Query 044972
Match_columns 307
No_of_seqs 296 out of 1532
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 3.5E-35 1.2E-39 267.4 19.4 183 3-192 27-223 (247)
2 3lxx_A GTPase IMAP family memb 100.0 5.3E-33 1.8E-37 249.4 16.9 183 3-193 35-230 (239)
3 2xtp_A GTPase IMAP family memb 99.9 1.6E-26 5.5E-31 209.3 20.0 183 3-192 28-223 (260)
4 3def_A T7I23.11 protein; chlor 99.8 7E-20 2.4E-24 167.1 13.4 160 2-169 41-212 (262)
5 1h65_A Chloroplast outer envel 99.8 7.6E-19 2.6E-23 160.7 13.2 151 2-161 44-195 (270)
6 3t5d_A Septin-7; GTP-binding p 99.6 1E-14 3.5E-19 133.6 10.3 150 2-168 13-187 (274)
7 3iev_A GTP-binding protein ERA 99.5 2.8E-14 9.5E-19 133.6 11.5 120 2-132 15-136 (308)
8 1wf3_A GTP-binding protein; GT 99.5 1.3E-13 4.6E-18 129.0 16.1 120 3-133 13-132 (301)
9 4dhe_A Probable GTP-binding pr 99.5 4.5E-14 1.5E-18 123.1 12.0 121 3-133 35-159 (223)
10 1svi_A GTP-binding protein YSX 99.5 8.6E-13 2.9E-17 112.2 14.6 119 3-133 29-149 (195)
11 3pqc_A Probable GTP-binding pr 99.5 2.6E-12 8.9E-17 108.5 16.3 146 3-168 29-177 (195)
12 2dyk_A GTP-binding protein; GT 99.4 2.1E-12 7.2E-17 105.8 11.9 117 2-132 6-122 (161)
13 1mky_A Probable GTP-binding pr 99.4 1.3E-12 4.6E-17 127.6 10.8 117 3-131 7-123 (439)
14 2qu8_A Putative nucleolar GTP- 99.3 8.9E-12 3.1E-16 109.9 13.5 149 3-168 35-188 (228)
15 4dcu_A GTP-binding protein ENG 99.3 3.6E-13 1.2E-17 132.3 4.8 117 3-132 29-145 (456)
16 3iby_A Ferrous iron transport 99.3 8.8E-12 3E-16 113.9 11.1 144 2-169 6-151 (256)
17 2gj8_A MNME, tRNA modification 99.3 1.6E-11 5.6E-16 103.9 11.4 120 3-132 10-129 (172)
18 3t34_A Dynamin-related protein 99.3 6.2E-12 2.1E-16 119.5 9.2 82 45-133 134-218 (360)
19 1jwy_B Dynamin A GTPase domain 99.3 8.1E-12 2.8E-16 115.2 8.5 81 45-133 129-213 (315)
20 1ega_A Protein (GTP-binding pr 99.3 2.1E-11 7.3E-16 113.7 11.4 116 3-132 14-130 (301)
21 2hjg_A GTP-binding protein ENG 99.3 4.4E-12 1.5E-16 123.9 6.5 120 3-133 181-301 (436)
22 2hjg_A GTP-binding protein ENG 99.3 4.2E-12 1.4E-16 124.0 6.3 117 3-132 9-125 (436)
23 2lkc_A Translation initiation 99.2 6.5E-11 2.2E-15 98.6 12.1 109 3-133 14-122 (178)
24 3i8s_A Ferrous iron transport 99.2 2.6E-11 8.8E-16 111.5 10.4 143 3-169 9-153 (274)
25 3geh_A MNME, tRNA modification 99.2 6.2E-12 2.1E-16 124.6 6.6 117 2-133 229-345 (462)
26 2x2e_A Dynamin-1; nitration, h 99.2 7.2E-11 2.5E-15 112.1 13.4 82 45-133 128-212 (353)
27 3gee_A MNME, tRNA modification 99.2 2.1E-11 7.2E-16 121.3 10.0 121 2-133 238-358 (476)
28 4dcu_A GTP-binding protein ENG 99.2 1E-11 3.5E-16 121.9 7.5 121 3-133 201-321 (456)
