEEEECCCCCc-hHHHHHHHHHh-----cCCCEEEEEECeeCCCH
Confidence 78999999999874333 33444555543 24679999999998643
No 16
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.45 E-value=4.1e-12 Score=110.47 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=90.7
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH---HHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF---VSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~---i~~eI~kcv 78 (307)
+|.+||||||++|.|+|.. ..... ...+.|..+... .+ + ..++++||| |+.++..+... ....+...+
T Consensus 24 vG~~~~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~--~~-~-~~~~liDtp---G~~~~~~~~~~~~~~~~~~~~~l 95 (179)
T TIGR03598 24 AGRSNVGKSSLINALTNRKKLARTS-KTPGRTQLINFF--EV-N-DGFRLVDLP---GYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred EcCCCCCHHHHHHHHhCCCCccccc-CCCCcceEEEEE--Ee-C-CcEEEEeCC---CCccccCChhHHHHHHHHHHHHH
Confidence 6999999999999999986 22221 122345555432 33 3 379999999 98765433221 222222222
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|+|+++..+++..+...+..+.. ...+++||+|++|.+.. ..++..+. .+++.+..-+
T Consensus 96 -~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~--~~~~~~~~-----~i~~~l~~~~ 162 (179)
T TIGR03598 96 -EKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGIPVLIVLTKADKLKK--SELNKQLK-----KIKKALKKDA 162 (179)
T ss_pred -HhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCH--HHHHHHHH-----HHHHHHhhcc
Confidence 23456899999999887899988877666543 24678999999998754 33332222 2444454433
Q ss_pred --CeEEEEcCCC
Q 044972 159 --NRRVLFDNKT 168 (307)
Q Consensus 159 --~R~~~fnNk~ 168 (307)
.+++.+..++
T Consensus 163 ~~~~v~~~Sa~~ 174 (179)
T TIGR03598 163 DDPSVQLFSSLK 174 (179)
T ss_pred CCCceEEEECCC
Confidence 2566666554
No 17
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.44 E-value=4.1e-12 Score=119.46 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEE--EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEM--QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~--~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
++|++|+||||++|+++|...+...... .+.|..... ..... +| ..++||||| ||.|.. .+....
T Consensus 9 vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTp---Gfgd~~-~~~~~~ 83 (276)
T cd01850 9 VVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTP---GFGDNI-NNSDCW 83 (276)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecC---Cccccc-cchhhH
Confidence 5899999999999999999877543211 123322222 23334 66 479999999 998753 222222
Q ss_pred HHHHH----HH--------------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 72 KEIVK----CI--------------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 72 ~eI~k----cv--------------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+.|.. .+ ......+|++|++++.. ..+++.|...++.+.. ..++|+|+|++|.+.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcCC
Confidence 22222 11 11123589999999875 3688888888877764 367999999999987
Q ss_pred CCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCC
Q 044972 133 DNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTK 169 (307)
Q Consensus 133 ~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~ 169 (307)
. ..+..+.. .+++.++..+-+++-|.+...
T Consensus 158 ~--~e~~~~k~-----~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 158 P--EELKEFKQ-----RIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred H--HHHHHHHH-----HHHHHHHHcCCceECCCCCcc
Confidence 5 33444332 477888888888888877544
No 18
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=2.6e-12 Score=107.77 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=81.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
++|.+|+||||++|+|+|...+.... ..+.|..+....... +|..+.+|||| |+.+.......+..-........
T Consensus 7 i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtp---G~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 7 IIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTA---GIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred EEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECC---CCccccchhccHHHHHHHHHHHH
Confidence 57999999999999999987543322 234455555555667 88999999999 98765322222211111112233
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++|++++|+++....+......+..+.. .-.+++|++|+.|....
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE-----EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----cCCCEEEEEeccccCCc
Confidence 468999999999876777666555444332 24689999999997654
No 19
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=2.5e-12 Score=126.83 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=93.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|.|+|.+...+. ...++|..+......+ +|..+.||||| |+.+.. ..+...+......+
T Consensus 6 ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~ 77 (435)
T PRK00093 6 IVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTG---GIEPDD---DGFEKQIREQAELA 77 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECC---CCCCcc---hhHHHHHHHHHHHH
Confidence 4799999999999999998754333 2456888888888889 99999999999 998632 23445555555556
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..++|++|||+++..+++..+.....++... -.++|+|+|+.|...
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~ 123 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD 123 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence 6789999999999878999888888887763 578999999999543
No 20
>PRK15494 era GTPase Era; Provisional
Probab=99.39 E-value=8.5e-12 Score=120.44 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=85.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+|.|||||||++|.++|.+...+ ++.+ .|+....+...+ +|.+++++||| |+.+... .+...+.+....
T Consensus 57 ivG~~nvGKSTLin~l~~~k~~iv--s~k~~tTr~~~~~~~~~-~~~qi~~~DTp---G~~~~~~---~l~~~~~r~~~~ 127 (339)
T PRK15494 57 IIGRPNSGKSTLLNRIIGEKLSIV--TPKVQTTRSIITGIITL-KDTQVILYDTP---GIFEPKG---SLEKAMVRCAWS 127 (339)
T ss_pred EEcCCCCCHHHHHHHHhCCceeec--cCCCCCccCcEEEEEEe-CCeEEEEEECC---CcCCCcc---cHHHHHHHHHHH
Confidence 379999999999999999875432 2333 455555666778 89999999999 9976432 344556666666
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
+..+.|++|||++....|+..+...+..+... -...|||+|+.|..
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 67899999999998657888777666666542 24567899999964
No 21
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.39 E-value=7.3e-12 Score=104.51 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=77.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.|.|...+.+. ..+.|..+......+ +|..+.+|||| |+.+..... ....+.......
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~--~~~~~~~~~~~~- 72 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKL-GGKEIEIVDLP---GTYSLSPYS--EDEKVARDFLLG- 72 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEee-CCeEEEEEECC---CccccCCCC--hhHHHHHHHhcC-
Confidence 699999999999999998744332 234566676677788 88999999999 987643211 112233322222
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+++|++|+|+++. .+.. ....+..+.. .-...|||+|+.|....
T Consensus 73 ~~~d~vi~v~d~~-~~~~-~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 73 EKPDLIVNVVDAT-NLER-NLYLTLQLLE-----LGLPVVVALNMIDEAEK 116 (158)
T ss_pred CCCcEEEEEeeCC-cchh-HHHHHHHHHH-----cCCCEEEEEehhhhccc
Confidence 7999999999987 4322 2222333322 24689999999997654
No 22
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.38 E-value=1.7e-12 Score=128.36 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=105.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls 81 (307)
+|+||+||||++|.|||++...+.. ..+.|++......++ +|+.+.+|||- |+--.....+.+..- +.+ ...+
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTA---GiRrk~ki~e~~E~~Sv~r-t~~a 257 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTA---GIRRKGKITESVEKYSVAR-TLKA 257 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECC---CCCcccccccceEEEeehh-hHhH
Confidence 6999999999999999999877653 457788888888899 99999999999 986543222211110 111 0112
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC-e
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN-R 160 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~-R 160 (307)
....+++|||+++...++++|...+..+.+ .-+-.|||+++||.++.+..+.++|-. .|...+..-+. +
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~-----~i~~~l~~l~~a~ 327 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKK-----KLRRKLPFLDFAP 327 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHH-----HHHHHhccccCCe
Confidence 245799999999987899999999999887 588899999999998864345555543 25555554443 4
Q ss_pred EEEEc
Q 044972 161 RVLFD 165 (307)
Q Consensus 161 ~~~fn 165 (307)
.+.+.
T Consensus 328 i~~iS 332 (444)
T COG1160 328 IVFIS 332 (444)
T ss_pred EEEEE
Confidence 44443
No 23
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.37 E-value=4.2e-12 Score=107.79 Aligned_cols=121 Identities=13% Similarity=0.002 Sum_probs=76.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|++||||||++|.|+|.+.+.+. ..+.|..+......+ + |..+.|+||| |+.+.....+.+...+. ..
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~i~Dtp---G~~~~~~~~~~~~~~~~----~~ 71 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVAN--YPFTTLEPNLGVVEV-PDGARIQVADIP---GLIEGASEGRGLGNQFL----AH 71 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccC--CCceeecCcceEEEc-CCCCeEEEEecc---ccchhhhcCCCccHHHH----HH
Confidence 799999999999999998763322 234566666666677 7 9999999999 98643211111211221 12
Q ss_pred CCCCeEEEEEEeCCCCC------CHHHHH-HHHHHHHhhc-----cccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRF------SEEEGA-AIHSLESLFG-----KKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~Rf------T~ee~~-~l~~i~~~FG-----~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.+++++|+++.... +..+.. ....+..... ...-.+++||+|+.|....
T Consensus 72 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 72 IRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred HhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 35789999999986331 222222 2222222211 1245789999999998754
No 24
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.36 E-value=1.7e-11 Score=99.82 Aligned_cols=118 Identities=17% Similarity=0.034 Sum_probs=76.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|+|++........ ..+.|.........+..+..+.++||| |+.+...........+. ...
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~---g~~~~~~~~~~~~~~~~----~~~ 73 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTP---GIDEAGGLGREREELAR----RVL 73 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECC---CCCccccchhhHHHHHH----HHH
Confidence 6999999999999999987664332 223344444444444137899999999 99876543332212222 223
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+|++++|++.....+......+.... ....+++||+|+.|....
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLR-----ERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence 5789999999987444444443122211 246779999999998865
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=1.2e-11 Score=121.93 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=87.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|+|+|.+.+.... ..+.|..+......+ +|..+.+|||| |+.+.....+.+..........+.
T Consensus 179 vG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~---G~~~~~~~~~~~e~~~~~~~~~~~ 253 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTA---GIRRKGKVTEGVEKYSVIRTLKAI 253 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECC---CCCCCcchhhHHHHHHHHHHHHHH
Confidence 6999999999999999988655432 335677776666667 99999999999 987644322222221111112234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+..|++|||+++...++.++...+..+.. .-..+||++|++|.+..
T Consensus 254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~~-----~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 254 ERADVVLLVIDATEGITEQDLRIAGLALE-----AGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCCCH
Confidence 57899999999987899998877766654 24689999999998743
No 26
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=2.3e-11 Score=103.12 Aligned_cols=120 Identities=22% Similarity=0.133 Sum_probs=76.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l 80 (307)
.+|.+||||||++|.++|.+...+.. ...|..+......+ ++..++++||| |+.+..... ..+... ++..
T Consensus 5 ~~G~~~~GKssli~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~~~~~~~~~---~~~~ 75 (168)
T cd01897 5 IAGYPNVGKSSLVNKLTRAKPEVAPY--PFTTKSLFVGHFDY-KYLRWQVIDTP---GLLDRPLEERNTIEMQ---AITA 75 (168)
T ss_pred EEcCCCCCHHHHHHHHhcCCCccCCC--CCcccceeEEEEcc-CceEEEEEECC---CcCCccccCCchHHHH---HHHH
Confidence 37999999999999999987433221 23356666666667 78899999999 986533211 111111 1111
Q ss_pred cCCCCeEEEEEEeCCCC--CC-HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNR--FS-EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~R--fT-~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+|++|||+++..+ ++ ......+..+...++ -.++|||+|+.|....
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF 128 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence 12246899999988633 33 223445555555442 4689999999998754
No 27
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.31 E-value=1.4e-10 Score=101.10 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC-CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH--HHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG-SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF--VSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s-~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~--i~~eI~kcv~ 79 (307)
+|.+||||||++|+|+|.+ |....+ ..++|..+.. ..+ +..+.||||| |+.....+... -...+.....
T Consensus 30 vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~--~~~--~~~l~l~Dtp---G~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 30 AGRSNVGKSSLINALTNRK-NLARTSKTPGRTQLINF--FEV--NDKLRLVDLP---GYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred EcCCCCCHHHHHHHHhCCC-CcccccCCCCceeEEEE--Eec--CCeEEEeCCC---CCCCcCCCchHHHHHHHHHHHHH
Confidence 6999999999999999975 222222 2234443332 223 4789999999 98754433221 1122222222
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+++++++|++.+.+++..+..+++.+.. ...++++++|+.|.+.+
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-----YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHHHHHHHHHH-----cCCcEEEEEECcccCCH
Confidence 33457788999988776788877666665532 24568999999998765
No 28
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.30 E-value=1.8e-11 Score=108.87 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCC---CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSE---DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s---vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|++||||||++|+|+|......+....+ +|..+.. ...++...++++||| |+.+.....+...+.
T Consensus 6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~Dtp---G~~~~~~~~~~~l~~----- 75 (197)
T cd04104 6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLP---GIGSTAFPPDDYLEE----- 75 (197)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCC---CCCcccCCHHHHHHH-----
Confidence 479999999999999999764432222222 2222221 111134689999999 998765554443222
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|+||+|.+ + +|+..|...++.+... | ..+++|+|++|.+..
T Consensus 76 -~~~~~~d~~l~v~~-~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 -MKFSEYDFFIIISS-T-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS 122 (197)
T ss_pred -hCccCcCEEEEEeC-C-CCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence 23467899999854 3 8999999999988874 3 567999999998753
No 29
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.29 E-value=4.3e-11 Score=117.63 Aligned_cols=120 Identities=17% Similarity=0.041 Sum_probs=85.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|+++|.+...... ..+.|..+......+ +|+.+.+|||| |+.+.....+.+..........+
T Consensus 177 ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~liDT~---G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFER-NGKKYLLIDTA---GIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred EECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEE-CCcEEEEEECC---CccccccchhhHHHHHHHHHHHH
Confidence 36999999999999999987543322 234566666666677 89999999999 98754322222222111111123
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..+.|++|+|+++..+++.++...+..+.. .-..+|||+|++|.+
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLRIAGLILE-----AGKALVIVVNKWDLV 296 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHHHHHHHHH-----cCCcEEEEEECcccC
Confidence 467899999999987899998877766654 236799999999987
No 30
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.28 E-value=4.3e-11 Score=120.15 Aligned_cols=117 Identities=18% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|.|+|...+... ...++|+........+ +|..+.|+||| |+... ...+...+......+.
T Consensus 44 vG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~---G~~~~---~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 44 VGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTG---GWEPD---AKGLQASVAEQAEVAM 115 (472)
T ss_pred EcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCC---CcCCc---chhHHHHHHHHHHHHH
Confidence 799999999999999998755443 3446788888888888 99999999999 97532 1234445555555566
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.+.|+||||+++.++.|..+......+.. .-..+|||.|+.|...
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCc
Confidence 78999999999987888887777777764 3578999999999643
No 31
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.28 E-value=3e-10 Score=94.43 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC-CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS-SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~-~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kcv 78 (307)
+|.+|+||||++|+|++..... ..+. .+.|... ....+ ++ .++++||| |+.+...+. +....-+..++
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~-~~~~~~~~t~~~--~~~~~-~~-~~~~~D~~---g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLA-RTSKTPGKTQLI--NFFNV-ND-KFRLVDLP---GYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCcee-eecCCCCcceeE--EEEEc-cC-eEEEecCC---CccccccCHHHHHHHHHHHHHHH
Confidence 6999999999999999643222 2222 2233322 22333 33 99999999 887654321 12222222222
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHH--h
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQ--L 156 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~--~ 156 (307)
......+++++|++....++..+..++.++... -.++++|+|+.|.+.+ ........ .+...++ .
T Consensus 77 -~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~--~~~~~~~~-----~~~~~l~~~~ 143 (170)
T cd01876 77 -ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK--SELAKALK-----EIKKELKLFE 143 (170)
T ss_pred -HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh--HHHHHHHH-----HHHHHHHhcc
Confidence 234567889999988755677777777776642 3678999999998765 22222221 2334443 2
Q ss_pred cCCeEEEEcCCCCc
Q 044972 157 CDNRRVLFDNKTKD 170 (307)
Q Consensus 157 Cg~R~~~fnNk~~~ 170 (307)
....++.++.++..
T Consensus 144 ~~~~~~~~Sa~~~~ 157 (170)
T cd01876 144 IDPPIILFSSLKGQ 157 (170)
T ss_pred CCCceEEEecCCCC
Confidence 34467777776643
No 32
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.25 E-value=2.8e-10 Score=95.28 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.+.|.+ .|.... ..+.|.........+ . +..+.++||| |.. ..... +.
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~~Dtp---G~~-------~~~~~----~~ 69 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEK-KRGITIDLGFAYLDL-PSGKRLGFIDVP---GHE-------KFIKN----ML 69 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhh-ccCceEEeeeEEEEe-cCCcEEEEEECC---ChH-------HHHHH----HH
Confidence 6999999999999999864 232111 123344444445566 5 8899999999 852 11122 22
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|+|+++...+..+....+..+. ..| .+++||++|+.|....
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILE-LLG---IKRGLVVLTKADLVDE 119 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHH-HhC---CCcEEEEEECccccCH
Confidence 3456899999999987434444444444332 233 2479999999997543
No 33
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=104.56 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=84.2
Q ss_pred CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kc 77 (307)
||++||||||++|+|+|++ +..|+. .+.|+.... ..+ ++. +.+||-| |+.=...+. +.....|...
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSkt--PGrTq~iNf--f~~-~~~-~~lVDlP---GYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKT--PGRTQLINF--FEV-DDE-LRLVDLP---GYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCC--CCccceeEE--EEe-cCc-EEEEeCC---CcccccCCHHHHHHHHHHHHHH
Confidence 7999999999999999987 444443 356665443 345 443 8999999 553223332 3455566665
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+..-.. ..++++++++...+++.|+++++++.. .--.++||+|+.|.+..
T Consensus 101 L~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 101 LEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADKLKK 150 (200)
T ss_pred Hhhchh-heEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccccCCh
Confidence 554333 888889999875677779999999987 36789999999999986
No 34
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.25 E-value=8.2e-11 Score=105.44 Aligned_cols=164 Identities=11% Similarity=0.024 Sum_probs=97.0
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||+.|.||+.....+.. ...+.|.........+ +|+++++||
T Consensus 5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~liD 83 (208)
T cd04166 5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKFIIAD 83 (208)
T ss_pred EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceEEEEE
Confidence 6999999999999999765433210 0134565555666678 999999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
|| |.. ....++. .+...+|++|||+++...++.++...+..+. .+| ..++|||+|+.|....
T Consensus 84 Tp---G~~-------~~~~~~~----~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~-~~~---~~~iIvviNK~D~~~~ 145 (208)
T cd04166 84 TP---GHE-------QYTRNMV----TGASTADLAILLVDARKGVLEQTRRHSYILS-LLG---IRHVVVAVNKMDLVDY 145 (208)
T ss_pred CC---cHH-------HHHHHHH----HhhhhCCEEEEEEECCCCccHhHHHHHHHHH-HcC---CCcEEEEEEchhcccC
Confidence 99 962 2222222 2346899999999987566666655444433 333 3568889999997643
Q ss_pred CcccHHHhcCCCCCchHHHHHHhcCCe---EEEEcCCCCchhhHHHHcCCCCCChHHHHH
Q 044972 134 NDETLEDYLGPECPKPLKEILQLCDNR---RVLFDNKTKDAAKRTEQNGGQPYIDEIFAE 190 (307)
Q Consensus 134 ~~~sie~yl~~~~~~~Lk~Li~~Cg~R---~~~fnNk~~~~~~~~~~n~g~~yt~~~~~~ 190 (307)
....++..+ ..++.+++..+.. ++.+.-.....-.....+.+.||-+-+++.
T Consensus 146 ~~~~~~~i~-----~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~ 200 (208)
T cd04166 146 SEEVFEEIV-----ADYLAFAAKLGIEDITFIPISALDGDNVVSRSENMPWYSGPTLLEH 200 (208)
T ss_pred CHHHHHHHH-----HHHHHHHHHcCCCCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHH
Confidence 111122222 2466777776643 455554433221111134444444444443
No 35
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.24 E-value=9.7e-11 Score=123.15 Aligned_cols=118 Identities=16% Similarity=0.089 Sum_probs=92.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|.|+|.+...+. ...++|+.+......| +|..+.||||| |+.... ..+...+......+
T Consensus 280 IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~ 351 (712)
T PRK09518 280 IVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTG---GWEADV---EGIDSAIASQAQIA 351 (712)
T ss_pred EECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCC---CcCCCC---ccHHHHHHHHHHHH
Confidence 4799999999999999998653332 2357888888888889 99999999999 976422 23555566666666
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..++|++|||+++...++..+...+..+.. ....+|+|+++.|...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence 778999999999876789888877777764 4679999999999764
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.22 E-value=1.4e-10 Score=98.19 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=72.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+|.+||||||++|.|.|.+.-.+.. ...|.....+...+ ++. .+.++||| |+.+.......+.....+
T Consensus 5 ivG~~~~GKStl~~~l~~~~~~v~~~--~~~t~~~~~~~~~~-~~~~~~~l~Dtp---G~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVVADIP---GLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCC--CccccCCcceEEEc-CCCCeEEEEecC---cccCcccccCCchHHHHH----
Confidence 47999999999999999976522111 12244555555566 666 99999999 986432211112222211
Q ss_pred cCCCCeEEEEEEeCCCC-CCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNR-FSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~R-fT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.....|++++|+++..+ -+-+. ...++.+........-...+||.|+.|....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 12357899999998732 11122 2233334433222234678999999997654
No 37
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.22 E-value=2.1e-10 Score=91.78 Aligned_cols=141 Identities=15% Similarity=0.024 Sum_probs=81.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++|+||||++|.|++...+.... ..|. ......... .+..++++||| |..+..... .
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~---g~~~~~~~~-----------~ 63 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTA---GQERFRSLR-----------R 63 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecC---ChHHHHhHH-----------H
Confidence 6999999999999999988642221 1222 222222331 26789999999 875432111 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+..|++++|+++....+..+......+..........+++|++|+.|..... ...... ..+.....++-
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCC
Confidence 3457899999999987333333333221112222233467899999999976541 111110 12334445566
Q ss_pred eEEEEcCCCC
Q 044972 160 RRVLFDNKTK 169 (307)
Q Consensus 160 R~~~fnNk~~ 169 (307)
.++..+....
T Consensus 136 ~~~~~s~~~~ 145 (157)
T cd00882 136 PYFETSAKTG 145 (157)
T ss_pred cEEEEecCCC
Confidence 6777776543
No 38
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=115.72 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||+.|.++|++...+.. ..+.|++.......+ +|.+|.++||. |+.+|...-+.+.=+ ++. ...
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTA---GiRet~d~VE~iGIe--Rs~-~~i 294 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTA---GIRETDDVVERIGIE--RAK-KAI 294 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecC---CcccCccHHHHHHHH--HHH-HHH
Confidence 7999999999999999999887643 457799999999999 99999999999 999876444443323 322 234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...|.+|+|++.....+.++...+..+. .-+.+++|.|+.|....
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIELLP------KKKPIIVVLNKADLVSK 339 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHHhcc------cCCCEEEEEechhcccc
Confidence 5789999999998557888887776211 35678999999997665
No 39
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.20 E-value=1.1e-10 Score=110.24 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=84.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCHHH---
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADFEF--- 69 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~~~--- 69 (307)
+||++|+||||++|+|++...+..... ....|.........+. +| ..++||||| ||.|. .+...
T Consensus 9 VvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTp---GfGd~-i~n~~~~~ 84 (281)
T PF00735_consen 9 VVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTP---GFGDN-IDNSDCWE 84 (281)
T ss_dssp EEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC----CSSS-STHCHHHH
T ss_pred EECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCC---Ccccc-ccchhhhH
Confidence 589999999999999999887655311 0111222222222221 33 488999999 99875 23222
Q ss_pred -HHHHHHHH----HH---------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972 70 -VSKEIVKC----IG---------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN 134 (307)
Q Consensus 70 -i~~eI~kc----v~---------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~ 134 (307)
+..-|... +. ...+.+||.|+.++.. .++++.|..+++.|.+ +-++|-|+.++|.|..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~------~vNvIPvIaKaD~lt~- 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK------RVNVIPVIAKADTLTP- 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT------TSEEEEEESTGGGS-H-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc------cccEEeEEecccccCH-
Confidence 22222221 11 1123689999999864 3799999998888876 6789999999999976
Q ss_pred cccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972 135 DETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD 170 (307)
Q Consensus 135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~ 170 (307)
..+..+- ..+..-++..+=+++-|.....+
T Consensus 158 -~el~~~k-----~~i~~~l~~~~I~~f~f~~~~~~ 187 (281)
T PF00735_consen 158 -EELQAFK-----QRIREDLEENNIKIFDFPEDDDD 187 (281)
T ss_dssp -HHHHHHH-----HHHHHHHHHTT--S---------
T ss_pred -HHHHHHH-----HHHHHHHHHcCceeecccccccc
Confidence 4555443 24677778888888777765544
No 40
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=1.9e-10 Score=113.21 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=77.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
-+|.|||||||++|+|++.+.-. +..+ .|.....+...+.+++.++|+||| |+.........+...+.+
T Consensus 164 lVG~PNaGKSTLln~Lt~~k~~v---s~~p~TT~~p~~Giv~~~~~~~i~~vDtP---Gi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 164 LLGLPNAGKSTFIRAVSAAKPKV---ADYPFTTLVPNLGVVRVDDERSFVVADIP---GLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred EEcCCCCCHHHHHHHHhCCcccc---cCCCCCccCcEEEEEEeCCCcEEEEEeCC---CccccccchhhHHHHHHH----
Confidence 37999999999999999987532 3333 455667777777345779999999 998643222223333333
Q ss_pred cCCCCeEEEEEEeCCCCCC-----HHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFS-----EEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT-----~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
...+.+++|+|+++. .++ +.....++.+..+ ... .-+..|||+|+.|.+..
T Consensus 234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~-~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKY-SPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhh-hhhhcCCCEEEEEeCCccCCh
Confidence 235789999999875 221 2223334444432 222 34688999999997643
No 41
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.19 E-value=2.9e-10 Score=100.41 Aligned_cols=120 Identities=18% Similarity=0.048 Sum_probs=74.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|++||||||++|.|+|...+..... ..|..+......+ ++ ..++|+||| |+.+.. +. .....+.. ....
T Consensus 47 iG~~g~GKStLl~~l~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~i~Dt~---G~~~~~-~~-~~~~~~~~-~~~~ 117 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADVYAEDQL--FATLDPTTRRLRL-PDGREVLLTDTV---GFIRDL-PH-QLVEAFRS-TLEE 117 (204)
T ss_pred ECCCCCCHHHHHHHHhcchhccCCcc--ceeccceeEEEEe-cCCceEEEeCCC---ccccCC-CH-HHHHHHHH-HHHH
Confidence 69999999999999999875543221 2233444445556 44 499999999 986532 12 22222221 1123
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++++|+++..+.+..+... ...+.. ++. .-..++||+|+.|.++.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~-~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKE-LGA-EDIPMILVLNKIDLLDD 168 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCc-CCCCEEEEEEccccCCh
Confidence 457899999999874444443322 333333 232 13679999999998765
No 42
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.19 E-value=2.6e-10 Score=110.83 Aligned_cols=123 Identities=17% Similarity=0.093 Sum_probs=79.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
-+|.|||||||++|.++|.+++.+.. ...|.........+++|.++.++||| |+... .+.. +.+.+...+ ..
T Consensus 194 lvG~~NvGKSSLln~L~~~~~~v~~~--~~tT~d~~~~~i~~~~~~~i~l~DT~---G~~~~-l~~~-lie~f~~tl-e~ 265 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGADVYAADQ--LFATLDPTTRRLDLPDGGEVLLTDTV---GFIRD-LPHE-LVAAFRATL-EE 265 (351)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccC--CccccCCEEEEEEeCCCceEEEEecC---ccccc-CCHH-HHHHHHHHH-HH
Confidence 37999999999999999998654332 23355555556666578999999999 98431 1222 222233222 23
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....|++|+|+++..+.+.++...+..+...++. .-.++|+|+|+.|....
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA-EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-CCCCEEEEEEeecCCCh
Confidence 4578999999998745555444333333333342 23579999999997643
No 43
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=7.1e-11 Score=110.68 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=90.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
|+|.||+|||||+|+|++.+...+..- .+.|.......... +|..+++.||| |+.|....+.+... .+...
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~-~~~~l~lwDtP---G~gdg~~~D~~~r~----~~~d~ 114 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSY-DGENLVLWDTP---GLGDGKDKDAEHRQ----LYRDY 114 (296)
T ss_pred EecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhc-cccceEEecCC---CcccchhhhHHHHH----HHHHH
Confidence 789999999999999996554332210 11122222223345 88999999999 99987654433333 33344
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC----------cccHHHhcCCCCCchHH
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN----------DETLEDYLGPECPKPLK 151 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~----------~~sie~yl~~~~~~~Lk 151 (307)
.|..|++|+++++++|+-.-|...+.-+.- ....+.++++.|..|..... ..++.+|+.. .-..+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~---~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~~~~ 190 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVII---LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAEALG 190 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHH---hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHHHHH
Confidence 577889999999987876666655444443 33348999999999876541 1345566654 223455
Q ss_pred HHHHh
Q 044972 152 EILQL 156 (307)
Q Consensus 152 ~Li~~ 156 (307)
++++.
T Consensus 191 ~~~q~ 195 (296)
T COG3596 191 RLFQE 195 (296)
T ss_pred HHHhh
Confidence 55555
No 44
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.18 E-value=2.5e-10 Score=97.74 Aligned_cols=112 Identities=17% Similarity=0.070 Sum_probs=75.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccC--------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVG--------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF 67 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s--------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~ 67 (307)
.+|.+||||||+.|+|++......... ..+.|.........+ .+..+++|||| |..+.
T Consensus 4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtp---G~~~~---- 75 (189)
T cd00881 4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTP---GHEDF---- 75 (189)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCC---CcHHH----
Confidence 479999999999999999865433211 112343444444556 77899999999 97531
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..... .+...+|++++|+++...++......+..+.. ...+++||+|+.|....
T Consensus 76 ---~~~~~----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 76 ---SSEVI----RGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE 129 (189)
T ss_pred ---HHHHH----HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence 11111 22347899999999875566666655555443 45789999999998863
No 45
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.18 E-value=2.9e-10 Score=101.67 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=87.5
Q ss_pred CCCCCCcHHHHHHHHHCC------Ccc-ccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGR------RAF-KSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~------~~F-~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+|+|||||.|.|++. ..+ ... ....+.|.........+ +++++++|||| |..+
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtP---G~~~------ 77 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCP---GHAD------ 77 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECc---CHHH------
Confidence 699999999999999864 111 000 00224444444445566 88999999999 8632
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
...++ ..+..+.|++|||+++...++.++...+..+... | ..++||++|+.|.+.. ..+.+++.+
T Consensus 78 -~~~~~----~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~~--~~~~~~~~~---- 142 (195)
T cd01884 78 -YIKNM----ITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVDD--EELLELVEM---- 142 (195)
T ss_pred -HHHHH----HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCCc--HHHHHHHHH----
Confidence 22333 3344679999999998756788887777766542 2 3468899999998743 334444432
Q ss_pred hHHHHHHhcCC
Q 044972 149 PLKEILQLCDN 159 (307)
Q Consensus 149 ~Lk~Li~~Cg~ 159 (307)
.++.++..+|.
T Consensus 143 ~i~~~l~~~g~ 153 (195)
T cd01884 143 EVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHhcc
Confidence 57777877653
No 46
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.17 E-value=3.5e-10 Score=113.58 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--Hh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--GM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~l 80 (307)
+|.|||||||++|.|+|.+.+... ...+.|.........+ +|..+.++||| |+........ ..+....+ ..
T Consensus 217 iG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTa---G~~~~~~~~~--~~e~~~~~~~~~ 289 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTA---GLRRRVKQAS--GHEYYASLRTHA 289 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECC---Cccccccccc--hHHHHHHHHHHH
Confidence 699999999999999998754332 2335566666666778 99999999999 9853211100 01111111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+..+.|++|||+++..+++.++...+..+.. .-..+|||+|++|....
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence 3468999999999987899888876666553 24689999999997653
No 47
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.16 E-value=1.5e-08 Score=98.24 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=100.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCcccc----ccCCC--CCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCC---cCHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKS----KVGSS--EDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSS---ADFEF 69 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s----~~s~~--svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~---~~~~~ 69 (307)
+||+.|+||||++||++|...-.. ...+. +.|.........+. +| -.++||||| ||.|.- ..-+-
T Consensus 28 ~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtp---GfGD~idNs~~we~ 104 (373)
T COG5019 28 VVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTP---GFGDFIDNSKCWEP 104 (373)
T ss_pred EecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccC---CccccccccccHHH
Confidence 689999999999999999843222 11222 22333334444441 33 489999999 987642 22222
Q ss_pred HHHHHHHH----H----------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972 70 VSKEIVKC----I----------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN 134 (307)
Q Consensus 70 i~~eI~kc----v----------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~ 134 (307)
|...|..- + ......+||.|+.++.. ..+++-|..+++.|-+ .-+.|-|+.++|.|..
T Consensus 105 I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~------~vNlIPVI~KaD~lT~- 177 (373)
T COG5019 105 IVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK------RVNLIPVIAKADTLTD- 177 (373)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc------ccCeeeeeeccccCCH-
Confidence 33333221 1 13345799999999753 4899999999998886 5689999999999976
Q ss_pred cccHHHhcCCCCCchHHHHHHhcCCeEEE-EcCCCC
Q 044972 135 DETLEDYLGPECPKPLKEILQLCDNRRVL-FDNKTK 169 (307)
Q Consensus 135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~-fnNk~~ 169 (307)
.-+.+|- ..+.+.|..+.=+++. ||+-..
T Consensus 178 -~El~~~K-----~~I~~~i~~~nI~vf~pyd~e~~ 207 (373)
T COG5019 178 -DELAEFK-----ERIREDLEQYNIPVFDPYDPEDD 207 (373)
T ss_pred -HHHHHHH-----HHHHHHHHHhCCceeCCCCcccc
Confidence 4455543 3477888888877763 566543
No 48
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.16 E-value=4.9e-10 Score=112.05 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ 79 (307)
.+|+|||||||++|.++|.+. +.+. ..+.|+.+......+ +|.++.++||| |+.++. +.+... |.++ .
T Consensus 208 IvG~~nvGKSSLiN~L~~~~~aivs~--~pgtTrd~~~~~i~~-~g~~v~l~DTa---G~~~~~---~~ie~~gi~~~-~ 277 (442)
T TIGR00450 208 IVGSPNVGKSSLLNALLKQDRAIVSD--IKGTTRDVVEGDFEL-NGILIKLLDTA---GIREHA---DFVERLGIEKS-F 277 (442)
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCC--CCCcEEEEEEEEEEE-CCEEEEEeeCC---Ccccch---hHHHHHHHHHH-H
Confidence 379999999999999999864 4433 235677777777788 99999999999 987643 212111 2222 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
......|++|+|+++.++.+.++. .+..+.. .-.++|||.|+.|..
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLK 323 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence 344689999999999767776654 3322221 235789999999964
No 49
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.15 E-value=3.5e-10 Score=113.16 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls 81 (307)
+|.|||||||++|.++|.+...+.. ..+.|.........+ +|..+.++||| |+.++. ..+... +.+. ...
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~---G~~~~~---~~ie~~gi~~~-~~~ 291 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTA---GIRETD---DEVEKIGIERS-REA 291 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCC---CCCCCc---cHHHHHHHHHH-HHH
Confidence 7999999999999999987533222 234566666667778 99999999999 987643 222221 2222 223
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....|++|+|+++..+.+.++...+.. ....+++||+|+.|....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhcccc
Confidence 467899999999976666665443322 224689999999997643
No 50
>PRK11058 GTPase HflX; Provisional
Probab=99.12 E-value=8.7e-10 Score=109.79 Aligned_cols=123 Identities=14% Similarity=0.016 Sum_probs=80.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
-+|.|||||||++|.++|.+++.+.. ...|.........++++..++++||| |+... .+.. +...+... ...
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~v~~~--~~tTld~~~~~i~l~~~~~~~l~DTa---G~~r~-lp~~-lve~f~~t-l~~ 273 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVYAADQ--LFATLDPTLRRIDVADVGETVLADTV---GFIRH-LPHD-LVAAFKAT-LQE 273 (426)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccC--CCCCcCCceEEEEeCCCCeEEEEecC---ccccc-CCHH-HHHHHHHH-HHH
Confidence 37999999999999999988774332 23455555556667344599999999 98532 2222 22333332 233
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|+|+++.++.+.+....+..+...++. .-..+|+|+|+.|.+..
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~-~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA-HEIPTLLVMNKIDMLDD 324 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccCCCc
Confidence 4689999999998755555554443333333332 23579999999997643
No 51
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.11 E-value=8.3e-10 Score=105.61 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=83.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ 79 (307)
-||.|||||||+.+.|.+-+.=.. +.+ .|+....+.... ++.++-||||| ||.|-..+. ..|.+.-.-++.
T Consensus 173 VaG~PNVGKSSlv~~lT~AkpEvA---~YPFTTK~i~vGhfe~-~~~R~QvIDTP---GlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 173 VAGYPNVGKSSLVRKLTTAKPEVA---PYPFTTKGIHVGHFER-GYLRIQVIDTP---GLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred EecCCCCcHHHHHHHHhcCCCccC---CCCccccceeEeeeec-CCceEEEecCC---cccCCChHHhcHHHHHHHHHHH
Confidence 379999999999999999775332 233 466778888888 88899999999 999854332 223222221121
Q ss_pred hcCCCCeEEEEEEeCC--CCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVR--NRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~--~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
. =-++|||+++.. .-|+-+++ ..++.++..|. ..+|+|+|+.|-...
T Consensus 246 h---l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 246 H---LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred H---hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 1 135888998875 36777664 46788888876 789999999997643
No 52
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.11 E-value=1.1e-09 Score=115.14 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=83.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--Hh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--GM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~l 80 (307)
+|.|||||||++|+|+|.+...+. ...+.|.........+ +|..+.+|||| |+......... .+....+ ..
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTa---G~~~~~~~~~~--~e~~~~~r~~~ 528 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTA---GIKRRQHKLTG--AEYYSSLRTQA 528 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECC---CcccCcccchh--HHHHHHHHHHH
Confidence 699999999999999998753222 1234566666666778 99999999999 98643222111 1111111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+....|++|||+++..+++.++...+..+.. .-..+|||+|++|..+.
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCCh
Confidence 3478999999999987899988877665543 34689999999997654
No 53
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.10 E-value=2.8e-09 Score=87.58 Aligned_cols=139 Identities=9% Similarity=-0.053 Sum_probs=78.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+|++||||||+.|.+++.+......+. .+..+......++ .+..+.++||| |... ... ....
T Consensus 5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~l~D~~---g~~~-------~~~----~~~~ 68 (159)
T cd00154 5 LIGDSGVGKTSLLLRFVDGKFDENYKST--IGVDFKSKTIEIDGKTVKLQIWDTA---GQER-------FRS----ITPS 68 (159)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCccCCc--eeeeeEEEEEEECCEEEEEEEEecC---ChHH-------HHH----HHHH
Confidence 4799999999999999988754331111 1112222223330 23688999999 8632 111 1223
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
..+.++++++|+++. . .+....+..+...|-.. .-.+++|+.|+.|........ ...++.+....+
T Consensus 69 ~~~~~d~ii~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~ 136 (159)
T cd00154 69 YYRGAHGAILVYDIT-N--RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS---------TEEAQQFAKENG 136 (159)
T ss_pred HhcCCCEEEEEEECC-C--HHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc---------HHHHHHHHHHcC
Confidence 345789999999986 3 12122222222222222 246789999999986221011 123455666666
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
..|+..+-+.
T Consensus 137 ~~~~~~sa~~ 146 (159)
T cd00154 137 LLFFETSAKT 146 (159)
T ss_pred CeEEEEecCC
Confidence 6666666544
No 54
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.10 E-value=3.9e-10 Score=96.22 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=70.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEE------------EE--------------------------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRT------------ML-------------------------- 43 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~------------~~-------------------------- 43 (307)
+|.+++||||++|+|+|.+.+.++.. ++|.... ...+ .+
T Consensus 4 ~G~~ssGKSTliNaLlG~~ilp~~~~--~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T PF00350_consen 4 VGQFSSGKSTLINALLGRPILPSGVG--PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIEG 81 (168)
T ss_dssp EEBTTSSHHHHHHHHHTSS-SSSSSS--STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHhcccCccccc--ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccccc
Confidence 69999999999999999987765443 3333221 1111 00
Q ss_pred ----------------eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 044972 44 ----------------KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIH 107 (307)
Q Consensus 44 ----------------~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~ 107 (307)
+....+++|||| |+.++......+..+. + +..|++|+|+++...++..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lvDtP---G~~~~~~~~~~~~~~~---~----~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 82 KLEQISSKVIVISISSPLLRNLTLVDTP---GLNSTNSEHTEITEEY---L----PKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp SSS-S-SSEEEEEEEETTSCSEEEEEEE---EBHSSHTTTSHHHHHH---H----STTEEEEEEEETTSTGGGHHHHHHH
T ss_pred cccccccceeEEeeccccccceEEEeCC---ccccchhhhHHHHHHh---h----ccCCEEEEEeccCcccchHHHHHHH
Confidence 023569999999 9987554433322221 1 5679999999998668877766665
Q ss_pred HHHHhhccccCCeEEEEEec
Q 044972 108 SLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 108 ~i~~~FG~~~~~~~IVLfT~ 127 (307)
..... ....+|+|+|+
T Consensus 152 ~~~~~----~~~~~i~V~nk 167 (168)
T PF00350_consen 152 QMLDP----DKSRTIFVLNK 167 (168)
T ss_dssp HHHTT----TCSSEEEEEE-
T ss_pred HHhcC----CCCeEEEEEcC
Confidence 55543 34448888886
No 55
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=3.7e-09 Score=97.94 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCC-eEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEE
Q 044972 47 QVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGI-HAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMI 122 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGp-ha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~I 122 (307)
..++||||| |+++... ....+...|.+.+......+ +++|+|+++...++..+ ....+.+.. ..+.+|
T Consensus 125 ~~ltLIDlP---Gl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti 196 (240)
T smart00053 125 LNLTLIDLP---GITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTI 196 (240)
T ss_pred CceEEEeCC---CccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEE
Confidence 689999999 9985421 12334444544444433433 58999999876777766 344444443 478999
Q ss_pred EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972 123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD 170 (307)
Q Consensus 123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~ 170 (307)
+|+|+.|.++.. ..+-+.+.+ .. ...+-.||+.=|+..+
T Consensus 197 ~ViTK~D~~~~~-~~~~~~~~~-~~-------~~l~~g~~~v~nr~~~ 235 (240)
T smart00053 197 GVITKLDLMDEG-TDARDILEN-KL-------LPLRRGYIGVVNRSQK 235 (240)
T ss_pred EEEECCCCCCcc-HHHHHHHhC-Cc-------cccCCCEEEEECCChH
Confidence 999999998753 335555554 11 1245668877776543
No 56
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.09 E-value=1.5e-09 Score=91.56 Aligned_cols=109 Identities=13% Similarity=0.003 Sum_probs=70.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.+ |... ...+.|.........+. .+..+++|||| |..+. .. + ...
T Consensus 6 iG~~~~GKtsli~~l~~~~-~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtp---G~~~~-------~~-~---~~~ 69 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTN-VAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTP---GHEAF-------TN-M---RAR 69 (168)
T ss_pred EecCCCCHHHHHHHHHhcc-cccc-cCCCeEEeeccEEEecccCCcceEEEEeCC---CcHHH-------HH-H---HHH
Confidence 6999999999999999876 3322 12234444433333441 27899999999 96321 11 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..+..|++|+|+++......+....+..+.. .-.+.+||+|+.|...
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPN 116 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccc
Confidence 3467899999999874555555555555443 2357999999999654
No 57
>CHL00071 tufA elongation factor Tu
Probab=99.08 E-value=8e-10 Score=109.20 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc--------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV--------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~--------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.|+||+.....++. -..+.|..+......+ +++++++|||| |..
T Consensus 18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtP---Gh~------- 86 (409)
T CHL00071 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCP---GHA------- 86 (409)
T ss_pred ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECC---ChH-------
Confidence 6999999999999999853211110 0134455544444556 78999999999 842
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
+....+. .+..++|++|||+++...++.++...+..+..+ | ..+.||++|++|.... ..+.+.+.+
T Consensus 87 ~~~~~~~----~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g---~~~iIvvvNK~D~~~~--~~~~~~~~~---- 152 (409)
T CHL00071 87 DYVKNMI----TGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-G---VPNIVVFLNKEDQVDD--EELLELVEL---- 152 (409)
T ss_pred HHHHHHH----HHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEccCCCCH--HHHHHHHHH----
Confidence 2233333 334578999999998756888888877766542 3 4568899999998754 334444432
Q ss_pred hHHHHHHhcCC
Q 044972 149 PLKEILQLCDN 159 (307)
Q Consensus 149 ~Lk~Li~~Cg~ 159 (307)
.+..++..++.
T Consensus 153 ~l~~~l~~~~~ 163 (409)
T CHL00071 153 EVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHhCC
Confidence 57778877653
No 58
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.04 E-value=4.1e-09 Score=96.62 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=58.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|.|.|....... ....|..+..+...+ +|..+.++||| |+.+...........+ ....
T Consensus 6 vG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~Dtp---G~~~~~~~~~~~~~~~----l~~~ 75 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLP---GIIEGAADGKGRGRQV----IAVA 75 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECC---CcccccccchhHHHHH----HHhh
Confidence 699999999999999998754322 234566677777788 99999999999 9865332111222222 2345
Q ss_pred CCCeEEEEEEeCC
Q 044972 83 DGIHAVLIVFSVR 95 (307)
Q Consensus 83 pGpha~LLVl~~~ 95 (307)
..++++|+|+++.
T Consensus 76 ~~ad~il~V~D~t 88 (233)
T cd01896 76 RTADLILMVLDAT 88 (233)
T ss_pred ccCCEEEEEecCC
Confidence 6789999999764
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.03 E-value=2e-08 Score=84.20 Aligned_cols=138 Identities=10% Similarity=0.007 Sum_probs=80.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|+++|.+...+. ....|.+.......+ +|. .+.++||| |... ....+ .
T Consensus 5 liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~---G~~~-------~~~~~----~ 67 (161)
T cd01861 5 FLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTA---GQER-------FRSLI----P 67 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHHHH----H
Confidence 4799999999999999998743321 122333333444456 563 58999999 8421 11111 1
Q ss_pred hcCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++++|++++++ |+.- ...+..+....+. -..++|+.|+.|.......+ ...+..+.+..
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~---------~~~~~~~~~~~ 135 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVS---------TEEGEKKAKEL 135 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhccccCccC---------HHHHHHHHHHh
Confidence 223678999999998743 3322 2233334333332 46899999999975431111 12344555555
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+..+.+.
T Consensus 136 ~~~~~~~Sa~~ 146 (161)
T cd01861 136 NAMFIETSAKA 146 (161)
T ss_pred CCEEEEEeCCC
Confidence 55566555544
No 60
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.02 E-value=4.3e-09 Score=101.82 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=77.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|+|.+.+.-.+.. ...|.........+.++..++|+||| |+.+.......+.....+.
T Consensus 163 lVG~PNaGKSTLln~ls~a~~~va~y--pfTT~~p~~G~v~~~~~~~~~i~D~P---Gli~ga~~~~gLg~~flrh---- 233 (335)
T PRK12299 163 LVGLPNAGKSTLISAVSAAKPKIADY--PFTTLHPNLGVVRVDDYKSFVIADIP---GLIEGASEGAGLGHRFLKH---- 233 (335)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccCCC--CCceeCceEEEEEeCCCcEEEEEeCC---CccCCCCccccHHHHHHHH----
Confidence 37999999999999999876432221 12455566666666467899999999 9975432222233333332
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
..+.+++|+|+++.+.-+-++...+..-...+.+. .-+..|||+|+.|.+..
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 34678999999987322333333332222223333 24689999999997654
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.02 E-value=9.2e-09 Score=86.22 Aligned_cols=140 Identities=14% Similarity=-0.013 Sum_probs=79.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.+ |..... ..++.........+ +| ..+.++||| |... . ..+ ...
T Consensus 6 vG~~~vGKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~-------~-~~~---~~~ 68 (168)
T cd04119 6 MGNSGVGKSCIIKRYCEGR-FVSKYL-PTIGIDYGVKKVSV-RNKEVRVNFFDLS---GHPE-------Y-LEV---RNE 68 (168)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCC-CccceeEEEEEEEE-CCeEEEEEEEECC---ccHH-------H-HHH---HHH
Confidence 7999999999999999987 432221 12222222223334 44 477899999 8632 1 111 223
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc---ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK---KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL 156 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~---~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~ 156 (307)
...+.+++|||+++.++-+-+. ...+..+....++ ..-..+++|.|+.|..+....+ ....+.+...
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~ 139 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS---------EDEGRLWAES 139 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC---------HHHHHHHHHH
Confidence 3568999999999873322111 2233444444443 1346799999999976431011 1223444555
Q ss_pred cCCeEEEEcCCC
Q 044972 157 CDNRRVLFDNKT 168 (307)
Q Consensus 157 Cg~R~~~fnNk~ 168 (307)
.+..|+..+.++
T Consensus 140 ~~~~~~~~Sa~~ 151 (168)
T cd04119 140 KGFKYFETSACT 151 (168)
T ss_pred cCCeEEEEECCC
Confidence 555666666554
No 62
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.96 E-value=1.8e-08 Score=100.30 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=74.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|+|.+.+.-.+.. ...|.........+.++..++|+||| |+.........+.....+.
T Consensus 163 lVG~pNaGKSTLLn~Lt~ak~kIa~y--pfTTl~PnlG~v~~~~~~~~~laD~P---Gliega~~~~gLg~~fLrh---- 233 (424)
T PRK12297 163 LVGFPNVGKSTLLSVVSNAKPKIANY--HFTTLVPNLGVVETDDGRSFVMADIP---GLIEGASEGVGLGHQFLRH---- 233 (424)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccC--CcceeceEEEEEEEeCCceEEEEECC---CCcccccccchHHHHHHHH----
Confidence 37999999999999999977433221 23455566666666338899999999 9864221112233333222
Q ss_pred CCCCeEEEEEEeCCCC---CCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCC
Q 044972 82 KDGIHAVLIVFSVRNR---FSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDE 130 (307)
Q Consensus 82 ~pGpha~LLVl~~~~R---fT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~ 130 (307)
....+++|+|+++.+. -+-++ ......|.. +.+. .-+..|||+|+.|.