29 2j69_A Bacterial dynamin-like 99.2 7.5E-10 2.6E-14 114.6 20.6 72 47-133 174-245 (695)
30 1f5n_A Interferon-induced guan 99.2 7.8E-09 2.7E-13 105.4 26.4 102 2-112 43-148 (592)
31 3a1s_A Iron(II) transport prot 99.2 3.4E-10 1.2E-14 103.3 14.3 140 3-169 11-151 (258)
32 3k53_A Ferrous iron transport 99.2 1.1E-10 3.7E-15 106.5 10.4 141 3-169 9-150 (271)
33 1ksh_A ARF-like protein 2; sma 99.2 4.7E-10 1.6E-14 94.6 13.7 109 3-133 24-134 (186)
34 2qag_A Septin-2, protein NEDD5 99.2 1.4E-10 4.7E-15 111.1 11.1 150 2-168 42-217 (361)
35 3clv_A RAB5 protein, putative; 99.1 4.9E-10 1.7E-14 94.3 12.7 135 3-168 13-187 (208)
36 2wji_A Ferrous iron transport 99.1 3.9E-10 1.3E-14 94.2 11.6 138 3-166 9-146 (165)
37 3tw8_B RAS-related protein RAB 99.1 1.4E-10 4.7E-15 96.5 8.6 139 2-168 14-154 (181)
38 2aka_B Dynamin-1; fusion prote 99.1 2.4E-10 8.1E-15 104.2 10.8 80 46-133 124-207 (299)
39 1mky_A Probable GTP-binding pr 99.1 9E-11 3.1E-15 114.7 8.5 120 3-133 186-307 (439)
40 4dsu_A GTPase KRAS, isoform 2B 99.1 2.6E-09 9E-14 89.4 16.0 137 3-168 10-149 (189)
41 2g6b_A RAS-related protein RAB 99.1 3.8E-10 1.3E-14 94.1 10.3 138 3-167 16-156 (180)
42 2fh5_B SR-beta, signal recogni 99.1 7.1E-10 2.4E-14 95.9 11.7 111 3-133 13-130 (214)
43 3zvr_A Dynamin-1; hydrolase, D 99.1 4.7E-10 1.6E-14 117.4 12.5 121 3-133 57-232 (772)
44 2efe_B Small GTP-binding prote 99.1 5.8E-10 2E-14 93.1 10.7 138 3-168 18-158 (181)
45 3bc1_A RAS-related protein RAB 99.1 1.7E-09 5.7E-14 90.7 13.3 139 3-168 17-168 (195)
46 1ek0_A Protein (GTP-binding pr 99.1 1.2E-10 4.2E-15 95.6 6.1 141 3-168 9-152 (170)
47 1z08_A RAS-related protein RAB 99.1 9.4E-10 3.2E-14 90.6 11.3 138 3-168 12-152 (170)
48 2h57_A ADP-ribosylation factor 99.1 1.6E-10 5.4E-15 98.2 6.8 111 3-133 27-141 (190)
49 2wjg_A FEOB, ferrous iron tran 99.1 1E-09 3.5E-14 92.5 11.6 140 3-168 13-152 (188)
50 1upt_A ARL1, ADP-ribosylation 99.1 1.8E-09 6.1E-14 89.0 12.8 110 2-133 12-123 (171)
51 2e87_A Hypothetical protein PH 99.1 1.6E-09 5.4E-14 103.0 14.0 120 2-133 172-295 (357)
52 1r8s_A ADP-ribosylation factor 99.1 1.7E-09 5.8E-14 88.8 12.3 109 3-133 6-116 (164)
53 4a9a_A Ribosome-interacting GT 99.1 6.2E-10 2.1E-14 107.8 11.1 117 2-130 77-194 (376)
54 3tkl_A RAS-related protein RAB 99.1 1.7E-09 5.7E-14 91.6 12.3 139 2-168 21-162 (196)
55 1z0j_A RAB-22, RAS-related pro 99.1 3.3E-10 1.1E-14 93.2 7.8 139 2-168 11-152 (170)
56 2yc2_C IFT27, small RAB-relate 99.0 1.5E-09 5.3E-14 92.4 11.7 139 3-168 26-174 (208)
57 2erx_A GTP-binding protein DI- 99.0 3.6E-10 1.2E-14 93.0 7.3 139 3-168 9-150 (172)
58 3cph_A RAS-related protein SEC 99.0 1.9E-09 6.3E-14 92.6 12.0 137 3-168 26-165 (213)
59 1u8z_A RAS-related protein RAL 99.0 2.7E-09 9.2E-14 87.1 12.4 138 3-168 10-150 (168)
60 3con_A GTPase NRAS; structural 99.0 5E-09 1.7E-13 88.5 14.4 137 3-168 27-166 (190)
61 1z0f_A RAB14, member RAS oncog 99.0 9.4E-10 3.2E-14 91.2 9.6 138 3-168 21-161 (179)
62 2qpt_A EH domain-containing pr 99.0 1.4E-10 4.7E-15 117.2 5.4 126 3-141 71-239 (550)
63 2ged_A SR-beta, signal recogni 99.0 3.1E-10 1.1E-14 96.3 6.7 114 2-133 53-171 (193)
64 1r2q_A RAS-related protein RAB 99.0 7.4E-10 2.5E-14 90.8 8.8 139 2-168 11-152 (170)
65 2bme_A RAB4A, RAS-related prot 99.0 2.7E-09 9.2E-14 89.5 12.3 138 3-168 16-156 (186)
66 4bas_A ADP-ribosylation factor 99.0 2.5E-09 8.4E-14 90.7 12.2 112 2-133 22-142 (199)
67 1xzp_A Probable tRNA modificat 99.0 1.1E-10 3.8E-15 116.2 4.2 114 3-132 249-364 (482)
68 1z2a_A RAS-related protein RAB 99.0 3.7E-09 1.3E-13 86.6 12.7 137 3-168 11-150 (168)
69 2ce2_X GTPase HRAS; signaling 99.0 3.4E-09 1.2E-13 86.1 12.1 137 3-168 9-148 (166)
70 1zbd_A Rabphilin-3A; G protein 99.0 1.6E-09 5.4E-14 92.8 10.5 138 3-168 14-154 (203)
71 2bcg_Y Protein YP2, GTP-bindin 99.0 8.8E-09 3E-13 88.4 15.3 138 3-168 14-154 (206)
72 2qtf_A Protein HFLX, GTP-bindi 99.0 1.8E-09 6.3E-14 103.7 11.9 121 3-133 185-307 (364)
73 1g16_A RAS-related protein SEC 99.0 2.1E-09 7.3E-14 88.3 10.6 137 3-168 9-148 (170)
74 1zd9_A ADP-ribosylation factor 99.0 3.8E-09 1.3E-13 89.8 12.5 110 3-133 28-139 (188)
75 1moz_A ARL1, ADP-ribosylation 99.0 2E-09 6.8E-14 90.1 10.3 109 3-133 24-134 (183)
76 2h17_A ADP-ribosylation factor 99.0 8.9E-10 3E-14 93.0 8.2 109 3-133 27-137 (181)
77 2y8e_A RAB-protein 6, GH09086P 99.0 1.8E-09 6.3E-14 89.4 9.6 138 3-168 20-160 (179)
78 2bov_A RAla, RAS-related prote 99.0 4.3E-09 1.5E-13 89.7 12.2 138 3-168 20-160 (206)
79 2gf9_A RAS-related protein RAB 99.0 4.8E-09 1.6E-13 88.9 12.3 138 3-168 28-168 (189)
80 2oil_A CATX-8, RAS-related pro 99.0 4.1E-09 1.4E-13 89.4 11.8 138 3-168 31-171 (193)
81 2qag_B Septin-6, protein NEDD5 99.0 2.7E-09 9.3E-14 104.9 12.0 147 2-165 47-216 (427)
82 1x3s_A RAS-related protein RAB 99.0 2.7E-09 9.3E-14 90.0 10.5 137 3-168 21-161 (195)
83 2a9k_A RAS-related protein RAL 99.0 7.2E-09 2.5E-13 86.4 12.9 138 3-168 24-164 (187)
84 2fg5_A RAB-22B, RAS-related pr 99.0 1.5E-09 5.2E-14 92.6 8.7 139 3-168 29-169 (192)
85 1wms_A RAB-9, RAB9, RAS-relate 99.0 3E-09 1E-13 88.4 10.0 114 2-132 12-130 (177)