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~-y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKL-YNPRLLERPQIVVANKMDL 286 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhh-hchhccCCcEEEEEeCCCC
Confidence 2467999999998521 12222 333344444 3333 45789999999994
No 63
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.95 E-value=1.2e-08 Score=108.33 Aligned_cols=144 Identities=11% Similarity=-0.019 Sum_probs=92.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC-H-HHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD-F-EFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~-~-~~i~~eI~kcv~ 79 (307)
.+|.|||||||+.|.+.|.+...+. ..++|.+...+...+ ++..+.+|||| |.++.... . ....+.+.+ ..
T Consensus 8 LvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtP---G~ysl~~~~~~~s~~E~i~~-~~ 80 (772)
T PRK09554 8 LIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLP---GTYSLTTISSQTSLDEQIAC-HY 80 (772)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECC---CccccccccccccHHHHHHH-HH
Confidence 3799999999999999998764432 246676666667777 88999999999 98864321 1 122223332 22
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+....+|++++|++.. .+.. .......+.+ .-.++|+++|+.|..+.. .+. ..++.+-+..|-
T Consensus 81 l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e-----~giPvIvVlNK~Dl~~~~--~i~--------id~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDAS-NLER-NLYLTLQLLE-----LGIPCIVALNMLDIAEKQ--NIR--------IDIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCC-cchh-hHHHHHHHHH-----cCCCEEEEEEchhhhhcc--CcH--------HHHHHHHHHhCC
Confidence 3356799999999986 4432 2223333333 246899999999976442 111 124455556676
Q ss_pred eEEEEcCCCC
Q 044972 160 RRVLFDNKTK 169 (307)
Q Consensus 160 R~~~fnNk~~ 169 (307)
.++.++-+..
T Consensus 144 pVvpiSA~~g 153 (772)
T PRK09554 144 PVIPLVSTRG 153 (772)
T ss_pred CEEEEEeecC
Confidence 7776665543
No 64
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.95 E-value=4.4e-08 Score=82.10 Aligned_cols=138 Identities=13% Similarity=0.036 Sum_probs=78.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+. .... ...++.........+ +| ..+.++||| |.. ...... .
T Consensus 5 v~G~~~~GKTtli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~-------~~~~~~----~ 67 (164)
T smart00175 5 LIGDSGVGKSSLLSRFTDGKF-SEQY-KSTIGVDFKTKTIEV-DGKRVKLQIWDTA---GQE-------RFRSIT----S 67 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeEEEEEEEEE-CCEEEEEEEEECC---ChH-------HHHHHH----H
Confidence 479999999999999998864 2221 112222223334455 66 478899999 842 111111 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh--hccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL--FGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~--FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|+++||+++.+.-|-++ +..++..+ +.. --..++|+.|+.|..... .+ .....+.+.+.+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~--~~-------~~~~~~~~~~~~ 135 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFEN--LKNWLKELREYAD-PNVVIMLVGNKSDLEDQR--QV-------SREEAEAFAEEH 135 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCC-CCCeEEEEEEchhccccc--CC-------CHHHHHHHHHHc
Confidence 23357899999999863222222 22232221 111 246899999999965421 10 112344556667
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+..+-+.
T Consensus 136 ~~~~~e~Sa~~ 146 (164)
T smart00175 136 GLPFFETSAKT 146 (164)
T ss_pred CCeEEEEeCCC
Confidence 76666666544
No 65
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.95 E-value=1.6e-08 Score=84.71 Aligned_cols=113 Identities=10% Similarity=-0.087 Sum_probs=68.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+.+...|..... .|.........+ ++..+.++||| |.... ........
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~---G~~~~-----------~~~~~~~~ 66 (162)
T cd04157 5 VGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMS---GQGKY-----------RGLWEHYY 66 (162)
T ss_pred ECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECC---CCHhh-----------HHHHHHHH
Confidence 69999999999999999764443222 222232333445 78899999999 86421 11112234
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~ 133 (307)
.+.+++|||+++..+.+-.. ...+..+....+- ..-.+++||+|+.|....
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 68999999999863332111 1122223221111 124579999999997543
No 66
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.95 E-value=9e-09 Score=90.43 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCCCCCcHHHHHHHHHCCC---cccccc--CCCCCCceeEEEEEEEeC--------------CeEEEEEeCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRR---AFKSKV--GSSEDTKTCEMQRTMLKD--------------GQVVNVIDTPAIARLFDS 63 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~---~F~s~~--s~~svT~~c~~~~~~~~~--------------Gr~v~VIDTP~~~Gl~Dt 63 (307)
+|++|+||||++|.+++.. .|.... ...+.|..+......+ . +..++++||| |..
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dtp---G~~-- 79 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYV-DKPKHLRELINPGEENLQITLVDCP---GHA-- 79 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEe-cccccccccccccccCceEEEEECC---CcH--
Confidence 6999999999999999842 121100 0112344444344444 3 7799999999 963
Q ss_pred CcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 64 SADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 64 ~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
. +.+.+......+|++++|+++....+..+...+... ..+ ..+.+|++|+.|....
T Consensus 80 -----~----~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 80 -----S----LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EIL----CKKLIVVLNKIDLIPE 135 (192)
T ss_pred -----H----HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHc----CCCEEEEEECcccCCH
Confidence 1 222233344678999999998755655554444332 222 2478999999998754
No 67
>PRK04213 GTP-binding protein; Provisional
Probab=98.94 E-value=2e-08 Score=88.40 Aligned_cols=116 Identities=17% Similarity=0.090 Sum_probs=69.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~~eI~kcv 78 (307)
+|.+||||||++|.|.|.. |..... .++|..+. ...+ + .+.++||| |+.+.... .+.+...+..++
T Consensus 15 ~G~~~~GKSsLin~l~~~~-~~~~~~-~~~t~~~~--~~~~-~--~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 15 VGRSNVGKSTLVRELTGKK-VRVGKR-PGVTRKPN--HYDW-G--DFILTDLP---GFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred ECCCCCCHHHHHHHHhCCC-CccCCC-CceeeCce--EEee-c--ceEEEeCC---ccccccccCHHHHHHHHHHHHHHH
Confidence 5999999999999999986 543322 23444332 2333 3 79999999 87543321 122333333333
Q ss_pred HhcCCCCeEEEEEEeCCC------CC-----CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRN------RF-----SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~------Rf-----T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.....+++++++|++... ++ ...+...+..+.. .-...+||+|+.|....
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCc
Confidence 334567899999998752 11 1123333333332 23578999999996543
No 68
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.94 E-value=1e-08 Score=96.21 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=76.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccc----------------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSK----------------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~----------------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+||||+.|.||...--... .-..+.|..+......| .+.++++|||| |..|
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~d---- 76 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTP---GHVD---- 76 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECC---CcHH----
Confidence 699999999999999842110000 01124555666677789 99999999999 9765
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...++..++ ...|++|||+++.......+...+..+.. .-...||++++.|...
T Consensus 77 ---f~~~~~~~l----~~aD~ailVVDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 ---FTIEVERSL----RVLDGAVAVFDAVAGVEPQTETVWRQADR-----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred ---HHHHHHHHH----HHcCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 222333333 45689999999875677777777766654 2356789999999764
No 69
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.93 E-value=1.8e-08 Score=85.21 Aligned_cols=114 Identities=10% Similarity=-0.073 Sum_probs=70.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC--CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG--SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s--~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.|++......+.. ....|.........+ ++..+.++||| |..+- ......
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~-----------~~~~~~ 69 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLG---GQESL-----------RSLWDK 69 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECC---CChhh-----------HHHHHH
Confidence 69999999999999988532211111 112344444556677 88999999999 97431 111222
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
...++|+++||+++.+.- .-.....++..++... .-.++||+.|+.|....
T Consensus 70 ~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 70 YYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 356899999999876221 1222334444444321 23579999999996543
No 70
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.93 E-value=1.2e-08 Score=98.43 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=74.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.|||||||++|.|.+.+.-.+.. ...|.........+ ++ ..++|+||| |+.+.......+.....+.+
T Consensus 163 vG~pnaGKSTLl~~lt~~~~~va~y--~fTT~~p~ig~v~~-~~~~~~~i~D~P---Gli~~a~~~~gLg~~flrhi--- 233 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVIADIP---GLIEGASEGAGLGHRFLKHI--- 233 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCccccCC--CCCccCCEEEEEEe-CCceEEEEEeCC---CcccCCcccccHHHHHHHHH---
Confidence 7999999999999999876422221 12355566666677 55 999999999 98643222222333333322
Q ss_pred CCCCeEEEEEEeCCCCC----CHHHHHH-HHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRF----SEEEGAA-IHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~Rf----T~ee~~~-l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
.+.+++|+|+++. .. +-++... .+.+.. +.+. .-+..|||+|+.|.+..
T Consensus 234 -erad~ll~VvD~s-~~~~~~~~e~l~~l~~EL~~-~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 234 -ERTRVLLHLIDIS-PLDGRDPIEDYEIIRNELKK-YSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred -HhhCEEEEEEcCc-cccccCHHHHHHHHHHHHHH-hhhhhccCCEEEEEeCccCCCh
Confidence 4578999999987 33 1122222 222322 3332 34689999999997654
No 71
>PRK12735 elongation factor Tu; Reviewed
Probab=98.93 E-value=9e-09 Score=101.33 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=84.3
Q ss_pred CCCCCCCcHHHHHHHHHCC------Cccccc--------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972 2 CACEYIKICTTTGNSILGR------RAFKSK--------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF 67 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~------~~F~s~--------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~ 67 (307)
-+|.+++|||||.|.|++. ..|... .-..+.|..+......+ +++++++|||| |..
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtP---Gh~------ 86 (396)
T PRK12735 17 TIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCP---GHA------ 86 (396)
T ss_pred EECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECC---CHH------
Confidence 3799999999999999972 222100 00234555554444556 78899999999 852
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCC
Q 044972 68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP 147 (307)
Q Consensus 68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~ 147 (307)
+ +.+.+..+...+|++|||+++...+..+....+..+.. .| ..++||++|+.|.... ..+.+.+.
T Consensus 87 -~----f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g---i~~iivvvNK~Dl~~~--~~~~~~~~---- 151 (396)
T PRK12735 87 -D----YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVDD--EELLELVE---- 151 (396)
T ss_pred -H----HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEEEecCCcch--HHHHHHHH----
Confidence 2 22333344568999999999875577776666655442 23 4556678999998743 22333333
Q ss_pred chHHHHHHhcC
Q 044972 148 KPLKEILQLCD 158 (307)
Q Consensus 148 ~~Lk~Li~~Cg 158 (307)
..+..+++.++
T Consensus 152 ~ei~~~l~~~~ 162 (396)
T PRK12735 152 MEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHcC
Confidence 24677777765
No 72
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.92 E-value=3.5e-08 Score=81.19 Aligned_cols=110 Identities=18% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.|.|.+ |.... ..|.......... ++..+.++||| |... ..... ....
T Consensus 5 ~G~~~~GKssl~~~l~~~~-~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~---g~~~-------~~~~~----~~~~ 65 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQ-FSEDT---IPTVGFNMRKVTK-GNVTLKVWDLG---GQPR-------FRSMW----ERYC 65 (159)
T ss_pred EcCCCCCHHHHHHHHccCC-CCcCc---cCCCCcceEEEEE-CCEEEEEEECC---CCHh-------HHHHH----HHHH
Confidence 6999999999999999975 43222 1232233333445 67889999999 8532 11111 2234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.++|++|+|+++. ....- ......+..++-.. .-..++||+|+.|....
T Consensus 66 ~~~d~ii~v~d~~-~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAA-DRTAL-EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECC-CHHHH-HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 6789999999886 32211 11223333333221 23468999999997654
No 73
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.92 E-value=1.6e-08 Score=86.83 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=69.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.|+|.. |.. ...|.........+ ++..+.|+||| |.... ... .....
T Consensus 20 vG~~~~GKTsL~~~l~~~~-~~~----~~~t~g~~~~~~~~-~~~~l~l~D~~---G~~~~-------~~~----~~~~~ 79 (173)
T cd04154 20 LGLDNAGKTTILKKLLGED-IDT----ISPTLGFQIKTLEY-EGYKLNIWDVG---GQKTL-------RPY----WRNYF 79 (173)
T ss_pred ECCCCCCHHHHHHHHccCC-CCC----cCCccccceEEEEE-CCEEEEEEECC---CCHHH-------HHH----HHHHh
Confidence 6999999999999999874 221 12233333444566 88899999999 86421 111 11234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|+++||+++.++-+-+ ....++..++... .-.+++||.|+.|..+.
T Consensus 80 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLD--DCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred CCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 6899999999987431111 2233444444321 34689999999997543
No 74
>PRK00049 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.1e-08 Score=100.86 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=85.2
Q ss_pred CCCCCCcHHHHHHHHHCCC-------ccccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRR-------AFKSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-------~F~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.+.|++.. .+.+. .-..+.|..+......+ +++++++|||| |..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtP---G~~------- 86 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCP---GHA------- 86 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECC---CHH-------
Confidence 6999999999999999831 11000 00234555554444556 78899999999 863
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
+ +...+..+..++|++|||+++...++.+++..+..+.. +| ..++||++|++|.... ..+.+.+. .
T Consensus 87 ~----f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g---~p~iiVvvNK~D~~~~--~~~~~~~~----~ 152 (396)
T PRK00049 87 D----YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVDD--EELLELVE----M 152 (396)
T ss_pred H----HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cC---CCEEEEEEeecCCcch--HHHHHHHH----H
Confidence 2 22333344568999999999875678888777776654 33 3456678999998743 22323332 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.+..++..++
T Consensus 153 ~i~~~l~~~~ 162 (396)
T PRK00049 153 EVRELLSKYD 162 (396)
T ss_pred HHHHHHHhcC
Confidence 4677777765
No 75
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.91 E-value=1.2e-08 Score=85.85 Aligned_cols=112 Identities=13% Similarity=0.032 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
++|++||||||++|.+++.. |.....+ ..+.+.......+ ++ ..+.++||| |..... .. ..
T Consensus 5 v~G~~~~GKSsli~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~~-------~~----~~ 67 (161)
T cd01863 5 LIGDSGVGKSSLLLRFTDDT-FDPDLAA-TIGVDFKVKTLTV-DGKKVKLAIWDTA---GQERFR-------TL----TS 67 (161)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCcccCC-cccceEEEEEEEE-CCEEEEEEEEECC---Cchhhh-------hh----hH
Confidence 57999999999999999876 3322111 1222222223334 44 478999999 853211 11 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.|++|+|+++.++-+-+... .+..+... ....-...+||.|+.|..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETY-STNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHh-CCCCCCcEEEEEECCccc
Confidence 2235789999999986322222211 22223332 223345578889999876
No 76
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.91 E-value=8.7e-09 Score=90.47 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=77.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccc----------------cCCCCCCceeEEEEEE--EeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSK----------------VGSSEDTKTCEMQRTM--LKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~----------------~s~~svT~~c~~~~~~--~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|++|+|||||.+.|++....... ......|......... . +++.+++|||| |..
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtP---G~~--- 81 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTP---GHE--- 81 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEES---SSH---
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccc---ccc---
Confidence 699999999999999976422110 0012344444445555 6 89999999999 852
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
+...++..+ ...+|++|||+++...++......+..+... -..+||++|+.|.+
T Consensus 82 ----~f~~~~~~~----~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 ----DFIKEMIRG----LRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp ----HHHHHHHHH----HTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred ----ceeecccce----ecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccch
Confidence 344455544 3468999999998767888888888887653 34599999999998
No 77
>PLN03127 Elongation factor Tu; Provisional
Probab=98.90 E-value=1.4e-08 Score=101.75 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=86.7
Q ss_pred CCCCCCcHHHHHHHHHC------CCc-cccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILG------RRA-FKSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG------~~~-F~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.|.|+| +.. +.+. ....+.|..+......+ +++++++|||| |..+
T Consensus 67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtP---Gh~~------ 136 (447)
T PLN03127 67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCP---GHAD------ 136 (447)
T ss_pred ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECC---Cccc------
Confidence 69999999999999984 321 1110 01145666666566666 88999999999 9743
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
....+.. ....+|++|||+++...++.+++..+..+..+ | ..+.||++|++|.++. ..+.+.+. .
T Consensus 137 -f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g---ip~iIvviNKiDlv~~--~~~~~~i~----~ 201 (447)
T PLN03127 137 -YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVVFLNKVDVVDD--EELLELVE----M 201 (447)
T ss_pred -hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCeEEEEEEeeccCCH--HHHHHHHH----H
Confidence 1222222 23469999999998756788888777776643 2 4567889999998754 23334343 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.+++++..++
T Consensus 202 ~i~~~l~~~~ 211 (447)
T PLN03127 202 ELRELLSFYK 211 (447)
T ss_pred HHHHHHHHhC
Confidence 4667776654
No 78
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.90 E-value=4e-08 Score=84.47 Aligned_cols=140 Identities=14% Similarity=0.009 Sum_probs=80.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.+.|. |..... .|.........+ ++..+.++||| |-.. .. .+ ....
T Consensus 4 ~~G~~~~GKTsl~~~l~~~--~~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~---G~~~-------~~-~~---~~~~ 63 (167)
T cd04161 4 TVGLDNAGKTTLVSALQGE--IPKKVA---PTVGFTPTKLRL-DKYEVCIFDLG---GGAN-------FR-GI---WVNY 63 (167)
T ss_pred EECCCCCCHHHHHHHHhCC--CCcccc---CcccceEEEEEE-CCEEEEEEECC---CcHH-------HH-HH---HHHH
Confidence 4799999999999999987 543222 222233344556 78899999999 8421 11 11 1223
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
..+.|+++||+++.++-+- ..+..++..++... .-.+++||.|+.|.... .+..+.+.. -.+..+.+..+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~---~~l~~~~~~~~~ 136 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEY---LSLEKLVNENKS 136 (167)
T ss_pred HcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHh---cCcccccCCCCc
Confidence 4688999999998633221 22233444444332 23578999999986543 333333321 123444444455
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.++++.-.+
T Consensus 137 ~~~~~~~Sa 145 (167)
T cd04161 137 LCHIEPCSA 145 (167)
T ss_pred eEEEEEeEc
Confidence 556664433
No 79
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.90 E-value=1.3e-08 Score=92.90 Aligned_cols=102 Identities=14% Similarity=-0.022 Sum_probs=69.6
Q ss_pred CCCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
-+|++++|||+++|.|+|. ..|..+....++|+........++ .+..|++|||| |++|+..+.......+. ++
T Consensus 12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDte---G~~~~~~~~~~~~~~~~-~l 87 (224)
T cd01851 12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTE---GTDGRERGEFEDDARLF-AL 87 (224)
T ss_pred EECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecC---CcCccccCchhhhhHHH-HH
Confidence 4799999999999999998 579887776777776655554442 25799999999 99998765411111111 11
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES 111 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~ 111 (307)
... =.+++|+.+.. .....+...+..+.+
T Consensus 88 ~~l--lss~~i~n~~~--~~~~~~~~~l~~~~~ 116 (224)
T cd01851 88 ATL--LSSVLIYNSWE--TILGDDLAALMGLLK 116 (224)
T ss_pred HHH--HhCEEEEeccC--cccHHHHHHHHHHHH
Confidence 110 14577777764 567777777766655
No 80
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.90 E-value=1.9e-08 Score=86.01 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=64.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |....+. ..+.+-......+ +| ..+.|+||| |.. . +..-..
T Consensus 9 vvG~~~vGKSsLl~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~-------~----~~~~~~ 71 (168)
T cd01866 9 IIGDTGVGKSCLLLQFTDKR-FQPVHDL-TIGVEFGARMITI-DGKQIKLQIWDTA---GQE-------S----FRSITR 71 (168)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCCCC-ccceeEEEEEEEE-CCEEEEEEEEECC---CcH-------H----HHHHHH
Confidence 47999999999999999876 3222221 1111111222334 44 478999999 831 1 111122
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~ 133 (307)
....++|++|||+++.++-+ -..+..++..+-.. ..-..+|||.|+.|....
T Consensus 72 ~~~~~~d~il~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 72 SYYRGAAGALLVYDITRRET--FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 33468999999999863222 12222333322111 123468999999987643
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.90 E-value=3.7e-08 Score=82.90 Aligned_cols=140 Identities=13% Similarity=0.022 Sum_probs=79.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |....++ ..+.........+ +| ..+.++||| |... .. .+. .
T Consensus 5 v~G~~~vGKTsli~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~l~D~~---G~~~-------~~-~~~---~ 67 (161)
T cd04113 5 IIGSSGTGKSCLLHRFVENK-FKEDSQH-TIGVEFGSKIIRV-GGKRVKLQIWDTA---GQER-------FR-SVT---R 67 (161)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCCC-ceeeeEEEEEEEE-CCEEEEEEEEECc---chHH-------HH-HhH---H
Confidence 36999999999999999875 3322211 1221122223344 55 367899999 8522 11 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....++|++|+|+++.++-+-+. ...+..++...+++ ..++|+.|+.|..... .+ .......+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~--~~-------~~~~~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQR--EV-------TFLEASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhc--cC-------CHHHHHHHHHHcC
Confidence 23457999999999874333222 22233334343333 4689999999976431 11 1223455566666
Q ss_pred CeEEEEcCCCC
Q 044972 159 NRRVLFDNKTK 169 (307)
Q Consensus 159 ~R~~~fnNk~~ 169 (307)
-.|+-.+-++.
T Consensus 137 ~~~~~~Sa~~~ 147 (161)
T cd04113 137 LLFLETSALTG 147 (161)
T ss_pred CEEEEEECCCC
Confidence 66666665543
No 82
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.89 E-value=7.1e-09 Score=98.66 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=78.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH-HHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQVVNVIDTPAIARLFDSSADFEF-VSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~-i~~eI~kcv~l 80 (307)
.|.||+||||+.|.++|.++|.+ |.+.-|++|+ .+..+- +..+++++||| |+-.+...... ....+..-..-
T Consensus 78 IG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts-~eTQlvf~DTP---Glvs~~~~r~~~l~~s~lq~~~~ 151 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITS-GETQLVFYDTP---GLVSKKMHRRHHLMMSVLQNPRD 151 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEec-CceEEEEecCC---cccccchhhhHHHHHHhhhCHHH
Confidence 59999999999999999999875 4566677774 455555 77899999999 99876532221 11122223344
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+....|++++|+++.+.=+.-.-..+..+..+ ..-..|+|.+..|.+..
T Consensus 152 a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y----s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASATRTPLHPRVLHMLEEY----SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHhhCCEEEEEEeccCCcCccChHHHHHHHHH----hcCCceeeccchhcchh
Confidence 45568899999988632222233445555543 23356666666665543
No 83
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.89 E-value=9.6e-09 Score=101.70 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=85.2
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+++|||||.|.||+.....+.. -..+.|..+......+ ++..+++||
T Consensus 12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~~i~liD 90 (425)
T PRK12317 12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKYYFTIVD 90 (425)
T ss_pred ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCeEEEEEE
Confidence 6999999999999999553322110 0346788887778888 999999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCC--CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRN--RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~--RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|| |..+. ...+. ....++|++|||+++.. .+..+....+..+. .+| ..+.||++|+.|..
T Consensus 91 tp---G~~~~-------~~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivviNK~Dl~ 152 (425)
T PRK12317 91 CP---GHRDF-------VKNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAINKMDAV 152 (425)
T ss_pred CC---Ccccc-------hhhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEEEccccc
Confidence 99 95321 11121 22357999999999875 45555555554443 344 25789999999976
Q ss_pred CCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 132 EDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
......++. + ...++.+++.+|
T Consensus 153 ~~~~~~~~~-~----~~~i~~~l~~~g 174 (425)
T PRK12317 153 NYDEKRYEE-V----KEEVSKLLKMVG 174 (425)
T ss_pred cccHHHHHH-H----HHHHHHHHHhhC
Confidence 421111221 1 224666776665
No 84
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.89 E-value=2.2e-08 Score=92.17 Aligned_cols=133 Identities=20% Similarity=0.140 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+||||||+.|.||.......... ....|-........| ++..+++|||| |..+.
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTP---G~~~f--- 77 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTP---GHMDF--- 77 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCC---Cccch---
Confidence 69999999999999997533221110 011222334455678 89999999999 98652
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPEC 146 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~ 146 (307)
..++..+ ..+.|+++||+++...+.......+..+.. . -...+|++|+.|.... ..+
T Consensus 78 ----~~~~~~~----l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~----~~P~iivvNK~D~~~a---~~~------- 134 (237)
T cd04168 78 ----IAEVERS----LSVLDGAILVISAVEGVQAQTRILWRLLRK-L----NIPTIIFVNKIDRAGA---DLE------- 134 (237)
T ss_pred ----HHHHHHH----HHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccccCC---CHH-------
Confidence 1223332 246799999999876666655555555543 2 3467899999996543 222
Q ss_pred CchHHHHHHhcCCeEEEEcC
Q 044972 147 PKPLKEILQLCDNRRVLFDN 166 (307)
Q Consensus 147 ~~~Lk~Li~~Cg~R~~~fnN 166 (307)
..+.++-+.++.+.+.+.-
T Consensus 135 -~~~~~i~~~~~~~~~~~~~ 153 (237)
T cd04168 135 -KVYQEIKEKLSSDIVPMQK 153 (237)
T ss_pred -HHHHHHHHHHCCCeEEEEC
Confidence 2455666777777777763
No 85
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.89 E-value=1.6e-08 Score=86.06 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=68.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.+ |.....+...+.......... ....+.++||| |..... .+ . ....
T Consensus 7 vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~----~~----~---~~~~ 70 (165)
T cd04140 7 FGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCSK-NICTLQITDTT---GSHQFP----AM----Q---RLSI 70 (165)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCcCCcchheEEEEEEECC-EEEEEEEEECC---CCCcch----HH----H---HHHh
Confidence 7999999999999999876 532221111111111111112 23467899999 875321 11 1 1234
Q ss_pred CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|||+++.++-+-+. ...+..+....+.. .-..+|||.|+.|...
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 57899999999875444433 33455566665543 2347889999998754
No 86
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.89 E-value=1.4e-08 Score=89.43 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+||||||++|.+++. ..|..... ..+.|..+......+ ++..+.++||| |..+
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~------ 77 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTP---GHAD------ 77 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECC---CcHH------
Confidence 699999999999999974 34543321 123333444445566 78899999999 9743
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+. ....++|++++|+++...........+..+.. .-...+||+|+.|....
T Consensus 78 -~~~~~~----~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -FGGEVE----RVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred -HHHHHH----HHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 112222 23457899999999874443433333333222 23468899999997643
No 87
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.8e-07 Score=87.15 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=95.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCcccc----ccCCC-CCCceeEEEEEEE-eCC--eEEEEEeCCCCCCCCCCCcC---H---
Q 044972 2 CACEYIKICTTTGNSILGRRAFKS----KVGSS-EDTKTCEMQRTML-KDG--QVVNVIDTPAIARLFDSSAD---F--- 67 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s----~~s~~-svT~~c~~~~~~~-~~G--r~v~VIDTP~~~Gl~Dt~~~---~--- 67 (307)
+||+.|.||||++|||++...... ..+.. ..|.........+ ++| -.++||||| ||.|.-.. -
T Consensus 26 vvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtP---GfGD~vdns~~w~pi 102 (366)
T KOG2655|consen 26 VVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTP---GFGDAVDNSNCWRPI 102 (366)
T ss_pred EecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccC---CCcccccccccchhh
Confidence 689999999999999999853321 01111 1133333333333 144 488999999 99874211 1
Q ss_pred -HHHHHHHHHHHH---------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972 68 -EFVSKEIVKCIG---------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE 136 (307)
Q Consensus 68 -~~i~~eI~kcv~---------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~ 136 (307)
..+.......+. .....+|+.|+-++.. ..+.+-|...++.+.. .-++|-|+.++|.|.. .
T Consensus 103 ~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~------~vNiIPVI~KaD~lT~--~ 174 (366)
T KOG2655|consen 103 VNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK------KVNLIPVIAKADTLTK--D 174 (366)
T ss_pred hHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc------cccccceeeccccCCH--H
Confidence 112222222222 1122789999999753 3589999888888875 4588999999999976 4
Q ss_pred cHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972 137 TLEDYLGPECPKPLKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~ 168 (307)
-+..|-. .+.+.|..+.=+++.|.--.
T Consensus 175 El~~~K~-----~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 175 ELNQFKK-----RIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHH-----HHHHHHHHcCcceecCCCCc
Confidence 4444432 35666777777777776543
No 88
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.88 E-value=2.7e-08 Score=80.92 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||+.|.|++.. |..... .+.|.......... ++ ..+.++||| |..+.. ....
T Consensus 6 ~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~----~~~~------- 68 (161)
T TIGR00231 6 IVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTA---GQEDYR----AIRR------- 68 (161)
T ss_pred EECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECC---Ccccch----HHHH-------
Confidence 37999999999999999998 654332 34455555544566 77 788999999 853321 1111
Q ss_pred hcCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRN---RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~---RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
......+++++++++.. .++.........+.... .. -..++|++|+.|....
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-cc-CCcEEEEEEcccCCcc
Confidence 11123345555554431 12222222333333332 21 4468999999998654
No 89
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.87 E-value=2.6e-08 Score=100.94 Aligned_cols=121 Identities=10% Similarity=0.004 Sum_probs=75.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|.|.+.+.-.+.. ...|.....+...+ ++..++|+||| ||.+.......+..+..+. .
T Consensus 165 VG~PNAGKSTLln~Ls~akpkIady--pfTTl~P~lGvv~~-~~~~f~laDtP---Gliegas~g~gLg~~fLrh----i 234 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKPKIADY--PFTTLVPNLGVVQA-GDTRFTVADVP---GLIPGASEGKGLGLDFLRH----I 234 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCcccccc--CcccccceEEEEEE-CCeEEEEEECC---CCccccchhhHHHHHHHHH----H
Confidence 6999999999999999976543322 23455556666677 78899999999 9975332222233333322 2
Q ss_pred CCCeEEEEEEeCCC----CCCHHHHHHHH-HHHHhhc---------cccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRN----RFSEEEGAAIH-SLESLFG---------KKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~----RfT~ee~~~l~-~i~~~FG---------~~~~~~~IVLfT~~D~L~~ 133 (307)
...+++|+|+++.+ +-.-++...+. .|..+.- .-..+..|||+|+.|..+.
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 45789999999852 11112222222 2332221 2245789999999997543
No 90
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.87 E-value=5.4e-08 Score=81.69 Aligned_cols=109 Identities=11% Similarity=-0.062 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.++|.. +... ..|.........+ ++..+.++||| |...- .. ......
T Consensus 5 iG~~~~GKssli~~~~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~D~~---G~~~~----~~-------~~~~~~ 64 (158)
T cd00878 5 LGLDGAGKTTILYKLKLGE-VVTT----IPTIGFNVETVEY-KNVSFTVWDVG---GQDKI----RP-------LWKHYY 64 (158)
T ss_pred EcCCCCCHHHHHHHHhcCC-CCCC----CCCcCcceEEEEE-CCEEEEEEECC---CChhh----HH-------HHHHHh
Confidence 6999999999999999987 3322 2222333344556 78899999999 85421 11 112233
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|+|+++.++ ..-..+...+..++.. ..-..++|+.|+.|....
T Consensus 65 ~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 65 ENTNGIIFVVDSSDR--ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred ccCCEEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 567999999998622 1111223334443332 134588999999997764
No 91
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.86 E-value=5e-08 Score=101.34 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=76.7
Q ss_pred CCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+++||||++|.+.|.+. |... ...+.|..........++|+.+.+|||| |. +... +.+..
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE-~~rGiTI~l~~~~~~~~~g~~i~~IDtP---Gh-------e~fi----~~m~~ 70 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEE-KKRGMTIDLGYAYWPQPDGRVLGFIDVP---GH-------EKFL----SNMLA 70 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhc-ccCCceEEeeeEEEecCCCcEEEEEECC---CH-------HHHH----HHHHH
Confidence 79999999999999999642 3211 1124454443333334478899999999 85 2222 22334
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...++|++|||++++..+.++....+..+. .+| ..+.|||+|+.|..+.
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQ-LTG---NPMLTVALTKADRVDE 119 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCccCCH
Confidence 456899999999998667787777776554 344 4567899999998754
No 92
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.86 E-value=3.9e-08 Score=87.81 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEe--------------------------CC------eEE
Q 044972 3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLK--------------------------DG------QVV 49 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~--------------------------~G------r~v 49 (307)
+|+.|+||||+...|.|... +.......+.|-.|......|. .| +.+
T Consensus 6 ~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (203)
T cd01888 6 IGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHV 85 (203)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEE
Confidence 69999999999999988621 2111111122222222221220 13 899
Q ss_pred EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972 50 NVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVVFTRG 128 (307)
Q Consensus 50 ~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~ 128 (307)
++|||| |- +. +...+..+..++|++|||+++... ...+....+..+.. .| ..++|||+|+.
T Consensus 86 ~~iDtP---G~-------~~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvNK~ 147 (203)
T cd01888 86 SFVDCP---GH-------EI----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQNKI 147 (203)
T ss_pred EEEECC---Ch-------HH----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEEch
Confidence 999999 83 22 333344455688999999998732 33343444444422 22 25789999999
Q ss_pred CCCCC
Q 044972 129 DELED 133 (307)
Q Consensus 129 D~L~~ 133 (307)
|....
T Consensus 148 Dl~~~ 152 (203)
T cd01888 148 DLVKE 152 (203)
T ss_pred hccCH
Confidence 97653
No 93
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.86 E-value=3e-08 Score=92.12 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=69.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+||||||+.|.|++.......... ...|-........| ++..+++|||| |..+
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtP---G~~~---- 76 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTP---GYAD---- 76 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECc---CHHH----
Confidence 699999999999999864321111000 01122223445677 89999999999 8753
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...++..++ ...|++|+|+++...........+..+.. .-...+|++|+.|....
T Consensus 77 ---f~~~~~~~l----~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ---FVGETRAAL----RAADAALVVVSAQSGVEVGTEKLWEFADE-----AGIPRIIFINKMDRERA 131 (268)
T ss_pred ---HHHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence 122233333 36789999999875555554555554432 23468889999997643
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.86 E-value=2.9e-08 Score=82.69 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=66.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|++++...-.. ...+.+.........+ .|. .+.++||| |-... .....
T Consensus 5 i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~~-----------~~~~~ 67 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNI-GGKRIDLAIWDTA---GQERY-----------HALGP 67 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEE-CCEEEEEEEEECC---chHHH-----------HHhhH
Confidence 369999999999999998763221 1112222232333344 454 68899999 83211 11111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|+|+++.++-+-++. ..+..+...... -..++||+|+.|....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~ 120 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ 120 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 223578999999998633222221 223344444333 4579999999997643
No 95
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.86 E-value=5.8e-08 Score=100.44 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhcC
Q 044972 4 CEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 4 ~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls~ 82 (307)
|.|||||||+.|.+.|.+. .++. ..++|.........+ +|.++.++||| |..+... +.+ +.+.+- ....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n-~pG~Tv~~~~~~i~~-~~~~i~lvDtP---G~~~~~~~s~~---e~v~~~-~l~~ 70 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGN-WPGVTVEKKEGKLGF-QGEDIEIVDLP---GIYSLTTFSLE---EEVARD-YLLN 70 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecC-CCCeEEEEEEEEEEE-CCeEEEEEECC---CccccCccchH---HHHHHH-HHhh
Confidence 8999999999999999874 3332 335666666667778 89999999999 9876432 221 122221 1234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
.++|++++|++.. .+... ...+..+.+ .-..++|+.|+.|..+.. .+. ...+.+-+..|-.++
T Consensus 71 ~~aDvvI~VvDat-~ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~--~i~--------~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 71 EKPDLVVNVVDAS-NLERN-LYLTLQLLE-----LGIPMILALNLVDEAEKK--GIR--------IDEEKLEERLGVPVV 133 (591)
T ss_pred cCCCEEEEEecCC-cchhh-HHHHHHHHh-----cCCCEEEEEehhHHHHhC--CCh--------hhHHHHHHHcCCCEE
Confidence 5799999999986 54322 222222222 246899999999975431 111 123455555665666
Q ss_pred EEcCCC
Q 044972 163 LFDNKT 168 (307)
Q Consensus 163 ~fnNk~ 168 (307)
...-++
T Consensus 134 ~tSA~t 139 (591)
T TIGR00437 134 PTSATE 139 (591)
T ss_pred EEECCC
Confidence 555544
No 96
>PRK12736 elongation factor Tu; Reviewed
Probab=98.85 E-value=2.5e-08 Score=98.19 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCCCcHHHHHHHHHCCC------ccccc--------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRR------AFKSK--------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~------~F~s~--------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.+.|+|.. .|... .-..+.|..+....... +++.+++|||| |..
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtP---Gh~------- 86 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCP---GHA------- 86 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECC---CHH-------
Confidence 6999999999999999731 11100 00234565554444555 78899999999 842
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
+....+. .+..++|++|||+++...+..++...+..+..+ | ..+.||++|++|.... ..+.+.+. .
T Consensus 87 ~f~~~~~----~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~~~--~~~~~~i~----~ 152 (394)
T PRK12736 87 DYVKNMI----TGAAQMDGAILVVAATDGPMPQTREHILLARQV-G---VPYLVVFLNKVDLVDD--EELLELVE----M 152 (394)
T ss_pred HHHHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCEEEEEEEecCCcch--HHHHHHHH----H
Confidence 2223332 334578999999998755777777777766543 2 4568899999997643 33444443 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.++.++...+
T Consensus 153 ~i~~~l~~~~ 162 (394)
T PRK12736 153 EVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhC
Confidence 4677777765
No 97
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.85 E-value=7.4e-08 Score=82.02 Aligned_cols=109 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.|.|...... ..|.........+ +|..+.++||| |... .... +....
T Consensus 20 ~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~---G~~~-------~~~~----~~~~~ 79 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIG---GQRA-------IRPY----WRNYF 79 (173)
T ss_pred EccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECC---CCHH-------HHHH----HHHHh
Confidence 69999999999999999753211 1233333345566 89999999999 8532 1122 22334
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++++|+++... . .-......+..++... .-..++++.|+.|....
T Consensus 80 ~~~~~ii~v~D~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 80 ENTDCLIYVIDSADK-K-RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred cCCCEEEEEEeCCCH-H-HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 678999999988621 1 1111222333322221 23578888999987654
No 98
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.85 E-value=1.3e-07 Score=82.93 Aligned_cols=140 Identities=11% Similarity=-0.017 Sum_probs=78.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |.........+..-......+ +|. .+.|+||| |-. .. .....
T Consensus 5 vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~-------~~----~~~~~ 68 (191)
T cd04112 5 LLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTA---GQE-------RF----RSVTH 68 (191)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCC---CcH-------HH----HHhhH
Confidence 37999999999999999876 432211111111111222344 553 77889999 831 11 11112
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-++ ...+..+...... ..++||+.|+.|..... . + .+...+.+....+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~--~----~---~~~~~~~l~~~~~ 137 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER--V----V---KREDGERLAKEYG 137 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc--c----c---CHHHHHHHHHHcC
Confidence 23467899999999874322221 2233344443322 34788999999965431 1 1 1234566667666
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
..|+-.+.++
T Consensus 138 ~~~~e~Sa~~ 147 (191)
T cd04112 138 VPFMETSAKT 147 (191)
T ss_pred CeEEEEeCCC
Confidence 6676665544
No 99
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.85 E-value=5.5e-08 Score=81.00 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=64.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
++|++||||||++|.+++.. |..... +.+..-......+ +|.. +.++||| |.... . .+. .
T Consensus 6 iiG~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~----~----~l~---~ 67 (162)
T cd04138 6 VVGAGGVGKSALTIQLIQNH-FVDEYD--PTIEDSYRKQVVI-DGETCLLDILDTA---GQEEY----S----AMR---D 67 (162)
T ss_pred EECCCCCCHHHHHHHHHhCC-CcCCcC--CcchheEEEEEEE-CCEEEEEEEEECC---CCcch----H----HHH---H
Confidence 47999999999999999876 433222 1111111223345 6654 6789999 85321 1 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++++|+.+.++-+-++. ..+..+.... ...-..++||.|+.|...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 123468999999988633222221 1222333322 122457899999999754
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.85 E-value=2.2e-08 Score=83.26 Aligned_cols=111 Identities=13% Similarity=0.033 Sum_probs=68.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |..... +.+.........+ ++ ..+.++||| |..+. ... ...
T Consensus 5 ~G~~~~GKTsli~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~-------~~~----~~~ 66 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGT-FVEEYD--PTIEDSYRKTIVV-DGETYTLDILDTA---GQEEF-------SAM----RDL 66 (160)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCcCcC--CChhHeEEEEEEE-CCEEEEEEEEECC---ChHHH-------HHH----HHH
Confidence 6999999999999999887 654432 2233333344455 54 468899999 85431 111 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++++|+++.+.-+-.+ ......+....+. ...+++|+.|+.|...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 2346799999998863222121 2233334433332 3568899999999775
No 101
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.85 E-value=1.3e-07 Score=82.40 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |...................+ +|.. +.++||| |..... .+. ..
T Consensus 6 vG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~~~--------~~~---~~ 69 (193)
T cd04118 6 LGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTA---GSERYE--------AMS---RI 69 (193)
T ss_pred ECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECC---Cchhhh--------hhh---Hh
Confidence 6999999999999999865 432111111111122233455 6654 4589999 864321 111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++..+-+-+. ...+..+... ..-..++||.|+.|..+.
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEccccccc
Confidence 3457899999999873322111 1223333332 123579999999996543
No 102
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.84 E-value=1.5e-07 Score=79.15 Aligned_cols=137 Identities=13% Similarity=-0.008 Sum_probs=75.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
++|++||||||++|++++.+.-... ..|... ......+ ++ ..+.|+||| |-.. ....
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~~-~~~~~~~~i~D~~---G~~~-----------~~~~ 66 (163)
T cd01860 6 LLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVNL-DDTTVKFEIWDTA---GQER-----------YRSL 66 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEEE-CCEEEEEEEEeCC---chHH-----------HHHH
Confidence 5799999999999999998732211 112221 1223344 54 467899999 8421 1111
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCH-HHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSE-EEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL 156 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~-ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~ 156 (307)
......+.|++|||+++.+.-+- .....+..+....+ .-..+||+.|+.|.......+ ...+..+...
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~ 135 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVS---------TEEAQEYADE 135 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCC---------HHHHHHHHHH
Confidence 12234578999999998621111 11222333333321 234578888998865331011 1234556666
Q ss_pred cCCeEEEEcCCC
Q 044972 157 CDNRRVLFDNKT 168 (307)
Q Consensus 157 Cg~R~~~fnNk~ 168 (307)
.+-.|+-.+.++
T Consensus 136 ~~~~~~~~Sa~~ 147 (163)
T cd01860 136 NGLLFFETSAKT 147 (163)
T ss_pred cCCEEEEEECCC
Confidence 666666666554
No 103
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.84 E-value=7.5e-08 Score=83.68 Aligned_cols=108 Identities=8% Similarity=-0.078 Sum_probs=69.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+.|... .. . ..|.........+ +|..+.++||| |..+ .. .......
T Consensus 25 lG~~~~GKStLi~~l~~~~~-~~-~---~~T~~~~~~~i~~-~~~~~~l~D~~---G~~~-------~~----~~~~~~~ 84 (190)
T cd00879 25 LGLDNAGKTTLLHMLKDDRL-AQ-H---VPTLHPTSEELTI-GNIKFKTFDLG---GHEQ-------AR----RLWKDYF 84 (190)
T ss_pred ECCCCCCHHHHHHHHhcCCC-cc-c---CCccCcceEEEEE-CCEEEEEEECC---CCHH-------HH----HHHHHHh
Confidence 69999999999999998763 21 1 1233333455667 89999999999 8432 11 1112234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
++.|++++|+++.++-+- ......+..+++.. .-..++|++|+.|...
T Consensus 85 ~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 85 PEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred ccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 688999999998622111 12334555555432 3368999999999653
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.84 E-value=2.2e-08 Score=84.12 Aligned_cols=112 Identities=18% Similarity=0.075 Sum_probs=65.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|++++.. |.+...+ +.+..+ .....+ +|. .+.++||| |..+.. .+ ..
T Consensus 7 i~G~~~~GKtsl~~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~----~~-------~~ 68 (164)
T cd04145 7 VVGGGGVGKSALTIQFIQSY-FVTDYDP-TIEDSY-TKQCEI-DGQWAILDILDTA---GQEEFS----AM-------RE 68 (164)
T ss_pred EECCCCCcHHHHHHHHHhCC-CCcccCC-CccceE-EEEEEE-CCEEEEEEEEECC---CCcchh----HH-------HH
Confidence 47999999999999999875 4332221 111122 223456 665 57889999 864321 11 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++++|+++.++-+-+. ...+..+...... .-.++||+.|+.|...
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEH 121 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccc
Confidence 22357899999999873322222 1122233332221 2347899999988654
No 105
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.84 E-value=4e-08 Score=84.49 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=73.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
++|++||||||++|.|.|...+. ..| ....+ ++. .+|||| |++... ....+++. ..
T Consensus 6 ~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtp---G~~~~~---~~~~~~~~----~~ 61 (158)
T PRK15467 6 FVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTP---GEYFSH---PRWYHALI----TT 61 (158)
T ss_pred EECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCC---ccccCC---HHHHHHHH----HH
Confidence 58999999999999999875321 112 12234 443 379999 987543 22233332 23
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC--
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN-- 159 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~-- 159 (307)
..++|++|+|+++....+... .++..+ +. -..++++.|+.|.... .. ..+.+++.+-+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~----~~~~~~-~~--~~~ii~v~nK~Dl~~~---~~---------~~~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLP----AGLLDI-GV--SKRQIAVISKTDMPDA---DV---------AATRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccC----HHHHhc-cC--CCCeEEEEEccccCcc---cH---------HHHHHHHHHcCCCC
Confidence 578999999999863322211 122222 21 3468899999995322 11 124455555443
Q ss_pred eEEEEcCCCC
Q 044972 160 RRVLFDNKTK 169 (307)
Q Consensus 160 R~~~fnNk~~ 169 (307)
.|+..+.++.
T Consensus 123 p~~~~Sa~~g 132 (158)
T PRK15467 123 PIFELNSHDP 132 (158)
T ss_pred CEEEEECCCc
Confidence 5776766653
No 106
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.84 E-value=1.6e-08 Score=86.69 Aligned_cols=111 Identities=17% Similarity=0.081 Sum_probs=65.3
Q ss_pred CCCCCCcHHHHHHHHHCCCcc------ccccCC-------CCCCceeEEEEEEE----eCCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAF------KSKVGS-------SEDTKTCEMQRTML----KDGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F------~s~~s~-------~svT~~c~~~~~~~----~~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+||||||+.|.+++.... ...... .++|.........+ ..+..+.++||| |..+..
T Consensus 6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~- 81 (179)
T cd01890 6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTP---GHVDFS- 81 (179)
T ss_pred EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECC---CChhhH-
Confidence 699999999999999985421 111000 01222221111222 034578899999 986521
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..+.+ +..+.|++|||+++....+.++...+..+.. .-..+|||+|+.|...
T Consensus 82 ------~~~~~----~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 82 ------YEVSR----SLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPS 133 (179)
T ss_pred ------HHHHH----HHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCc
Confidence 12222 2347899999999875566555444433321 1246899999999643
No 107
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.7e-08 Score=104.18 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=92.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS--ADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~--~~~~~i~~eI~kcv~l 80 (307)
+|.|||||||+.|.+.|.+.-... -.+||-+-..+.... .|..+.+||.| |.++-. ..++.+.++. +
T Consensus 9 vGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLP---G~YSL~~~S~DE~Var~~-----l 77 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLP---GTYSLTAYSEDEKVARDF-----L 77 (653)
T ss_pred ecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCC---CcCCCCCCCchHHHHHHH-----H
Confidence 799999999999999999876554 347787666777777 89999999999 888643 2344454443 2
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
....||+++-|+++. .+-..=.-+++.+. .-.++|++++..|..+..|..+ ....|-+.-|-.
T Consensus 78 l~~~~D~ivnVvDAt-nLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~I----------D~~~L~~~LGvP 140 (653)
T COG0370 78 LEGKPDLIVNVVDAT-NLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRI----------DIEKLSKLLGVP 140 (653)
T ss_pred hcCCCCEEEEEcccc-hHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcc----------cHHHHHHHhCCC
Confidence 357899999999886 44332223333332 3556999999999876533222 234555555666
Q ss_pred EEEEcC
Q 044972 161 RVLFDN 166 (307)
Q Consensus 161 ~~~fnN 166 (307)
++.-.-
T Consensus 141 Vv~tvA 146 (653)
T COG0370 141 VVPTVA 146 (653)
T ss_pred EEEEEe
Confidence 665443
No 108
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.83 E-value=5.6e-08 Score=81.62 Aligned_cols=109 Identities=7% Similarity=-0.039 Sum_probs=66.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.+.... . .|.........++.+..+.++||| |... +........
T Consensus 5 ~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~---G~~~-----------~~~~~~~~~ 65 (160)
T cd04156 5 LGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVG---GQEK-----------MRTVWKCYL 65 (160)
T ss_pred EcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECC---CCHh-----------HHHHHHHHh
Confidence 69999999999999999875432 1 122222223334235689999999 8632 111112234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
.+.|+++||+++.+..+- ......+..++-.. .-..++||+|+.|...
T Consensus 66 ~~~~~iv~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 66 ENTDGLVYVVDSSDEARL--DESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred ccCCEEEEEEECCcHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 578999999998633221 12223344443322 2357999999999643
No 109
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=9.4e-08 Score=81.06 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=65.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.. |..... ...+.........+ +| ..+.++||| |.. .... ...
T Consensus 8 vvG~~~~GKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~-------~~~~----~~~ 70 (165)
T cd01864 8 LIGDSNVGKTCVVQRFKSGT-FSERQG-NTIGVDFTMKTLEI-EGKRVKLQIWDTA---GQE-------RFRT----ITQ 70 (165)
T ss_pred EECCCCCCHHHHHHHHhhCC-CcccCC-CccceEEEEEEEEE-CCEEEEEEEEECC---ChH-------HHHH----HHH
Confidence 37999999999999998765 332211 11222333344556 66 378999999 831 1111 112
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
......|++|||+++.++-+-+. ...+..+..... .--..|||.|+.|....
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 23457899999999873322121 223333333211 22458899999986543
No 110
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.83 E-value=5.3e-08 Score=86.87 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=70.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.+ |.... ....+..+......+ +|+ .+.++||| |+.+.... ...+......