86 2j1l_A RHO-related GTP-binding 99.0 8.2E-09 2.8E-13 90.0 13.2 144 2-168 39-192 (214)
87 2q3h_A RAS homolog gene family 99.0 5.5E-09 1.9E-13 89.2 11.7 111 2-133 25-139 (201)
88 2x77_A ADP-ribosylation factor 98.9 5.7E-09 1.9E-13 88.3 11.6 109 3-133 28-138 (189)
89 1zj6_A ADP-ribosylation factor 98.9 8.3E-09 2.8E-13 87.3 12.6 109 3-133 22-132 (187)
90 2nzj_A GTP-binding protein REM 98.9 6.7E-09 2.3E-13 85.9 11.8 114 3-133 10-126 (175)
91 3t5g_A GTP-binding protein RHE 98.9 1.6E-08 5.5E-13 84.5 14.1 138 3-168 12-152 (181)
92 2fu5_C RAS-related protein RAB 98.9 3.8E-09 1.3E-13 88.6 10.0 137 3-167 14-153 (183)
93 1z06_A RAS-related protein RAB 98.9 4E-09 1.4E-13 89.4 10.1 140 3-168 26-168 (189)
94 1kao_A RAP2A; GTP-binding prot 98.9 2E-09 6.9E-14 87.7 8.0 138 3-168 9-149 (167)
95 1pui_A ENGB, probable GTP-bind 98.9 4.3E-09 1.5E-13 90.5 10.3 117 3-133 32-152 (210)
96 1nrj_B SR-beta, signal recogni 98.9 4.3E-10 1.5E-14 97.5 4.0 110 3-133 18-135 (218)
97 3oes_A GTPase rhebl1; small GT 98.9 6.3E-09 2.2E-13 89.4 11.2 137 3-168 30-170 (201)
98 1mh1_A RAC1; GTP-binding, GTPa 98.9 6.6E-09 2.2E-13 86.8 11.0 144 2-168 10-163 (186)
99 2p5s_A RAS and EF-hand domain 98.9 5.4E-10 1.8E-14 95.9 4.4 144 3-168 34-180 (199)
100 3b1v_A Ferrous iron uptake tra 98.9 3.5E-09 1.2E-13 97.7 10.1 138 3-169 9-148 (272)
101 1ky3_A GTP-binding protein YPT 98.9 2.7E-09 9.2E-14 88.6 8.5 113 3-132 14-132 (182)
102 2f7s_A C25KG, RAS-related prot 98.9 7.8E-09 2.7E-13 89.5 11.7 138 3-168 31-182 (217)
103 2gf0_A GTP-binding protein DI- 98.9 9.4E-10 3.2E-14 93.3 5.7 138 3-168 14-154 (199)
104 3kkq_A RAS-related protein M-R 98.9 3.1E-08 1.1E-12 82.9 14.4 138 2-167 23-163 (183)
105 2cxx_A Probable GTP-binding pr 98.9 1.1E-08 3.7E-13 85.9 11.5 115 3-133 7-137 (190)
106 1m2o_B GTP-binding protein SAR 98.9 1.8E-08 6.2E-13 86.2 12.9 108 3-132 29-138 (190)
107 3r7w_A Gtpase1, GTP-binding pr 98.9 1.3E-08 4.3E-13 94.9 12.7 141 3-158 9-152 (307)
108 2a5j_A RAS-related protein RAB 98.9 1.2E-08 4E-13 86.8 11.1 138 3-168 27-167 (191)
109 1c1y_A RAS-related protein RAP 98.9 4.2E-09 1.4E-13 86.3 8.0 113 2-133 8-123 (167)
110 2atx_A Small GTP binding prote 98.9 2.1E-08 7.1E-13 85.1 12.6 110 3-133 24-137 (194)
111 3llu_A RAS-related GTP-binding 98.9 1.6E-08 5.4E-13 86.6 11.8 117 3-133 26-144 (196)
112 4djt_A GTP-binding nuclear pro 98.9 2.3E-09 7.8E-14 93.0 6.3 137 3-168 17-158 (218)
113 1zun_B Sulfate adenylate trans 98.9 1.7E-08 6E-13 98.4 13.2 132 3-158 30-192 (434)
114 3j2k_7 ERF3, eukaryotic polype 98.9 9.4E-09 3.2E-13 100.7 11.3 111 3-132 23-169 (439)
115 2b6h_A ADP-ribosylation factor 98.9 2.3E-08 7.8E-13 85.7 12.4 109 3-133 35-145 (192)
116 2il1_A RAB12; G-protein, GDP, 98.9 4.2E-09 1.4E-13 90.0 7.5 111 3-132 32-145 (192)
117 3reg_A RHO-like small GTPase; 98.9 1.5E-08 5.3E-13 86.1 10.9 139 2-168 28-171 (194)
118 2hup_A RAS-related protein RAB 98.8 2.3E-08 8E-13 86.2 12.0 138 3-168 35-176 (201)
119 2hxs_A RAB-26, RAS-related pro 98.8 9.7E-09 3.3E-13 85.3 9.2 140 3-168 12-156 (178)
120 2o52_A RAS-related protein RAB 98.8 1.8E-08 6.3E-13 86.7 11.3 138 3-168 31-171 (200)
121 3izq_1 HBS1P, elongation facto 98.8 9E-09 3.1E-13 105.2 10.8 133 3-159 173-341 (611)
122 3p26_A Elongation factor 1 alp 98.8 6.9E-09 2.4E-13 102.7 9.6 133 3-159 39-207 (483)
123 1vg8_A RAS-related protein RAB 98.8 3.1E-09 1.1E-13 90.8 6.1 113 3-132 14-131 (207)
124 3qq5_A Small GTP-binding prote 98.8 2.4E-09 8.2E-14 105.0 5.8 115 3-133 40-155 (423)
125 2fn4_A P23, RAS-related protei 98.8 3.6E-08 1.2E-12 81.7 12.2 139 2-168 14-155 (181)
126 3dz8_A RAS-related protein RAB 98.8 2.1E-09 7E-14 91.5 4.5 140 2-168 28-169 (191)
127 3q72_A GTP-binding protein RAD 98.8 9.8E-09 3.3E-13 84.3 8.3 135 3-167 8-146 (166)
128 1fzq_A ADP-ribosylation factor 98.8 3.4E-08 1.2E-12 83.7 11.8 109 3-133 22-132 (181)
129 2gco_A H9, RHO-related GTP-bin 98.8 2.4E-08 8.4E-13 85.8 11.0 142 3-167 31-182 (201)
130 2atv_A RERG, RAS-like estrogen 98.8 4.4E-09 1.5E-13 89.8 6.1 138 2-168 33-173 (196)
131 1lnz_A SPO0B-associated GTP-bi 98.8 2.9E-09 9.9E-14 101.6 5.5 121 3-133 164-289 (342)
132 2fv8_A H6, RHO-related GTP-bin 98.8 5.4E-08 1.8E-12 84.0 12.7 110 3-133 31-144 (207)
133 3cpj_B GTP-binding protein YPT 98.8 2.3E-08 7.7E-13 87.5 10.2 137 3-167 19-158 (223)
134 1wb1_A Translation elongation 98.8 2.8E-08 9.6E-13 98.6 11.8 128 3-157 25-157 (482)
135 3q85_A GTP-binding protein REM 98.8 5E-08 1.7E-12 80.2 11.5 140 2-168 7-150 (169)
136 1f6b_A SAR1; gtpases, N-termin 98.8 2.2E-08 7.6E-13 86.3 9.6 108 3-132 31-140 (198)
137 4gzl_A RAS-related C3 botulinu 98.8 7.7E-09 2.6E-13 89.5 6.6 111 2-133 35-149 (204)
138 3o47_A ADP-ribosylation factor 98.8 1E-08 3.5E-13 96.6 7.6 109 3-133 171-281 (329)
139 3t1o_A Gliding protein MGLA; G 98.8 3.3E-08 1.1E-12 83.0 9.7 139 2-166 19-173 (198)
140 2c78_A Elongation factor TU-A; 98.8 2E-08 6.9E-13 96.9 9.4 131 3-158 17-162 (405)
141 2qag_C Septin-7; cell cycle, c 98.7 3.6E-08 1.2E-12 96.6 11.1 149 2-166 36-208 (418)
142 3gj0_A GTP-binding nuclear pro 98.7 4.5E-09 1.5E-13 91.6 4.1 135 2-168 20-158 (221)