T Consensus 5 ivG~~~vGKTsLi~~~~~~~-f~~~~-~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~---G~~~~~~~---~~~e~~~~~~ 75 (198)
T cd04142 5 VLGAPGVGKTAIVRQFLAQE-FPEEY-IPTEHRRLYRPAVVL-SGRVYDLHILDVP---NMQRYPGT---AGQEWMDPRF 75 (198)
T ss_pred EECCCCCcHHHHHHHHHcCC-CCccc-CCccccccceeEEEE-CCEEEEEEEEeCC---CcccCCcc---chhHHHHHHH
Confidence 47999999999999999875 53221 111122333334456 784 67799999 87542111 1111111122
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhc-cccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFG-KKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG-~~~~~~~IVLfT~~D~L~ 132 (307)
.+..+.|++|||+++.++-+-+. ...++.+...+- ...-..+|||.|+.|...
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 33478999999999874322222 222333444331 122357899999998754
No 111
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.82 E-value=6.5e-08 Score=81.76 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=65.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |.... ..+++.........+ +|. .+.|+||| |... . ..+ ..
T Consensus 8 vvG~~~~GKSsli~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~-------~-~~~---~~ 70 (165)
T cd01868 8 LIGDSGVGKSNLLSRFTRNE-FNLDS-KSTIGVEFATRSIQI-DGKTIKAQIWDTA---GQER-------Y-RAI---TS 70 (165)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCC-CCccceEEEEEEEEE-CCEEEEEEEEeCC---ChHH-------H-HHH---HH
Confidence 47999999999999999886 43221 122332333334455 664 67899999 8521 1 111 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV-FDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~ 132 (307)
....+.+++|||+++.++-+-++ +..++..+..... -..++||.|+.|...
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 23357899999999863332222 2223333222111 257889999999654
No 112
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.82 E-value=1e-07 Score=98.37 Aligned_cols=112 Identities=22% Similarity=0.224 Sum_probs=77.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
-+|.+|+||||++|.+.|... |... ...+.|..+......+ ++..+.+|||| |. +.. .+.+.
T Consensus 5 iiG~~d~GKTTLi~aLtg~~~d~~~eE-~~rGiTid~~~~~~~~-~~~~v~~iDtP---Gh-------e~f----~~~~~ 68 (581)
T TIGR00475 5 TAGHVDHGKTTLLKALTGIAADRLPEE-KKRGMTIDLGFAYFPL-PDYRLGFIDVP---GH-------EKF----ISNAI 68 (581)
T ss_pred EECCCCCCHHHHHHHHhCccCcCChhH-hcCCceEEeEEEEEEe-CCEEEEEEECC---CH-------HHH----HHHHH
Confidence 379999999999999999652 3211 1234566665556667 78999999999 84 222 22233
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....++|++|||+++...+..+....+..+. .+| ..+.||++|+.|..+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLD-LLG---IPHTIVVITKADRVNE 118 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCCCCCH
Confidence 4456899999999997555556555555443 333 4579999999998754
No 113
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.81 E-value=3.2e-07 Score=77.58 Aligned_cols=141 Identities=13% Similarity=-0.012 Sum_probs=77.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
++|++||||||++|++++.. |..... .+++.........+ +|. .+.|+||| |..+. . .+..
T Consensus 5 viG~~~~GKSsl~~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~~----~----~~~~--- 67 (172)
T cd01862 5 ILGDSGVGKTSLMNQYVNKK-FSNQYK-ATIGADFLTKEVTV-DDKLVTLQIWDTA---GQERF----Q----SLGV--- 67 (172)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCcCcC-CccceEEEEEEEEE-CCEEEEEEEEeCC---ChHHH----H----hHHH---
Confidence 68999999999999999876 322221 12222233333456 664 45689999 85321 1 1111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL 156 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~ 156 (307)
....+.+++|+|+++..+-+-+.. .....+....... .-..++||.|+.|...+...+. ..+..+.+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~ 138 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST---------KKAQQWCQS 138 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH---------HHHHHHHHH
Confidence 123578999999988633221211 1122222222221 1357889999999874311111 234455555
Q ss_pred cC-CeEEEEcCCC
Q 044972 157 CD-NRRVLFDNKT 168 (307)
Q Consensus 157 Cg-~R~~~fnNk~ 168 (307)
.+ -.++..+.++
T Consensus 139 ~~~~~~~~~Sa~~ 151 (172)
T cd01862 139 NGNIPYFETSAKE 151 (172)
T ss_pred cCCceEEEEECCC
Confidence 55 4566556554
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.81 E-value=2.5e-08 Score=84.34 Aligned_cols=111 Identities=16% Similarity=-0.001 Sum_probs=66.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+... ... +...........+ +| ..+.++||| |..+... + ..
T Consensus 5 i~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~~D~~---g~~~~~~--------~---~~ 66 (171)
T cd00157 5 VVGDGAVGKTCLLISYTTGKFPT-EYV--PTVFDNYSATVTV-DGKQVNLGLWDTA---GQEEYDR--------L---RP 66 (171)
T ss_pred EECCCCCCHHHHHHHHHhCCCCC-CCC--CceeeeeEEEEEE-CCEEEEEEEEeCC---Ccccccc--------c---ch
Confidence 47999999999999999986422 111 1111122223334 44 468999999 8654211 0 11
Q ss_pred hcCCCCeEEEEEEeCCCCCC--HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFS--EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT--~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+..|++++|+++.++-+ ......+..+....+ -..++||+|+.|....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD 119 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence 23367899999999873222 222222333333222 5789999999997765
No 115
>PLN03126 Elongation factor Tu; Provisional
Probab=98.80 E-value=2.8e-08 Score=100.44 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc--------------ccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS--------------KVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s--------------~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.|.||+...... .....+.|..+......+ +++.+++|||| |..
T Consensus 87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtP---Gh~------- 155 (478)
T PLN03126 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCP---GHA------- 155 (478)
T ss_pred ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECC---CHH-------
Confidence 69999999999999996321110 011234455554445567 88999999999 853
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
+....+.. ...++|+.|||+++..-...+.+..+..+..+ | ..+.||++|+.|.... ..+.+.+. .
T Consensus 156 ~f~~~~~~----g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-g---i~~iIvvvNK~Dl~~~--~~~~~~i~----~ 221 (478)
T PLN03126 156 DYVKNMIT----GAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVDD--EELLELVE----L 221 (478)
T ss_pred HHHHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEecccccCH--HHHHHHHH----H
Confidence 23333333 33578999999998655666666666554432 2 4678999999998753 33334343 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.++.++..+|
T Consensus 222 ~i~~~l~~~g 231 (478)
T PLN03126 222 EVRELLSSYE 231 (478)
T ss_pred HHHHHHHhcC
Confidence 5788888764
No 116
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.80 E-value=1.4e-07 Score=82.53 Aligned_cols=107 Identities=7% Similarity=-0.021 Sum_probs=67.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.++|.. |... ..|.........+ ++..+.++||| |.... . .......
T Consensus 23 vG~~~~GKTsli~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~~~D~~---G~~~~----~-------~~~~~~~ 82 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDR-LAQH----QPTQHPTSEELAI-GNIKFTTFDLG---GHQQA----R-------RLWKDYF 82 (184)
T ss_pred ECCCCCCHHHHHHHHhcCC-Cccc----CCccccceEEEEE-CCEEEEEEECC---CCHHH----H-------HHHHHHh
Confidence 6999999999999999975 3211 1133333445566 88899999999 86421 1 1112345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L 131 (307)
++.|++|+|+++. .... -..+...+..++... .-..++||.|+.|..
T Consensus 83 ~~ad~ii~vvD~~-~~~~-~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 PEVNGIVYLVDAY-DKER-FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CCCCEEEEEEECC-cHHH-HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 7899999999986 2211 112223344444332 235799999999964
No 117
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.80 E-value=7.5e-08 Score=82.07 Aligned_cols=144 Identities=17% Similarity=0.054 Sum_probs=80.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|++++.. |.....+ +...... ....+ +|. .+.++||| |...... + ...
T Consensus 4 ~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~ 65 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYS-ADVEV-DGKPVELGLWDTA---GQEDYDR--------L---RPL 65 (174)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeee-EEEEE-CCEEEEEEEEECC---CCcccch--------h---chh
Confidence 6999999999999999875 5432221 1111221 22345 665 57899999 8543210 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCC----CCchHHHHH
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPE----CPKPLKEIL 154 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~----~~~~Lk~Li 154 (307)
...+.|+||||+++.++-|-+. ...+..+...+ ...++|||.|+.|..... .+++++.... .......+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 4568999999999874322222 12233343332 246899999999976531 2333332110 112344566
Q ss_pred HhcCC-eEEEEcCCC
Q 044972 155 QLCDN-RRVLFDNKT 168 (307)
Q Consensus 155 ~~Cg~-R~~~fnNk~ 168 (307)
+..+. .|+-.+-++
T Consensus 142 ~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 142 KRIGAVKYLECSALT 156 (174)
T ss_pred HHcCCcEEEEecCCC
Confidence 66554 565554433
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.80 E-value=1.2e-07 Score=81.79 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=68.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.. |.. . ..|..+......+ ++..+.++||| |... .........
T Consensus 21 ~G~~~~GKTsl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~l~D~~---G~~~-----------~~~~~~~~~ 80 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGE-VVH-T---SPTIGSNVEEIVY-KNIRFLMWDIG---GQES-----------LRSSWNTYY 80 (174)
T ss_pred ECCCCCCHHHHHHHHccCC-CCC-c---CCccccceEEEEE-CCeEEEEEECC---CCHH-----------HHHHHHHHh
Confidence 5999999999999998765 331 1 2233344455667 88899999999 8632 111122334
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
.++|++|||+++..+-+ -......+..++... .-..++|+.|+.|...
T Consensus 81 ~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 81 TNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred hcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 68999999999863211 112223344444332 2357899999999643
No 119
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.80 E-value=3.5e-08 Score=102.63 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=82.8
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc------------C-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV------------G-------------------SSEDTKTCEMQRTMLKDGQVVNV 51 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~------------s-------------------~~svT~~c~~~~~~~~~Gr~v~V 51 (307)
+|.+|+|||||.|.||+.....+.. . ..+.|.........+ +++++++
T Consensus 30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~-~~~~~~l 108 (632)
T PRK05506 30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT-PKRKFIV 108 (632)
T ss_pred ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-CCceEEE
Confidence 6999999999999999765332210 0 023444455556677 8899999
Q ss_pred EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|||| |.. +....+. .+..++|++|||+++...++.+.+..+..+.. +| .++.||++|+.|..
T Consensus 109 iDtP---G~~-------~f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~---~~~iivvvNK~D~~ 170 (632)
T PRK05506 109 ADTP---GHE-------QYTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASL-LG---IRHVVLAVNKMDLV 170 (632)
T ss_pred EECC---ChH-------HHHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hC---CCeEEEEEEecccc
Confidence 9999 942 2222222 23458999999999865565555544444333 33 36889999999987
Q ss_pred CCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 132 EDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+.+...++... ..+..+++..+.
T Consensus 171 ~~~~~~~~~i~-----~~i~~~~~~~~~ 193 (632)
T PRK05506 171 DYDQEVFDEIV-----ADYRAFAAKLGL 193 (632)
T ss_pred cchhHHHHHHH-----HHHHHHHHHcCC
Confidence 53212222222 235566666543
No 120
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.79 E-value=4.8e-08 Score=96.05 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=83.7
Q ss_pred CCCCCCcHHHHHHHHHCC------Ccccc----cc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGR------RAFKS----KV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~------~~F~s----~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+++|||||.+.|+|. ..+.. .. -..+.|..+....... +++++++|||| |..+
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtp---Gh~~------ 87 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCP---GHAD------ 87 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECC---chHH------
Confidence 699999999999999843 22210 00 0135565554444455 78899999999 8632
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
....+ ..+..++|++|||+++...+..+.+..+..+... -..++||++|++|.+.. ..+.+.+. .
T Consensus 88 -f~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~--~~~~~~~~----~ 152 (394)
T TIGR00485 88 -YVKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV----GVPYIVVFLNKCDMVDD--EELLELVE----M 152 (394)
T ss_pred -HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEEecccCCH--HHHHHHHH----H
Confidence 22222 2334578999999998755777777666665543 24677789999997753 22222232 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.++.+++..+
T Consensus 153 ~i~~~l~~~~ 162 (394)
T TIGR00485 153 EVRELLSEYD 162 (394)
T ss_pred HHHHHHHhcC
Confidence 4667777655
No 121
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.78 E-value=2.7e-07 Score=78.18 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=76.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |.... ..+.+.........+ +|. .+.|+||| |... . ..+. .
T Consensus 7 i~G~~~vGKSsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~D~~---G~~~-------~-~~~~---~ 69 (166)
T cd01869 7 LIGDSGVGKSCLLLRFADDT-YTESY-ISTIGVDFKIRTIEL-DGKTIKLQIWDTA---GQER-------F-RTIT---S 69 (166)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---CcHh-------H-HHHH---H
Confidence 47999999999999999875 43221 112222233334445 554 67899999 8421 1 1111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-.+ ...+..+..... --...|||.|+.|.... ..+ .....+.+.+..+
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~--~~~-------~~~~~~~~~~~~~ 138 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDK--RVV-------DYSEAQEFADELG 138 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccc--cCC-------CHHHHHHHHHHcC
Confidence 22357899999999863211111 112222222211 12468899999985443 111 1123455556666
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+..+-++
T Consensus 139 ~~~~~~Sa~~ 148 (166)
T cd01869 139 IPFLETSAKN 148 (166)
T ss_pred CeEEEEECCC
Confidence 6676666554
No 122
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.77 E-value=3e-08 Score=82.10 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=61.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|++||||||++|.++|... .. ..|. ...+ .+ .+|||| |.+.. .... .+.+...
T Consensus 5 liG~~~vGKSsL~~~l~~~~~-~~-----~~t~-----~~~~-~~---~~iDt~---G~~~~---~~~~----~~~~~~~ 59 (142)
T TIGR02528 5 FIGSVGCGKTTLTQALQGEEI-LY-----KKTQ-----AVEY-ND---GAIDTP---GEYVE---NRRL----YSALIVT 59 (142)
T ss_pred EECCCCCCHHHHHHHHcCCcc-cc-----ccce-----eEEE-cC---eeecCc---hhhhh---hHHH----HHHHHHH
Confidence 479999999999999998863 11 1121 2234 43 689999 97421 1111 2222234
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..+.|++|+|+++.++.+..+.. +...++ ..+|||+|+.|..+
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~----~~~~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPG----FASIFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChh----HHHhcc----CCeEEEEEeeccCC
Confidence 67999999999987555433322 222333 37889999999654
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.77 E-value=1.5e-07 Score=79.46 Aligned_cols=109 Identities=11% Similarity=-0.040 Sum_probs=67.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+.+... ... ..|..+......+ .+..+.++||| |..+. ..+ ...+.
T Consensus 5 vG~~~~GKTsl~~~l~~~~~-~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~--------~~~---~~~~~ 64 (158)
T cd04151 5 LGLDNAGKTTILYRLQLGEV-VTT----IPTIGFNVETVTY-KNLKFQVWDLG---GQTSI--------RPY---WRCYY 64 (158)
T ss_pred ECCCCCCHHHHHHHHccCCC-cCc----CCccCcCeEEEEE-CCEEEEEEECC---CCHHH--------HHH---HHHHh
Confidence 69999999999999977653 221 1232333344556 77899999999 87431 111 12234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+++++|+|+++.++-+-. .+...+..++... .-.+++||.|+.|....
T Consensus 65 ~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred cCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 6899999999986321111 1223333333221 24689999999986543
No 124
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.1e-08 Score=98.18 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=84.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD-SSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D-t~~~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||+.|.++..++..+.+ -.+.|++......++ +|.+|.++||. |+.. +....+.+.=+..+ -.
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTA---GiRe~~~~~iE~~gI~rA~---k~ 345 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTA---GIREESNDGIEALGIERAR---KR 345 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEecc---ccccccCChhHHHhHHHHH---HH
Confidence 6999999999999999999887653 346788888888888 99999999999 9886 33333443333332 23
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----hcc--c-cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESL----FGK--K-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~----FG~--~-~~~~~IVLfT~~D~L~~ 133 (307)
....|+++||+++....|.++....+.+... ++. + -...+|++.+..|-...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 3468999999998545666665554444431 111 0 12456677666665443
No 125
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.76 E-value=1.7e-07 Score=80.29 Aligned_cols=115 Identities=19% Similarity=0.074 Sum_probs=67.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.. |..... ..++.........+ +| ..+.++||| |..+ ....+ ..
T Consensus 7 vvG~~~vGKTsli~~~~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-------~~~~~---~~ 70 (170)
T cd04115 7 VIGDSNVGKTCLTYRFCAGR-FPERTE-ATIGVDFRERTVEI-DGERIKVQLWDTA---GQER-------FRKSM---VQ 70 (170)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCccc-cceeEEEEEEEEEE-CCeEEEEEEEeCC---ChHH-------HHHhh---HH
Confidence 47999999999999999865 432211 11222223334456 66 578899999 8521 11112 22
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....++|++++|+++.++-+-+... .+..+... ....-..+|||.|+.|....
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQH-SLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHh-cCCCCCCEEEEEECccchhh
Confidence 3356899999999987333322221 12222221 11223578999999996543
No 126
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.75 E-value=1.5e-07 Score=78.94 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=65.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..... .+. .
T Consensus 6 i~G~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~ 67 (163)
T cd04136 6 VLGSGGVGKSALTVQFVQGI-FVEKYD--PTIEDSYRKQIEV-DGQQCMLEILDTA---GTEQFT--------AMR---D 67 (163)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCcccC--CchhhhEEEEEEE-CCEEEEEEEEECC---Cccccc--------hHH---H
Confidence 47999999999999999765 433222 2122222233445 664 56679999 863211 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|||+++.++-+-++ ...+..+....+. .-...|||.|+.|...
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 23467899999999874322222 2223334433222 2347889999999654
No 127
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.75 E-value=5.4e-08 Score=82.79 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
+|.+||||||++|.+++.. |..... .|.. .......+ ++. .+.++||| |... .....
T Consensus 6 vG~~~vGKTsli~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-----------~~~~~ 66 (161)
T cd04124 6 LGDSAVGKSKLVERFLMDG-YEPQQL---STYALTLYKHNAKF-EGKTILVDFWDTA---GQER-----------FQTMH 66 (161)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCcC---CceeeEEEEEEEEE-CCEEEEEEEEeCC---Cchh-----------hhhhh
Confidence 6999999999999999765 532221 1222 22223344 554 67799999 8532 11112
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
.....+.|++|||+++..+.+-++ ...+..+.... ....+|||.|+.|.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl 116 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDL 116 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccC
Confidence 233467899999999874444333 22334444322 23588999999985
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.74 E-value=1.7e-07 Score=80.41 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=68.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.+.+.. |.. ...|.........+ ++..+.|+||| |..... ......
T Consensus 4 lvG~~~~GKTsl~~~l~~~~-~~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~---G~~~~~-----------~~~~~~ 63 (169)
T cd04158 4 TLGLDGAGKTTILFKLKQDE-FMQ----PIPTIGFNVETVEY-KNLKFTIWDVG---GKHKLR-----------PLWKHY 63 (169)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCC----cCCcCceeEEEEEE-CCEEEEEEECC---CChhcc-----------hHHHHH
Confidence 37999999999999999873 532 12344444445566 78899999999 864321 011122
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
..+.|+++||+++.++-+- ..+..++..++-... -..++||.|+.|..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 3578999999998632111 123344555543321 24788999998854
No 129
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.74 E-value=1.6e-07 Score=88.00 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=69.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.+|+|||||.|.||.........+. .+.|-........| .|..+++|||| |..|
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTP---G~~d 83 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTP---GHED 83 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECC---CchH
Confidence 699999999999999964332221110 01121233446678 99999999999 9754
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
. ..+...++ .+.|++|+|+++...+.......++.... .-...+|+.++.|...
T Consensus 84 f-------~~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~ 137 (267)
T cd04169 84 F-------SEDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREG 137 (267)
T ss_pred H-------HHHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCC
Confidence 2 12222222 46899999999875565554444433322 2346888999998543
No 130
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.73 E-value=2.7e-07 Score=77.46 Aligned_cols=139 Identities=16% Similarity=0.024 Sum_probs=75.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.+++.. |..... .+++.........++ .+..+.++||| |..+ . ..+.
T Consensus 5 ~vG~~~~GKTsl~~~~~~~~-~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~D~~---G~~~-------~-~~~~--- 68 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVKGI-FTKDYK-KTIGVDFLEKQIFLRQSDEDVRLMLWDTA---GQEE-------F-DAIT--- 68 (162)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCCC-CcEEEEEEEEEEEEcCCCCEEEEEEeeCC---chHH-------H-HHhH---
Confidence 37999999999999999865 432221 122222222233331 23578999999 8421 1 1111
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
.....+.|++|+|+++.++-+-+ ....++..+ ... .-.++|||.|+.|.......+ ......+.+..
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~---------~~~~~~~~~~~ 136 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFE--AIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVIT---------NEEAEALAKRL 136 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCC---------HHHHHHHHHHc
Confidence 22346899999999886321111 122222222 111 134789999999976541111 12244556666
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+..+.++
T Consensus 137 ~~~~~~~Sa~~ 147 (162)
T cd04106 137 QLPLFRTSVKD 147 (162)
T ss_pred CCeEEEEECCC
Confidence 65666555544
No 131
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.73 E-value=8.9e-08 Score=94.69 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=76.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccc--------------c-----------------CCCCCCceeEEEEEEEeCCeEEE
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSK--------------V-----------------GSSEDTKTCEMQRTMLKDGQVVN 50 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~--------------~-----------------s~~svT~~c~~~~~~~~~Gr~v~ 50 (307)
.+|.+++|||||.+.||........ . ...+.|..+......+ ++++++
T Consensus 5 ~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~~~~~ 83 (406)
T TIGR02034 5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DKRKFI 83 (406)
T ss_pred EECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CCeEEE
Confidence 4799999999999999854322111 0 0124556666666778 899999
Q ss_pred EEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 51 VIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 51 VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
+|||| |.. +....+. .+..++|++|||+++...+..+.+..+..+. .+| .++.||++|+.|.
T Consensus 84 liDtP---Gh~-------~f~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~-~~~---~~~iivviNK~D~ 145 (406)
T TIGR02034 84 VADTP---GHE-------QYTRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIAS-LLG---IRHVVLAVNKMDL 145 (406)
T ss_pred EEeCC---CHH-------HHHHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHH-HcC---CCcEEEEEEeccc
Confidence 99999 842 2333333 2345899999999986556555555444333 334 4688999999998
Q ss_pred CCC
Q 044972 131 LED 133 (307)
Q Consensus 131 L~~ 133 (307)
...
T Consensus 146 ~~~ 148 (406)
T TIGR02034 146 VDY 148 (406)
T ss_pred ccc
Confidence 753
No 132
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.73 E-value=1.8e-07 Score=78.88 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=77.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|++++.. |..... +.+.........+ +|. .+.++||| |..+.. .+. . .
T Consensus 6 ~G~~~~GKTsli~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---g~~~~~----~~~---~----~ 67 (164)
T smart00173 6 LGSGGVGKSALTIQFVQGH-FVDDYD--PTIEDSYRKQIEI-DGEVCLLDILDTA---GQEEFS----AMR---D----Q 67 (164)
T ss_pred ECCCCCCHHHHHHHHHhCc-CCcccC--CchhhhEEEEEEE-CCEEEEEEEEECC---Ccccch----HHH---H----H
Confidence 6999999999999999876 543322 2122222233445 664 66789999 864421 111 1 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++++|+++.++-+-+.. .....+....+. .-.++|||.|+.|..... .+. ....+.+.+..+-
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~--~~~-------~~~~~~~~~~~~~ 137 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESER--VVS-------TEEGKELARQWGC 137 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccc--eEc-------HHHHHHHHHHcCC
Confidence 23467999999998733222221 112333333222 135788999999975431 110 1223455555565
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|.-.+.++
T Consensus 138 ~~~~~Sa~~ 146 (164)
T smart00173 138 PFLETSAKE 146 (164)
T ss_pred EEEEeecCC
Confidence 666555554
No 133
>PLN03118 Rab family protein; Provisional
Probab=98.73 E-value=1.5e-07 Score=84.02 Aligned_cols=113 Identities=9% Similarity=0.005 Sum_probs=64.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |. ..++ ..+.........+ +| ..+.|+||| |..... .+ . .
T Consensus 19 ivG~~~vGKTsli~~l~~~~-~~-~~~~-t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~----~~----~---~ 80 (211)
T PLN03118 19 LIGDSGVGKSSLLVSFISSS-VE-DLAP-TIGVDFKIKQLTV-GGKRLKLTIWDTA---GQERFR----TL----T---S 80 (211)
T ss_pred EECcCCCCHHHHHHHHHhCC-CC-CcCC-CceeEEEEEEEEE-CCEEEEEEEEECC---CchhhH----HH----H---H
Confidence 36999999999999999875 32 1111 1112222333445 55 478999999 863311 11 1 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|||+++.++-+-++.. ....+...+....-...|||.|+.|...
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 2235789999999987432222221 1112222333323346788899998654
No 134
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.72 E-value=5.7e-08 Score=91.69 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=57.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~ 65 (307)
++|.|||||||++|.|.|.++-.+. ...+|.....+...+++.+ +|.+|||| ||.....
T Consensus 3 ivG~PN~GKSTLfn~Lt~~~~~~~n--~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~p---Gl~~~a~ 77 (274)
T cd01900 3 IVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIA---GLVKGAS 77 (274)
T ss_pred EeCCCCCcHHHHHHHHhCCCCcccc--ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECC---CcCCCCc
Confidence 5899999999999999999873222 2345656666666773332 59999999 9986443
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSV 94 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~ 94 (307)
..+.+...... ....+|++|+|+++
T Consensus 78 ~~~glg~~fL~----~i~~~D~li~VV~~ 102 (274)
T cd01900 78 KGEGLGNKFLS----HIREVDAIAHVVRC 102 (274)
T ss_pred hhhHHHHHHHH----HHHhCCEEEEEEeC
Confidence 33333333222 23468999999986
No 135
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.72 E-value=1.5e-07 Score=82.25 Aligned_cols=113 Identities=12% Similarity=0.000 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |....+. .+.........+. .+..+.++||| |... .. .+ ..
T Consensus 8 ~vG~~~~GKTsli~~~~~~~-~~~~~~t--~~~~~~~~~~~~~~~~~~~l~l~Dt~---G~~~-------~~-~~---~~ 70 (183)
T cd04152 8 MLGLDSAGKTTVLYRLKFNE-FVNTVPT--KGFNTEKIKVSLGNSKGITFHFWDVG---GQEK-------LR-PL---WK 70 (183)
T ss_pred EECCCCCCHHHHHHHHhcCC-cCCcCCc--cccceeEEEeeccCCCceEEEEEECC---CcHh-------HH-HH---HH
Confidence 47999999999999999865 4322211 1112222222221 45689999999 8521 11 11 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|+|+++.+.-+-++ ...+..+..... ..-..++||+|+.|...
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 23468999999999862211111 112222333222 23468999999999654
No 136
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.72 E-value=1.8e-07 Score=79.83 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=65.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |.....+ +.+.........+ +|. .+.++||| |..+. .. + ..
T Consensus 8 vvG~~~~GKSsl~~~~~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~l~l~D~~---g~~~~-------~~-~---~~ 70 (167)
T cd01867 8 LIGDSGVGKSCLLLRFSEDS-FNPSFIS-TIGIDFKIRTIEL-DGKKIKLQIWDTA---GQERF-------RT-I---TT 70 (167)
T ss_pred EECCCCCCHHHHHHHHhhCc-CCccccc-CccceEEEEEEEE-CCEEEEEEEEeCC---chHHH-------HH-H---HH
Confidence 37999999999999999876 5433221 1122223333445 554 67899999 84321 11 1 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|||+++.++-+-+ .+..++..+-.. ..-..++||.|+.|..+.
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 2235789999999986332211 222222222111 123478999999987643
No 137
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.72 E-value=1.1e-07 Score=95.92 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=73.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccc------------cC-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSK------------VG-------------------SSEDTKTCEMQRTMLKDGQVVNV 51 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~------------~s-------------------~~svT~~c~~~~~~~~~Gr~v~V 51 (307)
+|.+++|||||.+.||......+. .+ ..+.|-.+......+ ++.++++
T Consensus 33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-~~~~i~~ 111 (474)
T PRK05124 33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-EKRKFII 111 (474)
T ss_pred ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-CCcEEEE
Confidence 699999999999999966432211 00 123455555556677 8899999
Q ss_pred EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|||| |. +.....+.. +..++|++|||+++...++.+.+..+.. ...+| .+++||++|+.|..
T Consensus 112 iDTP---Gh-------~~f~~~~~~----~l~~aD~allVVDa~~G~~~qt~~~~~l-~~~lg---~~~iIvvvNKiD~~ 173 (474)
T PRK05124 112 ADTP---GH-------EQYTRNMAT----GASTCDLAILLIDARKGVLDQTRRHSFI-ATLLG---IKHLVVAVNKMDLV 173 (474)
T ss_pred EECC---Cc-------HHHHHHHHH----HHhhCCEEEEEEECCCCccccchHHHHH-HHHhC---CCceEEEEEeeccc
Confidence 9999 93 223333333 3468999999999864555544443332 33344 46889999999987
Q ss_pred C
Q 044972 132 E 132 (307)
Q Consensus 132 ~ 132 (307)
.
T Consensus 174 ~ 174 (474)
T PRK05124 174 D 174 (474)
T ss_pred c
Confidence 4
No 138
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.72 E-value=3.1e-07 Score=79.61 Aligned_cols=111 Identities=13% Similarity=0.033 Sum_probs=63.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |.....+ ++.... ......++|. .+.++||| |..+ . ..+ ...
T Consensus 6 vG~~~vGKTsli~~l~~~~-~~~~~~~-t~~~~~-~~~i~~~~~~~~~l~i~Dt~---G~~~-------~-~~~---~~~ 68 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGK-FPEEYVP-TVFENY-VTNIQGPNGKIIELALWDTA---GQEE-------Y-DRL---RPL 68 (187)
T ss_pred ECCCCCCHHHHHHHHHhCc-CCCCCCC-eeeeee-EEEEEecCCcEEEEEEEECC---Cchh-------H-HHH---HHH
Confidence 6999999999999999875 5432211 111111 1122331233 67899999 8421 0 111 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGA--AIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~--~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++.++-|-++.. .+..+.. +.+ -.+.|||.|+.|....
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~--~~piilv~nK~Dl~~~ 120 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNH-FCP--GTPIMLVGLKTDLRKD 120 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCC--CCCEEEEEeChhhhhC
Confidence 356899999999987433322221 1222222 222 3578999999996543
No 139
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.72 E-value=2.6e-07 Score=77.81 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred CCCCCCcHHHHHHHHHCC-CccccccCCCCCCcee--EEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTC--EMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c--~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
+|.+||||||++|.+++. ..|.... ..|..+ ......+. ....+.++||| |.. .. ..+
T Consensus 6 vG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~---G~~-------~~-~~~--- 68 (164)
T cd04101 6 VGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSA---GQE-------LY-SDM--- 68 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECC---CHH-------HH-HHH---
Confidence 699999999999999964 4564322 223322 22223331 23689999999 841 11 111
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
........|++|+|+++.++.+-++ +-.++..+........+|||.|+.|..+.
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFEN--CSRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 1223468899999999874322221 12222222211223678999999986543
No 140
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.72 E-value=1.2e-07 Score=82.57 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=66.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |.... ..+++.........+ +|. .+.++||| |..+. ......
T Consensus 6 ~G~~~vGKSsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---g~~~~-----------~~~~~~ 68 (188)
T cd04125 6 IGDYGVGKSSLLKRFTEDE-FSEST-KSTIGVDFKIKTVYI-ENKIIKLQIWDTN---GQERF-----------RSLNNS 68 (188)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCC-CCceeeEEEEEEEEE-CCEEEEEEEEECC---CcHHH-----------HhhHHH
Confidence 6999999999999999876 43211 112222233334455 664 56789999 84321 111123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|+||||+++.++-+-... ..+..+....+.. .+.||+.|+.|..+.
T Consensus 69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN 120 (188)
T ss_pred HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence 34689999999998733221211 1223333333322 578999999997643
No 141
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.72 E-value=7.7e-07 Score=76.38 Aligned_cols=138 Identities=9% Similarity=-0.038 Sum_probs=73.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------CCeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------DGQVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------~Gr~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
.+|++||||||++|.+++.. |.....+ +++-........+. ....+.++||| |-. .
T Consensus 9 ivG~~~vGKTsli~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~-------~- 75 (180)
T cd04127 9 ALGDSGVGKTSFLYQYTDNK-FNPKFIT-TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTA---GQE-------R- 75 (180)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCccCCC-ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCC---ChH-------H-
Confidence 47999999999999999875 4332211 11111111122220 12578899999 831 1
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
..........+.|+||||+++.++-+-.+ +..++..+-.. ..-.+++||.|+.|..+.. .+ ...
T Consensus 76 ---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~v-------~~~ 141 (180)
T cd04127 76 ---FRSLTTAFFRDAMGFLLIFDLTNEQSFLN--VRNWMSQLQTHAYCENPDIVLCGNKADLEDQR--QV-------SEE 141 (180)
T ss_pred ---HHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEeCccchhcC--cc-------CHH
Confidence 11222234468999999999863222121 22233222111 1124689999999965431 11 112
Q ss_pred hHHHHHHhcCCeEEEEcC
Q 044972 149 PLKEILQLCDNRRVLFDN 166 (307)
Q Consensus 149 ~Lk~Li~~Cg~R~~~fnN 166 (307)
..+.+.+..+-.|+-..-
T Consensus 142 ~~~~~~~~~~~~~~e~Sa 159 (180)
T cd04127 142 QAKALADKYGIPYFETSA 159 (180)
T ss_pred HHHHHHHHcCCeEEEEeC
Confidence 345666665544544333
No 142
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.71 E-value=4.1e-07 Score=77.32 Aligned_cols=136 Identities=12% Similarity=0.054 Sum_probs=76.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
+|++||||||++|.+++.+ |.... +.|..+. .....+ +|. .+.++||| |... . ..+ .
T Consensus 8 iG~~~vGKTsli~~~~~~~-~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~-------~-~~~---~ 68 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKK-FMADC---PHTIGVEFGTRIIEV-NGQKIKLQIWDTA---GQER-------F-RAV---T 68 (166)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCC---CcccceeEEEEEEEE-CCEEEEEEEEECC---CcHH-------H-HHH---H
Confidence 6999999999999999874 54332 2232222 223345 654 67899999 8421 1 111 1
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
.....+.|++|||+++.++-+-+ .+..++..+... .--..++||.|+.|.... ..+ .....+.+.+..
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~--~~~-------~~~~~~~~~~~~ 137 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQ--RDV-------TYEEAKQFADEN 137 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccc--cCc-------CHHHHHHHHHHc
Confidence 22346899999999987432222 222333332111 112578999999886543 111 112345555555
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+-.+-++
T Consensus 138 ~~~~~e~Sa~~ 148 (166)
T cd04122 138 GLLFLECSAKT 148 (166)
T ss_pred CCEEEEEECCC
Confidence 55555444433
No 143
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.71 E-value=2.1e-07 Score=91.32 Aligned_cols=110 Identities=16% Similarity=0.014 Sum_probs=65.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCC---CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSED---TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~sv---T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++|+||||++|+|-|-..=..+....++ |..... ...|.=..|++.|.| |...+..+.+...+++.
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlP---G~gt~~f~~~~Yl~~~~---- 111 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLP---GIGTPNFPPEEYLKEVK---- 111 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE-----GGGSS--HHHHHHHTT----
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCC---CCCCCCCCHHHHHHHcc----
Confidence 699999999999999774321112222222 233222 233344589999999 99877777776655542
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
....|.||+|.+ . ||+..+....+.++.+ -+...+|-|+.|.
T Consensus 112 --~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 --FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDS 153 (376)
T ss_dssp --GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred --ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence 234678777664 4 9999999999999884 6778999999874
No 144
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.71 E-value=3.2e-07 Score=78.72 Aligned_cols=108 Identities=18% Similarity=0.022 Sum_probs=64.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-C--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-D--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.++... |.... ..|..+......+. + +..+.++||| |..+.... ..
T Consensus 6 vG~~~vGKTsli~~~~~~~-~~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~---G~~~~~~~--------~~--- 67 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLDFHTNRGKIRFNVWDTA---GQEKFGGL--------RD--- 67 (166)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCC---CCceeeEEEEEEEEECCEEEEEEEEECC---CChhhccc--------cH---
Confidence 6999999999999999654 43222 22322322222111 3 3578899999 86432211 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....++|++|+|+++.++-+-+. ...+..+....+ -.++|||.|+.|..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 12358999999999873322222 123344444433 56789999999965
No 145
>PRK00007 elongation factor G; Reviewed
Probab=98.71 E-value=1.2e-07 Score=99.80 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=78.3
Q ss_pred CCCCCCcHHHHHHHHH---CCCccc--ccc-----------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSIL---GRRAFK--SKV-----------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~~~F~--s~~-----------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+|||||.|.|| |..... ... ...+.|.........| .|+++++|||| |..|
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTP---G~~~---- 87 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTP---GHVD---- 87 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCC---CcHH----
Confidence 6999999999999998 431110 000 1224555565667788 99999999999 9754
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...++.+.+ ...|++|||+++...++.++...+..+... ....||++|++|....
T Consensus 88 ---f~~ev~~al----~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 ---FTIEVERSL----RVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA 142 (693)
T ss_pred ---HHHHHHHHH----HHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 222444443 346899999998767888888888877653 3567899999998754
No 146
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.70 E-value=1.6e-07 Score=82.43 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=78.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|.. +.++||| |..... .+. .
T Consensus 4 ivG~~~vGKTsli~~l~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~ 65 (190)
T cd04144 4 VLGDGGVGKTALTIQLCLNH-FVETYD--PTIEDSYRKQVVV-DGQPCMLEVLDTA---GQEEYT--------ALR---D 65 (190)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCccCC--CchHhhEEEEEEE-CCEEEEEEEEECC---CchhhH--------HHH---H
Confidence 37999999999999999654 543221 1111111223345 7764 7789999 853211 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|+||||+++.++-|-+. ...+..+...... .....+|||.|+.|..... .+ . ....+.+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~--~v----~---~~~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER--EV----S---TEEGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC--cc----C---HHHHHHHHHHh
Confidence 23457899999999874333222 2234444444332 1235788899999965431 11 1 11234555556
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+..|+-.+.++
T Consensus 137 ~~~~~e~SAk~ 147 (190)
T cd04144 137 GCEFIEASAKT 147 (190)
T ss_pred CCEEEEecCCC
Confidence 65565444433
No 147
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.70 E-value=1.3e-07 Score=85.70 Aligned_cols=113 Identities=16% Similarity=0.025 Sum_probs=65.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++...+.....+... .........+ +| ..+.++||| |..+ .+ . .
T Consensus 5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~-~~~~~~l~i~Dt~---G~~~------~~----~---~ 66 (221)
T cd04148 5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSV-DGEESTLVVIDHW---EQEM------WT----E---D 66 (221)
T ss_pred EECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEE-CCEEEEEEEEeCC---Ccch------HH----H---h
Confidence 3799999999999999876533122211111 1222233344 44 578999999 8751 11 1 1
Q ss_pred hcCC-CCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKD-GIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~p-Gpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+.. ++|++|||+++.++-+-+. ...+..+... .......+|||.|+.|....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence 1233 8999999999874322221 2223333332 22234678999999996543
No 148
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.69 E-value=1.6e-07 Score=78.49 Aligned_cols=111 Identities=15% Similarity=0.047 Sum_probs=63.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.. |..... +.+..-......+ +| ..+.++||| |..+.. ... .
T Consensus 5 ~~G~~~~GKTsl~~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~-------~~~----~ 66 (164)
T cd04139 5 VVGAGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEDVQLNILDTA---GQEDYA-------AIR----D 66 (164)
T ss_pred EECCCCCCHHHHHHHHHhCC-CccccC--CcchhhEEEEEEE-CCEEEEEEEEECC---Chhhhh-------HHH----H
Confidence 47999999999999999765 433222 2122212222344 54 468899999 854321 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++++|+.+...-+ -.....++..+... ..-..++||+|+.|...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMES--FTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 23346789999998752111 11112222222221 23467999999999765
No 149
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.69 E-value=2.9e-07 Score=84.12 Aligned_cols=74 Identities=14% Similarity=-0.009 Sum_probs=54.1
Q ss_pred EEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeE
Q 044972 42 MLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYM 121 (307)
Q Consensus 42 ~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~ 121 (307)
.. .|+.+++|||| |.. ...+....++ ....+|++++|+++...++..+...+.++... -...
T Consensus 80 ~~-~~~~i~liDtp---G~~-------~~~~~~~~~~--~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-----~ip~ 141 (224)
T cd04165 80 EK-SSKLVTFIDLA---GHE-------RYLKTTLFGL--TGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-----NIPV 141 (224)
T ss_pred ee-CCcEEEEEECC---CcH-------HHHHHHHHhh--cccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCE
Confidence 44 78999999999 853 2333443332 12358999999998767899998888887653 2457
Q ss_pred EEEEecCCCCCC
Q 044972 122 IVVFTRGDELED 133 (307)
Q Consensus 122 IVLfT~~D~L~~ 133 (307)
||++|++|.+..
T Consensus 142 ivvvNK~D~~~~ 153 (224)
T cd04165 142 FVVVTKIDLAPA 153 (224)
T ss_pred EEEEECccccCH
Confidence 999999998754
No 150
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.67 E-value=8.7e-08 Score=81.28 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||+++.+++.. |..... +.+.........+ +|. .+.++||| |...... .. ...
T Consensus 5 vG~~~~GKtsli~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~~--~~----~~~---- 67 (165)
T cd04146 5 LGASGVGKSALVVRFLTKR-FIGEYD--PNLESLYSRQVTI-DGEQVSLEILDTA---GQQQADT--EQ----LER---- 67 (165)
T ss_pred ECCCCCcHHHHHHHHHhCc-cccccC--CChHHhceEEEEE-CCEEEEEEEEECC---CCccccc--ch----HHH----
Confidence 6999999999999999754 532221 1111122233456 776 46799999 8763110 01 111
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...++|++|+|+++.++-+-+. ...+..+...-....-.++|||.|+.|.... .. +. ......+.+..+.
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~----v~---~~~~~~~~~~~~~ 138 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQ----VS---TEEGEKLASELGC 138 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--Cc----cC---HHHHHHHHHHcCC
Confidence 1246899999999874322222 1123333332110224578999999985332 11 11 1233455555665
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+-.+.+
T Consensus 139 ~~~e~Sa~ 146 (165)
T cd04146 139 LFFEVSAA 146 (165)
T ss_pred EEEEeCCC
Confidence 55444443
No 151
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.66 E-value=3e-07 Score=83.12 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc-----------------------------ccCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS-----------------------------KVGSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s-----------------------------~~s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+|||||...||...-..+ .....+.|.........+ .|..+++||
T Consensus 5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i~liD 83 (219)
T cd01883 5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRFTILD 83 (219)
T ss_pred ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEEEEEE
Confidence 69999999999999974311100 000124555555666778 999999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-----C--CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-----F--SEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-----f--T~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |..+ ....+. .+...+|++|||+++... | ..+....+... ..+| .+++||++|
T Consensus 84 tp---G~~~-------~~~~~~----~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivvN 145 (219)
T cd01883 84 AP---GHRD-------FVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAVN 145 (219)
T ss_pred CC---ChHH-------HHHHHH----HHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEEE
Confidence 99 9632 112222 233568999999998632 1 22233333222 2222 368899999
Q ss_pred cCCCCCC--CcccHHHhcCCCCCchHHHHHHhcC
Q 044972 127 RGDELED--NDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 127 ~~D~L~~--~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
+.|.... +...+++.+. .++.++...+
T Consensus 146 K~Dl~~~~~~~~~~~~i~~-----~l~~~l~~~~ 174 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKK-----ELSPFLKKVG 174 (219)
T ss_pred ccccccccccHHHHHHHHH-----HHHHHHHHcC
Confidence 9998732 1122333332 3556666644
No 152
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=2.6e-07 Score=78.82 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=64.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE-eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML-KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~-~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.+||||||+.|++++.. |....+. .+... .....+ ..+..+.++||| |..... .. .. ..
T Consensus 6 vG~~~vGKTsl~~~l~~~~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~i~Dt~---G~~~~~---~~----~~----~~ 67 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEE-FPENVPR--VLPEI-TIPADVTPERVPTTIVDTS---SRPQDR---AN----LA----AE 67 (166)
T ss_pred ECCCCCCHHHHHHHHHhCc-CCccCCC--cccce-EeeeeecCCeEEEEEEeCC---Cchhhh---HH----Hh----hh
Confidence 6999999999999999865 5432211 11111 111122 033578899999 875421 11 11 12
Q ss_pred CCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|+++||+++.++-+-+. ...+..+... +. ..+++||.|+.|..+.
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRDG 118 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEEchhcccc
Confidence 367899999999863332222 1223333332 22 4689999999997654
No 153
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.66 E-value=3e-07 Score=81.25 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |...... .+..-......+ +| ..+.++||| |..+.. .+. ..
T Consensus 5 vG~~~vGKTsll~~~~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~~~--------~~~---~~ 66 (198)
T cd04147 5 MGAAGVGKTALIQRFLYDT-FEPKYRR--TVEEMHRKEYEV-GGVSLTLDILDTS---GSYSFP--------AMR---KL 66 (198)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCccCCC--chhhheeEEEEE-CCEEEEEEEEECC---Cchhhh--------HHH---HH
Confidence 6999999999999999875 4332221 111122234456 66 478899999 865421 111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++...-+-++. ..+..+..... ..-..+|||.|+.|...
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 34688999999998632222221 12233333332 23467899999999765
No 154
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.66 E-value=3.9e-07 Score=77.56 Aligned_cols=112 Identities=12% Similarity=-0.029 Sum_probs=63.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.+ |.....+ +++.......... +| ..+.++||| |..+. ......
T Consensus 7 ~G~~~~GKSsli~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~l~Dt~---g~~~~-----------~~~~~~ 69 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDS-FTSAFVS-TVGIDFKVKTVFR-NDKRVKLQIWDTA---GQERY-----------RTITTA 69 (165)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCCC-ceeeEEEEEEEEE-CCEEEEEEEEECC---ChHHH-----------HHHHHH
Confidence 6999999999999999876 5322111 1111122222233 44 468899999 85321 111123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|+|+++.++-+ -..+..++..+.-.. ...+++||.|+.|..+.
T Consensus 70 ~~~~~~~~l~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 70 YYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred HccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 3578999999999863311 112223333322111 13468999999886543
No 155
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.66 E-value=5.7e-07 Score=79.64 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.. |..... .+++.........+ +| ..+.|+||| |-... ..+ ..
T Consensus 11 vvG~~~vGKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~l~D~~---G~~~~--------~~~---~~ 73 (199)
T cd04110 11 IIGDSGVGKSSLLLRFADNT-FSGSYI-TTIGVDFKIRTVEI-NGERVKLQIWDTA---GQERF--------RTI---TS 73 (199)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCcC-ccccceeEEEEEEE-CCEEEEEEEEeCC---CchhH--------HHH---HH
Confidence 47999999999999999876 432111 11111222223344 55 467899999 84211 111 12
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|+||||+++.++-+-+ .+..++..+....-....+||.|+.|..+.
T Consensus 74 ~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 74 TYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred HHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 2345789999999986332212 222333332222223467888999986543
No 156
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.66 E-value=4e-07 Score=78.50 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+.+.. |... ..|.......... ++..+.++||| |... . ..+ .....
T Consensus 15 ~G~~~~GKTsli~~l~~~~-~~~~----~~t~g~~~~~~~~-~~~~~~l~Dt~---G~~~-------~-~~~---~~~~~ 74 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQ-SVTT----IPTVGFNVETVTY-KNVKFNVWDVG---GQDK-------I-RPL---WRHYY 74 (168)
T ss_pred ECcCCCCHHHHHHHHccCC-Cccc----cCCcccceEEEEE-CCEEEEEEECC---CCHH-------H-HHH---HHHHh
Confidence 7999999999999998654 4321 1232333334456 77899999999 8632 1 111 12345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L 131 (307)
.+.|++|||+++.++-+- ..+..++..++... .-..++||+|+.|..
T Consensus 75 ~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 689999999998743221 22334455554332 125799999999964
No 157
>PRK09866 hypothetical protein; Provisional
Probab=98.65 E-value=4.7e-05 Score=79.33 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
.++++|||| |++.+.. ..+.+.+.+. ..+.|+||||+++...++..|...++.+.+. |+ -.++++|++
T Consensus 230 ~QIIFVDTP---GIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVN 297 (741)
T PRK09866 230 GQLTLLDTP---GPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVN 297 (741)
T ss_pred CCEEEEECC---CCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEE
Confidence 588999999 9986542 2244444443 4568999999999755899998888888763 22 137999999
Q ss_pred cCCCCC
Q 044972 127 RGDELE 132 (307)
Q Consensus 127 ~~D~L~ 132 (307)
+.|...
T Consensus 298 KIDl~d 303 (741)
T PRK09866 298 KFDQQD 303 (741)
T ss_pred cccCCC
Confidence 999864
No 158
>PRK12739 elongation factor G; Reviewed
Probab=98.65 E-value=1.3e-07 Score=99.38 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=78.8
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc----------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV----------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~----------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+|||||.|.||....-.... ...+.|......+..| +|+++++|||| |+.|
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~~---- 85 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTP---GHVD---- 85 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCC---CHHH----
Confidence 6999999999999998532110000 1234566666677889 99999999999 9754
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...++.+++ ...|++|||+++...++.++...+..+... ....||++|++|....
T Consensus 86 ---f~~e~~~al----~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 ---FTIEVERSL----RVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred ---HHHHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 222444433 356899999998767888888777776542 3567899999998754
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.65 E-value=4.1e-07 Score=78.02 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=67.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.+++.. |..... .|.........+ .+..+.++||| |-.... .+ ....