143 1wxq_A GTP-binding protein; st 98.7 2E-08 7E-13 97.5 9.1 83 3-95 6-112 (397)
144 1d2e_A Elongation factor TU (E 98.7 3.8E-08 1.3E-12 94.9 10.5 131 3-158 9-153 (397)
145 3lvq_E ARF-GAP with SH3 domain 98.7 3.8E-08 1.3E-12 96.9 10.2 109 3-133 328-438 (497)
146 2ew1_A RAS-related protein RAB 98.7 4.5E-08 1.6E-12 85.1 9.5 137 3-167 32-171 (201)
147 3tr5_A RF-3, peptide chain rel 98.7 2.5E-08 8.4E-13 100.3 8.7 111 3-133 19-149 (528)
148 3sjy_A Translation initiation 98.7 1.6E-08 5.6E-13 97.5 7.0 112 3-133 14-144 (403)
149 3bwd_D RAC-like GTP-binding pr 98.7 1E-08 3.5E-13 85.5 4.8 110 3-133 14-127 (182)
150 3sop_A Neuronal-specific septi 98.7 2.2E-08 7.4E-13 92.3 7.0 146 2-164 7-179 (270)
151 1m7b_A RND3/RHOE small GTP-bin 98.7 2.4E-08 8.2E-13 84.3 6.7 142 3-167 13-164 (184)
152 3ihw_A Centg3; RAS, centaurin, 98.7 1.4E-07 4.8E-12 80.3 11.4 135 2-168 25-163 (184)
153 2iwr_A Centaurin gamma 1; ANK 98.7 6.5E-08 2.2E-12 80.6 9.0 106 2-131 12-121 (178)
154 1f60_A Elongation factor EEF1A 98.7 2.3E-08 7.8E-13 98.5 7.2 132 3-158 13-180 (458)
155 1kk1_A EIF2gamma; initiation o 98.7 2E-07 6.8E-12 90.0 13.3 113 3-133 16-152 (410)
156 3l0i_B RAS-related protein RAB 98.7 7.7E-09 2.6E-13 88.7 2.7 113 2-133 38-153 (199)
157 2xex_A Elongation factor G; GT 98.7 5.8E-08 2E-12 100.5 9.7 111 3-133 16-142 (693)
158 1jny_A EF-1-alpha, elongation 98.6 6.3E-08 2.2E-12 94.5 9.2 132 3-158 12-181 (435)
159 1s0u_A EIF-2-gamma, translatio 98.6 4.9E-07 1.7E-11 87.3 14.6 113 3-133 14-150 (408)
160 1puj_A YLQF, conserved hypothe 98.6 2.4E-08 8.3E-13 92.5 4.9 61 2-70 125-185 (282)
161 3h2y_A GTPase family protein; 98.6 8.7E-09 3E-13 98.9 2.0 118 2-133 165-288 (368)
162 3q3j_B RHO-related GTP-binding 98.6 7.1E-08 2.4E-12 84.2 7.6 144 2-168 32-185 (214)
163 2j0v_A RAC-like GTP-binding pr 98.6 1E-07 3.6E-12 82.0 8.6 142 3-167 15-162 (212)
164 3szr_A Interferon-induced GTP- 98.6 1.5E-07 5.3E-12 95.9 10.8 111 46-170 146-259 (608)
165 3ec1_A YQEH GTPase; atnos1, at 98.6 7.6E-09 2.6E-13 99.3 1.1 117 2-133 167-289 (369)
166 3th5_A RAS-related C3 botulinu 98.0 5.6E-09 1.9E-13 89.7 0.0 111 2-133 35-149 (204)
167 3c5c_A RAS-like protein 12; GD 98.6 2.8E-07 9.4E-12 78.4 10.6 136 2-166 26-166 (187)
168 3cbq_A GTP-binding protein REM 98.6 1.6E-06 5.3E-11 74.5 14.9 140 2-168 28-171 (195)
169 1gwn_A RHO-related GTP-binding 98.6 4.6E-08 1.6E-12 85.2 4.9 143 2-167 33-185 (205)
170 2zej_A Dardarin, leucine-rich 98.5 1.4E-07 4.6E-12 80.0 6.9 112 3-132 8-126 (184)
171 2wkq_A NPH1-1, RAS-related C3 98.5 1.8E-07 6.3E-12 85.6 7.7 143 3-167 161-312 (332)
172 2h5e_A Peptide chain release f 98.5 4.4E-07 1.5E-11 91.2 10.9 111 3-133 19-149 (529)
173 1dar_A EF-G, elongation factor 98.5 2.2E-07 7.4E-12 96.1 8.8 111 3-133 18-144 (691)
174 2elf_A Protein translation elo 98.5 1.3E-07 4.6E-12 90.8 6.5 98 3-130 27-125 (370)
175 2g3y_A GTP-binding protein GEM 98.5 1.6E-06 5.4E-11 76.6 12.4 113 3-132 43-159 (211)
176 3izy_P Translation initiation 98.4 2.7E-08 9.2E-13 100.4 0.7 109 3-132 10-118 (537)
177 3q5d_A Atlastin-1; G protein, 98.4 4.4E-07 1.5E-11 89.7 8.7 96 2-111 72-195 (447)
178 2cjw_A GTP-binding protein GEM 98.4 4.8E-07 1.6E-11 77.6 7.7 112 3-131 12-127 (192)
179 3mca_A HBS1, elongation factor 98.4 2.4E-08 8.2E-13 101.6 -0.8 111 3-132 183-329 (592)
180 2qnr_A Septin-2, protein NEDD5 98.4 9E-07 3.1E-11 82.4 9.9 148 2-165 23-195 (301)
181 2j37_W Signal recognition part 98.4 6.9E-07 2.4E-11 89.4 9.3 115 3-133 107-255 (504)
182 1jal_A YCHF protein; nucleotid 98.4 1E-07 3.5E-12 91.8 3.0 83 3-95 8-107 (363)
183 2f9l_A RAB11B, member RAS onco 98.4 2.3E-06 7.7E-11 73.2 11.2 111 2-131 10-123 (199)
184 1r5b_A Eukaryotic peptide chai 98.4 5.5E-07 1.9E-11 88.8 7.4 111 3-132 49-195 (467)
185 1zo1_I IF2, translation initia 98.4 1.3E-07 4.5E-12 94.6 2.9 108 3-132 10-117 (501)
186 2www_A Methylmalonic aciduria 98.3 3.4E-07 1.2E-11 87.1 4.8 62 45-132 165-226 (349)
187 3avx_A Elongation factor TS, e 98.3 1.3E-06 4.4E-11 95.1 9.8 131 3-158 302-446 (1289)
188 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 4.1E-07 1.4E-11 88.4 5.4 85 2-95 25-126 (392)
189 3dpu_A RAB family protein; roc 98.3 6.6E-07 2.3E-11 89.3 7.0 134 3-168 47-191 (535)
190 2rdo_7 EF-G, elongation factor 98.3 4.6E-06 1.6E-10 86.5 13.4 111 3-133 16-149 (704)
191 3cnl_A YLQF, putative uncharac 98.3 3.5E-07 1.2E-11 83.8 3.8 62 2-71 104-166 (262)
192 2ohf_A Protein OLA1, GTP-bindi 98.3 4.3E-07 1.5E-11 88.5 4.4 84 2-95 27-127 (396)
193 1oix_A RAS-related protein RAB 98.2 4.4E-06 1.5E-10 71.3 9.5 110 3-131 35-147 (191)
194 1g7s_A Translation initiation 98.2 1.9E-06 6.4E-11 87.8 8.3 109 3-132 11-136 (594)
195 2dby_A GTP-binding protein; GD 98.2 6.4E-07 2.2E-11 86.3 4.4 85 2-95 6-110 (368)
196 1udx_A The GTP-binding protein 98.2 3.4E-06 1.2E-10 82.5 9.2 119 3-132 163-283 (416)
197 1n0u_A EF-2, elongation factor 98.2 1.9E-06 6.5E-11 91.0 6.8 110 3-131 25-163 (842)
198 2ywe_A GTP-binding protein LEP 98.1 4.4E-06 1.5E-10 85.3 8.7 112 3-133 12-140 (600)
199 3cb4_D GTP-binding protein LEP 98.1 6.7E-06 2.3E-10 83.9 9.8 112 3-133 10-138 (599)