T Consensus 4 ivG~~~vGKTsli~~~~~~~-~~~~~~---pt~g~~~~~i~~-~~~~l~i~Dt~---G~~~~~--------~~---~~~~ 64 (164)
T cd04162 4 VLGLDGAGKTSLLHSLSSER-SLESVV---PTTGFNSVAIPT-QDAIMELLEIG---GSQNLR--------KY---WKRY 64 (164)
T ss_pred EECCCCCCHHHHHHHHhcCC-Cccccc---ccCCcceEEEee-CCeEEEEEECC---CCcchh--------HH---HHHH
Confidence 37999999999999999875 433221 122222223345 67889999999 853311 11 1123
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|||+++.++.+-. .+..++..+.....-..++||.|+.|....
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HhhCCEEEEEEECCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 46789999999986333211 222334444332234678999999996443
No 160
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=6e-08 Score=91.57 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=46.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
+|.|||||||++|+|+|.++..++. ..++|+.++. .. -+..+.+|||| |+..+...+++..
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtP---Gi~~~~~~~~~~~ 187 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IK--LGKGLELLDTP---GILWPKLEDQEVG 187 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EE--eCCcEEEEECC---CcCCCCCCcHHHH
Confidence 6999999999999999998876643 3467777653 22 35579999999 9998876555443
No 161
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.63 E-value=8.7e-07 Score=74.89 Aligned_cols=139 Identities=10% Similarity=0.032 Sum_probs=75.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|+++.. .|..... +.+..-......+ +|. .+.++||| |..... . +. .
T Consensus 6 ~~G~~~~GKTsli~~~~~~-~~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~----~----~~---~ 67 (164)
T cd04175 6 VLGSGGVGKSALTVQFVQG-IFVEKYD--PTIEDSYRKQVEV-DGQQCMLEILDTA---GTEQFT----A----MR---D 67 (164)
T ss_pred EECCCCCCHHHHHHHHHhC-CCCcccC--CcchheEEEEEEE-CCEEEEEEEEECC---Ccccch----h----HH---H
Confidence 4799999999999999954 4543322 2121111223445 665 45689999 863211 1 11 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|+++||+++.++-+-++ ...+..+..... ..-..++|+.|+.|.... ..+ .......+.+..+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~-------~~~~~~~~~~~~~ 137 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVV-------GKEQGQNLARQWG 137 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEE-------cHHHHHHHHHHhC
Confidence 23457899999998863322222 222333333221 123468999999997543 111 0112345555556
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
..|+-.+-++
T Consensus 138 ~~~~~~Sa~~ 147 (164)
T cd04175 138 CAFLETSAKA 147 (164)
T ss_pred CEEEEeeCCC
Confidence 5565554443
No 162
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.63 E-value=3.9e-07 Score=79.77 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=67.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+.... |.. . ..|.........+ ++..+.++||| |... .........
T Consensus 23 vG~~~vGKTsli~~~~~~~-~~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~---G~~~-----------~~~~~~~~~ 82 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGE-VVT-T---IPTIGFNVETVEY-KNLKFTMWDVG---GQDK-----------LRPLWRHYY 82 (182)
T ss_pred EcCCCCCHHHHHHHHhcCC-ccc-c---CCccccceEEEEE-CCEEEEEEECC---CCHh-----------HHHHHHHHh
Confidence 6999999999999997543 432 1 1233343444556 78899999999 8631 111122345
Q ss_pred CCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
.+.|++|||+++.++ |+. +...+..++.... -.++|||.|+.|..
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~----~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGD----AREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHH----HHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 689999999998632 222 2334455554432 35788999999854
No 163
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.63 E-value=6.4e-07 Score=75.82 Aligned_cols=112 Identities=12% Similarity=-0.004 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |..... .+.+..+......+ +|. .+.++||| |..+ ... ....
T Consensus 13 ~G~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~-------~~~----~~~~ 75 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGL-FPPGQG-ATIGVDFMIKTVEI-KGEKIKLQIWDTA---GQER-------FRS----ITQS 75 (169)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCC-CceeeEEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHH----HHHH
Confidence 6999999999999999764 332211 12223344444556 774 47788999 8532 111 1122
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|+|+++...-+-+. ...+..+..+... --..+|+.|+.|....
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER 127 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 3467899999999863222111 1223333433322 2346888999996543
No 164
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.63 E-value=4.7e-07 Score=78.22 Aligned_cols=111 Identities=21% Similarity=0.100 Sum_probs=65.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ ............+ +| ..+.++||| |.... ..+ ...
T Consensus 6 vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~--------~~~---~~~ 68 (170)
T cd04108 6 VGDLSVGKTCLINRFCKDV-FDKNYKA-TIGVDFEMERFEI-LGVPFSLQLWDTA---GQERF--------KCI---AST 68 (170)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCCC-ceeeEEEEEEEEE-CCEEEEEEEEeCC---ChHHH--------Hhh---HHH
Confidence 6999999999999999874 6543321 1112233333445 55 478999999 85321 011 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF--DYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++.++-+-+ ....++..++....- ..++||.|+.|..+
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 356899999999986321111 122334333322211 35789999999543
No 165
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.62 E-value=1.3e-06 Score=78.35 Aligned_cols=139 Identities=16% Similarity=0.090 Sum_probs=78.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
.+|.+||||||++|.+++.. |.... ..|.... .....+++ ...+.|+||| |... ...+.
T Consensus 5 ivG~~~vGKSsLi~~l~~~~-~~~~~---~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~---G~~~--------~~~l~-- 67 (215)
T cd04109 5 VLGDGAVGKTSLCRRFAKEG-FGKSY---KQTIGLDFFSKRVTLPGNLNVTLQVWDIG---GQSI--------GGKML-- 67 (215)
T ss_pred EECcCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEeCCCCEEEEEEEECC---CcHH--------HHHHH--
Confidence 47999999999999999865 54322 2233222 23334422 2578899999 8421 11111
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc-CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHH
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV-FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQ 155 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~ 155 (307)
.....+.|+||||+++.++-+-+. ...+..+....+... ...+|||.|+.|..... .+ .......+.+
T Consensus 68 -~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--~v-------~~~~~~~~~~ 137 (215)
T cd04109 68 -DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TV-------KDDKHARFAQ 137 (215)
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc--cc-------CHHHHHHHHH
Confidence 122468999999999874322222 223444555554322 23578899999975431 11 1123455566
Q ss_pred hcCCeEEEEcCC
Q 044972 156 LCDNRRVLFDNK 167 (307)
Q Consensus 156 ~Cg~R~~~fnNk 167 (307)
..+-.|+...-+
T Consensus 138 ~~~~~~~~iSAk 149 (215)
T cd04109 138 ANGMESCLVSAK 149 (215)
T ss_pred HcCCEEEEEECC
Confidence 555445544433
No 166
>PTZ00258 GTP-binding protein; Provisional
Probab=98.62 E-value=1.4e-07 Score=93.10 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=57.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~ 65 (307)
++|.|||||||++|.|.|.++-.+.. ..+|.....+...+++.+ ++.+|||| ||.....
T Consensus 26 IVG~PNvGKSTLfnaLt~~~~~v~n~--pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp---GLv~ga~ 100 (390)
T PTZ00258 26 IVGLPNVGKSTTFNALCKQQVPAENF--PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA---GLVKGAS 100 (390)
T ss_pred EECCCCCChHHHHHHHhcCcccccCC--CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC---CcCcCCc
Confidence 58999999999999999987643322 345667777776664333 59999999 9985432
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
....+...+.. .....|++|+|++..
T Consensus 101 ~g~gLg~~fL~----~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLS----HIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHH----HHHHCCEEEEEEeCC
Confidence 22333333222 235689999999863
No 167
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.62 E-value=9.8e-08 Score=76.64 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=62.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||+++++++.............+.........+ .+ ..+.+.|+| |...........
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~~~~~~---------- 70 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFG---GQEEFYSQHQFF---------- 70 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEES---SSHCHHCTSHHH----------
T ss_pred ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecC---ccceecccccch----------
Confidence 69999999999999998874411111111112222223333 33 357889999 873221111111
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGD 129 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D 129 (307)
..+.|++|||+++.+.-|-+. ...+.++..+-+....-.+|||-||.|
T Consensus 71 -~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 -LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 235899999999873322233 233455555544334478999999976
No 168
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.62 E-value=2.5e-07 Score=97.17 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc---C-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV---G-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~---s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+|||||.|.||+........ . ..+.|..+......| ++.++++|||| |+.|..
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~~~~-- 89 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTP---GHVDFT-- 89 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECC---CCcchh--
Confidence 6999999999999998543221100 0 124555666777889 99999999999 987622
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.++.+. ....|++|||+++....+.++...+..+... -...||+.|+.|....
T Consensus 90 -----~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 -----VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred -----HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 122222 2456999999998766777777666665442 3567889999997653
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.61 E-value=6.1e-07 Score=80.34 Aligned_cols=112 Identities=10% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|++||||||++|.+.+.+ |....+ +. .......... .+..+.|+||| |... +...+...
T Consensus 5 l~G~~~sGKTsL~~~l~~~~-~~~t~~--s~--~~~~~~~~~~~~~~~~~~~l~D~p---G~~~-------~~~~~~~~- 68 (203)
T cd04105 5 LLGPSDSGKTALFTKLTTGK-YRSTVT--SI--EPNVATFILNSEGKGKKFRLVDVP---GHPK-------LRDKLLET- 68 (203)
T ss_pred EEcCCCCCHHHHHHHHhcCC-CCCccC--cE--eecceEEEeecCCCCceEEEEECC---CCHH-------HHHHHHHH-
Confidence 36999999999999999875 322111 11 1111111120 36789999999 8642 22222222
Q ss_pred HhcCCC-CeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc----cCCeEEEEEecCCCCCC
Q 044972 79 GMAKDG-IHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK----VFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pG-pha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~----~~~~~IVLfT~~D~L~~ 133 (307)
..+ ++++|||++.. .+...-..+..++..+|-.. .-..++|+.|+.|....
T Consensus 69 ---~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 69 ---LKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ---HhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 233 59999999987 44333444555555554321 24578999999997654
No 170
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.60 E-value=2.2e-07 Score=90.84 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=57.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~ 65 (307)
.+|.|||||||++|.|.|.++-.+.. ..+|.....+...+++.+ ++.+|||| ||.....
T Consensus 7 IVG~PNvGKSTLfnaLt~~~~~v~ny--pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~p---GL~~~a~ 81 (364)
T PRK09601 7 IVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIA---GLVKGAS 81 (364)
T ss_pred EECCCCCCHHHHHHHHhCCCCeeccc--ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECC---CCCCCCC
Confidence 47999999999999999988533222 345667777777774432 59999999 9986433
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSV 94 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~ 94 (307)
..+.+..... ......|++|+|+++
T Consensus 82 ~g~glg~~fL----~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLGNQFL----ANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHHHHHHH----HHHHhCCEEEEEEeC
Confidence 2233333322 223468999999986
No 171
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.59 E-value=3.5e-07 Score=83.37 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++|+||||+.|.|++...........+ | + ..... .++++++|||| |.. ..+... .
T Consensus 45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i--~i~~~-~~~~i~~vDtP---g~~----------~~~l~~----a 101 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I--TVVTG-KKRRLTFIECP---NDI----------NAMIDI----A 101 (225)
T ss_pred ECCCCCCHHHHHHHHHhhcccCccccccc-c--E--EEEec-CCceEEEEeCC---chH----------HHHHHH----H
Confidence 69999999999999998633211111111 1 1 11223 78899999999 742 122222 2
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...|++|||++....++..+...+..+... | ...+|+|+|++|.+..
T Consensus 102 k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g---~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQVH-G---FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C---CCeEEEEEeccccCCc
Confidence 457999999998756777777776666542 2 2345669999998854
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.59 E-value=3.8e-07 Score=78.39 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=64.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.|||||||++|++++.. |..... +.+..-......+ ++ ..+.++||| |..+.. ....
T Consensus 6 l~G~~g~GKTtl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~~-----------~~~~ 67 (180)
T cd04137 6 VLGSRSVGKSSLTVQFVEGH-FVESYY--PTIENTFSKIIRY-KGQDYHLEIVDTA---GQDEYS-----------ILPQ 67 (180)
T ss_pred EECCCCCCHHHHHHHHHhCC-CccccC--cchhhhEEEEEEE-CCEEEEEEEEECC---ChHhhH-----------HHHH
Confidence 47999999999999999875 432111 1111111223334 44 457899999 864211 1111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++++|+++.++-+-+. ...+..+...++. ....+||+.|+.|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 23457899999998873222222 1222333333332 2346899999999754
No 173
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.57 E-value=6.2e-07 Score=76.27 Aligned_cols=113 Identities=12% Similarity=-0.029 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
++|++||||||++|.+++.. |..... .+++.........+ +|. .+.++||| |-.. . .....
T Consensus 10 vvG~~~~GKTsli~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~-------~----~~~~~ 72 (170)
T cd04116 10 LLGDGGVGKSSLMNRYVTNK-FDTQLF-HTIGVEFLNKDLEV-DGHFVTLQIWDTA---GQER-------F----RSLRT 72 (170)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCcCcC-CceeeEEEEEEEEE-CCeEEEEEEEeCC---ChHH-------H----HHhHH
Confidence 57999999999999999865 443221 12222222334455 665 45678999 8321 1 11112
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKK--VFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~--~~~~~IVLfT~~D~L 131 (307)
....+.|++|+|++++++-+-+.. ..+..+....... .--.++||.|+.|..
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 234678999999988743222221 1222233332211 123678899998864
No 174
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.57 E-value=5.2e-07 Score=76.08 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=65.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.|||||||++|.+++.. |..... +.+.........+ +|. .+.|+||| |..... .+. .
T Consensus 6 i~G~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~----~~~-------~ 67 (163)
T cd04176 6 VLGSGGVGKSALTVQFVSGT-FIEKYD--PTIEDFYRKEIEV-DSSPSVLEILDTA---GTEQFA----SMR-------D 67 (163)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCCC--CchhheEEEEEEE-CCEEEEEEEEECC---Cccccc----chH-------H
Confidence 37999999999999999865 432221 2112233344555 665 46689999 953221 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|+|+++.++-|-++ ...+..+....+. .-..++||.|+.|...
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~ 120 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLES 120 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence 12357899999999873322122 2233334443321 2357899999999643
No 175
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.56 E-value=4.8e-07 Score=77.21 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=64.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ .+...+ .....+ ++ ..+.++||| |..+-.. + ...
T Consensus 7 iG~~~~GKTsli~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~ 68 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNV-FIESYDP-TIEDSY-RKQVEI-DGRQCDLEILDTA---GTEQFTA--------M---REL 68 (168)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCcccCC-cchheE-EEEEEE-CCEEEEEEEEeCC---Ccccchh--------h---hHH
Confidence 6999999999999999775 5432221 111122 223345 55 367889999 8643211 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.+++|||+++.++-+-+. ......+...++. .-...||+.|+.|...
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~ 120 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED 120 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence 2356889999998873222222 2233444444432 2346788899998654
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.56 E-value=6.1e-07 Score=95.51 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=75.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+|+|||||+|.|.+.++.... ..+.|.........| +|..|+|+||| |..+-. .... ...
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~-~~~~ItfiDTP---Ghe~F~-------~m~~----rga 358 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVET-NGGKITFLDTP---GHEAFT-------AMRA----RGA 358 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEE-CCEEEEEEECC---CCccch-------hHHH----hhh
Confidence 599999999999999987654322 234565555566778 89999999999 865421 1111 234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...|++|||++++.....+....+..+.. .-..+||++|+.|...
T Consensus 359 ~~aDiaILVVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 359 QVTDIVVLVVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPG 403 (787)
T ss_pred hhCCEEEEEEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECccccc
Confidence 57899999999875566666666554432 2346999999999754
No 177
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.56 E-value=6.1e-07 Score=76.43 Aligned_cols=109 Identities=17% Similarity=0.021 Sum_probs=64.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|++||||||++|.+++.+ |..... .|. ..-.....+ ++.. +.++||| |-.+-.. +.
T Consensus 5 i~G~~~~GKTsl~~~~~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~~--- 65 (174)
T cd04135 5 VVGDGAVGKTCLLMSYANDA-FPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTA---GQEDYDR--------LR--- 65 (174)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCC---CceeeeeEEEEEE-CCEEEEEEEEeCC---Ccccccc--------cc---
Confidence 36999999999999999876 432221 121 111223345 6654 6789999 8643211 11
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.....+.|++|||+++.++-+-++ ...+..+... ....+.+||.|+.|...
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhc
Confidence 123567899999998863322121 1223333322 23457899999999654
No 178
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.55 E-value=1.3e-06 Score=75.70 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=66.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.+ |..... +.+.........+ +|. .+.++||| |..... .+ ...
T Consensus 8 vG~~~vGKTsL~~~~~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~l---~~~ 69 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHS-FPDYHD--PTIEDAYKQQARI-DNEPALLDILDTA---GQAEFT--------AM---RDQ 69 (172)
T ss_pred ECCCCCcHHHHHHHHHhCC-CCCCcC--CcccceEEEEEEE-CCEEEEEEEEeCC---CchhhH--------HH---hHH
Confidence 6999999999999999865 532211 1111122233456 774 57889999 864211 11 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++.++-|-+.... ...+.... ...-.++|||.|+.|...
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence 3457899999999875555444321 22333321 112357899999998543
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.55 E-value=5.3e-07 Score=89.45 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=80.3
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc--------------c---------------cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS--------------K---------------VGSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s--------------~---------------~s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+++|||||.+.||......+ + ....+.|.........+ ++..++++|
T Consensus 13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~~~i~iiD 91 (426)
T TIGR00483 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DKYEVTIVD 91 (426)
T ss_pred EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CCeEEEEEE
Confidence 69999999999999985321100 0 01125666666666777 889999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC---CCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR---FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R---fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
|| |.. ..... +.....+.|++|||+++... ...+....+. +...+| ..++||++|+.|.
T Consensus 92 tp---Gh~-------~f~~~----~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviNK~Dl 153 (426)
T TIGR00483 92 CP---GHR-------DFIKN----MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAINKMDS 153 (426)
T ss_pred CC---CHH-------HHHHH----HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEEChhc
Confidence 99 842 22222 22334679999999998744 2222222222 233444 3589999999997
Q ss_pred CCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 131 LEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 131 L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...+...++.. ...++.+++..|
T Consensus 154 ~~~~~~~~~~~-----~~ei~~~~~~~g 176 (426)
T TIGR00483 154 VNYDEEEFEAI-----KKEVSNLIKKVG 176 (426)
T ss_pred cCccHHHHHHH-----HHHHHHHHHHcC
Confidence 64211222221 234677777765
No 180
>COG2262 HflX GTPases [General function prediction only]
Probab=98.53 E-value=9.3e-07 Score=86.98 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=77.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
-||=||+||||++|.|.|..+..-..-. .|-........+++|+.+.+-||- ||-+ +++..- ..-...-+ ..
T Consensus 197 LvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTV---GFI~-~LP~~L-V~AFksTL-EE 268 (411)
T COG2262 197 LVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTV---GFIR-DLPHPL-VEAFKSTL-EE 268 (411)
T ss_pred EEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCc---cCcc-cCChHH-HHHHHHHH-HH
Confidence 4789999999999999998876432211 122222334456578999999999 9976 244332 22222111 22
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.-.+|++|+|+++..+.-.+...++..+..-.|-.- .++|+||++.|.+.+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~ 319 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLED 319 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCc
Confidence 346899999999874433333334433333333322 799999999998866
No 181
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.53 E-value=3.7e-06 Score=75.56 Aligned_cols=140 Identities=13% Similarity=0.029 Sum_probs=74.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |... +..+++.........+.+| ..+.|+||| |.... ..+. .
T Consensus 7 vvG~~~vGKTsLi~~l~~~~-~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~---G~~~~--------~~~~---~ 70 (211)
T cd04111 7 VIGDSTVGKSSLLKRFTEGR-FAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTA---GQERF--------RSIT---R 70 (211)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCC---cchhH--------HHHH---H
Confidence 36999999999999999876 4321 1112222232223333234 368899999 84211 1111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-++ ...+..+....+. .....|||.|+.|.... .. + .......+.+.++
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~----v---~~~~~~~~~~~~~ 140 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQ----V---TREEAEKLAKDLG 140 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cc----c---CHHHHHHHHHHhC
Confidence 23467899999999873322111 1122223333222 12346788899986543 11 1 1123455666666
Q ss_pred CeEEEEcCC
Q 044972 159 NRRVLFDNK 167 (307)
Q Consensus 159 ~R~~~fnNk 167 (307)
-.|+-.+-+
T Consensus 141 ~~~~e~Sak 149 (211)
T cd04111 141 MKYIETSAR 149 (211)
T ss_pred CEEEEEeCC
Confidence 555544433
No 182
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.53 E-value=2.6e-06 Score=75.31 Aligned_cols=138 Identities=11% Similarity=-0.044 Sum_probs=75.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeC-C--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKD-G--QVVNVIDTPAIARLFDSSADFEFVSKEIVK 76 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~-G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k 76 (307)
.+|.+||||||++|.+++.. |.... ..|.. .......+ + | ..+.++||| |.... ..+.
T Consensus 5 ivG~~~vGKTsli~~l~~~~-~~~~~---~~t~~~d~~~~~v~~-~~~~~~~l~l~Dt~---G~~~~--------~~~~- 67 (201)
T cd04107 5 VIGDLGVGKTSIIKRYVHGI-FSQHY---KATIGVDFALKVIEW-DPNTVVRLQLWDIA---GQERF--------GGMT- 67 (201)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCC---CCceeEEEEEEEEEE-CCCCEEEEEEEECC---Cchhh--------hhhH-
Confidence 47999999999999999865 43222 12222 22223344 4 4 367899999 85211 1111
Q ss_pred HHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhc--cccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHH
Q 044972 77 CIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFG--KKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEI 153 (307)
Q Consensus 77 cv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG--~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~L 153 (307)
.....+.|++|||+++.++-+-+.. .-+..+...+. ......+|||.|+.|..... . + ....++.+
T Consensus 68 --~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~--~----~---~~~~~~~~ 136 (201)
T cd04107 68 --RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL--A----K---DGEQMDQF 136 (201)
T ss_pred --HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc--c----c---CHHHHHHH
Confidence 2234689999999998633222221 11222332221 12334789999999975321 0 1 12345666
Q ss_pred HHhcC-CeEEEEcCC
Q 044972 154 LQLCD-NRRVLFDNK 167 (307)
Q Consensus 154 i~~Cg-~R~~~fnNk 167 (307)
.+..+ ..|+...-+
T Consensus 137 ~~~~~~~~~~e~Sak 151 (201)
T cd04107 137 CKENGFIGWFETSAK 151 (201)
T ss_pred HHHcCCceEEEEeCC
Confidence 66655 345544433
No 183
>PLN03110 Rab GTPase; Provisional
Probab=98.53 E-value=7.7e-07 Score=80.17 Aligned_cols=111 Identities=10% Similarity=-0.011 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+...... ..+..........+ +| ..+.|+||| |... ... + ..
T Consensus 17 ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~-~~~~~~l~l~Dt~---G~~~-------~~~-~---~~ 79 (216)
T PLN03110 17 LIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQV-EGKTVKAQIWDTA---GQER-------YRA-I---TS 79 (216)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHH-H---HH
Confidence 47999999999999999876332211 11111222333445 55 378889999 8421 111 1 22
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.|++|||+++..+-+-+. ...+..+....+ .-..+|||.|+.|..
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN 130 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence 33467899999999863222211 122333333322 234789999999853
No 184
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.52 E-value=1.5e-06 Score=75.29 Aligned_cols=107 Identities=10% Similarity=-0.036 Sum_probs=67.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||+++.+.... |... ..|..+......+ ++..+.++||| |.... ..+ .....
T Consensus 19 ~G~~~~GKTsL~~~~~~~~-~~~~----~~t~~~~~~~~~~-~~~~l~l~D~~---G~~~~--------~~~---~~~~~ 78 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGE-SVTT----IPTIGFNVETVTY-KNISFTVWDVG---GQDKI--------RPL---WRHYY 78 (175)
T ss_pred EcCCCCCHHHHHHHHhcCC-CCCc----CCccccceEEEEE-CCEEEEEEECC---CChhh--------HHH---HHHHh
Confidence 6999999999999996433 4321 1233343444556 78899999999 86321 111 12235
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
.+.|++|||+++.++-+- ..+...+..++.... -..++||.|+.|..
T Consensus 79 ~~ad~ii~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRI--DEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCCCEEEEEEECCCHHHH--HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 789999999998633221 223345555544322 24688999999854
No 185
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.52 E-value=6.8e-07 Score=80.17 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-----------------CCCCCCceeEEEEEEEe----CCeEEEEEeCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-----------------GSSEDTKTCEMQRTMLK----DGQVVNVIDTPAIARLF 61 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------s~~svT~~c~~~~~~~~----~Gr~v~VIDTP~~~Gl~ 61 (307)
+|++|+||||+.+.+++........ ...+.|-........+. .+..+++|||| |..
T Consensus 6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp---G~~ 82 (213)
T cd04167 6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP---GHV 82 (213)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC---CCc
Confidence 6999999999999999754322100 00111211112222221 23689999999 976
Q ss_pred CCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 62 DSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 62 Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
+-. ..... +....|++|+|+++....+......+..+.. .....+||+|+.|.+
T Consensus 83 ~f~-------~~~~~----~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 83 NFM-------DEVAA----ALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred chH-------HHHHH----HHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence 421 11222 2346899999999864555544443333321 126799999999976
No 186
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=1.2e-07 Score=80.88 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=36.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARL 60 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl 60 (307)
+|.|||||||++|+|+|...+.++.. .+.|+.-+. .. .+..+.+|||| ||
T Consensus 106 ~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~--~~--~~~~~~liDtP---G~ 155 (155)
T cd01849 106 IGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQE--VK--LDNKIKLLDTP---GI 155 (155)
T ss_pred EccCCCCHHHHHHHHHccccccccCC-CCcccceEE--EE--ecCCEEEEECC---CC
Confidence 69999999999999999887765432 234443332 22 34679999999 86
No 187
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.51 E-value=2.6e-06 Score=73.45 Aligned_cols=110 Identities=8% Similarity=-0.036 Sum_probs=65.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccc-cccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFK-SKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~-s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||++|.+++.. |. ....+ ++..........+ +| ..+.+.||+ |-..... +. .
T Consensus 10 vG~~~vGKTsli~~~~~~~-f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~---g~~~~~~--------~~---~ 72 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRS-FSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVG---EDEVAIL--------LN---D 72 (169)
T ss_pred ECCCCCcHHHHHHHHhCCC-CCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecC---Ccccccc--------cc---h
Confidence 6999999999999999876 64 32211 2222333344556 67 456778999 7533211 00 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|||+++.++ .....+..++.. +-......+|||.|+.|..+
T Consensus 73 ~~~~~~d~~llv~d~~~~--~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 73 AELAACDVACLVYDSSDP--KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred hhhhcCCEEEEEEeCCCH--HHHHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence 123689999999998633 112222333333 21222468999999999644
No 188
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.51 E-value=1.5e-06 Score=89.89 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=72.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+|+||||++|.|.+.+..... ..+.|.+.......++++..++++||| |..+.. .. .....
T Consensus 93 ~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTP---Ghe~F~-------~~----r~rga 156 (587)
T TIGR00487 93 MGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTP---GHEAFT-------SM----RARGA 156 (587)
T ss_pred ECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECC---CCcchh-------hH----HHhhh
Confidence 599999999999999987644322 234565555555566234499999999 864311 11 11345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...|+++||++++.....+....+..... .-..+||++|+.|...
T Consensus 157 ~~aDiaILVVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 157 KVTDIVVLVVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPE 201 (587)
T ss_pred ccCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECccccc
Confidence 67899999999874555555555544332 2346999999999753
No 189
>PTZ00369 Ras-like protein; Provisional
Probab=98.49 E-value=9e-07 Score=77.54 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |.....+ +..... .....+ +|. .+.++||| |..+... + ..
T Consensus 10 iiG~~~~GKTsLi~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~---G~~~~~~----l-------~~ 71 (189)
T PTZ00369 10 VVGGGGVGKSALTIQFIQNH-FIDEYDP-TIEDSY-RKQCVI-DEETCLLDILDTA---GQEEYSA----M-------RD 71 (189)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCcCcCC-chhhEE-EEEEEE-CCEEEEEEEEeCC---CCccchh----h-------HH
Confidence 47999999999999999865 4222211 111111 223345 554 46789999 9654221 1 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.+++|+|+++.++-|-++ ...+..+...... .--.+|||.|+.|..
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLD 123 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 23458899999999864333222 1222333332221 123678899999853
No 190
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.48 E-value=8.2e-07 Score=77.89 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=65.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |.....+ ++..... ....+ +| ..+.++||| |-.... .+ ...
T Consensus 6 vG~~~vGKTsli~~~~~~~-~~~~~~~-t~~~~~~-~~i~~-~~~~~~l~i~Dt~---G~~~~~--------~l---~~~ 67 (189)
T cd04134 6 LGDGACGKTSLLNVFTRGY-FPQVYEP-TVFENYV-HDIFV-DGLHIELSLWDTA---GQEEFD--------RL---RSL 67 (189)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCccCC-cceeeeE-EEEEE-CCEEEEEEEEECC---CChhcc--------cc---ccc
Confidence 6999999999999999865 4322111 1111221 22334 55 468899999 853211 11 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|+|+||++++++-+-+. ...+..+.... ....+|||.|+.|....
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA 119 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence 4578999999999874422222 12233343321 23578999999986543
No 191
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.48 E-value=1.9e-06 Score=73.40 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=64.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+.... |.+.. .|.......... .+..+.++||| |... . ..+ .....
T Consensus 6 ~G~~~~GKTsli~~l~~~~-~~~~~----pt~g~~~~~~~~-~~~~~~l~D~~---G~~~-------~-~~~---~~~~~ 65 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGE-IVTTI----PTIGFNVETVEY-KNISFTVWDVG---GQDK-------I-RPL---WRHYF 65 (159)
T ss_pred ECCCCCCHHHHHHHHhcCC-CcccC----CCCCcceEEEEE-CCEEEEEEECC---CCHh-------H-HHH---HHHHh
Confidence 6999999999999996543 43211 122222334455 77899999999 8632 0 111 11234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
.+.|++|||+++.++-+- ..+...+..+..... -..++|+.|+.|..
T Consensus 66 ~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 66 QNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred cCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 688999999998632111 112333444433221 25788899999854
No 192
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.4e-05 Score=74.19 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCCCCCCCcHHHHHHHHHCCCccccccCCC--------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC---cCH--
Q 044972 1 SCACEYIKICTTTGNSILGRRAFKSKVGSS--------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS---ADF-- 67 (307)
Q Consensus 1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~--------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~---~~~-- 67 (307)
.|+|+||-||||++++++..+ |.+.+++. +.|-..+..... -.++||||- ||.|-- .+-
T Consensus 46 lCvGETg~GKsTLmdtLFNt~-f~~~p~~H~~~~V~L~~~TyelqEsnvr----lKLtiv~tv---GfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 46 LCVGETGLGKSTLMDTLFNTK-FESEPSTHTLPNVKLQANTYELQESNVR----LKLTIVDTV---GFGDQINKEDSYKP 117 (406)
T ss_pred EEeccCCccHHHHHHHHhccc-cCCCCCccCCCCceeecchhhhhhcCee----EEEEEEeec---ccccccCcccccch
Confidence 399999999999999999876 66554432 112111111112 389999999 998631 110
Q ss_pred ----------HHHHHH--HHHHHHhc-CCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 68 ----------EFVSKE--IVKCIGMA-KDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 68 ----------~~i~~e--I~kcv~ls-~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.-+.+| |.+.+..+ ...+||.|+.+... -.+-.-|.-+++.+-+ .-++|-|+.++|....
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhhH
Confidence 112333 44444433 34799999988543 2344445444444432 3456667777776554
No 193
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.48 E-value=3.2e-07 Score=86.07 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=44.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF 69 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~ 69 (307)
.+|.|||||||++|+|+|.+...++. ..++|+.++. ..+ +..+.||||| |+..+...+.+
T Consensus 123 ~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtP---G~~~~~~~~~~ 182 (276)
T TIGR03596 123 IVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTP---GILWPKFEDQE 182 (276)
T ss_pred EECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECC---CcccCCCCchH
Confidence 47999999999999999998776643 3456766543 223 4478999999 99776654443
No 194
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.48 E-value=3.7e-06 Score=71.56 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||+++.+++.. |.... ...+...+......+ +|. .+.+.||| |..... .+ ...
T Consensus 6 vG~~~~GKTsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~--------~~---~~~ 68 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNE-FHSSH-ISTIGVDFKMKTIEV-DGIKVRIQIWDTA---GQERYQ--------TI---TKQ 68 (161)
T ss_pred ECcCCCCHHHHHHHHhcCC-CCCCC-CCceeeEEEEEEEEE-CCEEEEEEEEeCC---CcHhHH--------hh---HHH
Confidence 6999999999999999876 53221 112222333344455 663 57789999 853211 11 122
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~ 132 (307)
...++|++++|+++.++=+-++ +..++..+.... ....++||-|+.|..+
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 3458899999999874322222 223333322211 1246788888888644
No 195
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.47 E-value=1.8e-06 Score=74.06 Aligned_cols=111 Identities=16% Similarity=0.028 Sum_probs=67.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
..|++||||||+++++++.. |.....+. +.........+ +| ..+.++||| |...... + ..
T Consensus 5 i~G~~~~GKtsl~~~~~~~~-~~~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~ 66 (173)
T cd04130 5 LVGDGAVGKTSLIVSYTTNG-YPTEYVPT--AFDNFSVVVLV-DGKPVRLQLCDTA---GQDEFDK--------L---RP 66 (173)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCCCc--eeeeeeEEEEE-CCEEEEEEEEECC---CChhhcc--------c---cc
Confidence 36999999999999999864 65433221 11122223445 66 367789999 8632110 1 12
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+..+.|++|+|+++.++-+-+. ...+..+.... .-..++|+.|+.|....
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD 119 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC
Confidence 34568999999999874433222 22333444321 12578999999996543
No 196
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=2.7e-07 Score=77.62 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.|||||||++|+|+|........ ..+.|+. .....+ ++ .+.+|||| |+.-
T Consensus 89 ~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~--~~~~~~-~~-~~~i~Dtp---G~~~ 140 (141)
T cd01857 89 VGYPNVGKSSLINALVGKKKVSVSA-TPGKTKH--FQTIFL-TP-TITLCDCP---GLVF 140 (141)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCC-CCCcccc--eEEEEe-CC-CEEEEECC---CcCC
Confidence 5999999999999999988664332 2233433 233445 44 68999999 9863
No 197
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.46 E-value=1.7e-06 Score=91.65 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+|+||||++|.|++.....+.. .+.|.........|. .+..++++||| |.. .......+
T Consensus 250 vGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTP---Ghe-------~F~~mr~r--- 314 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTP---GHE-------AFSSMRSR--- 314 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECC---cHH-------HHHHHHHH---
Confidence 6999999999999999876443222 234443333333342 35899999999 852 22222222
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++......+....+..+.. .-.++||++|+.|...
T Consensus 315 -g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 315 -GANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKAN 361 (742)
T ss_pred -HHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCccc
Confidence 3357899999999875666666666655432 2357999999999764
No 198
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.46 E-value=4.8e-06 Score=72.94 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=66.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||+++.+.... |... ..|..+....... ++..+.++||| |-. .. ..+ ....
T Consensus 22 ivG~~~~GKTsl~~~l~~~~-~~~~----~pt~g~~~~~~~~-~~~~~~i~D~~---Gq~-------~~-~~~---~~~~ 81 (181)
T PLN00223 22 MVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNISFTVWDVG---GQD-------KI-RPL---WRHY 81 (181)
T ss_pred EECCCCCCHHHHHHHHccCC-Cccc----cCCcceeEEEEEE-CCEEEEEEECC---CCH-------HH-HHH---HHHH
Confidence 37999999999999998543 4321 2233343444556 78899999999 841 11 111 1223
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
..+.|+++||+++.++-+- ..+...+..++.... -...+||.++.|..
T Consensus 82 ~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 4789999999998632111 123344555543322 24688888998854
No 199
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=1.7e-06 Score=80.32 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=79.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccC---CCCCCceeEEEEEE--Ee-CC--eEEEEEeCCCCCCCCCCCcCH---HH-
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVG---SSEDTKTCEMQRTM--LK-DG--QVVNVIDTPAIARLFDSSADF---EF- 69 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s---~~svT~~c~~~~~~--~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~- 69 (307)
.||.+|.||||++||+....+..+..+ +.+++++.+.+..+ +. +| -+++||||| ||.|---.+ +-
T Consensus 51 VVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTP---GfGDqInN~ncWePI 127 (336)
T KOG1547|consen 51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTP---GFGDQINNDNCWEPI 127 (336)
T ss_pred EEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCC---CcccccCccchhHHH
Confidence 379999999999999998877664322 23445555444322 21 33 389999999 998741110 11
Q ss_pred -----------HHHHHHHH--HHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 70 -----------VSKEIVKC--IGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 70 -----------i~~eI~kc--v~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+.+|+.-. -....-.+|+.|+.++.. -.+..-|...++.+.+ .-++|-|+.++|.|.
T Consensus 128 ~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~------vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 128 EKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE------VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh------hheeeeeEeeccccc
Confidence 22222211 112233689999999865 3577778888888876 468899999999863
No 200
>PRK12740 elongation factor G; Reviewed
Probab=98.45 E-value=2.2e-06 Score=89.70 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|++|+|||||.|.||......+... ..+.|-........| +|..+++|||| |..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtP---G~~~---- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTP---GHVD---- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECC---CcHH----
Confidence 59999999999999976543322110 012333444456778 99999999999 8753
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+...++ ...|++|+|++.....+......+..+.. .-...||++|+.|....
T Consensus 73 ---~~~~~~~~l----~~aD~vllvvd~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 ---FTGEVERAL----RVLDGAVVVVCAVGGVEPQTETVWRQAEK-----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred ---HHHHHHHHH----HHhCeEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 122233322 35899999999875666666665555443 13468889999997643
No 201
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.44 E-value=1.8e-06 Score=79.01 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEe-C--------CeEEEEEeCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLK-D--------GQVVNVIDTPAIAR 59 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~-~--------Gr~v~VIDTP~~~G 59 (307)
+|..++|||||.++|+......+.... .+.|-.....+..+. . +..+++|||| |
T Consensus 6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP---G 82 (222)
T cd01885 6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP---G 82 (222)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC---C
Confidence 699999999999999865432211100 112222211222331 1 6789999999 9
Q ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..+- ..+.. .+..+.|++|||+++...++.+....+..... . -...||+.++.|.+
T Consensus 83 ~~~f-------~~~~~----~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~--~~p~ilviNKiD~~ 138 (222)
T cd01885 83 HVDF-------SSEVT----AALRLCDGALVVVDAVEGVCVQTETVLRQALK---E--RVKPVLVINKIDRL 138 (222)
T ss_pred cccc-------HHHHH----HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence 8652 12222 23356899999999876677777666555443 1 23689999999975
No 202
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.44 E-value=3.1e-06 Score=78.38 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=67.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +| ..|.++||| |..+-. .+. .
T Consensus 5 vlG~~gvGKTSLi~r~~~~~-f~~~y~--pTi~d~~~k~~~i-~~~~~~l~I~Dt~---G~~~~~--------~~~---~ 66 (247)
T cd04143 5 VLGASKVGKTAIVSRFLGGR-FEEQYT--PTIEDFHRKLYSI-RGEVYQLDILDTS---GNHPFP--------AMR---R 66 (247)
T ss_pred EECcCCCCHHHHHHHHHcCC-CCCCCC--CChhHhEEEEEEE-CCEEEEEEEEECC---CChhhh--------HHH---H
Confidence 37999999999999999765 653321 1111222333456 66 467899999 864311 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhc-------cccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFG-------KKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG-------~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|+||||++++++-+=++ ...+..+..... ...-..+||+.|+.|...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 23457899999999874433222 223333433211 112457899999999754
No 203
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.44 E-value=1.8e-06 Score=73.63 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||+++.+++.. |.....+ ++.... .....+ +|. .+.++||| |..+... + ...
T Consensus 7 iG~~~~GKTsl~~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~---G~~~~~~--------~---~~~ 68 (175)
T cd01870 7 VGDGACGKTCLLIVFSKDQ-FPEVYVP-TVFENY-VADIEV-DGKQVELALWDTA---GQEDYDR--------L---RPL 68 (175)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCCC-ccccce-EEEEEE-CCEEEEEEEEeCC---Cchhhhh--------c---ccc
Confidence 6999999999999999864 5422211 111111 223345 665 57899999 8643211 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++++|+.++++-+-+. ...+..+.... .-.+++||.|+.|....
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND 120 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence 3468899999999874321111 11222333221 13578999999996543
No 204
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.43 E-value=1.8e-06 Score=89.44 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=68.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
.+|.+|+||||++|.|+|....... +...|.+--.....++ .-..++|+||| |..+
T Consensus 9 IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp---G~e~-- 81 (590)
T TIGR00491 9 VLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP---GHEA-- 81 (590)
T ss_pred EECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECC---CcHh--
Confidence 3699999999999999998643221 1223332111111110 00248999999 8532
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
... .......+.|++|||+++...++.+....+..+... -...||++|+.|...
T Consensus 82 -----f~~----l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 -----FTN----LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred -----HHH----HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 111 112234689999999998766777777777665432 346899999999764
No 205
>PLN03108 Rab family protein; Provisional
Probab=98.41 E-value=7e-06 Score=73.55 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.+ |..... ..++.........+ +|. .+.++||| |.-. . ..+..
T Consensus 11 ivG~~gvGKStLi~~l~~~~-~~~~~~-~ti~~~~~~~~i~~-~~~~i~l~l~Dt~---G~~~-------~-~~~~~--- 73 (210)
T PLN03108 11 IIGDTGVGKSCLLLQFTDKR-FQPVHD-LTIGVEFGARMITI-DNKPIKLQIWDTA---GQES-------F-RSITR--- 73 (210)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCC-CCccceEEEEEEEE-CCEEEEEEEEeCC---CcHH-------H-HHHHH---
Confidence 47999999999999999875 332111 12222222233455 664 56799999 8421 1 11111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|||+++.++-+-+.. ..+..+....+ .-..+|||.|+.|...
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 123478999999998632221211 12222333322 2346889999988644
No 206
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.8e-05 Score=77.47 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=78.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE--------------------------------------------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM-------------------------------------------- 38 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~-------------------------------------------- 38 (307)
.|.|++||||++|++|-+++..++.. .|+.|-.
T Consensus 115 fGrts~GKSt~iNAmL~~klLP~g~g---h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~sL 191 (749)
T KOG0448|consen 115 FGRTSAGKSTVINAMLHKKLLPSGIG---HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAGSL 191 (749)
T ss_pred eCCCCCcHHHHHHHHHHHhhCccccc---ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcceE
Confidence 59999999999999999987766543 2333321
Q ss_pred EEEEEeCC------eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972 39 QRTMLKDG------QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL 112 (307)
Q Consensus 39 ~~~~~~~G------r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~ 112 (307)
.+.-||++ -.|++||.| |+.-+. .....|-+ +...+|+|+||+.+.+.+|..+++.+...-+-
T Consensus 192 lrV~~p~~~csLLrnDivliDsP---Gld~~s----e~tswid~----~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~ 260 (749)
T KOG0448|consen 192 LRVFWPDDKCSLLRNDIVLIDSP---GLDVDS----ELTSWIDS----FCLDADVFVLVVNAENTLTLSEKQFFHKVSEE 260 (749)
T ss_pred EEEEecCccchhhhccceeccCC---CCCCch----hhhHHHHH----HhhcCCeEEEEecCccHhHHHHHHHHHHhhcc
Confidence 11133344 278999999 986322 11222322 23468999999999999999999888776652
Q ss_pred hccccCCeEEEEEecCCCCCC
Q 044972 113 FGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 113 FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..|+.||-.+||....
T Consensus 261 -----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 -----KPNIFILNNKWDASAS 276 (749)
T ss_pred -----CCcEEEEechhhhhcc
Confidence 6788999999998754
No 207
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.39 E-value=3.1e-06 Score=73.50 Aligned_cols=107 Identities=19% Similarity=-0.000 Sum_probs=62.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee-EEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC-EMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c-~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||++..+++.. |.....+ |... ......+ +| ..+.+.||| |..+.. .+. .
T Consensus 7 iG~~~vGKSsli~~~~~~~-f~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~ 67 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNA-FPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD--------RLR---P 67 (174)
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCcCCC---cceeeeEEEEEE-CCEEEEEEEEECC---Cchhhh--------hhh---h
Confidence 6999999999999999754 5433221 2111 1122345 66 467899999 853211 111 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.|++|||+++.++-|-+.. ..+..+... . -..++|||.|+.|..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~--~~~piilvgnK~Dl~ 118 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C--PNTPIILVGTKLDLR 118 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEeeChhhc
Confidence 345689999999999733222221 122223322 1 135789999999854
No 208
>PRK12288 GTPase RsgA; Reviewed
Probab=98.38 E-value=3.9e-07 Score=88.67 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS 63 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt 63 (307)
+|.||||||||+|+|+|.....++.-+. -.|+..+... ++.| ..||||| ||-.-
T Consensus 211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~--l~~~--~~liDTP---Gir~~ 270 (347)
T PRK12288 211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH--FPHG--GDLIDSP---GVREF 270 (347)
T ss_pred ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE--ecCC--CEEEECC---CCCcc
Confidence 7999999999999999998776543322 1344444333 3222 2599999 77543
No 209
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.35 E-value=9.7e-06 Score=84.15 Aligned_cols=110 Identities=16% Similarity=0.159 Sum_probs=73.7
Q ss_pred CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|..++|||||.+.||.. ..|..... ..+.|-.+......| +|..+++|||| |..|
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTP---Gh~D------ 76 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTP---GHAD------ 76 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECC---CHHH------
Confidence 699999999999999964 23422110 123455555566788 99999999999 8744
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...++.+++ ..+|++|||+++......+.+..+..+.. + -...||++|+.|...
T Consensus 77 -F~~ev~~~l----~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~----~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 77 -FGGEVERVL----GMVDGVLLLVDASEGPMPQTRFVLKKALE-L----GLKPIVVINKIDRPS 130 (594)
T ss_pred -HHHHHHHHH----HhCCEEEEEEeCCCCCcHHHHHHHHHHHH-C----CCCEEEEEECCCCCC
Confidence 223444333 35799999999864455555555555544 2 235789999999654
No 210
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.35 E-value=1.4e-07 Score=82.52 Aligned_cols=56 Identities=20% Similarity=0.032 Sum_probs=31.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|++||||||++|+|+|...+.++.- ....|+..+... +++ ...||||| ||.+...
T Consensus 41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l~~--g~~iIDTP---Gf~~~~l 102 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--LPD--GGYIIDTP---GFRSFGL 102 (161)
T ss_dssp ECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--ETT--SEEEECSH---HHHT--G
T ss_pred ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--cCC--CcEEEECC---CCCcccc
Confidence 69999999999999999866544221 122333433332 322 45899999 9876554
No 211
>PRK13351 elongation factor G; Reviewed
Probab=98.34 E-value=4.3e-06 Score=87.83 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=73.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|..|+||||+.|.++......+..+ ..+.|-.+......| .+..+++|||| |..|.
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtP---G~~df--- 86 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTP---GHIDF--- 86 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECC---CcHHH---
Confidence 69999999999999985421111000 123344444556778 99999999999 97541
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+...+ ....|++|||+++....+.+....+..+... -...+|++|+.|....
T Consensus 87 ----~~~~~~~----l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ----TGEVERS----LRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred ----HHHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 1223322 3467999999998756666666666554432 3467889999997643
No 212
>PRK10218 GTP-binding protein; Provisional
Probab=98.33 E-value=3.8e-06 Score=87.28 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|..|+|||||.+.+|+. ..|..... ..+.|-.+......| ++..+++|||| |..|..
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTP---G~~df~---- 82 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTP---GHADFG---- 82 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECC---CcchhH----
Confidence 699999999999999974 33432211 123444444556678 89999999999 875522
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.++.. .....|++|||+++......+.+..+..+... -...||++|+.|...
T Consensus 83 ---~~v~~----~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~ 134 (607)
T PRK10218 83 ---GEVER----VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPG 134 (607)
T ss_pred ---HHHHH----HHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCC
Confidence 12222 23578999999998756666666666655442 345689999999653
No 213
>PTZ00416 elongation factor 2; Provisional
Probab=98.33 E-value=1.7e-06 Score=92.91 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=85.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCC--------------CCCceeEEEEEEEeC----------CeEEEEEeCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSS--------------EDTKTCEMQRTMLKD----------GQVVNVIDTPAI 57 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~--------------svT~~c~~~~~~~~~----------Gr~v~VIDTP~~ 57 (307)
.+|..++|||||.+.||+.....+..... +.|-.+......| . +..+++||||
T Consensus 24 iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~~~~~~~~~~~i~liDtP-- 100 (836)
T PTZ00416 24 VIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYY-EHDLEDGDDKQPFLINLIDSP-- 100 (836)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEe-ecccccccCCCceEEEEEcCC--
Confidence 37999999999999999854432211110 1111111123344 3 6789999999
Q ss_pred CCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC-Ccc
Q 044972 58 ARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED-NDE 136 (307)
Q Consensus 58 ~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~-~~~ 136 (307)
|..| ...++. .+....|+.|||+++...++.+...+++.+... ..++||++|+.|.+-- -+.
T Consensus 101 -G~~~-------f~~~~~----~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~~~~~~~ 163 (836)
T PTZ00416 101 -GHVD-------FSSEVT----AALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRAILELQL 163 (836)
T ss_pred -CHHh-------HHHHHH----HHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhhhhhcCC
Confidence 9865 223333 334678999999998767888888777766642 3578999999998621 113
Q ss_pred cHHHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972 137 TLEDYLGPECPKPLKEILQLCDNRRVLFD 165 (307)
Q Consensus 137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fn 165 (307)
+.+++.. .+..+|+....++..|+
T Consensus 164 ~~~~~~~-----~~~~ii~~in~~l~~~~ 187 (836)
T PTZ00416 164 DPEEIYQ-----NFVKTIENVNVIIATYN 187 (836)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 4444333 35666666654443333
No 214
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.32 E-value=2.9e-06 Score=85.09 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=79.3
Q ss_pred CCCCCCcHHHHHHHHHCCC---------------------cc----cccc----CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRR---------------------AF----KSKV----GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~---------------------~F----~s~~----s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|..++|||||...||..- .| .... ...+.|.........+ +++.+++||
T Consensus 13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~~~i~lID 91 (446)
T PTZ00141 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYYFTIID 91 (446)
T ss_pred EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CCeEEEEEE
Confidence 6999999999999887421 01 0000 0124455555555677 899999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-C------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-F------SEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-f------T~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |.. +...++. .+...+|+.|||+++... | ..+.+..+..+..+ -..+.||++|
T Consensus 92 tP---Gh~-------~f~~~~~----~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~----gi~~iiv~vN 153 (446)
T PTZ00141 92 AP---GHR-------DFIKNMI----TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL----GVKQMIVCIN 153 (446)
T ss_pred CC---ChH-------HHHHHHH----HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc----CCCeEEEEEE
Confidence 99 842 2333333 334578999999998632 2 23444444444332 3578899999
Q ss_pred cCCCC--CCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 127 RGDEL--EDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 127 ~~D~L--~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+.|.. +-+...++..+ ..++.++...|.
T Consensus 154 KmD~~~~~~~~~~~~~i~-----~~i~~~l~~~g~ 183 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIK-----KEVSAYLKKVGY 183 (446)
T ss_pred ccccccchhhHHHHHHHH-----HHHHHHHHhcCC
Confidence 99942 21112233222 246777766553
No 215
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=5e-07 Score=88.10 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|+|||||||++|+|+|.....++.-+. ..|+..+.. .+++|. .||||| ||.....
T Consensus 178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g~--~liDTP---G~~~~~l 239 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNGG--LLADTP---GFNQPDL 239 (352)
T ss_pred EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCCc--EEEeCC---Ccccccc
Confidence 7999999999999999987765443221 135544433 232332 799999 9875543
No 216
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.32 E-value=6.9e-06 Score=74.96 Aligned_cols=108 Identities=20% Similarity=0.059 Sum_probs=66.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.+ |... ..|.........+ ....+.|+||| |.-... . +. ....
T Consensus 6 vG~~~vGKTSLi~r~~~~~-f~~~----~~Tig~~~~~~~~-~~~~l~iwDt~---G~e~~~----~----l~---~~~~ 65 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERR-FKDT----VSTVGGAFYLKQW-GPYNISIWDTA---GREQFH----G----LG---SMYC 65 (220)
T ss_pred ECCCCCcHHHHHHHHhcCC-CCCC----CCccceEEEEEEe-eEEEEEEEeCC---Ccccch----h----hH---HHHh
Confidence 6999999999999999876 4321 1233333333345 56689999999 853211 1 11 1224
Q ss_pred CCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|||+++.++-|-++.. .+..+....++ -..+|||.|+.|...
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 6899999999987543333321 22223333222 246889999999654
No 217
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.31 E-value=8.1e-06 Score=70.90 Aligned_cols=108 Identities=18% Similarity=0.048 Sum_probs=65.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE-EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM-QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~-~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||+++.+++.. |.... ..|..... ....+ +| ..+.+.||| |-.... .+. .
T Consensus 7 vG~~~vGKTsl~~~~~~~~-f~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~ 67 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNK-FPSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTA---GQEDYD--------RLR---P 67 (175)
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCCC---CCceeeeeEEEEEE-CCEEEEEEEEECC---Cccchh--------hhh---h
Confidence 6999999999999999864 64322 22322211 13345 66 467799999 874321 111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.|+||||+++.++-|-+.. ..+..+... .+ -.++|||-|+.|...
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~~--~~piilvgnK~Dl~~ 119 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CP--KTPFLLVGTQIDLRD 119 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEECHhhhh
Confidence 244688999999998744333322 123333332 22 357899999998643
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.29 E-value=7.3e-06 Score=74.15 Aligned_cols=108 Identities=14% Similarity=-0.044 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE--EEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ--RTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~--~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
.+|.+||||||+++.++..+ |..... .|..+... .... ++ ..+.++||| |..... .+.
T Consensus 18 vvG~~gvGKTsli~~~~~~~-f~~~~~---~tig~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~-- 79 (219)
T PLN03071 18 IVGDGGTGKTTFVKRHLTGE-FEKKYE---PTIGVEVHPLDFFT-NCGKIRFYCWDTA---GQEKFG--------GLR-- 79 (219)
T ss_pred EECcCCCCHHHHHHHHhhCC-CCCccC---CccceeEEEEEEEE-CCeEEEEEEEECC---Cchhhh--------hhh--
Confidence 37999999999999987654 543222 23223222 2223 33 488999999 863311 111
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
.....+.|++|||+++.++-+-+.. ..+..+.... --..+|||.|+.|..
T Consensus 80 -~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 130 (219)
T PLN03071 80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (219)
T ss_pred -HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence 1234688999999998754333221 2223333321 235788999998853
No 219
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=7.8e-07 Score=82.36 Aligned_cols=54 Identities=17% Similarity=-0.004 Sum_probs=36.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|+|||||||++|.|+|.....++.-+ ...|+..+.... - +| .||||| ||....
T Consensus 126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~-~~---~liDtP---G~~~~~ 185 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H-GG---LIADTP---GFNEFG 185 (245)
T ss_pred ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C-Cc---EEEeCC---CccccC
Confidence 699999999999999998766543221 124555554432 1 33 899999 886544
No 220
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.28 E-value=1.2e-05 Score=72.35 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=67.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|..||||||+++.++... |..... .+++..+......+ +| ..+.+.||| |-... ..+ ...
T Consensus 6 lG~~gVGKTSli~r~~~~~-f~~~~~-~Ti~~~~~~~~i~~-~~~~v~l~iwDta---Gqe~~--------~~l---~~~ 68 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDT-FCEACK-SGVGVDFKIKTVEL-RGKKIRLQIWDTA---GQERF--------NSI---TSA 68 (202)
T ss_pred ECcCCCCHHHHHHHHHhCC-CCCcCC-CcceeEEEEEEEEE-CCEEEEEEEEeCC---Cchhh--------HHH---HHH
Confidence 6999999999999999754 654322 22233444445566 77 467899999 85211 111 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
...+.|++|||+++.++-|-++.. -+..+....++ --.+|||-|+.|..
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~ 118 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE 118 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccc
Confidence 456899999999987443333321 22333333322 24678888988854
No 221
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.27 E-value=1.4e-05 Score=70.96 Aligned_cols=137 Identities=13% Similarity=0.008 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|..||||||+++.+.+.. |..... ..++..+......+ +| ..+.|.||| |.... ..+. ..
T Consensus 12 iG~~~vGKTsll~~~~~~~-~~~~~~-~t~~~~~~~~~i~~-~~~~~~l~iwDt~---G~~~~--------~~l~---~~ 74 (189)
T cd04121 12 VGDSDVGKGEILASLQDGS-TESPYG-YNMGIDYKTTTILL-DGRRVKLQLWDTS---GQGRF--------CTIF---RS 74 (189)
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCCCC-CcceeEEEEEEEEE-CCEEEEEEEEeCC---CcHHH--------HHHH---HH
Confidence 6999999999999999753 543322 12333443444455 77 467889999 86321 1111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|+||||+++.++-|-+... -+..+...+ + --..|||-|+.|.-.. .. +. ....+.+.+..+-
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~~--~~----v~---~~~~~~~a~~~~~ 142 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAFK--RQ----VA---TEQAQAYAERNGM 142 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchhc--cC----CC---HHHHHHHHHHcCC
Confidence 346899999999997544433322 233333322 2 3467888888885332 11 11 1235666666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+-..-++
T Consensus 143 ~~~e~SAk~ 151 (189)
T cd04121 143 TFFEVSPLC 151 (189)
T ss_pred EEEEecCCC
Confidence 665554443
No 222
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.27 E-value=1.7e-06 Score=84.46 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=47.5
Q ss_pred CCCCCCcHHHHHHHHHCCCc-----cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRA-----FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-----F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
+|.|||||||++|+|++... +.+. +..+.|..... ..+ +..+.||||| |+.....-...+..+-.+.
T Consensus 160 vG~~nvGKStliN~l~~~~~~~~~~~~~s-~~pgtT~~~~~--~~~--~~~~~l~DtP---G~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQNNGDKDVITTS-PFPGTTLDLIE--IPL--DDGHSLYDTP---GIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred ECCCCCCHHHHHHHHHhhccCCcceeeec-CCCCeEeeEEE--EEe--CCCCEEEECC---CCCChhHhhhhcCHHHHhh
Confidence 69999999999999998642 2221 12234444332 223 3457899999 9986531112222211111
Q ss_pred HHhcCCCCeEEEEEEeCC
Q 044972 78 IGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~ 95 (307)
+ .-..+++.+.++++.+
T Consensus 232 ~-~~~~~i~~~~~~l~~~ 248 (360)
T TIGR03597 232 I-TPKKEIKPKTYQLNPN 248 (360)
T ss_pred c-CCCCccCceEEEeCCC
Confidence 1 1123567777777665
No 223
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=84.65 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF 67 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~ 67 (307)
+|-|||||||++|+|+|+....++.- .++|+.-+.-. -+..+.++||| |+.-++..+
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtP---Gii~~~~~~ 194 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTP---GIIPPKFDD 194 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCC---CcCCCCccc
Confidence 69999999999999999998655432 36666554433 23459999999 987655433
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.26 E-value=7.9e-06 Score=84.68 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----CC------------eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----DG------------QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----~G------------r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+|+||||++|.|.|....... +...|.+--.....++ .| ..++++||| |..+.
T Consensus 12 ~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP---G~e~f-- 84 (586)
T PRK04004 12 LGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP---GHEAF-- 84 (586)
T ss_pred ECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECC---ChHHH--
Confidence 699999999999999987543221 1122221100000000 01 127999999 86331
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..... ....+.|++|||+++...+..+....+..+.. .-..++|++|+.|..
T Consensus 85 -----~~~~~----~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 -----TNLRK----RGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred -----HHHHH----HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 11111 23356899999999875677777777766543 234589999999975
No 225
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.25 E-value=7.3e-06 Score=81.08 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=46.3
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
++.+++|||| |- ++....+.. ....+|++|||+++...+ ..+....+..+ ..+| .+++||+
T Consensus 79 ~~~i~liDtP---Gh-------~~f~~~~~~----g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVv 140 (406)
T TIGR03680 79 LRRVSFVDAP---GH-------ETLMATMLS----GAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIV 140 (406)
T ss_pred ccEEEEEECC---CH-------HHHHHHHHH----HHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEE
Confidence 5789999999 84 233333333 234689999999997444 44444545443 3343 3578999
Q ss_pred EecCCCCCC
Q 044972 125 FTRGDELED 133 (307)
Q Consensus 125 fT~~D~L~~ 133 (307)
+|+.|....
T Consensus 141 vNK~Dl~~~ 149 (406)
T TIGR03680 141 QNKIDLVSK 149 (406)
T ss_pred EEccccCCH
Confidence 999997754
No 226
>PRK00098 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.6e-06 Score=80.96 Aligned_cols=54 Identities=24% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
.+|++||||||++|+|+|.....++.-+. ..|+..+.. .+ ++ ...||||| |+..
T Consensus 169 ~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~~-~~~~~Dtp---G~~~ 228 (298)
T PRK00098 169 LAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-PG-GGLLIDTP---GFSS 228 (298)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-CC-CcEEEECC---CcCc
Confidence 47999999999999999987665432211 134333332 23 22 24899999 7764
No 227
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.24 E-value=3.3e-05 Score=69.58 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=82.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE--EEEEe----CCe--EEEEEeCCCCCCCCCCCcCHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ--RTMLK----DGQ--VVNVIDTPAIARLFDSSADFEFVSKE 73 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~--~~~~~----~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~e 73 (307)
.+|.+||||||++|.+++.. |.... ..|-.|... ...++ +|. .+.+.||+ |--.
T Consensus 5 lvGd~gVGKTSLi~~~~~~~-f~~~~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDta---G~e~----------- 66 (202)
T cd04102 5 VVGDSGVGKSSLVHLICKNQ-VLGRP---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVG---GSES----------- 66 (202)
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCC---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecC---Cchh-----------
Confidence 36999999999999999875 54322 223333322 22231 133 57899999 7521
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh---------------------hccccCCeEEEEEecCCCCC
Q 044972 74 IVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL---------------------FGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 74 I~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~---------------------FG~~~~~~~IVLfT~~D~L~ 132 (307)
..........+.|++|||+++.++-|-+.. -.|+..+ |+. -.-.+|||-|+.|..+
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l--~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~-~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNL--QRWSLEALNKDTFPTGLLVTNGDYDSEQFGG-NQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHH--HHHHHHHHHhhccccccccccccccccccCC-CCceEEEEEECccchh
Confidence 111223456799999999999855444432 2333332 111 1347889999999754
Q ss_pred CCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCC
Q 044972 133 DNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTK 169 (307)
Q Consensus 133 ~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~ 169 (307)
....+-+.-+. .-..+.++||.-....|.+..
T Consensus 144 ~r~~~~~~~~~-----~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 144 EKESSGNLVLT-----ARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred hcccchHHHhh-----HhhhHHHhcCCceEEEecCCc
Confidence 31011111111 134566778888777776543
No 228
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.24 E-value=1.3e-05 Score=73.29 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=63.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |.....+ .+..... ....+ +|. .+.+.||| |-.. ......+
T Consensus 7 vGd~~vGKTsLi~~~~~~~-f~~~y~p-Ti~~~~~-~~~~~-~~~~v~L~iwDt~---G~e~-----------~~~l~~~ 68 (222)
T cd04173 7 VGDAECGKTALLQVFAKDA-YPGSYVP-TVFENYT-ASFEI-DKRRIELNMWDTS---GSSY-----------YDNVRPL 68 (222)
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCccCC-ccccceE-EEEEE-CCEEEEEEEEeCC---CcHH-----------HHHHhHH
Confidence 6999999999999999865 6433221 1111221 23445 665 56779999 8421 1111234
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~ 132 (307)
+.++.|+||||+++.++-|-+. +...+...+-. ..--++|||.|+.|...
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~--i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDS--VLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 6789999999999874322111 21211111111 11247889999998644
No 229
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.23 E-value=9.7e-06 Score=83.05 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.+|+||||+.+.||-...+....+. .+.|-........| +|..+++|||| |..|
T Consensus 17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP---G~~d 92 (527)
T TIGR00503 17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP---GHED 92 (527)
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC---Chhh
Confidence 699999999999999743222111000 01222233345677 89999999999 9743
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
...++.++ ....|++|+|+++...+.......++.... ....+||++++.|..
T Consensus 93 -------f~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 93 -------FSEDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred -------HHHHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 22233333 346899999999875566555555543332 235789999999864
No 230
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.23 E-value=9.6e-06 Score=72.80 Aligned_cols=107 Identities=15% Similarity=-0.080 Sum_probs=65.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
+|.+||||||+++.+++.. |.... ..|.. +......+ ++ ..+.|+||| |-... ....
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~---~~Tig~~~~~~~~~~-~~~~~~l~iwDt~---G~e~~-----------~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLVFHT-NRGPIRFNVWDTA---GQEKF-----------GGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEE-CCEEEEEEEEECC---Cchhh-----------hhhh
Confidence 6999999999999999653 64332 22322 22233334 44 488999999 85321 1112
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
.....+.|++|||+++.++.|-+.. .-+..+.... + --..|||.|+.|..
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence 2345689999999998754433322 2233344332 1 34788999999853
No 231
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=2.8e-06 Score=80.38 Aligned_cols=54 Identities=22% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
.+|++||||||++|+|+|...+.++.-+ ..+|+..+.. .+ .+ ...||||| |+.+
T Consensus 166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~--~~-~~-~~~liDtP---G~~~ 225 (287)
T cd01854 166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF--PL-PG-GGLLIDTP---GFRE 225 (287)
T ss_pred EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE--Ec-CC-CCEEEECC---CCCc
Confidence 4799999999999999998776554221 1234443332 23 21 23799999 8843
No 232
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.22 E-value=9.7e-06 Score=70.85 Aligned_cols=109 Identities=16% Similarity=0.018 Sum_probs=63.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++|+||||++|.|++.. |.....+ ++..... ....+ +|. .+.++||| |........ ..
T Consensus 7 vG~~g~GKStLl~~l~~~~-~~~~~~~-t~~~~~~-~~~~~-~~~~~~l~i~Dt~---g~~~~~~~~-----------~~ 68 (187)
T cd04129 7 VGDGACGKTSLLSVFTLGE-FPEEYHP-TVFENYV-TDCRV-DGKPVQLALWDTA---GQEEYERLR-----------PL 68 (187)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCcccCC-cccceEE-EEEEE-CCEEEEEEEEECC---CChhccccc-----------hh
Confidence 6999999999999998543 4322211 1112222 23345 654 46788999 864321110 01
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|+|+.++++-+-++ ..-+..+....+ -..+|||.|+.|...
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~ 119 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ 119 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence 2357899999999873322222 123344443322 367999999999543
No 233
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.21 E-value=1.2e-05 Score=70.32 Aligned_cols=108 Identities=11% Similarity=-0.009 Sum_probs=64.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |.....+ .+.... .....+ +|. .+.+.||| |--.. ..+ ...
T Consensus 7 vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~-~~~~~~-~~~~~~l~iwDt~---G~~~~--------~~~---~~~ 68 (178)
T cd04131 7 VGDVQCGKTALLQVFAKDC-YPETYVP-TVFENY-TASFEI-DEQRIELSLWDTS---GSPYY--------DNV---RPL 68 (178)
T ss_pred ECCCCCCHHHHHHHHHhCc-CCCCcCC-ceEEEE-EEEEEE-CCEEEEEEEEECC---Cchhh--------hhc---chh
Confidence 6999999999999999864 6433221 111111 123345 664 57799999 84211 011 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
...+.|++|||+++.++-|=+. ..-+..+.... + -..+|||-|+.|..
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~--~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-P--NTKVLLVGCKTDLR 118 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-C--CCCEEEEEEChhhh
Confidence 4678999999999974433332 12233344432 2 24788899999853
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.20 E-value=1.7e-05 Score=81.26 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=67.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.+|+||||+.+.||-.....+..+. .+.|-........| +|..+++|||| |..|
T Consensus 16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP---G~~d 91 (526)
T PRK00741 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP---GHED 91 (526)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC---Cchh
Confidence 699999999999999832111100000 01111222345677 89999999999 9754
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
- ..+..+++ ...|++|+|+++...........+..... .-..+||+.++.|...
T Consensus 92 f-------~~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 92 F-------SEDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred h-------HHHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence 2 12333333 46899999999865565555555444332 2356889999998654
No 235
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.18 E-value=1.7e-05 Score=69.93 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=66.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||+++.+++.. |.....+ .+.... .....+ +|. .+.+.||+ |--. . ..+ ..
T Consensus 10 vvGd~~vGKTsli~~~~~~~-f~~~~~p-T~~~~~-~~~~~~-~~~~~~l~iwDta---G~e~-------~-~~~---~~ 71 (182)
T cd04172 10 VVGDSQCGKTALLHVFAKDC-FPENYVP-TVFENY-TASFEI-DTQRIELSLWDTS---GSPY-------Y-DNV---RP 71 (182)
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCccCC-ceeeee-EEEEEE-CCEEEEEEEEECC---Cchh-------h-Hhh---hh
Confidence 37999999999999999864 6433221 111111 223445 664 57899999 8421 0 111 22
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
+...+.|+||||+++.++-|-+. ..-+..+.... + ...+|||.|+.|.
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL 121 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDL 121 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhh
Confidence 45679999999999875533333 22334444433 2 2478899999985
No 236
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.18 E-value=2.6e-05 Score=68.36 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=65.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |.....+ ++..........+ +|. .+.+.||+ |-... ......
T Consensus 6 lG~~~vGKTsLi~~~~~~~-f~~~~~~-T~g~~~~~~~i~~-~~~~~~l~iwDt~---G~~~~-----------~~~~~~ 68 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGE-FDEDYIQ-TLGVNFMEKTISI-RGTEITFSIWDLG---GQREF-----------INMLPL 68 (182)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCCC-ccceEEEEEEEEE-CCEEEEEEEEeCC---CchhH-----------HHhhHH
Confidence 6999999999999999864 6432211 1111232334455 664 57899999 85321 112224
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++.++-+-++. ..+..+... .+. ...|+|.|+.|...
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~-~~~--~~pilVgnK~Dl~~ 118 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKT--AIPILVGTKYDLFA 118 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC--CCEEEEEEchhccc
Confidence 56789999999998754443332 222333322 222 23367899999753
No 237
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.17 E-value=2.5e-05 Score=69.17 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|..||||||+.|.+++....... .+..++.. .+...++. ...+.++||| |..+ +......
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~~~~Dt~---gq~~-----------~~~~~~~ 73 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLD--PAKTIEPYRRNIKLQLWDTA---GQEE-----------YRSLRPE 73 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcccC-CCceeeee--EEEEEEeCCCEEEEEeecCC---CHHH-----------HHHHHHH
Confidence 699999999999999998744322 21111111 11222213 2468889999 7532 2222334
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHH---HHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHS---LESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~---i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...|++++++|.... .+..-+..+-.+ +....+ ....+++|.++.|....
T Consensus 74 y~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 74 YYRGANGILIVYDST-LRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE 126 (219)
T ss_pred HhcCCCEEEEEEecc-cchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence 568999999999876 223333222222 333322 24567888888887655
No 238
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.17 E-value=1.3e-05 Score=83.17 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHCCCc------cccccC-------CCCCCceeEEEEEEEe--CC--eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA------FKSKVG-------SSEDTKTCEMQRTMLK--DG--QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~------F~s~~s-------~~svT~~c~~~~~~~~--~G--r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+|+||||+.+.++.... |..... ..+.|-........|. +| ..++++||| |..|.
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP---G~~dF-- 83 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP---GHVDF-- 83 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC---CcHHH--
Confidence 69999999999999997532 211110 0133333233333441 23 578999999 98652
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..++.++ ..+.|++|||+++....+.+....+..... .....|++.|+.|..
T Consensus 84 -----~~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 -----SYEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred -----HHHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 2233333 346789999999875666665544433322 123689999999964
No 239
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.17 E-value=1.1e-05 Score=77.60 Aligned_cols=85 Identities=13% Similarity=-0.009 Sum_probs=50.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--------------------CC---eEEEEEeCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--------------------DG---QVVNVIDTPAIA 58 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--------------------~G---r~v~VIDTP~~~ 58 (307)
.+|.|||||||++|.|.+... .+..- ...|.....+...++ +| .++.++|||
T Consensus 3 ivG~pnvGKStLfn~lt~~~~-~~~~~-pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a--- 77 (318)
T cd01899 3 LVGKPNAGKSTFFNAATLADV-EIANY-PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA--- 77 (318)
T ss_pred EECCCCCCHHHHHHHHhCCCC-cccCC-CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC---
Confidence 589999999999999999863 32211 113333333322210 23 479999999
Q ss_pred CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
|+.........+...+. ......|++++|+++.
T Consensus 78 Glv~ga~~~~glg~~fL----~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 78 GLVPGAHEGKGLGNKFL----DDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCCccchhhHHHHHH----HHHHHCCEEEEEEeCC
Confidence 99643211122222222 2234679999999985
No 240
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.16 E-value=1.9e-05 Score=78.98 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=70.2
Q ss_pred CCCCCCCcHHHHHHHHH------CCCccccccCCCC---------CCce--eEEEE--EEE--------------eCCeE
Q 044972 2 CACEYIKICTTTGNSIL------GRRAFKSKVGSSE---------DTKT--CEMQR--TML--------------KDGQV 48 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL------G~~~F~s~~s~~s---------vT~~--c~~~~--~~~--------------~~Gr~ 48 (307)
.+|++|||||||...|. |.++......... .+.. ..... ... ..+..
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~D 184 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFD 184 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCC
Confidence 47999999999999886 7665433221110 0000 00010 000 02679
Q ss_pred EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972 49 VNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRG 128 (307)
Q Consensus 49 v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~ 128 (307)
++||||| |-.. .+.....|+.+.... -.||.++||+++. .-.+.....+.+.+ ....+-|+||+-
T Consensus 185 vViIDTa---Gr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~--~Gq~a~~~a~~F~~-----~~~~~g~IlTKl 249 (429)
T TIGR01425 185 IIIVDTS---GRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGS--IGQAAEAQAKAFKD-----SVDVGSVIITKL 249 (429)
T ss_pred EEEEECC---CCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccc--cChhHHHHHHHHHh-----ccCCcEEEEECc
Confidence 9999999 9754 346677888776533 3689999999864 22333334444443 345788889998
Q ss_pred CCCC
Q 044972 129 DELE 132 (307)
Q Consensus 129 D~L~ 132 (307)
|.-.
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 8643
No 241
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.13 E-value=1.3e-05 Score=79.45 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=52.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE--------------------eCC---eEEEEEeCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML--------------------KDG---QVVNVIDTPAIA 58 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~--------------------~~G---r~v~VIDTP~~~ 58 (307)
.+|.|||||||++|.|.+.++-.+.. ...|..+..+...+ ++| -++.++|||
T Consensus 6 ivG~pnvGKSTlfn~Lt~~~~~~~~y--~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a--- 80 (396)
T PRK09602 6 LVGKPNVGKSTFFNAATLADVEIANY--PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA--- 80 (396)
T ss_pred EECCCCCCHHHHHHHHhCCcccccCC--CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC---
Confidence 47999999999999999986422221 22344444443221 133 468899999
Q ss_pred CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
||.........+...... .....|++|+|+++.
T Consensus 81 Gl~~ga~~g~glg~~fL~----~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLD----DLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 997532222223222222 234689999999985
No 242
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.13 E-value=6.5e-05 Score=67.06 Aligned_cols=110 Identities=14% Similarity=-0.050 Sum_probs=57.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|++||||||++|.++... |.....+ ++............ .+..+.++||| |-.+. ..+. ...
T Consensus 15 iG~~g~GKTtLi~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~i~i~~~Dt~---g~~~~--------~~~~---~~~ 78 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGE-FEKKYIP-TLGVEVHPLKFYTNCGPICFNVWDTA---GQEKF--------GGLR---DGY 78 (215)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCCC-ccceEEEEEEEEECCeEEEEEEEECC---Cchhh--------hhhh---HHH
Confidence 6999999999998655433 4322211 11111212222220 22578899999 84321 1111 112
Q ss_pred CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..+.+++++|+++.++.|-.. ...+..+.... + ...++++.|+.|..
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVK 126 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCc
Confidence 346799999999864443322 12233333332 1 23566778888753
No 243
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.12 E-value=3e-05 Score=77.02 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+.++++||| |- +..... +......+|++|||+++...+ ..+....+..+.. .| ..+.+||+
T Consensus 85 ~~i~liDtP---G~-------~~f~~~----~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVl 146 (411)
T PRK04000 85 RRVSFVDAP---GH-------ETLMAT----MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQ 146 (411)
T ss_pred cEEEEEECC---CH-------HHHHHH----HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEE
Confidence 689999999 83 222222 223345789999999987444 5555555554432 22 34689999
Q ss_pred ecCCCCCC
Q 044972 126 TRGDELED 133 (307)
Q Consensus 126 T~~D~L~~ 133 (307)
|+.|..+.
T Consensus 147 NK~Dl~~~ 154 (411)
T PRK04000 147 NKIDLVSK 154 (411)
T ss_pred Eeeccccc
Confidence 99998754
No 244
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=5.2e-06 Score=79.20 Aligned_cols=63 Identities=19% Similarity=0.015 Sum_probs=38.0
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc----C--CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC---cCHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV----G--SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS---ADFEFVSK 72 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~----s--~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~---~~~~~i~~ 72 (307)
+|.+||||||++|+|++.....++. . ..-.|+........- +| .||||| ||...+ ...+++..
T Consensus 170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG---~iiDTP---Gf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GG---WIIDTP---GFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CC---EEEeCC---CCCccCcccCCHHHHHH
Confidence 6999999999999999965443222 1 122344333333222 34 689999 885433 34555544
No 245
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.11 E-value=2e-05 Score=68.73 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=84.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
..|.+||||||++|.|.+.+.... ..|.........+ ++..+.+.|.+ |=.. +.......
T Consensus 19 ilGl~~sGKTtll~~l~~~~~~~~-----~pT~g~~~~~i~~-~~~~~~~~d~g---G~~~-----------~~~~w~~y 78 (175)
T PF00025_consen 19 ILGLDGSGKTTLLNRLKNGEISET-----IPTIGFNIEEIKY-KGYSLTIWDLG---GQES-----------FRPLWKSY 78 (175)
T ss_dssp EEESTTSSHHHHHHHHHSSSEEEE-----EEESSEEEEEEEE-TTEEEEEEEES---SSGG-----------GGGGGGGG
T ss_pred EECCCccchHHHHHHhhhcccccc-----Ccccccccceeee-CcEEEEEEecc---cccc-----------ccccceee
Confidence 369999999999999997654332 2344555666777 99999999999 7321 01112234
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCCCC-cccHHHhcCCCCCchHHHHHHhcC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELEDN-DETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~-~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
.+++|+++||++.. ... .-..+...+..++.... -.+++|++++-|..... ...+.+++.- ..|- .+
T Consensus 79 ~~~~~~iIfVvDss-d~~-~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~--~~ 148 (175)
T PF00025_consen 79 FQNADGIIFVVDSS-DPE-RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK--NK 148 (175)
T ss_dssp HTTESEEEEEEETT-GGG-GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT--SS
T ss_pred ccccceeEEEEecc-cce-eecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc--cC
Confidence 56899999999876 211 22334556666666543 35788888988865431 1234445431 1211 34
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
.++.++.-.+
T Consensus 149 ~~~~v~~~sa 158 (175)
T PF00025_consen 149 RPWSVFSCSA 158 (175)
T ss_dssp SCEEEEEEBT
T ss_pred CceEEEeeec
Confidence 5666665444
No 246
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.09 E-value=3.7e-05 Score=70.85 Aligned_cols=107 Identities=8% Similarity=-0.015 Sum_probs=63.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |.....+ .+..... ....+ +|. .+.|.||| |--. . ..+. ..
T Consensus 19 vGd~~VGKTsLi~r~~~~~-F~~~y~p-Ti~~~~~-~~i~~-~~~~v~l~iwDTa---G~e~-------~-~~~~---~~ 80 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDC-YPETYVP-TVFENYT-AGLET-EEQRVELSLWDTS---GSPY-------Y-DNVR---PL 80 (232)
T ss_pred ECCCCCcHHHHHHHHhcCC-CCCCcCC-ceeeeeE-EEEEE-CCEEEEEEEEeCC---Cchh-------h-HHHH---HH
Confidence 6999999999999999764 6543221 1111222 22345 554 67889999 8421 0 1111 23
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
...+.|+||||+++.++-|-+. ..-+..+.... + -..+|||.|+.|.
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL 129 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-P--STRILLIGCKTDL 129 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccc
Confidence 4679999999999974433222 12233344332 2 2368899999984
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.07 E-value=1.7e-05 Score=68.25 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=70.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++|+|||||.+.|.|.+.-- .-|... .+ .+ .+|||| |=|=- .. -+.+.+..++
T Consensus 7 iG~~g~GKTTL~q~L~~~~~~~------~KTq~i-----~~-~~---~~IDTP---GEyiE---~~----~~y~aLi~ta 61 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNGEEIRY------KKTQAI-----EY-YD---NTIDTP---GEYIE---NP----RFYHALIVTA 61 (143)
T ss_pred ECCCCCCHHHHHHHHcCCCCCc------Ccccee-----Ee-cc---cEEECC---hhhee---CH----HHHHHHHHHH
Confidence 6999999999999999976421 123322 23 22 459999 86521 11 1233344455
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
-..++|+||.++..+++- +---|..-+-+++|=|+|+.|...++ ..++ ..++.++.+|-+..
T Consensus 62 ~dad~V~ll~dat~~~~~--------~pP~fa~~f~~pvIGVITK~Dl~~~~-~~i~---------~a~~~L~~aG~~~i 123 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSV--------FPPGFASMFNKPVIGVITKIDLPSDD-ANIE---------RAKKWLKNAGVKEI 123 (143)
T ss_pred hhCCEEEEEecCCCCCcc--------CCchhhcccCCCEEEEEECccCccch-hhHH---------HHHHHHHHcCCCCe
Confidence 578999999998633211 11122233457899999999977331 2222 24566777776654
No 248
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.06 E-value=4.1e-05 Score=67.40 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=62.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-eEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-CEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||+++.++... |..... .|-. .-.....+ +|. .+.+.||| |-..- +.+. .
T Consensus 9 vG~~~vGKTsli~~~~~~~-f~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~e~~--------~~l~---~ 69 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNA-FPKEYI---PTVFDNYSAQTAV-DGRTVSLNLWDTA---GQEEY--------DRLR---T 69 (191)
T ss_pred ECCCCCCHHHHHHHHHhCC-CCcCCC---CceEeeeEEEEEE-CCEEEEEEEEECC---Cchhh--------hhhh---h
Confidence 6999999999999998754 643221 1211 11122345 664 57789999 85211 1121 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGA--AIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~--~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.|+||||+++.++-|=+... -+..+... .+ --.+|||-|+.|.-
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-~~--~~piilvgNK~DL~ 120 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-CP--NVPILLVGTKKDLR 120 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEeChhhh
Confidence 3457899999999987433322211 12222221 12 34788889988853
No 249
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.04 E-value=1e-05 Score=85.64 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHCCCc--------------cccccCCCCCCceeE----EEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRA--------------FKSKVGSSEDTKTCE----MQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~--------------F~s~~s~~svT~~c~----~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|..|+|||||.+.++.... |.......+.|-... .....| ++.++++|||| |..|..
T Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTP---G~~~f~ 100 (720)
T TIGR00490 25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTP---GHVDFG 100 (720)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCC---CccccH
Confidence 69999999999999984311 110000011222211 112456 78899999999 987622
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.++.. +....|++|||+++...++.+....+..+.. .....||++|+.|...
T Consensus 101 -------~~~~~----al~~aD~~llVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 101 -------GDVTR----AMRAVDGAIVVVCAVEGVMPQTETVLRQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred -------HHHHH----HHHhcCEEEEEEecCCCCCccHHHHHHHHHH-----cCCCEEEEEEChhccc
Confidence 12222 2356799999999865566666655554432 1235679999999764
No 250
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.02 E-value=8.7e-06 Score=69.13 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=35.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARL 60 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl 60 (307)
.+|.+|+||||++|.++|.....+... .+.|...+.. .. +..+.|+||| |+
T Consensus 106 ~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~--~~--~~~~~~~Dtp---Gi 156 (156)
T cd01859 106 VVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV--KI--TSKIYLLDTP---GV 156 (156)
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE--Ec--CCCEEEEECc---CC
Confidence 379999999999999998776554332 2345444322 22 3479999999 86
No 251
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.00 E-value=3.9e-05 Score=79.75 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=67.7
Q ss_pred CCCCCCcHHHHHHHHHCCC-cccccc------------CCCCCCceeEEEEEEEe--C--CeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKV------------GSSEDTKTCEMQRTMLK--D--GQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~------------s~~svT~~c~~~~~~~~--~--Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|..++||||+.+.||... .+.... ...+.|-........|. + +..+++|||| |..|.
T Consensus 13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP---Gh~dF-- 87 (600)
T PRK05433 13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP---GHVDF-- 87 (600)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC---CcHHH--
Confidence 6999999999999998642 111000 01133333333334441 2 4689999999 98652
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..++.+++ .+.|++|||+++....+.+....+..... .-...|+++|+.|...
T Consensus 88 -----~~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 88 -----SYEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPA 140 (600)
T ss_pred -----HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCc
Confidence 23333333 35789999999875666655544443322 1235899999999653
No 252
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.00 E-value=9.6e-06 Score=81.75 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-eEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-CEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|-|||||||+.|-+.-.++-. .+.+-|+. --.+.... .=...-||||| |+.|.-..+.-+. |+. .+.--
T Consensus 174 cG~PNVGKSSf~~~vtradvev---qpYaFTTksL~vGH~dy-kYlrwQViDTP---GILD~plEdrN~I-Emq-sITAL 244 (620)
T KOG1490|consen 174 CGYPNVGKSSFNNKVTRADDEV---QPYAFTTKLLLVGHLDY-KYLRWQVIDTP---GILDRPEEDRNII-EMQ-IITAL 244 (620)
T ss_pred ecCCCCCcHhhccccccccccc---CCcccccchhhhhhhhh-heeeeeecCCc---cccCcchhhhhHH-HHH-HHHHH
Confidence 6889999999888776554321 22233332 22233222 33577899999 9998543222121 111 12222
Q ss_pred CCCCeEEEEEEeCCC--CCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRN--RFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~--RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+.=.-||||+++++. .+|-++ ...+..|+.+| +.+.+|||+++.|-+..
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF---aNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF---ANKVTILVLNKIDAMRP 296 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh---cCCceEEEeecccccCc
Confidence 223568999999862 566554 55788899998 45568999999998765
No 253
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.99 E-value=1.3e-05 Score=67.38 Aligned_cols=136 Identities=16% Similarity=0.095 Sum_probs=78.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
+|++||||||+++.+.+.. |..... .|..+ ....... ++. .+.++||| |-.. -..+ .
T Consensus 5 vG~~~vGKtsl~~~~~~~~-~~~~~~---~t~~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~----~~~~----~--- 65 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGE-FPENYI---PTIGIDSYSKEVSI-DGKPVNLEIWDTS---GQER----FDSL----R--- 65 (162)
T ss_dssp EESTTSSHHHHHHHHHHSS-TTSSSE---TTSSEEEEEEEEEE-TTEEEEEEEEEET---TSGG----GHHH----H---
T ss_pred ECCCCCCHHHHHHHHHhhc-cccccc---cccccccccccccc-ccccccccccccc---cccc----cccc----c---
Confidence 6999999999999999765 543221 12212 2223334 565 58899999 8421 1111 1
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
.....+.|+|++|+++.++-+=+. ...+..+....+ ..-.++|+-|+.|..+.. . + .....+.+.+..
T Consensus 66 ~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~--~----v---~~~~~~~~~~~~ 134 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDER--E----V---SVEEAQEFAKEL 134 (162)
T ss_dssp HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGS--S----S---CHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccc--c----c---hhhHHHHHHHHh
Confidence 122457899999999873211111 123333343433 134788888998855421 1 1 123457777777
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+-.+-++
T Consensus 135 ~~~~~e~Sa~~ 145 (162)
T PF00071_consen 135 GVPYFEVSAKN 145 (162)
T ss_dssp TSEEEEEBTTT
T ss_pred CCEEEEEECCC
Confidence 77776666443
No 254
>PRK13768 GTPase; Provisional
Probab=97.98 E-value=5.6e-05 Score=70.30 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
..++||||| |..+...- ......+.+.+.-. .++++++|+++....+..+.....++....=.....++|+|+|
T Consensus 97 ~~~~~~d~~---g~~~~~~~-~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTP---GQMELFAF-RESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred CCEEEEeCC---cHHHHHhh-hHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 479999999 87543211 22223333333222 2899999999864455666554444331111124578999999
Q ss_pred cCCCCCC
Q 044972 127 RGDELED 133 (307)
Q Consensus 127 ~~D~L~~ 133 (307)
+.|.+..
T Consensus 171 K~D~~~~ 177 (253)
T PRK13768 171 KADLLSE 177 (253)
T ss_pred hHhhcCc
Confidence 9999876
No 255
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.94 E-value=0.00013 Score=72.87 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=74.7
Q ss_pred CCCCCCCcHHHHHHHHHCC----Ccc-----------ccccCCCC---CCceeEE---EEEEEeCC----eEEEEEeCCC
Q 044972 2 CACEYIKICTTTGNSILGR----RAF-----------KSKVGSSE---DTKTCEM---QRTMLKDG----QVVNVIDTPA 56 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~----~~F-----------~s~~s~~s---vT~~c~~---~~~~~~~G----r~v~VIDTP~ 56 (307)
-+|+.++||||++|.+.|. +.. .. .|..+ .|++... ...++.-+ -+|.+|||+
T Consensus 22 vvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELp-qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcv- 99 (492)
T TIGR02836 22 VVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELP-QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCV- 99 (492)
T ss_pred EEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccC-cCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECC-
Confidence 3799999999999999999 433 11 12223 3444433 22333222 589999999
Q ss_pred CCCCCCCCcC-HHHHHH-------------------HHHHHHHhcCCCCeEEEEEE-eCC------CCCCHHHHHHHHHH
Q 044972 57 IARLFDSSAD-FEFVSK-------------------EIVKCIGMAKDGIHAVLIVF-SVR------NRFSEEEGAAIHSL 109 (307)
Q Consensus 57 ~~Gl~Dt~~~-~~~i~~-------------------eI~kcv~ls~pGpha~LLVl-~~~------~RfT~ee~~~l~~i 109 (307)
|+.|.+.. ..+..+ ||--- ..-....++-|+|+ +.. ..+.+.|.+++..|
T Consensus 100 --G~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~-kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 100 --GYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTR-KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred --CcccCCCccceeccccccccCCcccccCchhhhhhhhHH-HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99876431 111111 11100 00012456777777 331 25788899999999
Q ss_pred HHhhccccCCeEEEEEecCCCCCC
Q 044972 110 ESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 110 ~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
++ .-+..|||++..|-+.+
T Consensus 177 k~-----~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 177 KE-----LNKPFIILLNSTHPYHP 195 (492)
T ss_pred Hh-----cCCCEEEEEECcCCCCc
Confidence 97 47889999999986543
No 256
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.94 E-value=5.1e-05 Score=81.77 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=70.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEe---------------CCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLK---------------DGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~---------------~Gr~v~VID 53 (307)
+|..++|||||.+.||......+.... .+.|-.+...+..|. ++..|++||
T Consensus 25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 104 (843)
T PLN00116 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID 104 (843)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence 699999999999999965433221110 011112212223331 267899999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|| |..| ...++..++ ...|+.|+|+++...+....+.+++.+.. .-..+||++|++|.+
T Consensus 105 tP---Gh~d-------F~~e~~~al----~~~D~ailVvda~~Gv~~~t~~~~~~~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 105 SP---GHVD-------FSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CC---CHHH-------HHHHHHHHH----hhcCEEEEEEECCCCCcccHHHHHHHHHH-----CCCCEEEEEECCccc
Confidence 99 8643 334444433 46789999999866677666666666554 245789999999987
No 257
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.91 E-value=7.6e-06 Score=82.55 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 044972 1 SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF 61 (307)
Q Consensus 1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~ 61 (307)
.|||=||||||||+|+|.|.+...+. +..+-|+.-|.... .-.|.+.|.| ||-
T Consensus 318 G~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~l----s~~v~LCDCP---GLV 370 (562)
T KOG1424|consen 318 GFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFL----SPSVCLCDCP---GLV 370 (562)
T ss_pred EeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEc----CCCceecCCC---Ccc
Confidence 49999999999999999998865432 23456776665432 3478999999 984
No 258
>PRK13796 GTPase YqeH; Provisional
Probab=97.91 E-value=1e-05 Score=79.14 Aligned_cols=53 Identities=17% Similarity=-0.017 Sum_probs=33.6
Q ss_pred CCCCCCcHHHHHHHHHCCC-----ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRR-----AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS 63 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-----~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt 63 (307)
+|.|||||||++|+|++.. ...++ ...++|...+. ..+ ++ ...+|||| |+...
T Consensus 166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~--~~l-~~-~~~l~DTP---Gi~~~ 223 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKEITGEKDVITTS-RFPGTTLDKIE--IPL-DD-GSFLYDTP---GIIHR 223 (365)
T ss_pred EcCCCCcHHHHHHHHHhhccCccceEEec-CCCCccceeEE--EEc-CC-CcEEEECC---Ccccc
Confidence 7999999999999999653 11111 12344544332 223 22 35899999 99643
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.91 E-value=3.9e-05 Score=72.27 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA----KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls----~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
.|..++||||| |.... +.....|+.+..... ...||-++||+++. ...++......+.+. ...
T Consensus 153 ~~~D~ViIDT~---G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~~~~~~~~~~f~~~-----~~~ 219 (272)
T TIGR00064 153 RNIDVVLIDTA---GRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TGQNALEQAKVFNEA-----VGL 219 (272)
T ss_pred CCCCEEEEeCC---CCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CCHHHHHHHHHHHhh-----CCC
Confidence 56799999999 87653 455666666544332 35799999999985 233433333333333 245
Q ss_pred EEEEEecCCCCC
Q 044972 121 MIVVFTRGDELE 132 (307)
Q Consensus 121 ~IVLfT~~D~L~ 132 (307)
.-|+||+-|.-.
T Consensus 220 ~g~IlTKlDe~~ 231 (272)
T TIGR00064 220 TGIILTKLDGTA 231 (272)
T ss_pred CEEEEEccCCCC
Confidence 788899988744
No 260
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=2.2e-05 Score=78.39 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKD-GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV 123 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~p-Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV 123 (307)
++..++||||| |+...+ .....++.+.+....+ -|+-.+||+++. ....+ +..+...| ......=+
T Consensus 298 ~~~D~VLIDTa---Gr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt--~~~~~---~~~~~~~f--~~~~~~gl 364 (432)
T PRK12724 298 DGSELILIDTA---GYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSST--SSYHH---TLTVLKAY--ESLNYRRI 364 (432)
T ss_pred CCCCEEEEeCC---CCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCC--CCHHH---HHHHHHHh--cCCCCCEE
Confidence 46789999999 986433 3445556555544333 477888999875 22222 33444455 34566778
Q ss_pred EEecCCCCC
Q 044972 124 VFTRGDELE 132 (307)
Q Consensus 124 LfT~~D~L~ 132 (307)
+||+-|.-.
T Consensus 365 IlTKLDEt~ 373 (432)
T PRK12724 365 LLTKLDEAD 373 (432)
T ss_pred EEEcccCCC
Confidence 899988643
No 261
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.85 E-value=0.00018 Score=61.51 Aligned_cols=102 Identities=19% Similarity=0.117 Sum_probs=61.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.+++.. |....++ ..... .....+ +|. .+.+.||+ |..+. .
T Consensus 6 vG~~gvGKTsli~~~~~~~-f~~~~~~--~~~~~-~~~i~~-~~~~~~l~i~D~~---g~~~~----------------~ 61 (158)
T cd04103 6 VGNLQSGKSALVHRYLTGS-YVQLESP--EGGRF-KKEVLV-DGQSHLLLIRDEG---GAPDA----------------Q 61 (158)
T ss_pred ECCCCCcHHHHHHHHHhCC-CCCCCCC--Cccce-EEEEEE-CCEEEEEEEEECC---CCCch----------------h
Confidence 6999999999999888653 5432221 11112 234566 784 47889999 87420 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGD 129 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D 129 (307)
...+.|+|+||+++.++-|=+. ...+..+....+. ..-+++||-|+.|
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~D 110 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDA 110 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHH
Confidence 1246899999999875443333 2333444433221 2236788888744
No 262
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.83 E-value=5.9e-05 Score=80.06 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEE--Ee-CCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTM--LK-DGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~--~~-~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|..++|||||.+.||......+.... .+.|-.+...+.. +. ++..|++|||| |..|-
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP---G~~df-- 100 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP---GHVDF-- 100 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC---CccCh--
Confidence 689999999999999864322211100 0111111111112 21 36789999999 98762
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..++..++ ...|++|+|+++...+..+....+...... | ...||++|+.|..
T Consensus 101 -----~~~~~~~l----~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 101 -----GGDVTRAM----RAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred -----HHHHHHHH----HhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 23444433 456999999998756777777776664432 2 2468889999975
No 263
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.81 E-value=0.00021 Score=62.74 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+++.++... |.....+ .+.... .....+ +|. .+.+.||| |-..... + ...
T Consensus 7 ~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~-~~~~~~-~~~~v~l~i~Dt~---G~~~~~~--------~---~~~ 68 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNF-SANVSV-DGNTVNLGLWDTA---GQEDYNR--------L---RPL 68 (176)
T ss_pred ECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeee-EEEEEE-CCEEEEEEEEECC---CCccccc--------c---chh
Confidence 6999999999999999754 7543222 111112 223345 664 67899999 8532211 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||.++.++-|=+.. .-+..+... .+ --.+|||-|+.|..+
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~-~~--~~piilvgnK~Dl~~ 119 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHY-AP--NVPIVLVGTKLDLRD 119 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhcc
Confidence 34688999999999755443331 223333332 22 246788888888643
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.81 E-value=0.0002 Score=72.01 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHCCC---------------------ccc----cc----cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRR---------------------AFK----SK----VGSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~---------------------~F~----s~----~s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|..++|||||.-.||-.- .|. .. ....+.|-........+ +++.+++||
T Consensus 13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liD 91 (447)
T PLN00043 13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TKYYCTVID 91 (447)
T ss_pred EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CCEEEEEEE
Confidence 6999999999998886211 010 00 01134555555555677 899999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CC------HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FS------EEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT------~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |- .+...++. .....+|+.|||+++... |. .+-+..+..+. .+ -..+.||++|
T Consensus 92 tP---Gh-------~df~~~~~----~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~---gi~~iIV~vN 153 (447)
T PLN00043 92 AP---GH-------RDFIKNMI----TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TL---GVKQMICCCN 153 (447)
T ss_pred CC---CH-------HHHHHHHH----hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-Hc---CCCcEEEEEE
Confidence 99 84 33333333 334589999999998631 32 22222222222 22 2467899999
Q ss_pred cCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 127 RGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
+-|....+ -+-+.|-. .-..++.+++..|
T Consensus 154 KmD~~~~~-~~~~~~~~--i~~ei~~~l~~~g 182 (447)
T PLN00043 154 KMDATTPK-YSKARYDE--IVKEVSSYLKKVG 182 (447)
T ss_pred cccCCchh-hhHHHHHH--HHHHHHHHHHHcC
Confidence 99955210 11122211 1235777777665
No 265
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.75 E-value=5.2e-05 Score=73.08 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=63.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.|+|||||++|.|.|.+.-. ...+ .|.++..+-... +|-+|-++|+| |+.....+..--.+++. ..
T Consensus 69 VGfPsvGKStLL~~LTnt~sev---a~y~FTTl~~VPG~l~Y-~ga~IQild~P---gii~gas~g~grG~~vl----sv 137 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKSEV---ADYPFTTLEPVPGMLEY-KGAQIQLLDLP---GIIEGASSGRGRGRQVL----SV 137 (365)
T ss_pred EcCCCccHHHHHHHHhCCCccc---cccCceecccccceEee-cCceEEEEcCc---ccccCcccCCCCcceee----ee
Confidence 7999999999999999976321 1222 355677777778 99999999999 88653322211112221 23
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK 115 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~ 115 (307)
....|+|++|+++.... .....+..-..-.|=
T Consensus 138 ~R~ADlIiiVld~~~~~--~~~~~i~~ELe~~GI 169 (365)
T COG1163 138 ARNADLIIIVLDVFEDP--HHRDIIERELEDVGI 169 (365)
T ss_pred eccCCEEEEEEecCCCh--hHHHHHHHHHHhcCe
Confidence 34689999999875221 114444444444443
No 266
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=0.00026 Score=68.26 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA----KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls----~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
.+..++||||| |....+ .....|+.+....+ +..||-.+||+++... ... +......+ +....
T Consensus 195 ~~~D~ViIDTa---Gr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~---~~~a~~f~--~~~~~ 261 (318)
T PRK10416 195 RGIDVLIIDTA---GRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNA---LSQAKAFH--EAVGL 261 (318)
T ss_pred CCCCEEEEeCC---CCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHH---HHHHHHHH--hhCCC
Confidence 55689999999 876533 34445555544322 3468999999998622 222 22222221 12467
Q ss_pred EEEEEecCCCC
Q 044972 121 MIVVFTRGDEL 131 (307)
Q Consensus 121 ~IVLfT~~D~L 131 (307)
.-|++|+.|.-
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 78899999854
No 267
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.74 E-value=0.00025 Score=68.35 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=72.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCC-CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH----HHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSED-TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE----FVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~sv-T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~----~i~~eI~kc 77 (307)
+|=||+||||++|.|...+.- ....+- |-..+.++....+..+++|-|-| |+-.-...+. ...+-|-+|
T Consensus 202 VG~PNAGKSTLL~als~AKpk---Va~YaFTTL~P~iG~v~yddf~q~tVADiP---GiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKPK---VAHYAFTTLRPHIGTVNYDDFSQITVADIP---GIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecCCCCcHHHHHHHhhccCCc---ccccceeeeccccceeeccccceeEeccCc---cccccccccCcccHHHHHHHHhh
Confidence 789999999999999875532 122232 33445555555344569999999 9864322222 233444443
Q ss_pred HHhcCCCCeEEEEEEeCCCCC---CHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 78 IGMAKDGIHAVLIVFSVRNRF---SEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~Rf---T~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
..++||+++. .+ +.-+ .+.|..=.+++.+. +.+..+||.++.|..+.
T Consensus 276 --------~~l~fVvD~s-~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 276 --------KGLLFVVDLS-GKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred --------ceEEEEEECC-CcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 5788999987 44 4433 23333334566665 45568999999987644
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.70 E-value=1.5e-05 Score=71.61 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
++..+++|||| |... .+.....++.+.+... .|+-++||+++. ...++...+..+.+.|| ..=++
T Consensus 82 ~~~D~vlIDT~---Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~--~~~~~~~~~~~~~~~~~-----~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTA---GRSP---RDEELLEELKKLLEAL--NPDEVHLVLSAT--MGQEDLEQALAFYEAFG-----IDGLI 146 (196)
T ss_dssp TTSSEEEEEE----SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGG--GGGHHHHHHHHHHHHSS-----TCEEE
T ss_pred cCCCEEEEecC---Ccch---hhHHHHHHHHHHhhhc--CCccceEEEecc--cChHHHHHHHHHhhccc-----CceEE
Confidence 34679999999 9864 3455666776655443 688999999985 34455555555555443 34566
Q ss_pred EecCCCCCC
Q 044972 125 FTRGDELED 133 (307)
Q Consensus 125 fT~~D~L~~ 133 (307)
||+-|+-..
T Consensus 147 lTKlDet~~ 155 (196)
T PF00448_consen 147 LTKLDETAR 155 (196)
T ss_dssp EESTTSSST
T ss_pred EEeecCCCC
Confidence 999887543
No 269
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.70 E-value=5.2e-05 Score=72.65 Aligned_cols=62 Identities=15% Similarity=-0.008 Sum_probs=44.0
Q ss_pred CCCCCCcHHHHHHHHH----CC-CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH
Q 044972 3 ACEYIKICTTTGNSIL----GR-RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF 69 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~-~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~ 69 (307)
+|-||+||||++|++- ++ ++..++. ..++|+......... +...|.+|||| |..-++..+.+
T Consensus 149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~-~pGVT~~V~~~iri~-~rp~vy~iDTP---Gil~P~I~~~e 215 (335)
T KOG2485|consen 149 VGVPNVGKSSLINALRNVHLRKKKAARVGA-EPGVTRRVSERIRIS-HRPPVYLIDTP---GILVPSIVDVE 215 (335)
T ss_pred EcCCCCChHHHHHHHHHHHhhhccceeccC-CCCceeeehhheEec-cCCceEEecCC---CcCCCCCCCHH
Confidence 6999999999999884 32 2333332 356887665544344 78899999999 99877765543
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.67 E-value=0.00045 Score=67.12 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=75.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVSKEIVK 76 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~~eI~k 76 (307)
-+|=||+||||++|.|..-+.-.. ..+-|+ ....+...+.++..++|-|-| ||-.-... --+..+-|.+
T Consensus 164 LVG~PNaGKSTlls~vS~AkPKIa---dYpFTTL~PnLGvV~~~~~~sfv~ADIP---GLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 164 LVGLPNAGKSTLLSAVSAAKPKIA---DYPFTTLVPNLGVVRVDGGESFVVADIP---GLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred cccCCCCcHHHHHHHHhhcCCccc---CCccccccCcccEEEecCCCcEEEecCc---ccccccccCCCccHHHHHHHHh
Confidence 379999999999999987553322 223232 334444443367789999999 98643211 1345566666
Q ss_pred HHHhcCCCCeEEEEEEeCCCCCC----HHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCCC
Q 044972 77 CIGMAKDGIHAVLIVFSVRNRFS----EEEGAAIHSLESLFGKKV-FDYMIVVFTRGDELED 133 (307)
Q Consensus 77 cv~ls~pGpha~LLVl~~~~RfT----~ee~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~ 133 (307)
|- ++|+|+++. ... .++-.+|..=.+.|++.. -+..+||+++.|.+..
T Consensus 238 t~--------vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 238 TR--------VLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred hh--------eeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 64 778888886 443 345555555555677764 4678999999996544
No 271
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00014 Score=71.60 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc---CCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV---FDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~---~~~ 120 (307)
.+..+++|||| |.... +..+.+++.. +. ....|+-.+||+++.+. .++ ..++..+....|... ...
T Consensus 214 ~~~DlVLIDTa---G~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~ 283 (374)
T PRK14722 214 RNKHMVLIDTI---GMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDL 283 (374)
T ss_pred cCCCEEEEcCC---CCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCC
Confidence 56799999999 97642 2334445443 21 23345667788887522 222 234455554443221 235
Q ss_pred EEEEEecCCCCC
Q 044972 121 MIVVFTRGDELE 132 (307)
Q Consensus 121 ~IVLfT~~D~L~ 132 (307)
.=++||+-|+-.
T Consensus 284 ~~~I~TKlDEt~ 295 (374)
T PRK14722 284 AGCILTKLDEAS 295 (374)
T ss_pred CEEEEeccccCC
Confidence 677889988754
No 272
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.64 E-value=0.00062 Score=66.12 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHH-HHHhhccccCCeEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHS-LESLFGKKVFDYMIV 123 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~-i~~~FG~~~~~~~IV 123 (307)
.|..++||||+ |+..+.. . |. . -.|++|+|+.. -+..+...++. +.++ + -||
T Consensus 147 ~g~d~viieT~---Gv~qs~~---~----i~---~----~aD~vlvv~~p---~~gd~iq~~k~gi~E~-a------DIi 199 (332)
T PRK09435 147 AGYDVILVETV---GVGQSET---A----VA---G----MVDFFLLLQLP---GAGDELQGIKKGIMEL-A------DLI 199 (332)
T ss_pred cCCCEEEEECC---CCccchh---H----HH---H----hCCEEEEEecC---CchHHHHHHHhhhhhh-h------heE
Confidence 57899999999 9874331 1 21 1 26898888742 23444444333 3222 1 289
Q ss_pred EEecCCCCCC
Q 044972 124 VFTRGDELED 133 (307)
Q Consensus 124 LfT~~D~L~~ 133 (307)
|+|++|.+..
T Consensus 200 VVNKaDl~~~ 209 (332)
T PRK09435 200 VINKADGDNK 209 (332)
T ss_pred Eeehhcccch
Confidence 9999998764
No 273
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.64 E-value=0.0008 Score=59.96 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=61.2
Q ss_pred CCCCCCCcHHHHHH-HHHCCC----ccccccCCCCCCce----eEEE-------EEEEeCCe--EEEEEeCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGN-SILGRR----AFKSKVGSSEDTKT----CEMQ-------RTMLKDGQ--VVNVIDTPAIARLFDS 63 (307)
Q Consensus 2 ~~~~tGsGKSStgN-sILG~~----~F~s~~s~~svT~~----c~~~-------~~~~~~Gr--~v~VIDTP~~~Gl~Dt 63 (307)
.+|.+||||||+++ .+.+.. .|.... ..|.. .... ...+ +|. .+.+.||| |..+.
T Consensus 7 ~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~---~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTa---G~~~~ 79 (195)
T cd01873 7 VVGDNAVGKTRLICARACNKTLTQYQLLATH---VPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTF---GDHDK 79 (195)
T ss_pred EECCCCcCHHHHHHHHHhCCCcccccCcccc---CCceecccceeEEeeeccccceee-CCEEEEEEEEeCC---CChhh
Confidence 37999999999997 444332 232221 11221 1111 1134 554 67899999 87431
Q ss_pred CcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 64 SADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 64 ~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
+. .....+.|+||||+++.++-|-+.. .-+..+.... + --.+|||-|+.|..
T Consensus 80 ----------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 133 (195)
T cd01873 80 ----------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLR 133 (195)
T ss_pred ----------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcc
Confidence 11 1356899999999998755443332 1233344332 2 23688899998853
No 274
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00014 Score=72.38 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=45.7
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+..+++|||| |-... +.....++.+.+.. ..||.++||+++. ....+ +..+.+.|.. ....=|+|
T Consensus 320 ~~DvVLIDTa---GRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsAT--tk~~d---~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 320 RVDYILIDTA---GKNYR---ASETVEEMIETMGQ--VEPDYICLTLSAS--MKSKD---MIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred CCCEEEEeCc---cccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCc--cChHH---HHHHHHHhcC--CCCCEEEE
Confidence 4689999999 87542 24455666555443 3578899999874 22333 1224444544 56677889
Q ss_pred ecCCCCC
Q 044972 126 TRGDELE 132 (307)
Q Consensus 126 T~~D~L~ 132 (307)
|+-|.-.
T Consensus 385 TKLDET~ 391 (436)
T PRK11889 385 TKFDETA 391 (436)
T ss_pred EcccCCC
Confidence 9988654
No 275
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.61 E-value=0.00034 Score=66.35 Aligned_cols=119 Identities=13% Similarity=-0.005 Sum_probs=66.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC-CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC--CCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG-SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF--DSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s-~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~--Dt~~~~~~i~~eI~kcv~ 79 (307)
.|.+|+||||++|.++-.+...-..+ -.+-|+ |..+. . -|...++||.||+ |+- .... ..+..+-....+.
T Consensus 142 ~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq-~in~f-~--v~~~~~~vDlPG~-~~a~y~~~~-~~d~~~~t~~Y~l 215 (320)
T KOG2486|consen 142 YGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ-AINHF-H--VGKSWYEVDLPGY-GRAGYGFEL-PADWDKFTKSYLL 215 (320)
T ss_pred ecCCcccHHHHHhhhhhhhhhhhhcCCCCccce-eeeee-e--ccceEEEEecCCc-ccccCCccC-cchHhHhHHHHHH
Confidence 58999999999999998765432222 223333 33322 2 4778999999942 111 1111 1222222222222
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.-..-..+||||--.- .+-.-|-..+.++-+ .. =.+.+|||..|...+
T Consensus 216 eR~nLv~~FLLvd~sv-~i~~~D~~~i~~~ge----~~-VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 216 ERENLVRVFLLVDASV-PIQPTDNPEIAWLGE----NN-VPMTSVFTKCDKQKK 263 (320)
T ss_pred hhhhhheeeeeeeccC-CCCCCChHHHHHHhh----cC-CCeEEeeehhhhhhh
Confidence 2223356777775433 666666666666543 33 356778999987644
No 276
>PRK02224 chromosome segregation protein; Provisional
Probab=97.61 E-value=0.023 Score=61.33 Aligned_cols=48 Identities=8% Similarity=0.112 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 101 EEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 101 ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+-.+|..++|- +.+.++|+|. . ..+..++.. .|...+.++..--
T Consensus 110 ~~~~~~~~i~~llg~~~~~f~~~~~i~------Q---ge~~~~l~~-~p~~R~~ii~~l~ 159 (880)
T PRK02224 110 GARDVREEVTELLRMDAEAFVNCAYVR------Q---GEVNKLINA-TPSDRQDMIDDLL 159 (880)
T ss_pred ChHHHHHHHHHHHCCCHHHhcceeEee------c---cChHHHHcC-CHHHHHHHHHHHh
Confidence 344566778888884 4666666542 1 246677764 5667777777643
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.61 E-value=4.2e-05 Score=68.23 Aligned_cols=112 Identities=9% Similarity=0.030 Sum_probs=65.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|+.||||+|+.+.+.......+- |.--......+ ..+..+.|||+| |-.-.. . .+...+.
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~~~T~------tS~e~n~~~~~~~~~~~~~~lvD~P---GH~rlr--~-~~~~~~~----- 71 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKTVPTV------TSMENNIAYNVNNSKGKKLRLVDIP---GHPRLR--S-KLLDELK----- 71 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEET---T-HCCC--H-HHHHHHH-----
T ss_pred EcCCCCCHHHHHHHHhcCCcCCee------ccccCCceEEeecCCCCEEEEEECC---CcHHHH--H-HHHHhhh-----
Confidence 699999999999999876433221 21111111111 156799999999 864322 2 2222221
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc----CCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV----FDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~----~~~~IVLfT~~D~L~ 132 (307)
..+.+-+|+||++.. .+..+-+.+.+.|..++-... .-.++|+.++-|...
T Consensus 72 ~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 235688999999976 566666778888888775533 225666677777654
No 278
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.60 E-value=0.00019 Score=64.52 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||+....++.. |.....+.-.+.- .....+ +|. .+.|+||+ |..+.. ..++ .
T Consensus 9 lG~~gVGKSal~~qf~~~~-f~~~y~ptied~y--~k~~~v-~~~~~~l~ilDt~---g~~~~~---------~~~~--~ 70 (196)
T KOG0395|consen 9 LGAGGVGKSALTIQFLTGR-FVEDYDPTIEDSY--RKELTV-DGEVCMLEILDTA---GQEEFS---------AMRD--L 70 (196)
T ss_pred ECCCCCCcchheeeecccc-cccccCCCccccc--eEEEEE-CCEEEEEEEEcCC---CcccCh---------HHHH--H
Confidence 6999999999999888875 6655433322222 223345 554 66799999 832211 1111 2
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+..+.|+||+|.++.++-+=++.. ....|...-|.+ .-.+|+|-++.|...
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER 122 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence 334669999999998666655533 333343332332 246888888888654
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=9.5e-05 Score=73.90 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |....+ .....++...+.. ...|+-++||++.. ....+ +..+...|.. ....=|+
T Consensus 298 ~~~DlVlIDt~---G~~~~d---~~~~~~L~~ll~~-~~~~~~~~LVl~a~--~~~~~---l~~~~~~f~~--~~~~~vI 363 (424)
T PRK05703 298 RDCDVILIDTA---GRSQRD---KRLIEELKALIEF-SGEPIDVYLVLSAT--TKYED---LKDIYKHFSR--LPLDGLI 363 (424)
T ss_pred CCCCEEEEeCC---CCCCCC---HHHHHHHHHHHhc-cCCCCeEEEEEECC--CCHHH---HHHHHHHhCC--CCCCEEE
Confidence 45789999999 985432 3334455554442 22355666778765 23333 3334444442 2234588
Q ss_pred EecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcC
Q 044972 125 FTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDN 166 (307)
Q Consensus 125 fT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnN 166 (307)
||+.|.-.. ...+-.++...|--+..+-+
T Consensus 364 ~TKlDet~~-------------~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 364 FTKLDETSS-------------LGSILSLLIESGLPISYLTN 392 (424)
T ss_pred Eeccccccc-------------ccHHHHHHHHHCCCEEEEeC
Confidence 999987432 11244555555555555544
No 280
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.57 E-value=0.00045 Score=69.86 Aligned_cols=70 Identities=10% Similarity=0.236 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+.+++|||| |- ++..+.+. ....++|++|||+++... ...+.+..+. +...+| .++.||+
T Consensus 116 ~~~i~~IDtP---GH-------~~fi~~m~----~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~iIVv 177 (460)
T PTZ00327 116 KRHVSFVDCP---GH-------DILMATML----NGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHIIIL 177 (460)
T ss_pred cceEeeeeCC---CH-------HHHHHHHH----HHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcEEEE
Confidence 3689999999 83 33334433 334578999999998732 2333333333 333444 3689999
Q ss_pred EecCCCCCC
Q 044972 125 FTRGDELED 133 (307)
Q Consensus 125 fT~~D~L~~ 133 (307)
+|+.|....
T Consensus 178 lNKiDlv~~ 186 (460)
T PTZ00327 178 QNKIDLVKE 186 (460)
T ss_pred EecccccCH
Confidence 999997753
No 281
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00012 Score=73.02 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..+++|||| |.... +..+.+++... . ....|+-.+||+++. ...++ +..+...|.. ....=++
T Consensus 268 ~~~d~VLIDTa---Grsqr---d~~~~~~l~~l-~-~~~~~~~~~LVl~at--~~~~~---~~~~~~~f~~--~~~~~~I 332 (420)
T PRK14721 268 RGKHMVLIDTV---GMSQR---DQMLAEQIAML-S-QCGTQVKHLLLLNAT--SSGDT---LDEVISAYQG--HGIHGCI 332 (420)
T ss_pred cCCCEEEecCC---CCCcc---hHHHHHHHHHH-h-ccCCCceEEEEEcCC--CCHHH---HHHHHHHhcC--CCCCEEE
Confidence 56789999999 98643 34456666542 1 123477788999875 22232 3344445543 5566778
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
||+-|.-.
T Consensus 333 ~TKlDEt~ 340 (420)
T PRK14721 333 ITKVDEAA 340 (420)
T ss_pred EEeeeCCC
Confidence 99988754
No 282
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00016 Score=71.63 Aligned_cols=71 Identities=17% Similarity=0.008 Sum_probs=45.5
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+..++||||| |... .+.....++...... ..||.++||++.+ .+..+ +...+ ..|. .....-++|
T Consensus 285 ~~D~VLIDTA---Gr~~---~d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~-~~f~--~l~i~glI~ 349 (407)
T PRK12726 285 CVDHILIDTV---GRNY---LAEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTIL-PKLA--EIPIDGFII 349 (407)
T ss_pred CCCEEEEECC---CCCc---cCHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHH-HhcC--cCCCCEEEE
Confidence 5699999999 9854 235566677665443 3578888898764 33333 22322 2244 356677889
Q ss_pred ecCCCC
Q 044972 126 TRGDEL 131 (307)
Q Consensus 126 T~~D~L 131 (307)
|+-|.-
T Consensus 350 TKLDET 355 (407)
T PRK12726 350 TKMDET 355 (407)
T ss_pred EcccCC
Confidence 998864
No 283
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00018 Score=76.43 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc-CCeEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV-FDYMIV 123 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~-~~~~IV 123 (307)
.+..+++|||| |....+ ..+.+++..... ...|+-++||++... ..+ .+..+.+.|.... ....=+
T Consensus 262 ~~~D~VLIDTA---GRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~---~l~~i~~~f~~~~~~~i~gl 328 (767)
T PRK14723 262 GDKHLVLIDTV---GMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGD---TLNEVVHAYRHGAGEDVDGC 328 (767)
T ss_pred cCCCEEEEeCC---CCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCC--cHH---HHHHHHHHHhhcccCCCCEE
Confidence 45689999999 976432 446666654322 335788899998752 222 3344444454321 245567
Q ss_pred EEecCCCCC
Q 044972 124 VFTRGDELE 132 (307)
Q Consensus 124 LfT~~D~L~ 132 (307)
+||+-|.-.
T Consensus 329 IlTKLDEt~ 337 (767)
T PRK14723 329 IITKLDEAT 337 (767)
T ss_pred EEeccCCCC
Confidence 799988753
No 284
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.54 E-value=0.00051 Score=76.55 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=72.1
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVS 71 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~ 71 (307)
.|++||||||+++.. |.+ |.... ...+.|+.|.- | -..+-++|||+ |-+-+..+ +...-
T Consensus 117 iG~~gsGKtt~l~~s-gl~-~pl~~~~~~~~~~~~~~t~~c~w----w-f~~~avliDta---G~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 117 IGPPGSGKTTLLQNS-GLK-FPLAERLGAAALRGVGGTRNCDW----W-FTDEAVLIDTA---GRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred ECCCCCchhHHHHhC-CCC-CcCchhhccccccCCCCCcccce----E-ecCCEEEEcCC---CccccCCCcccccHHHH
Confidence 699999999999876 665 42211 11234665643 3 44577899999 97644322 12222
Q ss_pred HHHHHHHHhc--CCCCeEEEEEEeCCCCCC---HHH--------HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 72 KEIVKCIGMA--KDGIHAVLIVFSVRNRFS---EEE--------GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 72 ~eI~kcv~ls--~pGpha~LLVl~~~~RfT---~ee--------~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.+.+.-. ...++.||+++++. .+. +++ +..|..+...||- --.+.||||+.|.+.+
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~-~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLA-DLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhhcC
Confidence 2333333333 34689999999987 443 332 2233445555554 4578899999998855
No 285
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.54 E-value=0.0012 Score=58.16 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=87.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.|..|||||++++.++|.+. +..+.|...+.++..+ .+.++++-|-- |=- .+...-....
T Consensus 22 LGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvG---Gq~-----------~lr~~W~nYf 81 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVG---GQK-----------TLRSYWKNYF 81 (185)
T ss_pred EecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcC---Ccc-----------hhHHHHHHhh
Confidence 48899999999999999983 3345677788899999 99999999999 731 2333333445
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCC-eEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFD-YMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~-~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
...|++++|++...+..=+ .....++.+..++-.. -.++|+.+..++.+. -+.++ |.. --.|.++.+.|..|.
T Consensus 82 estdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~-l~~~~-i~~--~~~L~~l~ks~~~~l 155 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPGA-LSLEE-ISK--ALDLEELAKSHHWRL 155 (185)
T ss_pred hccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCccc-cCHHH-HHH--hhCHHHhccccCceE
Confidence 6789999999875333222 2344556655554332 244445555555542 22222 111 124778878888877
Q ss_pred EEEcC
Q 044972 162 VLFDN 166 (307)
Q Consensus 162 ~~fnN 166 (307)
+-..-
T Consensus 156 ~~cs~ 160 (185)
T KOG0073|consen 156 VKCSA 160 (185)
T ss_pred EEEec
Confidence 65543
No 286
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.53 E-value=0.00023 Score=70.01 Aligned_cols=81 Identities=9% Similarity=-0.107 Sum_probs=53.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~ 65 (307)
++|.|||||||+.|.|.+..+-.+.. ...+|.....+...+|+.| .+.++|.| ||-....
T Consensus 7 ivGlPn~GKSTlfnaLT~~~~~~~a~-ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Dia---Glv~gAs 82 (368)
T TIGR00092 7 IVGLPNVGKSTLFAATTNLLGNEAAN-PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIA---GLVGGAS 82 (368)
T ss_pred EECCCCCChHHHHHHHhCCCccccCC-CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecc---ccccchh
Confidence 58999999999999999987522221 1234555566666665543 78999999 9864321
Q ss_pred C----HHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972 66 D----FEFVSKEIVKCIGMAKDGIHAVLIVFSV 94 (307)
Q Consensus 66 ~----~~~i~~eI~kcv~ls~pGpha~LLVl~~ 94 (307)
. ...+...|. ..|+++.|++.
T Consensus 83 ~g~Glgn~fL~~ir--------~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANIR--------EVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHHH--------hCCEEEEEEeC
Confidence 1 123333333 36899999986
No 287
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0009 Score=66.37 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHH---------------------CCCcccccc--------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSIL---------------------GRRAFKSKV--------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---------------------G~~~F~s~~--------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
.|.+.+||||++-.|| |+.-|.... ...++|-.......+. +-+.+++||
T Consensus 13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~~~tIiD 91 (428)
T COG5256 13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKYNFTIID 91 (428)
T ss_pred EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCceEEEee
Confidence 5999999999886664 333221100 0125565555555566 778999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
+| |-- +.+...| ..+.-.|+-+||++++.. .-.+.+. --.|....| .++.||+.+
T Consensus 92 aP---GHr------dFvknmI-----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG---i~~lIVavN 153 (428)
T COG5256 92 AP---GHR------DFVKNMI-----TGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG---IKQLIVAVN 153 (428)
T ss_pred CC---chH------HHHHHhh-----cchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC---CceEEEEEE
Confidence 99 832 2233332 223346799999998622 1122222 233455566 889999999
Q ss_pred cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
+-|..+-+..-+++-. ..+..|++.||--
T Consensus 154 KMD~v~wde~rf~ei~-----~~v~~l~k~~G~~ 182 (428)
T COG5256 154 KMDLVSWDEERFEEIV-----SEVSKLLKMVGYN 182 (428)
T ss_pred cccccccCHHHHHHHH-----HHHHHHHHHcCCC
Confidence 9998864323333333 2477788888853
No 288
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.45 E-value=0.018 Score=61.79 Aligned_cols=18 Identities=11% Similarity=-0.322 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+||.|+||||+..+|.|.
T Consensus 328 tGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 328 TGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ECCCCCCchHHHHHHHHH
Confidence 599999999999999876
No 289
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.40 E-value=0.0003 Score=65.75 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcC-HHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSAD-FEFVSKEIVKC 77 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~-~~~i~~eI~kc 77 (307)
-+|+..+|||.+.|.|+|. ..|..+.+..++|+..-......+ ++..|+++||. |++|...+ ...-.+-..-+
T Consensus 26 i~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDte---G~~~~~~~~~~~d~~if~Ls 102 (260)
T PF02263_consen 26 IVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTE---GLGDVEQSDEKYDAKIFALS 102 (260)
T ss_dssp EEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEE---CBTTTTCCCCHHCHHHHHHH
T ss_pred eecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecch---hccccccCcccccHHHHHHH
Confidence 4799999999999999986 469888877777765433222111 34689999999 99994322 22212222223
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES 111 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~ 111 (307)
+.+| .++|+-+. + .+++.+...|..+..
T Consensus 103 ~LLS----S~~IyN~~-~-~i~~~~l~~L~~~~~ 130 (260)
T PF02263_consen 103 MLLS----SVLIYNSM-G-NIDEDDLDQLELFTE 130 (260)
T ss_dssp HHH-----SEEEEEEC-S-SSSHHHHHCCHHHHH
T ss_pred HHHh----CceeeCCC-C-ccchhHHHHHHHHHH
Confidence 3343 35655552 3 788887666555433
No 290
>PLN00023 GTP-binding protein; Provisional
Probab=97.40 E-value=0.0026 Score=61.87 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCC---------------eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDG---------------QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~G---------------r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|..||||||+++.+++.. |.... ..|-.|. .....+ ++ ..+.|.||+ |-..
T Consensus 27 LGdsGVGKTSLI~rf~~g~-F~~~~---~pTIG~d~~ik~I~~-~~~~~~~~~ik~d~~k~v~LqIWDTA---GqEr--- 95 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGS-SIARP---PQTIGCTVGVKHITY-GSPGSSSNSIKGDSERDFFVELWDVS---GHER--- 95 (334)
T ss_pred ECCCCCcHHHHHHHHhcCC-ccccc---CCceeeeEEEEEEEE-CCcccccccccccCCceEEEEEEECC---CChh---
Confidence 6999999999999999865 54322 2233332 222333 21 358899999 7421
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhc---------cc-cCCeEEEEEecCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFG---------KK-VFDYMIVVFTRGDELE 132 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG---------~~-~~~~~IVLfT~~D~L~ 132 (307)
...+......+.+++|||+++.++-+-+.. .-+..+....+ +. .--.+|||-|+.|...
T Consensus 96 --------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 --------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred --------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 122333456789999999998754333322 12333333321 00 1235788899988643
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00048 Score=68.22 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |....+ ..-..++.+.+....+ ++-++||+++... ..+. ..+..-|. .....=++
T Consensus 253 ~~~DlVLIDTa---Gr~~~~---~~~l~el~~~l~~~~~-~~e~~LVlsat~~--~~~~---~~~~~~~~--~~~~~~~I 318 (388)
T PRK12723 253 KDFDLVLVDTI---GKSPKD---FMKLAEMKELLNACGR-DAEFHLAVSSTTK--TSDV---KEIFHQFS--PFSYKTVI 318 (388)
T ss_pred CCCCEEEEcCC---CCCccC---HHHHHHHHHHHHhcCC-CCeEEEEEcCCCC--HHHH---HHHHHHhc--CCCCCEEE
Confidence 56799999999 976422 2224555555443333 4567889988633 2222 22223332 24566788
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
||+-|.-.
T Consensus 319 ~TKlDet~ 326 (388)
T PRK12723 319 FTKLDETT 326 (388)
T ss_pred EEeccCCC
Confidence 99988643
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.32 E-value=0.0054 Score=52.90 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |.... +.....++...... ..|+.++||++.. -..+....+..+.+.+| ..-|+
T Consensus 81 ~~~d~viiDt~---g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~--~~~~~~~~~~~~~~~~~-----~~~vi 145 (173)
T cd03115 81 ENFDVVIVDTA---GRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAM--TGQDAVNQAKAFNEALG-----ITGVI 145 (173)
T ss_pred CCCCEEEEECc---ccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECC--CChHHHHHHHHHHhhCC-----CCEEE
Confidence 46789999999 86531 34455555443221 3488999999874 12223333444443333 36677
Q ss_pred EecCCCCCC
Q 044972 125 FTRGDELED 133 (307)
Q Consensus 125 fT~~D~L~~ 133 (307)
+|+.|....
T Consensus 146 ltk~D~~~~ 154 (173)
T cd03115 146 LTKLDGDAR 154 (173)
T ss_pred EECCcCCCC
Confidence 799887654
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.32 E-value=0.0012 Score=61.17 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=77.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l 80 (307)
.|+.||||||.-+.|.+.-. ..+. .-+.|...........+...+.+.|.| |-.+..... ......|
T Consensus 5 mG~~~SGKTSi~~vIF~~~~p~dT~--~L~~T~~ve~~~v~~~~~~~l~iwD~p---Gq~~~~~~~~~~~~~~i------ 73 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKYSPRDTL--RLEPTIDVEKSHVRFLSFLPLNIWDCP---GQDDFMENYFNSQREEI------ 73 (232)
T ss_dssp EESTTSSHHHHHHHHHS---GGGGG--G-----SEEEEEEECTTSCEEEEEEE----SSCSTTHTTHTCCHHHH------
T ss_pred EcCCCCChhhHHHHHHcCCCchhcc--ccCCcCCceEEEEecCCCcEEEEEEcC---CccccccccccccHHHH------
Confidence 49999999999999998743 3322 123455555555444255699999999 876432110 0011112
Q ss_pred cCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC-cccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN-DETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~-~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
..+.+|+++|+++. ..+.+.=......+..+.--.---+.-|++-+.|.+.++ ...+-..+. ..+.+.+...+
T Consensus 74 -f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~----~~i~~~~~~~~ 148 (232)
T PF04670_consen 74 -FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQ----QRIRDELEDLG 148 (232)
T ss_dssp -HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHH----HHHHHHHHHTT
T ss_pred -HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHH----HHHHHHhhhcc
Confidence 24678999999987 344443333344444433223334555666666766542 111111121 23444444433
Q ss_pred -CeEEEEcCCCCch
Q 044972 159 -NRRVLFDNKTKDA 171 (307)
Q Consensus 159 -~R~~~fnNk~~~~ 171 (307)
+++..|--.-+|.
T Consensus 149 ~~~~~~~~TSI~D~ 162 (232)
T PF04670_consen 149 IEDITFFLTSIWDE 162 (232)
T ss_dssp -TSEEEEEE-TTST
T ss_pred ccceEEEeccCcCc
Confidence 3577777666664
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.00066 Score=66.04 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=45.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.|..++||||| |...+ +..+..++.+.+.. -.||.++||+++. +.+ .++.... .|-. +....-|+
T Consensus 221 ~~~DvVLIDTa---Gr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~---~g~--d~~~~a~-~f~~-~~~~~giI 285 (336)
T PRK14974 221 RGIDVVLIDTA---GRMHT---DANLMDELKKIVRV--TKPDLVIFVGDAL---AGN--DAVEQAR-EFNE-AVGIDGVI 285 (336)
T ss_pred CCCCEEEEECC---CccCC---cHHHHHHHHHHHHh--hCCceEEEeeccc---cch--hHHHHHH-HHHh-cCCCCEEE
Confidence 45689999999 98753 35566666554433 2588999999875 222 2233322 2221 34567888
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
||+-|.-.
T Consensus 286 lTKlD~~~ 293 (336)
T PRK14974 286 LTKVDADA 293 (336)
T ss_pred EeeecCCC
Confidence 99988754
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0021 Score=66.18 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIV 123 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IV 123 (307)
.+..++||||| |+... +.....++.. +... .....+||++... +..+. .+++.+. . ....-+
T Consensus 427 ~~~DLVLIDTa---G~s~~---D~~l~eeL~~-L~aa--~~~a~lLVLpAts--s~~Dl~eii~~f~----~--~~~~gv 489 (559)
T PRK12727 427 RDYKLVLIDTA---GMGQR---DRALAAQLNW-LRAA--RQVTSLLVLPANA--HFSDLDEVVRRFA----H--AKPQGV 489 (559)
T ss_pred ccCCEEEecCC---Ccchh---hHHHHHHHHH-HHHh--hcCCcEEEEECCC--ChhHHHHHHHHHH----h--hCCeEE
Confidence 45789999999 98632 2233333332 1111 1335677888752 33332 2333333 2 245668
Q ss_pred EEecCCCC
Q 044972 124 VFTRGDEL 131 (307)
Q Consensus 124 LfT~~D~L 131 (307)
|||+.|.-
T Consensus 490 ILTKlDEt 497 (559)
T PRK12727 490 VLTKLDET 497 (559)
T ss_pred EEecCcCc
Confidence 99999873
No 296
>PRK01889 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.00036 Score=68.14 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=33.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|++|+||||++|+|+|.....++.-+ ...|+ ...-..++.| ..++||| |+.+..
T Consensus 201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~--~~~l~~l~~~--~~l~Dtp---G~~~~~ 261 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTT--HRELHPLPSG--GLLIDTP---GMRELQ 261 (356)
T ss_pred ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhh--hccEEEecCC--CeecCCC---chhhhc
Confidence 699999999999999997654433211 11222 1222333222 3688999 986543
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0024 Score=64.23 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+..++||||| |.... ++.+.+|+....... .||.+|||+++... ..++..... |.+. ....-|||
T Consensus 175 ~~DvVIIDTA---Gr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~gvIl 239 (437)
T PRK00771 175 KADVIIVDTA---GRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIGGIII 239 (437)
T ss_pred cCCEEEEECC---Ccccc---hHHHHHHHHHHHHHh--cccceeEEEecccc-----HHHHHHHHH-HHhc-CCCCEEEE
Confidence 3589999999 87643 466777777654333 57889999987522 244555444 5543 44567788
Q ss_pred ecCCCC
Q 044972 126 TRGDEL 131 (307)
Q Consensus 126 T~~D~L 131 (307)
|+.|.-
T Consensus 240 TKlD~~ 245 (437)
T PRK00771 240 TKLDGT 245 (437)
T ss_pred ecccCC
Confidence 998853
No 298
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.15 E-value=0.0083 Score=56.65 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCC-CC----CCCCCCcCH-HHH------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPA-IA----RLFDSSADF-EFV------ 70 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~-~~----Gl~Dt~~~~-~~i------ 70 (307)
+|+||+||||+++.|.|.-.-. .+...+ +|+.|.++|.+. +. |+....... -++
T Consensus 117 ~g~~g~GKttl~~~l~~~~~~~-------------~G~i~~-~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLARILSTG-------------ISQLGL-RGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred EcCCCCCHHHHHHHHhCccCCC-------------CceEEE-CCEEeecchhHHHHHHHhcccccccccccccccccchH
Confidence 6999999999999999864211 123356 899999888541 11 222211100 001
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchH
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPL 150 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~L 150 (307)
..-+..++. +-.|+++|+== ..+.++.. .+....- -..++|+.||.+ ++++... .+.|
T Consensus 183 ~~~~~~~i~--~~~P~villDE----~~~~e~~~---~l~~~~~---~G~~vI~ttH~~-------~~~~~~~---r~~~ 240 (270)
T TIGR02858 183 AEGMMMLIR--SMSPDVIVVDE----IGREEDVE---ALLEALH---AGVSIIATAHGR-------DVEDLYK---RPVF 240 (270)
T ss_pred HHHHHHHHH--hCCCCEEEEeC----CCcHHHHH---HHHHHHh---CCCEEEEEechh-------HHHHHHh---ChHH
Confidence 112222222 23788877632 22333322 2222221 247889999853 3455554 3579
Q ss_pred HHHHHh-cCCeEEEEcCCC
Q 044972 151 KEILQL-CDNRRVLFDNKT 168 (307)
Q Consensus 151 k~Li~~-Cg~R~~~fnNk~ 168 (307)
+.|++. ...|+++++++.
T Consensus 241 ~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 241 KELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHhcCceEEEEEEecCC
Confidence 999976 468999998863
No 299
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0064 Score=62.43 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=92.7
Q ss_pred CCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCC
Q 044972 4 CEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKD 83 (307)
Q Consensus 4 ~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~p 83 (307)
|..--||+|++..+=+..+.... ..+.|+..--....+|+|+.|++.||| |-- .....-. -.+.
T Consensus 160 GHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTP---GHa-------AF~aMRa----RGA~ 223 (683)
T KOG1145|consen 160 GHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTP---GHA-------AFSAMRA----RGAN 223 (683)
T ss_pred ecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCC---cHH-------HHHHHHh----ccCc
Confidence 66778999999999888776554 357888877777788899999999999 741 1111111 2344
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc-cHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 84 GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE-TLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 84 Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~-sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
..|+++||+.++...-++..++++..+. +--.+||.+|+.|..+.+.+ ...+.+.. . =.++..||-+-
T Consensus 224 vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~~--g----i~~E~~GGdVQ 292 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLSQ--G----IVVEDLGGDVQ 292 (683)
T ss_pred cccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHHc--C----ccHHHcCCcee
Confidence 6789999999887777777777777665 67889999999997654211 12222221 0 12566777665
Q ss_pred EEc
Q 044972 163 LFD 165 (307)
Q Consensus 163 ~fn 165 (307)
+.-
T Consensus 293 vip 295 (683)
T KOG1145|consen 293 VIP 295 (683)
T ss_pred EEE
Confidence 544
No 300
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.13 E-value=0.00061 Score=58.79 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=38.5
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHH-HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIV-KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~-kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
..+++||||| |+.++. .+...+. .-.....-.++.+++|+++. +|-..-.. ...+.+.+..--+||
T Consensus 86 ~~d~I~IEt~---G~~~p~----~~~~~~~~~~~~~~~~~~d~vv~vvDa~-~~~~~~~~-----~~~~~~Qi~~ad~iv 152 (158)
T cd03112 86 AFDRIVIETT---GLADPG----PVAQTFFMDEELAERYLLDGVITLVDAK-HANQHLDQ-----QTEAQSQIAFADRIL 152 (158)
T ss_pred CCCEEEEECC---CcCCHH----HHHHHHhhchhhhcceeeccEEEEEEhh-HhHHHhhc-----cHHHHHHHHHCCEEE
Confidence 4578899999 998743 3333221 11112233578889999876 55332111 122333333345667
Q ss_pred EecCC
Q 044972 125 FTRGD 129 (307)
Q Consensus 125 fT~~D 129 (307)
+|+.|
T Consensus 153 lnk~d 157 (158)
T cd03112 153 LNKTD 157 (158)
T ss_pred Eeccc
Confidence 78876
No 301
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.12 E-value=0.079 Score=58.77 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCCCCCcHHHHHHHHH---CCCccccc---cC----CCCCCceeE-EEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 3 ACEYIKICTTTGNSIL---GRRAFKSK---VG----SSEDTKTCE-MQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~~~F~s~---~s----~~svT~~c~-~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
+|+||+||||++..|. +......+ .+ ....+..|. .....+ +|..+.|.=+| .-.-.. ...
T Consensus 36 ~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~v~~~F~~-~~~~y~~~~~~---~~~~~~-~~~--- 107 (1047)
T PRK10246 36 TGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECLAEVEFEV-KGEAYRAFWSQ---NRARNQ-PDG--- 107 (1047)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceEEEEEEEE-CCeEEEEEeeh---hhcccC-CCC---
Confidence 6999999999998885 22111100 00 011122232 233455 78777777666 211000 000
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCCCCcccHHHhcCCCCCch
Q 044972 72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELEDNDETLEDYLGPECPKP 149 (307)
Q Consensus 72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~ 149 (307)
....+.+.|+.+.-+..+......+...|..+.|=++ +..+|+| .- ..+..||.. .+..
T Consensus 108 ---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v~l-------~Q--G~f~~fl~a-~~~e 168 (1047)
T PRK10246 108 ---------NLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLL-------SQ--GQFAAFLNA-KPKE 168 (1047)
T ss_pred ---------ccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhheee-------cc--ccHHHHHhC-ChHH
Confidence 0112333333322221233333445666777888654 5555554 22 467889986 5667
Q ss_pred HHHHHHhc
Q 044972 150 LKEILQLC 157 (307)
Q Consensus 150 Lk~Li~~C 157 (307)
-++|+++-
T Consensus 169 R~~il~~l 176 (1047)
T PRK10246 169 RAELLEEL 176 (1047)
T ss_pred HHHHHHHH
Confidence 77888763
No 302
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0012 Score=65.01 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE-----EEEEe------C------C-------------------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ-----RTMLK------D------G------------------- 46 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~-----~~~~~------~------G------------------- 46 (307)
+|..-.||||++|.+|+.+.--...++.+.|..-... .+.+| + |
T Consensus 64 ~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~ 143 (532)
T KOG1954|consen 64 VGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPN 143 (532)
T ss_pred EeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCCh
Confidence 6888999999999999987443444444444322210 01110 1 0
Q ss_pred ---eEEEEEeCCCCCCCCCCCcCHHHHHH--HHHHHHHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCe
Q 044972 47 ---QVVNVIDTPAIARLFDSSADFEFVSK--EIVKCIGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 47 ---r~v~VIDTP~~~Gl~Dt~~~~~~i~~--eI~kcv~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
..|+||||| |+.+.... .+.+ .....+.-.+...|.|+|+++.. -.++++-..++..++. --+.
T Consensus 144 ~vLe~vtiVdtP---GILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~Edk 213 (532)
T KOG1954|consen 144 QVLESVTIVDTP---GILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----HEDK 213 (532)
T ss_pred hhhhheeeeccC---cccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----Ccce
Confidence 379999999 98764321 0111 11111222345789999999865 2577777888877774 3567
Q ss_pred EEEEEecCCCCCC
Q 044972 121 MIVVFTRGDELED 133 (307)
Q Consensus 121 ~IVLfT~~D~L~~ 133 (307)
+-||++++|.++.
T Consensus 214 iRVVLNKADqVdt 226 (532)
T KOG1954|consen 214 IRVVLNKADQVDT 226 (532)
T ss_pred eEEEeccccccCH
Confidence 8899999999876
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.03 E-value=0.0003 Score=65.07 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEe
Q 044972 48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFT 126 (307)
Q Consensus 48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT 126 (307)
.+.+|||| |=-... ........|.+.+ ...+.-+++++++.. +++.-..-.-..+..+..- ..--..|+|+|
T Consensus 92 ~y~l~DtP---GQiElf-~~~~~~~~i~~~L--~~~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTP---GQIELF-THSDSGRKIVERL--QKNGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE-----SSHHHH-HHSHHHHHHHHTS--SS----EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCC---CCEEEE-EechhHHHHHHHH--hhhcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 79999999 832110 0112333444433 225667888888875 6655333322222222111 23468999999
Q ss_pred cCCCCCC
Q 044972 127 RGDELED 133 (307)
Q Consensus 127 ~~D~L~~ 133 (307)
+.|.+..
T Consensus 165 K~Dl~~~ 171 (238)
T PF03029_consen 165 KIDLLSK 171 (238)
T ss_dssp -GGGS-H
T ss_pred ccCcccc
Confidence 9999873
No 304
>PRK03918 chromosome segregation protein; Provisional
Probab=97.02 E-value=0.42 Score=51.47 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 105 AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 105 ~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
+-.+|..++|.+.+.++++|. . ..+..++. .|...++++...
T Consensus 113 ~~~~i~~~~~~~~f~~~~~~~-Q--------g~~~~~~~--~~~~r~~~~~~~ 154 (880)
T PRK03918 113 VREWVERLIPYHVFLNAIYIR-Q--------GEIDAILE--SDESREKVVRQI 154 (880)
T ss_pred HHHHHHHhcCHHHhceeEEEe-c--------cchHHHhc--CcHHHHHHHHHH
Confidence 345566678877777776653 1 24666775 367788888764
No 305
>PRK10867 signal recognition particle protein; Provisional
Probab=97.01 E-value=0.0045 Score=62.23 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |-... ++.+..++....... .|+-+|||++.. +.+ .++... ..|.+ ....+-||
T Consensus 182 ~~~DvVIIDTa---Grl~~---d~~lm~eL~~i~~~v--~p~evllVlda~---~gq--~av~~a-~~F~~-~~~i~giI 246 (433)
T PRK10867 182 NGYDVVIVDTA---GRLHI---DEELMDELKAIKAAV--NPDEILLVVDAM---TGQ--DAVNTA-KAFNE-ALGLTGVI 246 (433)
T ss_pred cCCCEEEEeCC---CCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecc---cHH--HHHHHH-HHHHh-hCCCCEEE
Confidence 45689999999 97542 345556665544333 577789999853 432 333333 23333 34556677
Q ss_pred EecCCC
Q 044972 125 FTRGDE 130 (307)
Q Consensus 125 fT~~D~ 130 (307)
+|+-|.
T Consensus 247 lTKlD~ 252 (433)
T PRK10867 247 LTKLDG 252 (433)
T ss_pred EeCccC
Confidence 898774
No 306
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.00 E-value=0.0059 Score=62.77 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCCCCCCCCcCH--HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 47 QVVNVIDTPAIARLFDSSADF--EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~--~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
...++||-| |+.+|-..+ .+....|.+.-.-....|+||+|+++-| .... |+..+.-+..-+.+ .-+.||+|
T Consensus 412 qRMVLVDLP---GvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA-ERSnVTDLVsq~DP-~GrRTIfV 485 (980)
T KOG0447|consen 412 QRMVLVDLP---GVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA-ERSIVTDLVSQMDP-HGRRTIFV 485 (980)
T ss_pred ceeEEecCC---chhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch-hhhhHHHHHHhcCC-CCCeeEEE
Confidence 578999999 987763321 2233334333233346899999999977 5544 45555555554444 46789999
Q ss_pred EecCCCCCCCcccHHHhcCCCCCchHHHHHH
Q 044972 125 FTRGDELEDNDETLEDYLGPECPKPLKEILQ 155 (307)
Q Consensus 125 fT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~ 155 (307)
+|+.|.-+.+ +. .|..++.+|+
T Consensus 486 LTKVDlAEkn-------lA--~PdRI~kIle 507 (980)
T KOG0447|consen 486 LTKVDLAEKN-------VA--SPSRIQQIIE 507 (980)
T ss_pred Eeecchhhhc-------cC--CHHHHHHHHh
Confidence 9998865442 33 2556666664
No 307
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.0014 Score=66.68 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..+++|||+ |....+ ..+...+. .+.... .|+-.+||++.... . ..+..+...|... ...-++
T Consensus 333 ~d~d~VLIDTa---Gr~~~d---~~~~e~~~-~l~~~~-~p~e~~LVLdAt~~--~---~~l~~i~~~f~~~--~~~g~I 397 (484)
T PRK06995 333 RNKHIVLIDTI---GMSQRD---RMVSEQIA-MLHGAG-APVKRLLLLNATSH--G---DTLNEVVQAYRGP--GLAGCI 397 (484)
T ss_pred cCCCeEEeCCC---CcChhh---HHHHHHHH-HHhccC-CCCeeEEEEeCCCc--H---HHHHHHHHHhccC--CCCEEE
Confidence 45689999999 875321 22333332 122121 26668899987522 2 3344455555443 344556
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
||+.|.-.
T Consensus 398 lTKlDet~ 405 (484)
T PRK06995 398 LTKLDEAA 405 (484)
T ss_pred EeCCCCcc
Confidence 89988643
No 308
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.93 E-value=0.02 Score=51.32 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCCCCCcHHHHHHHHHCCCc---ccc--ccCCCC---CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRA---FKS--KVGSSE---DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI 74 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~---F~s--~~s~~s---vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI 74 (307)
.|+.|+||+|+.-.|.-+.. +.. ..+... .|..-..++....++..+.++||| |-- . .+.+
T Consensus 16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtP---Gq~-------R-F~fm 84 (187)
T COG2229 16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTP---GQE-------R-FKFM 84 (187)
T ss_pred EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCC---CcH-------H-HHHH
Confidence 58999999999999987763 211 222222 222233455666244899999999 731 1 1111
Q ss_pred HHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHH
Q 044972 75 VKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEIL 154 (307)
Q Consensus 75 ~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li 154 (307)
+.....|....+++++.....|.++...+..+...+- -+.+|..|+-| |.+. . .++.+++++
T Consensus 85 ---~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~D-L~~a-~---------ppe~i~e~l 146 (187)
T COG2229 85 ---WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQD-LFDA-L---------PPEKIREAL 146 (187)
T ss_pred ---HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccc-cCCC-C---------CHHHHHHHH
Confidence 2233456655555554433555566777777766432 45555555555 4431 1 234556666
Q ss_pred Hhc
Q 044972 155 QLC 157 (307)
Q Consensus 155 ~~C 157 (307)
+.|
T Consensus 147 ~~~ 149 (187)
T COG2229 147 KLE 149 (187)
T ss_pred Hhc
Confidence 665
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.92 E-value=0.0045 Score=63.75 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC--CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS--SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~--~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|..|+||||++=+++..+ |.-..+. ..+|-- . -..|+.-++++|||+ .-.+ +...+.+||.+
T Consensus 15 iGD~G~GKtSLImSL~~ee-f~~~VP~rl~~i~IP---a-dvtPe~vpt~ivD~s---s~~~---~~~~l~~Eirk---- 79 (625)
T KOG1707|consen 15 IGDEGVGKTSLIMSLLEEE-FVDAVPRRLPRILIP---A-DVTPENVPTSIVDTS---SDSD---DRLCLRKEIRK---- 79 (625)
T ss_pred ECCCCccHHHHHHHHHhhh-ccccccccCCccccC---C-ccCcCcCceEEEecc---cccc---hhHHHHHHHhh----
Confidence 6999999999999999876 4322211 111110 1 112356679999999 2211 23456677764
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHH
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLED 140 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~ 140 (307)
.||+.+|-.+++.-|-+- ..-|-.|+..||+...-.+|+|=++.|...+...++++
T Consensus 80 ----A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 80 ----ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred ----cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 689999987762222221 22344578999999999999999999987764344444
No 310
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.91 E-value=0.0076 Score=66.48 Aligned_cols=104 Identities=16% Similarity=0.060 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 8 KICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 8 sGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
++|||++-.|-|.++.... +.+.|++.-.....++.+ ..++|+||| |..+ .
T Consensus 472 ~~KTtLLD~iR~t~v~~~E--aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTP---Ghe~-------F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKE--AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP---GHEA-------F 539 (1049)
T ss_pred cccccHHHHHhCCCccccc--CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECC---CcHH-------H
Confidence 5799999999999885433 346676543333333111 138999999 8421 1
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
... ......++|++|||+++...++.+....+..+... ...+||++|+.|...
T Consensus 540 ~~l----r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSL----RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHH----HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 111 12245678999999999767888888888776652 347999999999764
No 311
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.017 Score=50.09 Aligned_cols=19 Identities=26% Similarity=-0.153 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|.|..
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 312
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.012 Score=50.85 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=18.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
.+|++|+||||+++.|.|...
T Consensus 33 l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 33 IVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EECCCCCCHHHHHHHHHcCCC
Confidence 369999999999999999753
No 313
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.025 Score=50.03 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=53.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEE-eCCCCCCCCCCCcCHHHH-HHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVI-DTPAIARLFDSSADFEFV-SKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VI-DTP~~~Gl~Dt~~~~~~i-~~eI~kcv~l 80 (307)
+|+.|+||||++|.|.|-....+ +...+ +|..+.++ +.| . .|..+- .-.+.+++.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~p~~-------------G~i~~-~g~~i~~~~q~~---~-----LSgGq~qrv~laral~- 87 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQLIPNG-------------DNDEW-DGITPVYKPQYI---D-----LSGGELQRVAIAAALL- 87 (177)
T ss_pred ECCCCChHHHHHHHHHcCCCCCC-------------cEEEE-CCEEEEEEcccC---C-----CCHHHHHHHHHHHHHh-
Confidence 59999999999999999742211 23346 77655443 223 2 333332 223444332
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEec
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
..|.++||==|.. .++...+.. +..+.++- . ....+||+.||
T Consensus 88 --~~p~lllLDEPts-~LD~~~~~~l~~~l~~~~-~-~~~~tiiivsH 130 (177)
T cd03222 88 --RNATFYLFDEPSA-YLDIEQRLNAARAIRRLS-E-EGKKTALVVEH 130 (177)
T ss_pred --cCCCEEEEECCcc-cCCHHHHHHHHHHHHHHH-H-cCCCEEEEEEC
Confidence 3677777755544 666655443 33333321 1 11258888887
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.81 E-value=0.0083 Score=57.05 Aligned_cols=18 Identities=6% Similarity=-0.416 Sum_probs=15.6
Q ss_pred CCCCCCCcHHHHHHHHHC
Q 044972 2 CACEYIKICTTTGNSILG 19 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG 19 (307)
.+|+|||||||+++.+.+
T Consensus 39 i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 39 ITGTPGAGKSTLLEALGM 56 (300)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 369999999999999764
No 315
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.79 E-value=0.023 Score=50.28 Aligned_cols=19 Identities=26% Similarity=0.064 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++|+||||+++.|.|-.
T Consensus 41 ~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 41 MGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 316
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.78 E-value=0.012 Score=51.11 Aligned_cols=20 Identities=20% Similarity=-0.095 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|...
T Consensus 34 ~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 34 IGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCCCHHHHHHHHHhccC
Confidence 69999999999999999753
No 317
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.0031 Score=62.59 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
....+++|||- |-.. .+.....++...+..+ +.++ +.||++++.. .+ .++.+.+-|+. +...=++
T Consensus 280 ~~~d~ILVDTa---Grs~---~D~~~i~el~~~~~~~-~~i~-~~Lvlsat~K--~~---dlkei~~~f~~--~~i~~~I 344 (407)
T COG1419 280 RDCDVILVDTA---GRSQ---YDKEKIEELKELIDVS-HSIE-VYLVLSATTK--YE---DLKEIIKQFSL--FPIDGLI 344 (407)
T ss_pred hcCCEEEEeCC---CCCc---cCHHHHHHHHHHHhcc-ccce-EEEEEecCcc--hH---HHHHHHHHhcc--CCcceeE
Confidence 44699999999 8753 2355666776655444 3344 4567777622 12 24445555554 5566677
Q ss_pred EecCCCC
Q 044972 125 FTRGDEL 131 (307)
Q Consensus 125 fT~~D~L 131 (307)
||+-|+-
T Consensus 345 ~TKlDET 351 (407)
T COG1419 345 FTKLDET 351 (407)
T ss_pred EEccccc
Confidence 8988764
No 318
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.24 Score=54.03 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCCCCCcHHHHHHHHH----CCCc----cccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL----GRRA----FKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE 73 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~~~----F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e 73 (307)
+|+|||||||++.+|. |... |.........++ .+..-.... +|..+.|.=+- +=..+. ++..
T Consensus 31 ~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~~~V~l~F~~-~g~~Y~i~R~~---~r~~~~-~~~~---- 101 (908)
T COG0419 31 VGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGEKSASVELEFEV-NGKKYRIEREF---RRGRGQ-STGS---- 101 (908)
T ss_pred ECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCCccEEEEEEEEE-CCEEEEEEeee---ccccCC-Cccc----
Confidence 7999999999999984 6654 433322222222 233334455 88877766542 111000 0000
Q ss_pred HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972 74 IVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK 151 (307)
Q Consensus 74 I~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk 151 (307)
-. .+..-+.+.+.....+-..+..++|-+ .+.++|+| +- ..+..|+.. .|..-+
T Consensus 102 ------------~~--~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l-------~Q--Ge~~~fl~~-~~~er~ 157 (908)
T COG0419 102 ------------LQ--IIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYL-------PQ--GEFDAFLKS-KPKERK 157 (908)
T ss_pred ------------hh--hcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHhee-------cc--HhHHHHHhc-CcHHHH
Confidence 00 011112244444446778899999976 44444443 22 357888886 555566
Q ss_pred HHHHh
Q 044972 152 EILQL 156 (307)
Q Consensus 152 ~Li~~ 156 (307)
.++..
T Consensus 158 ~il~~ 162 (908)
T COG0419 158 EILDE 162 (908)
T ss_pred HHHHH
Confidence 66665
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.025 Score=49.24 Aligned_cols=20 Identities=15% Similarity=-0.180 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.|+||||+++.|.|-..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
No 320
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.67 E-value=0.003 Score=59.64 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+..+++|||| |-... +....+++...+... .|+-++||+++. ...++. .. +.+.|.. ....=|+|
T Consensus 154 ~~D~ViIDt~---Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~--~~~~d~--~~-~~~~f~~--~~~~~~I~ 218 (270)
T PRK06731 154 RVDYILIDTA---GKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS--MKSKDM--IE-IITNFKD--IHIDGIVF 218 (270)
T ss_pred CCCEEEEECC---CCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc--cCHHHH--HH-HHHHhCC--CCCCEEEE
Confidence 5799999999 87532 245566666654433 567889999875 333332 12 3334554 56677889
Q ss_pred ecCCCCC
Q 044972 126 TRGDELE 132 (307)
Q Consensus 126 T~~D~L~ 132 (307)
|+-|.-.
T Consensus 219 TKlDet~ 225 (270)
T PRK06731 219 TKFDETA 225 (270)
T ss_pred EeecCCC
Confidence 9988654
No 321
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.64 E-value=0.0028 Score=67.71 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=72.8
Q ss_pred CCCCCcHHHHHHHHHCCCccccccC-C-CCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHH
Q 044972 4 CEYIKICTTTGNSILGRRAFKSKVG-S-SEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCI 78 (307)
Q Consensus 4 ~~tGsGKSStgNsILG~~~F~s~~s-~-~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv 78 (307)
|+-+|||||++|.+.|.. |.+-.. . ..+|+..-...... .....+.|+|+- |........ ....+... .+
T Consensus 2 g~qssgkstlln~lf~t~-f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~e---g~d~~er~~~~~fe~~~a-lf 76 (742)
T PF05879_consen 2 GSQSSGKSTLLNHLFGTQ-FDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVE---GTDGRERGEDQDFERKSA-LF 76 (742)
T ss_pred CCCCCcHHHHHHHHHCCC-ccccccccccccchhhHHHhccccccCCCceEEEeCC---CCCchhhccccchHHHHH-HH
Confidence 899999999999999986 655322 1 12332221111111 024588999999 887654322 22333222 22
Q ss_pred HhcCCCCeEEEEE---EeCCCCCCHHHHHHH----HHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 79 GMAKDGIHAVLIV---FSVRNRFSEEEGAAI----HSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 79 ~ls~pGpha~LLV---l~~~~RfT~ee~~~l----~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
.++ =.+++|+- .++| |+...-.-.| +.-..+||.. .-..+.+||.--|...
T Consensus 77 ~la--~s~~~iiN~w~~~iG-~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~ 136 (742)
T PF05879_consen 77 ALA--VSDVLIINMWEHDIG-RYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTG 136 (742)
T ss_pred HHH--hhhheeeehhhhhhh-hhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCC
Confidence 222 24565554 4677 8888765544 4457799876 5677888888877665
No 322
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.63 E-value=0.035 Score=48.23 Aligned_cols=20 Identities=10% Similarity=-0.235 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|...
T Consensus 34 ~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 59999999999999999753
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.60 E-value=0.011 Score=59.42 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |.... ++.+..++...... -.|+.++||++.. |.+ .++... ..|... ...+=|+
T Consensus 181 ~~~DvVIIDTa---Gr~~~---d~~l~~eL~~i~~~--~~p~e~lLVvda~---tgq--~~~~~a-~~f~~~-v~i~giI 245 (428)
T TIGR00959 181 NGFDVVIVDTA---GRLQI---DEELMEELAAIKEI--LNPDEILLVVDAM---TGQ--DAVNTA-KTFNER-LGLTGVV 245 (428)
T ss_pred cCCCEEEEeCC---Ccccc---CHHHHHHHHHHHHh--hCCceEEEEEecc---chH--HHHHHH-HHHHhh-CCCCEEE
Confidence 45689999999 87542 34566666554432 2578889999864 332 233332 233322 3455666
Q ss_pred EecCCC
Q 044972 125 FTRGDE 130 (307)
Q Consensus 125 fT~~D~ 130 (307)
+|+-|.
T Consensus 246 lTKlD~ 251 (428)
T TIGR00959 246 LTKLDG 251 (428)
T ss_pred EeCccC
Confidence 898774
No 324
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.60 E-value=0.011 Score=56.44 Aligned_cols=96 Identities=22% Similarity=0.160 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCCCC---CCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH------HHHHHHHHHhhcccc
Q 044972 47 QVVNVIDTPAIARL---FDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE------GAAIHSLESLFGKKV 117 (307)
Q Consensus 47 r~v~VIDTP~~~Gl---~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee------~~~l~~i~~~FG~~~ 117 (307)
...++|||| |- |--+.+-.-|. -.++..+|-++++|++.. |-|..- ..+-..+.+ .
T Consensus 116 ~~~~liDTP---GQIE~FtWSAsGsIIt------e~lass~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyk-----t 180 (366)
T KOG1532|consen 116 FDYVLIDTP---GQIEAFTWSASGSIIT------ETLASSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYK-----T 180 (366)
T ss_pred cCEEEEcCC---CceEEEEecCCccchH------hhHhhcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHh-----c
Confidence 468999999 84 22222222222 235567899999999875 444332 122222222 3
Q ss_pred CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 118 FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 118 ~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
.-..||||++.|.... .-..+|+.+ =+.+++-+...+.-|
T Consensus 181 klp~ivvfNK~Dv~d~--~fa~eWm~D--fE~FqeAl~~~~~~y 220 (366)
T KOG1532|consen 181 KLPFIVVFNKTDVSDS--EFALEWMTD--FEAFQEALNEAESSY 220 (366)
T ss_pred cCCeEEEEeccccccc--HHHHHHHHH--HHHHHHHHHhhccch
Confidence 5579999999997665 556677754 456788777644444
No 325
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.56 E-value=0.0062 Score=59.15 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH------HHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF------VSKEIV 75 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~------i~~eI~ 75 (307)
-||=||+||||++|.+.+-....-. .. =.|-+...+.+..|+|+.+.+.||- ||.+ +++..- ..++++
T Consensus 183 vVGYTNaGKsTLikaLT~Aal~p~d-rL-FATLDpT~h~a~Lpsg~~vlltDTv---GFis-dLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 183 VVGYTNAGKSTLIKALTKAALYPND-RL-FATLDPTLHSAHLPSGNFVLLTDTV---GFIS-DLPIQLVAAFQATLEEVA 256 (410)
T ss_pred EEeecCccHHHHHHHHHhhhcCccc-hh-heeccchhhhccCCCCcEEEEeech---hhhh-hCcHHHHHHHHHHHHHHh
Confidence 4799999999999999965432111 11 1133444566778899999999999 9974 233222 223332
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc---cCCeEEEEEecCCC
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK---VFDYMIVVFTRGDE 130 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~---~~~~~IVLfT~~D~ 130 (307)
..|++|-|.++..+.-++.+..+-...+-.|-. -+.++|=|-+..|.
T Consensus 257 --------eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 257 --------EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred --------hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 468899999987444444555555555545542 24456666665554
No 326
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.56 E-value=0.67 Score=47.25 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++|+||||++.+|.
T Consensus 33 ~G~NG~GKStll~aI~ 48 (562)
T PHA02562 33 TGKNGAGKSTMLEALT 48 (562)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999998873
No 327
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.021 Score=60.66 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|+-.+|||||.-+||=..-..++... .+.|-+....+..| .| ..|++|||| |--|-.
T Consensus 16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTP---GHVDFt- 90 (697)
T COG0480 16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTP---GHVDFT- 90 (697)
T ss_pred EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCC---CccccH-
Confidence 467899999999999844332222111 12333333446788 86 999999999 977632
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.|+.+.+.. .|+.++|+++......+-...++...+. --..|+++++-|.+..
T Consensus 91 ------~EV~rslrv----lDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 91 ------IEVERSLRV----LDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGA 143 (697)
T ss_pred ------HHHHHHHHh----hcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECcccccc
Confidence 244444333 4677778877546666665565555542 3467888899888764
No 328
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.45 E-value=0.0085 Score=48.21 Aligned_cols=96 Identities=21% Similarity=0.117 Sum_probs=55.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.|+||+|||++...+...- |.++.-||.+ -+.+... .+....+...+..+.
T Consensus 4 ~G~~G~GKT~l~~~la~~l------------------------~~~~~~i~~~---~~~~~~~--~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL------------------------GFPFIEIDGS---ELISSYA--GDSEQKIRDFFKKAK 54 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT------------------------TSEEEEEETT---HHHTSST--THHHHHHHHHHHHHH
T ss_pred ECcCCCCeeHHHHHHHhhc------------------------cccccccccc---ccccccc--ccccccccccccccc
Confidence 5999999999999886431 2245667777 6653322 222233333333321
Q ss_pred C--CCeEEEEEEeCCCCCCHH--------HHHHHHHHHHhhccccC--CeEEEEEecCC
Q 044972 83 D--GIHAVLIVFSVRNRFSEE--------EGAAIHSLESLFGKKVF--DYMIVVFTRGD 129 (307)
Q Consensus 83 p--Gpha~LLVl~~~~RfT~e--------e~~~l~~i~~~FG~~~~--~~~IVLfT~~D 129 (307)
. .| .+|++-.++ .+... ....+..+...|..... ..++|++|--+
T Consensus 55 ~~~~~-~vl~iDe~d-~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 55 KSAKP-CVLFIDEID-KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HTSTS-EEEEEETGG-GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccc-eeeeeccch-hcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 1 24 666666665 44433 46677888888776544 34666666443
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.43 E-value=0.022 Score=49.04 Aligned_cols=19 Identities=16% Similarity=-0.202 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 32 LGENGAGKSTLMKILSGLY 50 (163)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 330
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.014 Score=60.12 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=79.0
Q ss_pred CCCCCCcHHHHHHHHH---CC-----------Ccccccc---------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSIL---GR-----------RAFKSKV---------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~-----------~~F~s~~---------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
.|...+||||+.-.+| |. +.+..+. ...+||........+- .-+.+++||
T Consensus 183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~~~~tliD 261 (603)
T KOG0458|consen 183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KSKIVTLID 261 (603)
T ss_pred EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-CceeEEEec
Confidence 5899999999987764 33 1122111 1236776655555554 778999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC-CCCCH-----HHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR-NRFSE-----EEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~-~RfT~-----ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
+| |.-|- .+ ..|. ...-.|+-+||+++. +-|.. ...+-...+...|| ..+.||++|+
T Consensus 262 aP---GhkdF--i~----nmi~-----g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qlivaiNK 324 (603)
T KOG0458|consen 262 AP---GHKDF--IP----NMIS-----GASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLIVAINK 324 (603)
T ss_pred CC---Ccccc--ch----hhhc-----cccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEEEEeec
Confidence 99 84331 11 1121 122345666777664 23332 12333455666777 8899999999
Q ss_pred CCCCCCCcccHHHhcCCCCCchHHHHH-HhcCC
Q 044972 128 GDELEDNDETLEDYLGPECPKPLKEIL-QLCDN 159 (307)
Q Consensus 128 ~D~L~~~~~sie~yl~~~~~~~Lk~Li-~~Cg~ 159 (307)
-|.+.=....+++ |.+ .|..++ +.||-
T Consensus 325 mD~V~Wsq~RF~e-Ik~----~l~~fL~~~~gf 352 (603)
T KOG0458|consen 325 MDLVSWSQDRFEE-IKN----KLSSFLKESCGF 352 (603)
T ss_pred ccccCccHHHHHH-HHH----HHHHHHHHhcCc
Confidence 9987643233433 222 477777 77775
No 331
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0071 Score=59.45 Aligned_cols=79 Identities=13% Similarity=-0.053 Sum_probs=46.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
-||.|||||||++|+|....+-....+. +|-....+...+| -=-+|.+||.+ ||--..
T Consensus 7 IVGlPNVGKSTlFnAlT~~~a~~aNYPF--~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIA---GLV~GA 81 (372)
T COG0012 7 IVGLPNVGKSTLFNALTKAGAEIANYPF--CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIA---GLVKGA 81 (372)
T ss_pred EecCCCCcHHHHHHHHHcCCccccCCCc--ccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEec---ccCCCc
Confidence 3899999999999999987642222211 2222222222221 11378899999 885321
Q ss_pred -----cCHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972 65 -----ADFEFVSKEIVKCIGMAKDGIHAVLIVFSV 94 (307)
Q Consensus 65 -----~~~~~i~~eI~kcv~ls~pGpha~LLVl~~ 94 (307)
+.+ .....|. ..|||+.|++.
T Consensus 82 s~GeGLGN-kFL~~IR--------evdaI~hVVr~ 107 (372)
T COG0012 82 SKGEGLGN-KFLDNIR--------EVDAIIHVVRC 107 (372)
T ss_pred ccCCCcch-HHHHhhh--------hcCeEEEEEEe
Confidence 222 2223333 47899999876
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.39 E-value=0.083 Score=44.64 Aligned_cols=92 Identities=9% Similarity=-0.001 Sum_probs=51.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHH-HHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSK-EIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~-eI~kcv~l 80 (307)
+|++|+||||++|.|.|-....+ +...+ +|. .+.++ | . .|.....+ .|.+++
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~~-------------G~i~~-~~~~~i~~~--~---~-----lS~G~~~rv~laral-- 85 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELEPDE-------------GIVTW-GSTVKIGYF--E---Q-----LSGGEKMRLALAKLL-- 85 (144)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCc-------------eEEEE-CCeEEEEEE--c---c-----CCHHHHHHHHHHHHH--
Confidence 69999999999999999753211 22344 553 23332 3 2 33333222 344443
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHH-HHHHhhccccCCeEEEEEecC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIH-SLESLFGKKVFDYMIVVFTRG 128 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~-~i~~~FG~~~~~~~IVLfT~~ 128 (307)
...|.++|+==|.. .++...+..+. .+..+ ..+||+.||.
T Consensus 86 -~~~p~illlDEP~~-~LD~~~~~~l~~~l~~~------~~til~~th~ 126 (144)
T cd03221 86 -LENPNLLLLDEPTN-HLDLESIEALEEALKEY------PGTVILVSHD 126 (144)
T ss_pred -hcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHc------CCEEEEEECC
Confidence 23677777654544 56555544433 33332 4588888874
No 333
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.37 E-value=0.058 Score=46.59 Aligned_cols=20 Identities=5% Similarity=-0.212 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.|+||||+++.|+|.-.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 33 TGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCC
Confidence 69999999999999999753
No 334
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.32 E-value=0.028 Score=42.13 Aligned_cols=65 Identities=20% Similarity=0.067 Sum_probs=37.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.|.+|+|||++.+.+.-.=.. .+. ....+ + .++++|+| |..+..... + ....
T Consensus 5 ~g~~G~Gktt~~~~l~~~l~~-~g~-----------~v~~~-~--d~iivD~~---~~~~~~~~~---------~-~~~~ 56 (99)
T cd01983 5 TGKGGVGKTTLAANLAAALAK-RGK-----------RVLLI-D--DYVLIDTP---PGLGLLVLL---------C-LLAL 56 (99)
T ss_pred ECCCCCCHHHHHHHHHHHHHH-CCC-----------eEEEE-C--CEEEEeCC---CCccchhhh---------h-hhhh
Confidence 367799999999888643111 110 11223 3 78999999 776532110 0 1122
Q ss_pred CCCeEEEEEEeCC
Q 044972 83 DGIHAVLIVFSVR 95 (307)
Q Consensus 83 pGpha~LLVl~~~ 95 (307)
..+|.+++|+..+
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 3567777777665
No 335
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.31 E-value=1.1 Score=48.50 Aligned_cols=15 Identities=13% Similarity=-0.144 Sum_probs=13.2
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
.||.++|||++.-+|
T Consensus 333 TGpN~gGKTt~lkti 347 (782)
T PRK00409 333 TGPNTGGKTVTLKTL 347 (782)
T ss_pred ECCCCCCcHHHHHHH
Confidence 699999999998766
No 336
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.28 E-value=0.67 Score=51.39 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=62.0
Q ss_pred CCCCCCcHHHHHHHHH----CCCccccc--cCC----CCCCceeEE-EEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 3 ACEYIKICTTTGNSIL----GRRAFKSK--VGS----SEDTKTCEM-QRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~~~F~s~--~s~----~svT~~c~~-~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
+|++|+||||++..|. |...-.+. ... ...|..|.. -...+ +|..+.|.-.| ......... ...
T Consensus 32 ~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~F~~-~g~~y~~~r~~---~~~~~~~~~-~~~ 106 (1042)
T TIGR00618 32 CGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELEFSL-GTKIYRVHRTL---RCTRSHRKT-EQP 106 (1042)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEEEEE-CCEEEEEEEee---eeeccCCCC-cch
Confidence 6999999999999997 75321100 000 112333432 23456 88888766655 221100000 000
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972 72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK 151 (307)
Q Consensus 72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk 151 (307)
..+ +.+. ++.+ |..+......+-..|..++|=+.-.|+-+++ +.- ..+..|+.. .|...+
T Consensus 107 ~~~---~~~~-~~~~--------g~~~~~~~~~~~~~i~~llGld~~~F~~~~~-----l~Q--g~~~~fl~a-~~~eR~ 166 (1042)
T TIGR00618 107 EQL---YLEQ-KKGR--------GRILAAKKSETEEVIHDLLKLDYKTFTRVVL-----LPQ--GEFAQFLKA-KSKEKK 166 (1042)
T ss_pred hhh---hhhh-cCCC--------CcccccchHHHHHHHHHHhCCCHHHHhhhee-----ecc--cchHHHHhC-CHHHHH
Confidence 000 0110 1111 1011122234556677888866544432322 222 346778875 567778
Q ss_pred HHHHh
Q 044972 152 EILQL 156 (307)
Q Consensus 152 ~Li~~ 156 (307)
+++..
T Consensus 167 ~il~~ 171 (1042)
T TIGR00618 167 ELLMN 171 (1042)
T ss_pred HHHHH
Confidence 88866
No 337
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.26 E-value=0.011 Score=50.21 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=73.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++|.||+|+.|++-|....--+ |.. .+| +.+ -.|||| |.+= .+.. ..+.+.-..
T Consensus 7 vG~~gcGKTtL~q~L~G~~~lykK------TQA-----ve~-~d~--~~IDTP---GEy~---~~~~----~Y~aL~tt~ 62 (148)
T COG4917 7 VGQVGCGKTTLFQSLYGNDTLYKK------TQA-----VEF-NDK--GDIDTP---GEYF---EHPR----WYHALITTL 62 (148)
T ss_pred ecccccCchhHHHHhhcchhhhcc------cce-----eec-cCc--cccCCc---hhhh---hhhH----HHHHHHHHh
Confidence 799999999999999998754211 211 234 222 258999 9752 2222 223344455
Q ss_pred CCCeEEEEEEeCCC---CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 83 DGIHAVLIVFSVRN---RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 83 pGpha~LLVl~~~~---RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+++++|..++. +|.+ .|-.-..+.+|=|.|+.|.-++ ..|+ ..+.++...|
T Consensus 63 ~dadvi~~v~~and~~s~f~p-----------~f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaG- 119 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPP-----------GFLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAG- 119 (148)
T ss_pred hccceeeeeecccCccccCCc-----------ccccccccceEEEEecccccch--HhHH---------HHHHHHHHcC-
Confidence 67899999998762 4432 2222234569999999997654 3332 2345555556
Q ss_pred eEEEEcCCCCc
Q 044972 160 RRVLFDNKTKD 170 (307)
Q Consensus 160 R~~~fnNk~~~ 170 (307)
..++|--..-+
T Consensus 120 a~~IF~~s~~d 130 (148)
T COG4917 120 AEPIFETSAVD 130 (148)
T ss_pred CcceEEEeccC
Confidence 66666544433
No 338
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.26 E-value=0.064 Score=46.80 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 32 AGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
No 339
>PRK01156 chromosome segregation protein; Provisional
Probab=96.25 E-value=2 Score=46.65 Aligned_cols=16 Identities=6% Similarity=-0.197 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++||||||++.+|.
T Consensus 29 ~G~NGsGKSsileAI~ 44 (895)
T PRK01156 29 TGKNGAGKSSIVDAIR 44 (895)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999998874
No 340
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.20 E-value=0.067 Score=47.90 Aligned_cols=19 Identities=16% Similarity=-0.184 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 43 ~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 341
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.16 E-value=0.0031 Score=62.44 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|=|||||||++|+++-+++-.++. ..++|+.-+- +.-+..|.++|.| |+-=+..
T Consensus 258 iG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqe----V~Ldk~i~llDsP---giv~~~~ 312 (435)
T KOG2484|consen 258 IGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQE----VKLDKKIRLLDSP---GIVPPSI 312 (435)
T ss_pred ecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhh----eeccCCceeccCC---ceeecCC
Confidence 6889999999999999988765553 3467765432 2256799999999 9864443
No 342
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.086 Score=58.12 Aligned_cols=21 Identities=24% Similarity=0.039 Sum_probs=17.7
Q ss_pred CCCCCCCcHHHHHHHHH---CCCc
Q 044972 2 CACEYIKICTTTGNSIL---GRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL---G~~~ 22 (307)
-+||.|||||-++-++| |.++
T Consensus 113 IvGPNGSGKSNVIDsmLFVFGfRA 136 (1293)
T KOG0996|consen 113 IVGPNGSGKSNVIDSMLFVFGFRA 136 (1293)
T ss_pred eECCCCCCchHHHHHHHHHhhhhH
Confidence 47999999999999986 6553
No 343
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.11 E-value=1.1 Score=50.92 Aligned_cols=15 Identities=13% Similarity=-0.270 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
+|++|+||||++..|
T Consensus 34 ~G~NGaGKTTil~ai 48 (1311)
T TIGR00606 34 VGPNGAGKTTIIECL 48 (1311)
T ss_pred ECCCCCCHHHHHHHH
Confidence 799999999999998
No 344
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.10 E-value=0.43 Score=52.01 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=40.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s 81 (307)
+|+||+|||++...|..+ ... + .+. ..+ .|.++..+|.. .+........+..+.+...+.. .
T Consensus 205 ~G~pGvGKT~l~~~la~~-i~~-~----~vp-------~~l-~~~~~~~l~l~---~l~ag~~~~g~~e~~lk~~~~~~~ 267 (857)
T PRK10865 205 IGEPGVGKTAIVEGLAQR-IIN-G----EVP-------EGL-KGRRVLALDMG---ALVAGAKYRGEFEERLKGVLNDLA 267 (857)
T ss_pred ECCCCCCHHHHHHHHHHH-hhc-C----CCc-------hhh-CCCEEEEEehh---hhhhccchhhhhHHHHHHHHHHHH
Confidence 699999999999876543 111 1 110 112 56788888888 6653322222233333333322 1
Q ss_pred CCCCeEEEEEEeCC
Q 044972 82 KDGIHAVLIVFSVR 95 (307)
Q Consensus 82 ~pGpha~LLVl~~~ 95 (307)
..+..+|||+-.+.
T Consensus 268 ~~~~~~ILfIDEih 281 (857)
T PRK10865 268 KQEGNVILFIDELH 281 (857)
T ss_pred HcCCCeEEEEecHH
Confidence 22445677775554
No 345
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.026 Score=56.60 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=75.9
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc-ccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS-KVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s-~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.---||||+.-++.|...-.- ...-.+.|.+-....... ....+.+||+| |--| .+ +.+.-.
T Consensus 6 ~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvp---gh~~------~i-----~~miag 70 (447)
T COG3276 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVP---GHPD------FI-----SNLLAG 70 (447)
T ss_pred eeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCC---CcHH------HH-----HHHHhh
Confidence 46667799999999988653211 112235566666666666 55599999999 7532 22 223344
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..|+|..|||++.+..++.+..+.+..+. +|| .++.|||+|+.|..++
T Consensus 71 ~~~~d~alLvV~~deGl~~qtgEhL~iLd-llg---i~~giivltk~D~~d~ 118 (447)
T COG3276 71 LGGIDYALLVVAADEGLMAQTGEHLLILD-LLG---IKNGIIVLTKADRVDE 118 (447)
T ss_pred hcCCceEEEEEeCccCcchhhHHHHHHHH-hcC---CCceEEEEeccccccH
Confidence 56899999999986577777666655443 444 6789999999998864
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.05 E-value=0.003 Score=55.38 Aligned_cols=22 Identities=18% Similarity=-0.099 Sum_probs=19.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFK 24 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~ 24 (307)
+|.|||||||++|+|++.....
T Consensus 133 ~G~~nvGKStliN~l~~~~~~~ 154 (190)
T cd01855 133 VGATNVGKSTLINALLKKDNGK 154 (190)
T ss_pred EcCCCCCHHHHHHHHHHhcccc
Confidence 7999999999999999987644
No 347
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.02 E-value=0.038 Score=43.99 Aligned_cols=20 Identities=15% Similarity=-0.230 Sum_probs=17.4
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
+.|+||+|||++++.|...-
T Consensus 24 i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 24 LYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 47999999999999998753
No 348
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.061 Score=55.45 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHHHCCCccccccC-------------CCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 6 YIKICTTTGNSILGRRAFKSKVG-------------SSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 6 tGsGKSStgNsILG~~~F~s~~s-------------~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
---||||+.-.||-...|.-... -.+.|-..+..+..|.+| .-+++|||| |--|-+
T Consensus 69 VDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP---GHvDFs------ 139 (650)
T KOG0462|consen 69 VDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP---GHVDFS------ 139 (650)
T ss_pred ecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC---Cccccc------
Confidence 34699999999985433322111 125666666666667332 689999999 876643
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchH
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPL 150 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~L 150 (307)
-|+.+.+..| +.+|||++++...-.+....+..-.+ .---+|.|+++.|.-..+ .+ .+.. .+
T Consensus 140 -~EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad---pe-~V~~----q~ 201 (650)
T KOG0462|consen 140 -GEVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD---PE-RVEN----QL 201 (650)
T ss_pred -ceehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC---HH-HHHH----HH
Confidence 2455555444 46778888764554444443333222 233467778888765432 22 2221 46
Q ss_pred HHHHHhcCCeEEEEcCCC
Q 044972 151 KEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 151 k~Li~~Cg~R~~~fnNk~ 168 (307)
+++...|+..+....-+.
T Consensus 202 ~~lF~~~~~~~i~vSAK~ 219 (650)
T KOG0462|consen 202 FELFDIPPAEVIYVSAKT 219 (650)
T ss_pred HHHhcCCccceEEEEecc
Confidence 677777777666665554
No 349
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.95 E-value=0.12 Score=46.45 Aligned_cols=17 Identities=12% Similarity=-0.293 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++|+||||++++|.+
T Consensus 34 ~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 34 CGPTGAGKSTILDAITY 50 (213)
T ss_pred ECCCCCCHHHHHHHhee
Confidence 69999999999999973
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.94 E-value=0.11 Score=45.84 Aligned_cols=17 Identities=18% Similarity=-0.349 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+.|+||||++|.|++
T Consensus 27 ~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 69999999999999985
No 351
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.13 Score=45.33 Aligned_cols=19 Identities=26% Similarity=0.053 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|..
T Consensus 39 ~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 39 MGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999963
No 352
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.89 E-value=0.013 Score=55.32 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=66.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.|=|-|||||+.-.|.+...-.. +..-.|-+|..+.... +|..|-++|-| |+........--.+. +...+
T Consensus 68 IGfPSVGKStlLs~iT~T~SeaA--~yeFTTLtcIpGvi~y-~ga~IQllDLP---GIieGAsqgkGRGRQ----viavA 137 (364)
T KOG1486|consen 68 IGFPSVGKSTLLSKITSTHSEAA--SYEFTTLTCIPGVIHY-NGANIQLLDLP---GIIEGASQGKGRGRQ----VIAVA 137 (364)
T ss_pred ecCCCccHHHHHHHhhcchhhhh--ceeeeEEEeecceEEe-cCceEEEecCc---ccccccccCCCCCce----EEEEe
Confidence 47899999999999988642111 1123467899999899 99999999999 886432111111111 11233
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK 116 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~ 116 (307)
.-.|+||+|+++. =++..+..++.=.+..|-.
T Consensus 138 rtaDlilMvLDat--k~e~qr~~le~ELe~vGiR 169 (364)
T KOG1486|consen 138 RTADLILMVLDAT--KSEDQREILEKELEAVGIR 169 (364)
T ss_pred ecccEEEEEecCC--cchhHHHHHHHHHHHhcee
Confidence 4578999999875 3455566677655555544
No 353
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.08 Score=54.14 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=79.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.|.---|||||+-.|=+.++.... +.+.|++.-.....++ ++..|++|||| |- +.... +
T Consensus 11 mGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTP---GH-------eAFt~-------m 71 (509)
T COG0532 11 MGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTP---GH-------EAFTA-------M 71 (509)
T ss_pred eCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCC---cH-------HHHHH-------H
Confidence 377778999999999888876533 4578887766666663 34899999999 63 11111 1
Q ss_pred cCCC---CeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972 81 AKDG---IHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN 134 (307)
Q Consensus 81 s~pG---pha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~ 134 (307)
-+.| -|.++||+.++.-+-++...++...+. +--.+||..++.|..+.+
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEAN 123 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCCC
Confidence 1223 478899999987888888888888886 466899999999998654
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.035 Score=57.49 Aligned_cols=104 Identities=13% Similarity=-0.001 Sum_probs=62.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCcc-ccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAF-KSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F-~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+||||.||||++.+++.+-.- .......++|- .++ .-|.|+++..| .++...|- ..
T Consensus 74 vvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv----vsg---K~RRiTflEcp------------~Dl~~miD-va-- 131 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV----VSG---KTRRITFLECP------------SDLHQMID-VA-- 131 (1077)
T ss_pred eecCCCCChhHHHHHHHHHHHHhhhhccCCceEE----eec---ceeEEEEEeCh------------HHHHHHHh-HH--
Confidence 4799999999999999865210 10111122221 111 23689999999 22222221 11
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.=.|.+||.++..-.|--+....|..+. +.-+-.++=|.||-|....
T Consensus 132 --KIaDLVlLlIdgnfGfEMETmEFLnil~----~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 132 --KIADLVLLLIDGNFGFEMETMEFLNILI----SHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred --HhhheeEEEeccccCceehHHHHHHHHh----hcCCCceEEEEeecccccC
Confidence 1257888888765456444444444433 4568889999999998876
No 355
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.84 E-value=0.11 Score=46.16 Aligned_cols=45 Identities=18% Similarity=0.008 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHH-HHHHHhhccccCCeEEEEEecCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAI-HSLESLFGKKVFDYMIVVFTRGD 129 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l-~~i~~~FG~~~~~~~IVLfT~~D 129 (307)
..+|.++|+==+.. .++..+...+ ..+...+- ....++|+.||..
T Consensus 106 ~~~p~llllDEp~~-glD~~~~~~i~~~~l~~l~--~~~~~vi~~tH~~ 151 (200)
T cd03280 106 ADPDSLVLLDELGS-GTDPVEGAALAIAILEELL--ERGALVIATTHYG 151 (200)
T ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHHHHHHHHH--hcCCEEEEECCHH
Confidence 45777776654444 6777776655 22332221 1246888899853
No 356
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.74 E-value=0.11 Score=45.32 Aligned_cols=19 Identities=11% Similarity=-0.223 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 31 ~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 357
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.68 E-value=0.063 Score=54.50 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHCCC-ccccccCC-------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHH
Q 044972 7 IKICTTTGNSILGRR-AFKSKVGS-------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK 72 (307)
Q Consensus 7 GsGKSStgNsILG~~-~F~s~~s~-------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~ 72 (307)
--||+|+...+|.+. .|...... .+.|--.......| +|..|+||||| |--|-..
T Consensus 15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTP---GHADFGG------- 83 (603)
T COG1217 15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTP---GHADFGG------- 83 (603)
T ss_pred cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCC---CcCCccc-------
Confidence 469999999999764 35332110 12332222334468 99999999999 7766543
Q ss_pred HHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 73 EIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 73 eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
|+-+.+++ +|.+||++++..-.-++.+-+++.-.+ .--.-|||.++.|....
T Consensus 84 EVERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~-----~gL~PIVVvNKiDrp~A 135 (603)
T COG1217 84 EVERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALA-----LGLKPIVVINKIDRPDA 135 (603)
T ss_pred hhhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHH-----cCCCcEEEEeCCCCCCC
Confidence 33333333 567777777643333444555544333 13356777888876543
No 358
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.67 E-value=0.058 Score=43.33 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCCCCCcHHHHHHHHHC-------CCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILG-------RRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIV 75 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG-------~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~ 75 (307)
.++.|+|||++.=.+-. .++.-...... .+-.++||||| +.++. . ..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--------------~~~D~IIiDtp---p~~~~-----~----~~ 59 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--------------FGDDYVVVDLG---RSLDE-----V----SL 59 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--------------CCCCEEEEeCC---CCcCH-----H----HH
Confidence 57899999997755533 22221111111 22278999999 65531 1 11
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEe
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT 126 (307)
..+ ...|.+|+|+..+ .++-..-. .++.+.. .+..-..++.+|++
T Consensus 60 ~~l----~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~-~~~~~~~~~~lVvN 105 (106)
T cd03111 60 AAL----DQADRVFLVTQQD-LPSIRNAKRLLELLRV-LDYSLPAKIELVLN 105 (106)
T ss_pred HHH----HHcCeEEEEecCC-hHHHHHHHHHHHHHHH-cCCCCcCceEEEec
Confidence 112 2347888888766 55444432 3334443 23221335555554
No 359
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.059 Score=49.64 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=57.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+.+||||++.=-++-.. +. ....|.+..| +.... +...+++||-| |-. .+.. +|.....
T Consensus 44 ~Gl~dSGKT~LF~qL~~gs-~~--~TvtSiepn~--a~~r~-gs~~~~LVD~P---GH~-------rlR~---kl~e~~~ 104 (238)
T KOG0090|consen 44 VGLSDSGKTSLFTQLITGS-HR--GTVTSIEPNE--ATYRL-GSENVTLVDLP---GHS-------RLRR---KLLEYLK 104 (238)
T ss_pred EecCCCCceeeeeehhcCC-cc--Ceeeeeccce--eeEee-cCcceEEEeCC---CcH-------HHHH---HHHHHcc
Confidence 6999999999986665332 11 1111222222 22333 44568999999 842 2222 2222222
Q ss_pred C--CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Q 044972 83 D--GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK 116 (307)
Q Consensus 83 p--Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~ 116 (307)
. ..-+|+||++.- -|..+-+.+-+.+..+.-..
T Consensus 105 ~~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~ 139 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDS 139 (238)
T ss_pred ccccceeEEEEEecc-ccchhhHHHHHHHHHHHHhh
Confidence 1 467899999876 88888888888888877554
No 360
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.61 E-value=0.035 Score=49.25 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++|+||||+++.|.|.
T Consensus 32 ~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 32 MGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999997
No 361
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.60 E-value=0.09 Score=46.71 Aligned_cols=18 Identities=17% Similarity=-0.272 Sum_probs=16.1
Q ss_pred CCCCCCCcHHHHHHHHHC
Q 044972 2 CACEYIKICTTTGNSILG 19 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG 19 (307)
..|+.|+||||+..+|.+
T Consensus 34 l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 34 ITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EECCCCCccHHHHHHHHH
Confidence 369999999999999984
No 362
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.52 E-value=0.045 Score=45.05 Aligned_cols=19 Identities=11% Similarity=-0.380 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|+||+|||++++.|++.-
T Consensus 5 ~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 5 FGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 6999999999999997653
No 363
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.50 E-value=0.18 Score=42.24 Aligned_cols=98 Identities=18% Similarity=0.092 Sum_probs=53.2
Q ss_pred CCCCCCCcHHHHHHHHH------CCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSIL------GRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIV 75 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL------G~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~ 75 (307)
+.|..|+|||++.=.+. |..+-....... ...+ + ..++||||| +..+. .. ..+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~---------~~~~-~-yd~VIiD~p---~~~~~-----~~-~~~- 63 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLG---------LANL-D-YDYIIIDTG---AGISD-----NV-LDF- 63 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC---------CCCC-C-CCEEEEECC---CCCCH-----HH-HHH-
Confidence 57899999999864442 222211111110 0111 1 588999999 64431 11 112
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
+. ..|.+|+|+..+ ..+-.. ..+++.+.... ...++.+|+++.+.
T Consensus 64 --l~----~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~ 109 (139)
T cd02038 64 --FL----AADEVIVVTTPE-PTSITDAYALIKKLAKQL---RVLNFRVVVNRAES 109 (139)
T ss_pred --HH----hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc---CCCCEEEEEeCCCC
Confidence 22 247888888776 554433 34455554432 24467788998753
No 364
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.49 E-value=0.0073 Score=63.68 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=50.3
Q ss_pred eEEEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHhcCCCCeEEEEEE-eCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972 47 QVVNVIDTPAIARLFDSS--ADFEFVSKEIVKCIGMAKDGIHAVLIVF-SVRNRFSEEEGAAIHSLESLFGKKVFDYMIV 123 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~--~~~~~i~~eI~kcv~ls~pGpha~LLVl-~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV 123 (307)
-.+++||.| |+.+.- ..++++..+|..-+......|+.++|++ ++...+... .+++..+++ +.-...|+-
T Consensus 132 ~~lTLvDlP---G~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats--~alkiarev--Dp~g~RTig 204 (657)
T KOG0446|consen 132 ANLTLVDLP---GLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS--PALVVAREV--DPGGSRTLE 204 (657)
T ss_pred chhhhcCCC---CCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcC--HHHHHHHhh--CCCccchhH
Confidence 367899999 997653 3456777777776666666777766655 443222222 233333432 123568999
Q ss_pred EEecCCCCCC
Q 044972 124 VFTRGDELED 133 (307)
Q Consensus 124 LfT~~D~L~~ 133 (307)
|.|++|..+.
T Consensus 205 vitK~Dlmdk 214 (657)
T KOG0446|consen 205 VITKFDFMDK 214 (657)
T ss_pred HhhhHHhhhc
Confidence 9999987754
No 365
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.073 Score=54.99 Aligned_cols=20 Identities=25% Similarity=-0.090 Sum_probs=18.4
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+.|.|+|.-.
T Consensus 353 vG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCC
Confidence 79999999999999999754
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.23 Score=42.10 Aligned_cols=19 Identities=16% Similarity=-0.186 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 31 ~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 31 VGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 367
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.39 E-value=0.055 Score=55.51 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC------------eEEEEEe-CCCCCCCCC-------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG------------QVVNVID-TPAIARLFD------- 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G------------r~v~VID-TP~~~Gl~D------- 62 (307)
+|++||||||++|.|+|--...++ ...+ || +.|.+|. -| -||+
T Consensus 361 VG~sGsGKSTl~~LL~r~~~~~~G-------------~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~---~LF~~TI~~NI 423 (567)
T COG1132 361 VGPSGSGKSTLIKLLLRLYDPTSG-------------EILI-DGIDIRDISLDSLRKRIGIVSQDP---LLFSGTIRENI 423 (567)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCC-------------eEEE-CCEehhhcCHHHHHHhccEEcccc---eeecccHHHHH
Confidence 799999999999999996433221 1122 33 2334443 33 3443
Q ss_pred ----CCcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 044972 63 ----SSADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLF 113 (307)
Q Consensus 63 ----t~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~F 113 (307)
++.+++++.+....+ +...+.|.|.++= .-|..++.-+++.+..-+.+.
T Consensus 424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHh
Confidence 334555655544433 2222336666543 334589999999988888764
No 368
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=95.36 E-value=0.18 Score=44.14 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.|.|||||||++-. +..+.|.-. ...|... ...+..+ +|. .+-+.||. | .+.-++|..
T Consensus 14 igDsgVGKssLl~r-F~ddtFs~s---YitTiGvDfkirTv~i-~G~~VkLqIwDtA---G--------qErFrtits-- 75 (198)
T KOG0079|consen 14 IGDSGVGKSSLLLR-FADDTFSGS---YITTIGVDFKIRTVDI-NGDRVKLQIWDTA---G--------QERFRTITS-- 75 (198)
T ss_pred ecCCcccHHHHHHH-Hhhcccccc---eEEEeeeeEEEEEeec-CCcEEEEEEeecc---c--------HHHHHHHHH--
Confidence 58999999999853 344445311 1112111 2223334 443 44566666 4 334444443
Q ss_pred HhcCCCCeEEEEEEeCC
Q 044972 79 GMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~ 95 (307)
-...|||++++|-++.
T Consensus 76 -tyyrgthgv~vVYDVT 91 (198)
T KOG0079|consen 76 -TYYRGTHGVIVVYDVT 91 (198)
T ss_pred -HHccCCceEEEEEECc
Confidence 3467999999999875
No 369
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.31 E-value=2.5 Score=46.50 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
+||+|||||+++.+|
T Consensus 29 ~G~NGsGKS~ildAi 43 (1164)
T TIGR02169 29 SGPNGSGKSNIGDAI 43 (1164)
T ss_pred ECCCCCCHHHHHHHH
Confidence 699999999999877
No 370
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.25 E-value=0.32 Score=46.06 Aligned_cols=19 Identities=16% Similarity=-0.337 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|+|--
T Consensus 25 ~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 25 LGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 371
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.20 E-value=0.051 Score=53.99 Aligned_cols=16 Identities=19% Similarity=-0.043 Sum_probs=13.3
Q ss_pred CCCCCCcHHHHH----HHHH
Q 044972 3 ACEYIKICTTTG----NSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStg----NsIL 18 (307)
+|+.+|||||+. |..+
T Consensus 79 vG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 79 VGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred ECCcCcCHHHHHHHHHHHHh
Confidence 699999999976 5555
No 372
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.19 E-value=0.056 Score=56.93 Aligned_cols=19 Identities=16% Similarity=-0.144 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 497 vG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 497 IGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999975
No 373
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.16 E-value=0.41 Score=44.68 Aligned_cols=21 Identities=19% Similarity=-0.143 Sum_probs=18.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
.+|++|+||||+++.|.|.-.
T Consensus 55 liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 55 LVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EECCCCCCHHHHHHHHhCCcC
Confidence 369999999999999999753
No 374
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.10 E-value=0.0085 Score=59.58 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=39.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
.+|=||+||||++||+=.+++-.+.+ ..+.|+.-|..+- =+.|.+||.| |+--++
T Consensus 312 fiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcP---GvVyps 366 (572)
T KOG2423|consen 312 FIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCP---GVVYPS 366 (572)
T ss_pred eecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCC---CccCCC
Confidence 36889999999999999988876643 3456664443322 2589999999 985443
No 375
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=95.08 E-value=0.36 Score=46.45 Aligned_cols=20 Identities=15% Similarity=-0.288 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|-..
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~ 21 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQ 21 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCC
Confidence 69999999999999999753
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.019 Score=53.32 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFK 24 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~ 24 (307)
-||.||||||++++|.|....+
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCce
Confidence 4999999999999999998654
No 377
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.01 E-value=0.14 Score=52.68 Aligned_cols=21 Identities=10% Similarity=-0.331 Sum_probs=18.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
.+|++||||||+++.|+|.-.
T Consensus 346 ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 346 ICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred EECCCCCCHHHHHHHHhcccC
Confidence 479999999999999999753
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.00 E-value=0.29 Score=44.18 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+||.|+||||+++.|.
T Consensus 31 vGpNGaGKSTll~~i~ 46 (212)
T cd03274 31 VGPNGSGKSNVIDSML 46 (212)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999987
No 379
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.34 Score=47.36 Aligned_cols=22 Identities=14% Similarity=-0.281 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFK 24 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~ 24 (307)
+|++|+||||+++.|.|-....
T Consensus 38 lGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 38 LGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred ECCCCCcHHHHHHHHHCCCCCC
Confidence 6999999999999999986543
No 380
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.98 E-value=0.072 Score=54.69 Aligned_cols=19 Identities=11% Similarity=-0.242 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 375 vG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 375 VGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 7999999999999999975
No 381
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.94 E-value=0.017 Score=51.05 Aligned_cols=20 Identities=15% Similarity=-0.085 Sum_probs=17.9
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|++||||||+.+.|.+.-
T Consensus 10 i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999864
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.92 E-value=0.019 Score=48.34 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=32.0
Q ss_pred CCCCCCCcHHHHHHHHHCC--CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 2 CACEYIKICTTTGNSILGR--RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~--~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
.+|+|||||||+.+.|.+. ..|..-. ...|+.. ..+.. +|....+||..
T Consensus 4 i~GpsGsGKstl~~~L~~~~~~~~~~~v--~~tTr~p--~~~e~-~g~~~~~v~~~ 54 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSV--SHTTRKP--RPGEV-DGVDYHFVSKE 54 (137)
T ss_pred EECCCCCCHHHHHHHHHhcCCccceecc--cccccCC--CCCcc-CCceeEEeCHH
Confidence 4799999999999999986 2332211 1123222 12345 88888888866
No 383
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.88 E-value=0.16 Score=52.40 Aligned_cols=19 Identities=11% Similarity=-0.076 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|+|.-
T Consensus 373 vG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 373 VGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 6999999999999999964
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.72 E-value=0.016 Score=50.97 Aligned_cols=18 Identities=22% Similarity=-0.127 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+|||||||++++|+|.
T Consensus 31 ~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 31 SGGTGSGKTTLLNALLAF 48 (186)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.72 E-value=0.22 Score=56.50 Aligned_cols=21 Identities=14% Similarity=-0.086 Sum_probs=18.9
Q ss_pred CCCCCCcHHHHHHHHHCCCcc
Q 044972 3 ACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F 23 (307)
+|++|+||||++.+|||.=.-
T Consensus 553 vG~vGsGKSSLL~AiLGEm~~ 573 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEMPK 573 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCccc
Confidence 799999999999999998543
No 386
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.67 E-value=0.12 Score=53.26 Aligned_cols=19 Identities=21% Similarity=-0.090 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|+|.-
T Consensus 382 vG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 382 VGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999964
No 387
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.65 E-value=0.017 Score=51.60 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=17.2
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|+|||||||++++|++.
T Consensus 6 I~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3799999999999999875
No 388
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.095 Score=58.58 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=72.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccc--cC----CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH-HHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSK--VG----SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV-SKEIV 75 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~--~s----~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i-~~eI~ 75 (307)
+|+||+||||++.. .|.+ |.-. .. ...+|..|. -| -+..-++|||- |=+-+..+..+. ..+=.
T Consensus 131 iG~pgsGKTtal~~-sgl~-Fpl~~~~~~~~~~~~gT~~cd----ww-f~deaVlIDta---Gry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 131 IGPPGSGKTTALLN-SGLQ-FPLAEQMGALGLAGPGTRNCD----WW-FTDEAVLIDTA---GRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ecCCCCCcchHHhc-cccc-CcchhhhccccccCCCCcccC----cc-cccceEEEcCC---cceecccCcchhhHHHHH
Confidence 69999999998742 2322 2110 00 123377775 24 56688999999 866443322221 11211
Q ss_pred ---HHHH--hcCCCCeEEEEEEeCCC--CCCHHHHH----HHHH-HHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhc
Q 044972 76 ---KCIG--MAKDGIHAVLIVFSVRN--RFSEEEGA----AIHS-LESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYL 142 (307)
Q Consensus 76 ---kcv~--ls~pGpha~LLVl~~~~--RfT~ee~~----~l~~-i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl 142 (307)
..+. -....++.|++.+++.. .-+..++. .|+. |+++-+. .+.-.+.|+||+.|.+.+ +++|.
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G----F~efF 276 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG----FEEFF 276 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc----HHHHH
Confidence 1111 12346899999998752 33344431 1222 3333322 356689999999999987 67777
Q ss_pred CC
Q 044972 143 GP 144 (307)
Q Consensus 143 ~~ 144 (307)
..
T Consensus 277 ~~ 278 (1188)
T COG3523 277 GS 278 (1188)
T ss_pred hc
Confidence 64
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.59 E-value=0.26 Score=50.11 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-----------EEEEEe-CCCCCCCCC--------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-----------VVNVID-TPAIARLFD-------- 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-----------~v~VID-TP~~~Gl~D-------- 62 (307)
+|++||||||++|.|+|--.-.+ +...+ +|. .|.+|. .| -||+
T Consensus 367 vG~SGsGKSTLl~lL~g~~~p~~-------------G~I~i-~g~~i~~~~~~lr~~i~~V~Q~~---~lF~~TI~eNI~ 429 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGLLDPLQ-------------GEVTL-DGVSVSSLQDELRRRISVFAQDA---HLFDTTVRDNLR 429 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCC-------------cEEEE-CCEEhhhHHHHHHhheEEEccCc---ccccccHHHHHh
Confidence 79999999999999999642211 12234 553 233333 34 4443
Q ss_pred ---CCcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 63 ---SSADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 63 ---t~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
++.+++++.+-+..+ +..-+.|.|-.+ -.-|..++.-+++.+..-+.++ .+.-|++|
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall----~~~~iliL 494 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALL----ADAPILLL 494 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 233444444332221 111234555543 2234579999999988888874 34455665
No 390
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.57 E-value=0.15 Score=43.35 Aligned_cols=106 Identities=17% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCCCCCcHHHHHHHH------HCCCccccccCCC--CCCce--eEE----EEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSI------LGRRAFKSKVGSS--EDTKT--CEM----QRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsI------LG~~~F~s~~s~~--svT~~--c~~----~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
.+..|+||||+.-.| .|.++-.....+. +.+.. ... ....+..+ .++||||| +-.+.
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-d~viiD~p---~~~~~----- 76 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAG-DYILIDSP---AGIER----- 76 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccC-CEEEEECC---CCCcH-----
Confidence 478999999987544 3555433322221 11110 000 00011022 79999999 65431
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
.. ...+ ...|.+|+|+..+ ..+-... .+++.+.. .-.....||+|+.+.
T Consensus 77 ~~----~~~l----~~ad~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~~iv~N~~~~ 126 (179)
T cd02036 77 GF----ITAI----APADEALLVTTPE-ISSLRDADRVKGLLEA----LGIKVVGVIVNRVRP 126 (179)
T ss_pred HH----HHHH----HhCCcEEEEeCCC-cchHHHHHHHHHHHHH----cCCceEEEEEeCCcc
Confidence 11 1112 1356788888765 4444332 23444443 123567788898764
No 391
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.56 E-value=0.057 Score=47.81 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=18.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
.+|++|+||||+++.|.|-..
T Consensus 36 i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 36 IVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EECCCCCCHHHHHHHHhCcCC
Confidence 369999999999999999753
No 392
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.50 E-value=0.017 Score=47.46 Aligned_cols=21 Identities=10% Similarity=-0.235 Sum_probs=18.8
Q ss_pred CCCCCCcHHHHHHHHHCCCcc
Q 044972 3 ACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F 23 (307)
+|++|+||||+++.|.|....
T Consensus 17 ~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EESTTSSHHHHHHHHTTSSHE
T ss_pred EccCCCccccceeeecccccc
Confidence 699999999999999998654
No 393
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.50 E-value=0.15 Score=53.87 Aligned_cols=19 Identities=5% Similarity=-0.338 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||++|.|+|.-
T Consensus 489 vG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 489 VGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999975
No 394
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.50 E-value=0.016 Score=46.48 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+|||||||+++.|..
T Consensus 5 ~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998854
No 395
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.40 E-value=0.019 Score=49.47 Aligned_cols=50 Identities=12% Similarity=-0.080 Sum_probs=30.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
.+|++||||||+++.|.+...... . ..+.|+.. ...+.. +|..+.+++++
T Consensus 6 l~G~~GsGKsTl~~~L~~~~~~~~-~-~~~~~tr~-~~~g~~-~~~~~~~~~~~ 55 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPNLK-F-SISATTRK-PRPGEV-DGVDYFFVSKE 55 (180)
T ss_pred EECCCCCCHHHHHHHHHccCcccc-c-cccceeeC-CCCCCc-CCcEEEEecHH
Confidence 369999999999999998642211 1 11222211 112345 77777788776
No 396
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.38 E-value=0.19 Score=44.98 Aligned_cols=18 Identities=11% Similarity=-0.210 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+.|+||||++++|.|.
T Consensus 31 tGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 31 TGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred ECCCCCChHHHHHHHHHH
Confidence 699999999999999763
No 397
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.37 E-value=0.24 Score=42.56 Aligned_cols=109 Identities=14% Similarity=-0.022 Sum_probs=57.5
Q ss_pred CCCCCCCcHHHHHHHH------HCCCccccccCCCCCCc-eeEE------------EEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSI------LGRRAFKSKVGSSEDTK-TCEM------------QRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 2 ~~~~tGsGKSStgNsI------LG~~~F~s~~s~~svT~-~c~~------------~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+.+..|+||||+.-.| .|.++..........+. .... ..... ++..++||||| +..+
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~-~~yD~VIiD~p---p~~~ 80 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDW-GELDYLVIDMP---PGTG 80 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhc-CCCCEEEEeCC---CCCc
Confidence 4688999999966433 46666433322222110 0000 00011 46789999999 5432
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE 130 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~ 130 (307)
+..+ .+. .....|.+|+|+..+ .++-.+ ..+++.+.+. -.+..-||+++.+.
T Consensus 81 ----~~~~--~~~-----~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~ 133 (169)
T cd02037 81 ----DEHL--TLA-----QSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYF 133 (169)
T ss_pred ----HHHH--HHH-----hccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcc
Confidence 1111 111 013458899998776 555544 3344444443 23455677887764
No 398
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.81 Score=41.54 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=48.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.|.+|||||.++-....+. |.+.+. .|-... .....+ +++ .|.|.||. |-- --+.|.+.
T Consensus 12 iGd~gVGKSclllrf~~kr-F~~~hd---~TiGvefg~r~~~i-d~k~IKlqiwDta---Gqe--------~frsv~~s- 74 (216)
T KOG0098|consen 12 IGDTGVGKSCLLLRFTDKR-FQPVHD---LTIGVEFGARMVTI-DGKQIKLQIWDTA---GQE--------SFRSVTRS- 74 (216)
T ss_pred ECCCCccHHHHHHHHhccC-cccccc---ceeeeeeceeEEEE-cCceEEEEEEecC---CcH--------HHHHHHHH-
Confidence 5999999999998887764 876543 232222 223355 776 56789999 741 12233332
Q ss_pred HhcCCCCeEEEEEEeCCC
Q 044972 79 GMAKDGIHAVLIVFSVRN 96 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~ 96 (307)
.+.|.-..|||.++++
T Consensus 75 --yYr~a~GalLVydit~ 90 (216)
T KOG0098|consen 75 --YYRGAAGALLVYDITR 90 (216)
T ss_pred --HhccCcceEEEEEccc
Confidence 2457778899999873
No 399
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.36 E-value=0.13 Score=53.14 Aligned_cols=20 Identities=10% Similarity=-0.361 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|+|.-.
T Consensus 367 vG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcC
Confidence 79999999999999999753
No 400
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.34 E-value=0.015 Score=52.60 Aligned_cols=20 Identities=20% Similarity=-0.174 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+.|.|-|-..
T Consensus 31 ~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred ECCCCccHHHHHHHHHhccC
Confidence 69999999999999999653
No 401
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.30 E-value=0.67 Score=48.10 Aligned_cols=19 Identities=21% Similarity=-0.114 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|.|.-
T Consensus 56 iGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 56 IGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 402
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.24 E-value=0.82 Score=40.94 Aligned_cols=20 Identities=15% Similarity=-0.099 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHH----CCCc
Q 044972 3 ACEYIKICTTTGNSIL----GRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~~~ 22 (307)
.|+.|+||||+...|. |...
T Consensus 28 ~G~NGsGKTTLl~ai~~~l~G~~~ 51 (204)
T cd03240 28 VGQNGAGKTTIIEALKYALTGELP 51 (204)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5999999999999983 7653
No 403
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.019 Score=51.61 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=34.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
.||+||||||+...++-...|.... |.|+. ....+++ +|....+|+.-
T Consensus 10 sgPSG~GKsTl~k~L~~~~~l~~SV---S~TTR-~pR~gEv-~G~dY~Fvs~~ 57 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDDKLRFSV---SATTR-KPRPGEV-DGVDYFFVTEE 57 (191)
T ss_pred ECCCCCCHHHHHHHHHhhcCeEEEE---EeccC-CCCCCCc-CCceeEeCCHH
Confidence 5999999999999999887544322 33332 2334678 99998888754
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.16 E-value=1.1 Score=39.29 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHH---HCCCccc
Q 044972 3 ACEYIKICTTTGNSI---LGRRAFK 24 (307)
Q Consensus 3 ~~~tGsGKSStgNsI---LG~~~F~ 24 (307)
+|+.|+|||++.-+| +|.+.|.
T Consensus 28 ~G~NGsGKSnil~Ai~~~~~~~~~~ 52 (178)
T cd03239 28 VGPNGSGKSNIVDAICFVLGGKAAK 52 (178)
T ss_pred ECCCCCCHHHHHHHHHHHcCccccc
Confidence 699999999999988 3444443
No 405
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=94.14 E-value=0.26 Score=56.64 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=30.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
.+|++||||||++++|+|.-...++ ...+ +|.--.|-..| .+|+
T Consensus 457 I~G~~GsGKSTLl~~l~G~~~~~~G-------------~i~~-~g~iayv~Q~~---~l~~ 500 (1490)
T TIGR01271 457 VAGSTGSGKSSLLMMIMGELEPSEG-------------KIKH-SGRISFSPQTS---WIMP 500 (1490)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc-------------eEEE-CCEEEEEeCCC---ccCC
Confidence 3699999999999999997532221 2234 66555666777 5554
No 406
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.057 Score=50.51 Aligned_cols=23 Identities=17% Similarity=-0.084 Sum_probs=20.2
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS 25 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s 25 (307)
+|++||||||+++.|+|-....+
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred EcCCCCCHHHHHHHHhcccCCCC
Confidence 79999999999999999876543
No 407
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.04 E-value=0.63 Score=47.34 Aligned_cols=19 Identities=16% Similarity=-0.249 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 43 iG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 43 LGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 408
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.03 E-value=0.1 Score=51.15 Aligned_cols=18 Identities=22% Similarity=-0.127 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|-|||||+||+|++++.
T Consensus 179 sGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 179 SGGTGSGKTTLLNALSGF 196 (355)
T ss_pred eCCCCCCHHHHHHHHHhc
Confidence 699999999999999985
No 409
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.01 E-value=12 Score=41.59 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=19.1
Q ss_pred CCCCCCCcHHHHHHHH---HCCCccccc
Q 044972 2 CACEYIKICTTTGNSI---LGRRAFKSK 26 (307)
Q Consensus 2 ~~~~tGsGKSStgNsI---LG~~~F~s~ 26 (307)
-+|+.||||||++=.| ||.++..+.
T Consensus 67 I~G~NGSGKSAIltAl~lglG~rAs~tn 94 (1074)
T KOG0250|consen 67 IVGNNGSGKSAILTALTLGLGGRASATN 94 (1074)
T ss_pred eecCCCCcHHHHHHHHHHhhcccccccc
Confidence 3799999999988555 677766544
No 410
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.77 Score=40.03 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCCCCCCcHHHHHHHH-HCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSI-LGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsI-LG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
|.|=+++||+|+.--+ ||+.+-. ..|..-.....++ ..-.++|-|-- |-. .|...-.-
T Consensus 22 mlGLd~aGKTtiLyKLkl~~~~~~------ipTvGFnvetVty-kN~kfNvwdvG---Gqd-----------~iRplWrh 80 (180)
T KOG0071|consen 22 MLGLDAAGKTTILYKLKLGQSVTT------IPTVGFNVETVTY-KNVKFNVWDVG---GQD-----------KIRPLWRH 80 (180)
T ss_pred EEecccCCceehhhHHhcCCCccc------ccccceeEEEEEe-eeeEEeeeecc---Cch-----------hhhHHHHh
Confidence 7899999999877544 3433211 1133334445556 67788888888 632 24444455
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe-EEEEEecCCCCCCC--cccHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY-MIVVFTRGDELEDN--DETLEDYLG 143 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~-~IVLfT~~D~L~~~--~~sie~yl~ 143 (307)
..+|..+++||++...| .. -..+-..+..+.++.-+.. .++|+....++.+. .+.|.+|+.
T Consensus 81 Yy~gtqglIFV~Dsa~~-dr-~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADR-DR-IEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred hccCCceEEEEEeccch-hh-HHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 67999999999986534 22 2223345666777766654 44556666666553 234556653
No 411
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.96 E-value=0.16 Score=53.52 Aligned_cols=20 Identities=10% Similarity=-0.175 Sum_probs=18.1
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|++||||||+++.|+|--
T Consensus 510 IvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 510 LVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999964
No 412
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=93.93 E-value=0.096 Score=51.28 Aligned_cols=21 Identities=14% Similarity=-0.217 Sum_probs=18.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
-||-|||||||+.|+|....+
T Consensus 25 IVGlPNvGKST~fnalT~~~a 45 (391)
T KOG1491|consen 25 IVGLPNVGKSTFFNALTKSKA 45 (391)
T ss_pred EeeCCCCchHHHHHHHhcCCC
Confidence 489999999999999987664
No 413
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.91 E-value=0.036 Score=49.30 Aligned_cols=48 Identities=13% Similarity=-0.045 Sum_probs=33.0
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
+||+||||||+.+.++... .|. .+.+.|+... ..+++ +|....+|+..
T Consensus 10 ~GpsG~GK~tl~~~l~~~~~~~~---~~v~~TTR~~-r~gE~-~G~dY~fvs~~ 58 (186)
T PRK14737 10 SSVAGGGKSTIIQALLEEHPDFL---FSISCTTRAP-RPGDE-EGKTYFFLTIE 58 (186)
T ss_pred ECCCCCCHHHHHHHHHhcCCccc---cccCccCCCC-CCCCC-CCceeEeCCHH
Confidence 6999999999999999764 121 2234454432 34566 88888888666
No 414
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.89 E-value=12 Score=41.05 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHH---HHCCCc
Q 044972 3 ACEYIKICTTTGNS---ILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNs---ILG~~~ 22 (307)
+||+|||||+++.+ +||...
T Consensus 29 ~G~NGsGKS~ll~ai~~~lg~~~ 51 (1179)
T TIGR02168 29 VGPNGCGKSNIVDAIRWVLGEQS 51 (1179)
T ss_pred ECCCCCChhHHHHHHHHHHcCCc
Confidence 79999999999966 677543
No 415
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=93.87 E-value=0.051 Score=49.25 Aligned_cols=112 Identities=20% Similarity=0.097 Sum_probs=62.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
||..++||++++-+..-. .|.....+ .|. +--.....+ + |++|.+ ||+||.. .++..+ + + -++
T Consensus 10 VGDga~GKT~ll~~~t~~-~fp~~yvP-TVF-dnys~~v~V-~dg~~v~L-------~LwDTAG-qedYDr-l-R--pls 73 (198)
T KOG0393|consen 10 VGDGAVGKTCLLISYTTN-AFPEEYVP-TVF-DNYSANVTV-DDGKPVEL-------GLWDTAG-QEDYDR-L-R--PLS 73 (198)
T ss_pred ECCCCcCceEEEEEeccC-cCcccccC-eEE-ccceEEEEe-cCCCEEEE-------eeeecCC-Cccccc-c-c--ccC
Confidence 799999999987544322 55443322 111 111223455 5 776542 4444432 122212 1 1 368
Q ss_pred CCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
+|..|+||+++++.++.|=+.- .-+-.++..+ ---.+|+|.|+.|...+
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDD 124 (198)
T ss_pred CCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhC
Confidence 9999999999999855544431 1222333332 23468999999987643
No 416
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.82 E-value=0.037 Score=43.37 Aligned_cols=18 Identities=11% Similarity=-0.193 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||+|||+++..|++.
T Consensus 8 ~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 8 VGPPGSGKTTLARALARE 25 (148)
T ss_pred ECCCCCcHHHHHHHHHhc
Confidence 699999999999999875
No 417
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.78 E-value=0.95 Score=44.44 Aligned_cols=20 Identities=20% Similarity=-0.223 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|-..
T Consensus 37 lGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 37 IGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999653
No 418
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.77 E-value=0.16 Score=51.88 Aligned_cols=19 Identities=16% Similarity=-0.317 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|+|.-
T Consensus 364 vG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 364 VGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 6999999999999999975
No 419
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.33 Score=44.58 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCeEE--EEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972 1 SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQVV--NVIDTPAIARLFDSSADFEFVSKEIVK 76 (307)
Q Consensus 1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr~v--~VIDTP~~~Gl~Dt~~~~~~i~~eI~k 76 (307)
+|.|.+|||||-+.-... ++.|.-. +. .|-.+ ......+ +|+.| -+-||. |- |--+
T Consensus 18 VliGDS~VGKsnLlsRft-rnEF~~~--Sk-sTIGvef~t~t~~v-d~k~vkaqIWDTA---GQ------------ERyr 77 (222)
T KOG0087|consen 18 VLIGDSAVGKSNLLSRFT-RNEFSLE--SK-STIGVEFATRTVNV-DGKTVKAQIWDTA---GQ------------ERYR 77 (222)
T ss_pred EEeCCCccchhHHHHHhc-ccccCcc--cc-cceeEEEEeeceee-cCcEEEEeeeccc---ch------------hhhc
Confidence 378999999998886554 4556422 11 13333 3444566 88755 466888 63 2333
Q ss_pred HHH-hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Q 044972 77 CIG-MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK 115 (307)
Q Consensus 77 cv~-ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~ 115 (307)
++. ..+.|.++.|||.++..+-|=+ .+-+||.++-..
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdh 115 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDH 115 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhc
Confidence 333 3457999999999986455444 666777776443
No 420
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.69 E-value=0.27 Score=45.92 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHH----HHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTG----NSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStg----NsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.||||+||++++ +.|+|......... .....|..-... ....+..+.-. +....+.. .+..+++.+..
T Consensus 30 ~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~--~~~~~~~~~~~~--~~~d~lel~~s---~~~~~~i~-~~~vr~~~~~~ 101 (325)
T COG0470 30 YGPPGVGKTTAALALAKELLCENPTGLLPC--GHCRSCKLIPAG--NHPDFLELNPS---DLRKIDII-VEQVRELAEFL 101 (325)
T ss_pred eCCCCCCHHHHHHHHHHHHhCCCcccCCcc--cchhhhhHHhhc--CCCceEEeccc---ccCCCcch-HHHHHHHHHHh
Confidence 699999999987 45555554332211 111222221111 12355556555 44443322 23334444444
Q ss_pred Hhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 79 GMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 79 ~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
... ..|+.-++++-+++ .+|..-..++....+. .--+..+|++|+
T Consensus 102 ~~~~~~~~~kviiidead-~mt~~A~nallk~lEe---p~~~~~~il~~n 147 (325)
T COG0470 102 SESPLEGGYKVVIIDEAD-KLTEDAANALLKTLEE---PPKNTRFILITN 147 (325)
T ss_pred ccCCCCCCceEEEeCcHH-HHhHHHHHHHHHHhcc---CCCCeEEEEEcC
Confidence 333 24778888888898 9999777776666553 234455555554
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.66 E-value=0.039 Score=51.02 Aligned_cols=19 Identities=16% Similarity=-0.233 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+||+||||||+.|.|-|-.
T Consensus 37 ~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 6999999999999887765
No 422
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.039 Score=49.92 Aligned_cols=19 Identities=16% Similarity=-0.214 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||++|.|.|--
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 423
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.62 E-value=0.045 Score=40.63 Aligned_cols=15 Identities=13% Similarity=-0.206 Sum_probs=13.6
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
.|++||||||++..|
T Consensus 29 ~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAI 43 (62)
T ss_pred ECCCCCCHHHHHHHH
Confidence 699999999999776
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.61 E-value=0.033 Score=48.11 Aligned_cols=19 Identities=11% Similarity=-0.298 Sum_probs=16.8
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
++|++||||||+++.|.+.
T Consensus 6 i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999988664
No 425
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=1.1 Score=44.33 Aligned_cols=21 Identities=10% Similarity=-0.295 Sum_probs=18.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
..|++|+||||+++.|.|-..
T Consensus 50 llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 50 LLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred EECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999764
No 426
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.58 E-value=0.048 Score=48.39 Aligned_cols=19 Identities=11% Similarity=-0.295 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 427
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.56 E-value=0.042 Score=48.09 Aligned_cols=19 Identities=11% Similarity=-0.342 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 24 ~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 428
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.52 E-value=0.041 Score=49.08 Aligned_cols=20 Identities=20% Similarity=-0.137 Sum_probs=18.0
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|++|+||||+++.|.|--
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 36999999999999999964
No 429
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.48 E-value=0.044 Score=48.91 Aligned_cols=19 Identities=16% Similarity=-0.228 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|--
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCCCHHHHHHHHhCCc
Confidence 6999999999999999974
No 430
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.47 E-value=0.043 Score=48.81 Aligned_cols=19 Identities=16% Similarity=-0.197 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|.-
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 431
>PLN03232 ABC transporter C family member; Provisional
Probab=93.46 E-value=0.51 Score=54.41 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++||||||+++.|+|.-.
T Consensus 649 vG~sGSGKSTLl~lLlG~~~ 668 (1495)
T PLN03232 649 VGGTGEGKTSLISAMLGELS 668 (1495)
T ss_pred ECCCCCcHHHHHHHHhCCCc
Confidence 79999999999999999754
No 432
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.45 E-value=0.041 Score=49.44 Aligned_cols=19 Identities=5% Similarity=-0.459 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 6999999999999999974
No 433
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.44 E-value=0.043 Score=49.14 Aligned_cols=19 Identities=16% Similarity=-0.251 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 434
>PLN03130 ABC transporter C family member; Provisional
Probab=93.43 E-value=0.25 Score=57.37 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++||||||+++.|+|.-.
T Consensus 649 vG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 649 VGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred ECCCCCCHHHHHHHHHHhhc
Confidence 79999999999999999753
No 435
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=93.42 E-value=0.34 Score=43.05 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=47.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCc--eeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTK--TCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~--~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.|++||||||++-+.... .|.-. .++|- +-......+ +|. .+.+-||. |-- --+.+
T Consensus 17 IGeSGVGKSSLllrFv~~-~fd~~---~~~tIGvDFkvk~m~v-dg~~~KlaiWDTA---GqE------------rFRtL 76 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSN-TFDDL---HPTTIGVDFKVKVMQV-DGKRLKLAIWDTA---GQE------------RFRTL 76 (209)
T ss_pred EccCCccHHHHHHHHHhc-ccCcc---CCceeeeeEEEEEEEE-cCceEEEEEEecc---chH------------hhhcc
Confidence 599999999999877654 36432 23332 233444556 775 78899999 731 11112
Q ss_pred Hh-cCCCCeEEEEEEeCCCC
Q 044972 79 GM-AKDGIHAVLIVFSVRNR 97 (307)
Q Consensus 79 ~l-s~pGpha~LLVl~~~~R 97 (307)
.. .+.|...+++|-++..|
T Consensus 77 TpSyyRgaqGiIlVYDVT~R 96 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSR 96 (209)
T ss_pred CHhHhccCceeEEEEEccch
Confidence 11 24588999999988643
No 436
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.42 E-value=0.046 Score=48.24 Aligned_cols=19 Identities=21% Similarity=-0.331 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 30 ~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.045 Score=49.06 Aligned_cols=20 Identities=15% Similarity=-0.336 Sum_probs=18.0
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|+.||||||+++.|.|--
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999974
No 438
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.39 E-value=0.038 Score=48.68 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 5 ~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999774
No 439
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.046 Score=48.61 Aligned_cols=20 Identities=10% Similarity=-0.363 Sum_probs=18.0
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|++|+||||+++.|.|--
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 36999999999999999964
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.36 E-value=0.046 Score=47.95 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=17.4
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|++||||||+++.|.+..
T Consensus 7 l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 36999999999999997753
No 441
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.33 E-value=0.047 Score=48.78 Aligned_cols=19 Identities=21% Similarity=-0.099 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|-.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999975
No 442
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.31 E-value=0.041 Score=52.03 Aligned_cols=19 Identities=32% Similarity=0.099 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
||++|+||||+|+.|+|-.
T Consensus 45 VGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 45 VGESGCGKSTLGRLILGLE 63 (268)
T ss_pred EecCCCCHHHHHHHHHcCc
Confidence 7999999999999999975
No 443
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=1.4 Score=40.15 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=60.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccc-cccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFK-SKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~-s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.|..|||||-+.-..-+.. |. +-.+.-+| +-...+.++ +|+ .|-|-||. |= +.. ..-..
T Consensus 15 iGds~VGKtCL~~Rf~~~~-f~e~~~sTIGV--Df~~rt~e~-~gk~iKlQIWDTA---GQ-------ERF----rtit~ 76 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDT-FTESYISTIGV--DFKIRTVEL-DGKTIKLQIWDTA---GQ-------ERF----RTITS 76 (205)
T ss_pred ECCCCcChhhhhhhhccCC-cchhhcceeee--EEEEEEeee-cceEEEEEeeecc---cc-------HHH----hhhhH
Confidence 5999999999988776654 43 22221222 233445566 786 57788999 62 111 11123
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCC-eEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFD-YMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~-~~IVLfT~~D~L~ 132 (307)
..+.|.|+||||.++..+-| =..+-.|+.++=..-.-. +.++|=++.|..+
T Consensus 77 syYR~ahGii~vyDiT~~~S--F~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQES--FNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred hhccCCCeEEEEEEcccHHH--hhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 34679999999998862110 112223333321111122 4566666666554
No 444
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.047 Score=49.28 Aligned_cols=21 Identities=14% Similarity=-0.216 Sum_probs=18.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCc
Q 044972 2 CACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~ 22 (307)
.+|++||||||+++.|.|--.
T Consensus 36 l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EECCCCCCHHHHHHHHhCCCC
Confidence 369999999999999999753
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.29 E-value=0.039 Score=45.39 Aligned_cols=19 Identities=11% Similarity=-0.160 Sum_probs=16.3
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|+|||||||++..+...
T Consensus 4 ~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3699999999999998743
No 446
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.29 E-value=0.049 Score=48.64 Aligned_cols=19 Identities=21% Similarity=-0.130 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 447
>PTZ00099 rab6; Provisional
Probab=93.23 E-value=0.96 Score=39.48 Aligned_cols=78 Identities=19% Similarity=0.106 Sum_probs=44.4
Q ss_pred eEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHH
Q 044972 36 CEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR--FSEEEGAAIHSLES 111 (307)
Q Consensus 36 c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~ 111 (307)
+......+ +| ..+.++||| |..... . .......+.|++|||+++.++ |..- ..-+..+..
T Consensus 17 ~~~~~~~~-~~~~v~l~iwDt~---G~e~~~----~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~ 80 (176)
T PTZ00099 17 FLSKTLYL-DEGPVRLQLWDTA---GQERFR----S-------LIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILN 80 (176)
T ss_pred EEEEEEEE-CCEEEEEEEEECC---ChHHhh----h-------ccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 33333445 55 477899999 863211 0 112234689999999998743 3222 122333333
Q ss_pred hhccccCCeEEEEEecCCCC
Q 044972 112 LFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 112 ~FG~~~~~~~IVLfT~~D~L 131 (307)
..++ -..+|||.|+.|..
T Consensus 81 ~~~~--~~piilVgNK~DL~ 98 (176)
T PTZ00099 81 ERGK--DVIIALVGNKTDLG 98 (176)
T ss_pred hcCC--CCeEEEEEECcccc
Confidence 3332 24578899998854
No 448
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.22 E-value=0.04 Score=54.05 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=17.1
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|+||||||||+++|++.
T Consensus 139 I~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 139 ITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3799999999999999874
No 449
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.18 E-value=0.05 Score=48.20 Aligned_cols=19 Identities=16% Similarity=-0.120 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.16 E-value=0.052 Score=50.79 Aligned_cols=22 Identities=14% Similarity=-0.321 Sum_probs=19.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCcc
Q 044972 2 CACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F 23 (307)
-+|++|+||||+.|.|.|-..-
T Consensus 34 ilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EECCCCCCHHHHHHHHhCCCCC
Confidence 3799999999999999997643
No 451
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.15 E-value=0.32 Score=38.08 Aligned_cols=15 Identities=20% Similarity=-0.208 Sum_probs=11.2
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
.+..|+||||+.=.+
T Consensus 6 ~~kgG~Gkst~~~~l 20 (104)
T cd02042 6 NQKGGVGKTTTAVNL 20 (104)
T ss_pred eCCCCcCHHHHHHHH
Confidence 357899999976444
No 452
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.15 E-value=0.055 Score=46.60 Aligned_cols=17 Identities=12% Similarity=-0.240 Sum_probs=15.6
Q ss_pred CCCCCCCcHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSIL 18 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL 18 (307)
.+|+|||||||+++.|.
T Consensus 8 i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 36999999999999997
No 453
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.14 E-value=0.052 Score=48.20 Aligned_cols=19 Identities=11% Similarity=-0.274 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|-.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 454
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.048 Score=52.69 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
||++|||||+|+.+|+|-
T Consensus 37 VGESGsGKS~~~~aim~l 54 (316)
T COG0444 37 VGESGSGKSVLAKAIMGL 54 (316)
T ss_pred EcCCCCCHHHHHHHHHhc
Confidence 799999999999999994
No 455
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.09 E-value=0.18 Score=57.86 Aligned_cols=19 Identities=11% Similarity=-0.225 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
||++||||||+++.|+|--
T Consensus 1200 VG~SGsGKSTl~~LL~r~y 1218 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFY 1218 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999953
No 456
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.053 Score=49.05 Aligned_cols=19 Identities=11% Similarity=-0.286 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999974
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.07 E-value=0.055 Score=48.99 Aligned_cols=19 Identities=11% Similarity=-0.267 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 458
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.07 E-value=0.44 Score=49.04 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=51.8
Q ss_pred CCCCCCcHHHHHHHHH----CCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL----GRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVK 76 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k 76 (307)
.|++|+||||++-.|. .......+.+..++ -.|......- +|. .+.-+|-- +..+.+++..-+..
T Consensus 49 ~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C-~~C~~C~~i~-~~~h~Dv~eidaa-------s~~~vd~Ir~iie~ 119 (507)
T PRK06645 49 TGIRGVGKTTSARIIAKAVNCSALITENTTIKTC-EQCTNCISFN-NHNHPDIIEIDAA-------SKTSVDDIRRIIES 119 (507)
T ss_pred ECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC-CCChHHHHHh-cCCCCcEEEeecc-------CCCCHHHHHHHHHH
Confidence 6999999999996653 22212111111111 1232111111 343 34444432 12233455443333
Q ss_pred HHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 77 CIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 77 cv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
+......|..-++++-.++ .+|.....++ .+.+-+ .-.+++++|.
T Consensus 120 a~~~P~~~~~KVvIIDEa~-~Ls~~a~naL---Lk~LEe-pp~~~vfI~a 164 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVH-MLSKGAFNAL---LKTLEE-PPPHIIFIFA 164 (507)
T ss_pred HHhccccCCcEEEEEEChh-hcCHHHHHHH---HHHHhh-cCCCEEEEEE
Confidence 3223223555666666676 8887655443 333332 3456666664
No 459
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.05 E-value=0.056 Score=47.94 Aligned_cols=20 Identities=10% Similarity=-0.404 Sum_probs=18.1
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|+.|+||||+++.|.|..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 36999999999999999974
No 460
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.05 E-value=1.4 Score=40.23 Aligned_cols=18 Identities=28% Similarity=-0.003 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++|+|||++.+.+++.
T Consensus 49 ~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 49 TGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EcCCCCCHHHHHHHHHHh
Confidence 699999999999999765
No 461
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.04 E-value=0.049 Score=49.61 Aligned_cols=18 Identities=17% Similarity=-0.080 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 5 ~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 5 AGSVAVGKSTTARVLQAL 22 (220)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 699999999999999874
No 462
>PRK13695 putative NTPase; Provisional
Probab=93.03 E-value=0.71 Score=39.85 Aligned_cols=18 Identities=17% Similarity=-0.389 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++|+||||++..|++.
T Consensus 6 tG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 6 TGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988654
No 463
>PTZ00243 ABC transporter; Provisional
Probab=93.00 E-value=0.54 Score=54.44 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=52.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEE-------------eCCCCCCCCCC-----
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVI-------------DTPAIARLFDS----- 63 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VI-------------DTP~~~Gl~Dt----- 63 (307)
.+|+|||||||++|.|+|--.-.+ +...+ ||..+.=+ --| -||+.
T Consensus 1341 IVGrTGSGKSTLl~lLlrl~~p~~-------------G~I~I-DG~di~~i~l~~LR~~I~iVpQdp---~LF~gTIreN 1403 (1560)
T PTZ00243 1341 IVGRTGSGKSTLLLTFMRMVEVCG-------------GEIRV-NGREIGAYGLRELRRQFSMIPQDP---VLFDGTVRQN 1403 (1560)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCC-------------cEEEE-CCEEcccCCHHHHHhcceEECCCC---ccccccHHHH
Confidence 379999999999999999632211 12234 55433222 234 45532
Q ss_pred -----CcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 044972 64 -----SADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFG 114 (307)
Q Consensus 64 -----~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG 114 (307)
..+++++..-+..| +...+.|.|..+ -.-|..++.-+++.+..-+.+..
T Consensus 1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~v--ge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRV--LEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccc--cCCcCcCCHHHHHHHHHHHHHhc
Confidence 22344444433332 111233555443 23345799999999888888753
No 464
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.97 E-value=0.058 Score=47.60 Aligned_cols=19 Identities=16% Similarity=-0.270 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|.|.-
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 465
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=92.95 E-value=0.22 Score=45.01 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccc---cccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFK---SKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~---s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
-|.+|||||||.|.....+-+. .-.++.=+|+.. .+ +++ .+.+-||. |= +. ....
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-----~V-d~~~vtlQiWDTA---GQ-------ER----FqsL 74 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-----QV-DDRSVTLQIWDTA---GQ-------ER----FQSL 74 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-----EE-cCeEEEEEEEecc---cH-------HH----hhhc
Confidence 4899999999999999876332 112222344433 45 666 45578999 62 10 1111
Q ss_pred HHhcCCCCeEEEEEEeCC
Q 044972 78 IGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~ 95 (307)
-...+.|.|..+||.+++
T Consensus 75 g~aFYRgaDcCvlvydv~ 92 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVN 92 (210)
T ss_pred ccceecCCceEEEEeecC
Confidence 124567999999999987
No 466
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.06 Score=47.80 Aligned_cols=19 Identities=32% Similarity=-0.095 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|.-
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 32 LGPNGAGKTTTIRMILGII 50 (210)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 467
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=92.94 E-value=0.63 Score=53.76 Aligned_cols=20 Identities=5% Similarity=-0.178 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++||||||+++.|+|.-.
T Consensus 670 vG~~GsGKSTLl~~l~g~~~ 689 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMD 689 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999743
No 468
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.056 Score=49.40 Aligned_cols=19 Identities=5% Similarity=-0.482 Sum_probs=17.4
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|++||||||++|.|.|-
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 33 LIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 3699999999999999995
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.068 Score=48.02 Aligned_cols=21 Identities=14% Similarity=-0.315 Sum_probs=18.6
Q ss_pred CCCCCCcHHHHHHHHHCCCcc
Q 044972 3 ACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F 23 (307)
+|+.|+||||+++.|.|.-..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred ECCCCCCHHHHHHHHhcCcCC
Confidence 699999999999999997543
No 470
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.93 E-value=0.069 Score=47.35 Aligned_cols=19 Identities=32% Similarity=-0.073 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|-.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999974
No 471
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.92 E-value=0.05 Score=48.53 Aligned_cols=18 Identities=17% Similarity=-0.095 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 12 ~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 12 GGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999874
No 472
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=92.89 E-value=0.38 Score=51.42 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=60.5
Q ss_pred CCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 6 YIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 6 tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
.--||+|++.+++..+...|..-+ .+.|......+... .+..+++||+| |--|-.
T Consensus 18 vdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidsp---ghvdf~------- 86 (887)
T KOG0467|consen 18 VDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSP---GHVDFS------- 86 (887)
T ss_pred ecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCC---Cccchh-------
Confidence 346999999999877654332211 13333333333334 77899999999 876632
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
.|+..+..+| +| |++|| ++-...+.+....++ ..+-+ -..+|+|+++.|.|
T Consensus 87 sevssas~l~-d~--alvlv-dvvegv~~qt~~vlr---q~~~~--~~~~~lvinkidrl 137 (887)
T KOG0467|consen 87 SEVSSASRLS-DG--ALVLV-DVVEGVCSQTYAVLR---QAWIE--GLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhhhc-CC--cEEEE-eeccccchhHHHHHH---HHHHc--cCceEEEEehhhhH
Confidence 3444443343 23 34444 443356666555555 22111 23689999999943
No 473
>PHA02518 ParA-like protein; Provisional
Probab=92.89 E-value=0.3 Score=42.77 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=34.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHh--hccccCCeE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESL--FGKKVFDYM 121 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~--FG~~~~~~~ 121 (307)
++..++||||| |-.+ .+...+ + ...|.+|+++..+ .++-.. ..+++.+..+ +.+ ...+.
T Consensus 75 ~~~d~viiD~p---~~~~------~~~~~~---l----~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 136 (211)
T PHA02518 75 SGYDYVVVDGA---PQDS------ELARAA---L----RIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTD-GLPKF 136 (211)
T ss_pred ccCCEEEEeCC---CCcc------HHHHHH---H----HHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCC-CCceE
Confidence 34589999999 6532 111221 1 2467888887665 444332 2233333332 222 24456
Q ss_pred EEEEecCC
Q 044972 122 IVVFTRGD 129 (307)
Q Consensus 122 IVLfT~~D 129 (307)
.||+++.+
T Consensus 137 ~iv~n~~~ 144 (211)
T PHA02518 137 AFIISRAI 144 (211)
T ss_pred EEEEeccC
Confidence 66777654
No 474
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.88 E-value=0.069 Score=48.42 Aligned_cols=19 Identities=11% Similarity=-0.398 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999974
No 475
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.86 E-value=0.058 Score=48.02 Aligned_cols=19 Identities=21% Similarity=-0.095 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|.|.-
T Consensus 31 ~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 6999999999999999974
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.84 E-value=0.064 Score=39.81 Aligned_cols=18 Identities=6% Similarity=-0.147 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++||||||+++.|...
T Consensus 5 ~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988643
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.82 E-value=0.063 Score=48.28 Aligned_cols=20 Identities=15% Similarity=-0.203 Sum_probs=18.2
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|+.|+||||+++.|.|-.
T Consensus 41 i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 41 LIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 36999999999999999975
No 478
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.80 E-value=0.072 Score=47.92 Aligned_cols=19 Identities=16% Similarity=-0.160 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.|+||||+++.|+|-.
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999975
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.78 E-value=0.074 Score=47.32 Aligned_cols=19 Identities=21% Similarity=-0.261 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 480
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.77 E-value=0.47 Score=47.23 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCCCCCcHHHHHHH----HHCCCccccccCCCCCCceeEEE-EEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNS----ILGRRAFKSKVGSSEDTKTCEMQ-RTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNs----ILG~~~F~s~~s~~svT~~c~~~-~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
.||+|+||++++-. +++.... ..+.+....|... .+.. ..+.+|+.. |. ...-+++. ++.+.
T Consensus 42 ~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~Cg~C~~C~~~~~~~h---pD~~~i~~~---~~---~i~i~~iR-~l~~~ 108 (394)
T PRK07940 42 TGPPGSGRSVAARAFAAALQCTDPD---EPGCGECRACRTVLAGTH---PDVRVVAPE---GL---SIGVDEVR-ELVTI 108 (394)
T ss_pred ECCCCCcHHHHHHHHHHHhCCCCCC---CCCCCCCHHHHHHhcCCC---CCEEEeccc---cc---cCCHHHHH-HHHHH
Confidence 59999999998854 4444321 1111222233221 1111 246666655 52 23445543 55555
Q ss_pred HHhcC-CCCeEEEEEEeCCCCCCHHHHHHH
Q 044972 78 IGMAK-DGIHAVLIVFSVRNRFSEEEGAAI 106 (307)
Q Consensus 78 v~ls~-pGpha~LLVl~~~~RfT~ee~~~l 106 (307)
+...+ .|..-|+++-.++ +++..-.+++
T Consensus 109 ~~~~p~~~~~kViiIDead-~m~~~aanaL 137 (394)
T PRK07940 109 AARRPSTGRWRIVVIEDAD-RLTERAANAL 137 (394)
T ss_pred HHhCcccCCcEEEEEechh-hcCHHHHHHH
Confidence 54432 3666677888888 9998876543
No 481
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.06 Score=49.26 Aligned_cols=18 Identities=6% Similarity=-0.457 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|-
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999995
No 482
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.061 Score=49.13 Aligned_cols=19 Identities=5% Similarity=-0.466 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 35 ~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 6999999999999999974
No 483
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.74 E-value=0.044 Score=44.28 Aligned_cols=20 Identities=10% Similarity=-0.290 Sum_probs=16.7
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
+.|++|+|||++++.++..-
T Consensus 9 i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999998753
No 484
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.71 E-value=0.065 Score=48.96 Aligned_cols=19 Identities=16% Similarity=-0.335 Sum_probs=17.3
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|++|+||||+++.|.|-
T Consensus 36 i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 36 LIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 3799999999999999985
No 485
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.67 E-value=0.06 Score=43.00 Aligned_cols=18 Identities=17% Similarity=-0.127 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|.|||||||+++.|.-.
T Consensus 4 ~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999887543
No 486
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.66 E-value=0.078 Score=48.19 Aligned_cols=20 Identities=0% Similarity=-0.468 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|...
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
No 487
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.65 E-value=1.4 Score=45.39 Aligned_cols=19 Identities=11% Similarity=-0.298 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|.-
T Consensus 39 iG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 39 LGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 488
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.64 E-value=0.6 Score=46.18 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=53.4
Q ss_pred CCCCCCcHHHHH----HHHHCCCccccc------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHH
Q 044972 3 ACEYIKICTTTG----NSILGRRAFKSK------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK 72 (307)
Q Consensus 3 ~~~tGsGKSStg----NsILG~~~F~s~------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~ 72 (307)
.||+|+||+|++ +.|++....... ..+.+....|.... .. ..-.+.++|.. +. ..-+++.
T Consensus 44 ~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~-~~-~~~n~~~~~~~---~~----~~id~Ir- 113 (397)
T PRK14955 44 SGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD-AG-TSLNISEFDAA---SN----NSVDDIR- 113 (397)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh-cC-CCCCeEeeccc---cc----CCHHHHH-
Confidence 599999999987 556664322110 11112223332211 01 12345556654 22 1123443
Q ss_pred HHHHHHHhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 73 EIVKCIGMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 73 eI~kcv~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
++..-+...+ -+..-+++|-.++ ++|.+....+ .+.+- +.-.+++++|+.
T Consensus 114 ~l~~~~~~~p~~~~~kvvIIdea~-~l~~~~~~~L---Lk~LE-ep~~~t~~Il~t 164 (397)
T PRK14955 114 LLRENVRYGPQKGRYRVYIIDEVH-MLSIAAFNAF---LKTLE-EPPPHAIFIFAT 164 (397)
T ss_pred HHHHHHhhchhcCCeEEEEEeChh-hCCHHHHHHH---HHHHh-cCCCCeEEEEEe
Confidence 3333333222 2566677777777 9998655443 33322 234566666654
No 489
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=92.64 E-value=0.45 Score=48.96 Aligned_cols=19 Identities=16% Similarity=-0.178 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||++|.|+|.-
T Consensus 374 vG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 490
>PRK08233 hypothetical protein; Provisional
Probab=92.63 E-value=0.065 Score=45.93 Aligned_cols=18 Identities=17% Similarity=-0.140 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|.|||||||+++.|.+.
T Consensus 9 ~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 9 AAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999764
No 491
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.63 E-value=0.066 Score=48.48 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+.|+||||+++.|.|.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999997
No 492
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.62 E-value=0.077 Score=48.11 Aligned_cols=20 Identities=5% Similarity=-0.403 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++||||||+++.|.|...
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcC
Confidence 69999999999999999753
No 493
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.61 E-value=0.065 Score=52.40 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=17.4
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|+|||||||++|+|++.
T Consensus 167 I~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 167 LCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred EECCCCccHHHHHHHHHcc
Confidence 3799999999999999985
No 494
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.61 E-value=0.081 Score=47.61 Aligned_cols=20 Identities=25% Similarity=-0.164 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.||||||+++.|.|--.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
No 495
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.60 E-value=0.08 Score=47.26 Aligned_cols=20 Identities=10% Similarity=-0.237 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.|+||||+++.|.|...
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ECCCCCCHHHHHHHHhcCcC
Confidence 69999999999999999754
No 496
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.60 E-value=0.079 Score=47.84 Aligned_cols=20 Identities=5% Similarity=-0.335 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++||||||+++.|.|-..
T Consensus 33 ~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 33 VGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred ECCCCCCHHHHHHHHhcccC
Confidence 69999999999999999754
No 497
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=92.60 E-value=0.066 Score=49.43 Aligned_cols=19 Identities=5% Similarity=-0.456 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 6999999999999999963
No 498
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.59 E-value=3.1 Score=46.90 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 107 HSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 107 ~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
..+..-+|=..-.|.||. . +.|..++.- .|..++.+++..-|
T Consensus 125 ~~l~~~~gi~~~~~~iV~-------Q---G~V~~i~~~-kp~err~iiEEaaG 166 (1163)
T COG1196 125 QDLLADSGIGKESYSIVS-------Q---GKVEEIINA-KPEERRKLIEEAAG 166 (1163)
T ss_pred HHHHHhcCCCCCCCceee-------c---ccHHHHHcC-CHHHHHHHHHHHhc
Confidence 334444555556664432 2 357888876 78888889888655
No 499
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.58 E-value=0.071 Score=47.84 Aligned_cols=19 Identities=16% Similarity=-0.258 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|.-
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 32 LGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 500
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.57 E-value=0.083 Score=47.19 Aligned_cols=20 Identities=10% Similarity=-0.258 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.|+||||+++.|.|.-.
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
Done!