200 4dkx_A RAS-related protein RAB 98.1 6.2E-06 2.1E-10 73.2 7.8 137 3-167 19-158 (216)
201 2dy1_A Elongation factor G; tr 98.1 1.9E-05 6.5E-10 81.2 12.5 109 3-131 15-139 (665)
202 3dm5_A SRP54, signal recogniti 98.1 7.8E-06 2.7E-10 80.7 9.0 73 45-132 181-253 (443)
203 1tq4_A IIGP1, interferon-induc 98.1 9.9E-06 3.4E-10 79.2 9.6 111 3-131 75-188 (413)
204 2p67_A LAO/AO transport system 98.0 1.3E-06 4.4E-11 82.6 1.9 62 45-132 147-208 (341)
205 1yrb_A ATP(GTP)binding protein 98.0 2.3E-05 7.8E-10 69.7 9.7 77 47-133 109-186 (262)
206 3p32_A Probable GTPase RV1496/ 98.0 4.7E-06 1.6E-10 79.0 5.4 63 45-133 170-232 (355)
207 2v3c_C SRP54, signal recogniti 97.9 6.9E-06 2.4E-10 80.6 5.1 73 45-132 179-252 (432)
208 4ido_A Atlastin-1; GTPase, GTP 97.9 5.3E-05 1.8E-09 75.0 10.8 101 2-111 72-195 (457)
209 2qm8_A GTPase/ATPase; G protei 97.8 6.2E-06 2.1E-10 78.0 3.1 34 45-95 146-179 (337)
210 3vqt_A RF-3, peptide chain rel 97.8 0.00015 5E-09 73.1 13.0 111 3-133 37-167 (548)
211 1rj9_A FTSY, signal recognitio 97.8 8.1E-05 2.8E-09 69.6 9.7 75 46-131 184-260 (304)
212 3kl4_A SRP54, signal recogniti 97.8 5E-05 1.7E-09 74.7 8.1 74 45-131 178-251 (433)
213 3c5h_A Glucocorticoid receptor 97.7 1E-05 3.6E-10 72.9 2.3 48 84-132 162-212 (255)
214 1j8m_F SRP54, signal recogniti 97.6 0.00019 6.5E-09 66.8 8.4 75 45-132 179-253 (297)
215 2xxa_A Signal recognition part 97.4 0.0002 7E-09 70.1 6.5 113 3-131 106-253 (433)
216 2yhs_A FTSY, cell division pro 97.4 0.00036 1.2E-08 69.8 8.3 73 45-130 374-450 (503)
217 2wsm_A Hydrogenase expression/ 97.4 9.2E-05 3.2E-09 63.9 3.4 18 3-20 36-53 (221)
218 1t9h_A YLOQ, probable GTPase E 97.3 3.2E-05 1.1E-09 72.7 0.3 53 3-63 179-237 (307)
219 1vma_A Cell division protein F 97.3 0.00036 1.2E-08 65.4 7.1 74 45-131 185-262 (306)
220 3j25_A Tetracycline resistance 97.3 0.0001 3.5E-09 75.4 3.6 111 3-133 8-134 (638)
221 3r7w_B Gtpase2, GTP-binding pr 97.3 0.0011 3.9E-08 62.9 10.6 117 3-133 5-121 (331)
222 2px0_A Flagellar biosynthesis 97.3 0.00019 6.4E-09 66.8 4.9 72 45-131 181-252 (296)
223 1zu4_A FTSY; GTPase, signal re 97.3 0.00053 1.8E-08 64.5 7.6 73 45-130 190-266 (320)
224 3e70_C DPA, signal recognition 97.2 0.00094 3.2E-08 63.1 8.8 70 46-130 211-280 (328)
225 1u0l_A Probable GTPase ENGC; p 97.1 0.00025 8.6E-09 65.6 3.0 55 3-64 175-235 (301)
226 4fn5_A EF-G 1, elongation fact 97.0 0.0036 1.2E-07 64.7 11.9 112 3-133 19-152 (709)
227 2yv5_A YJEQ protein; hydrolase 97.0 0.00045 1.5E-08 64.1 4.4 52 3-62 171-228 (302)
228 2rcn_A Probable GTPase ENGC; Y 96.9 0.00024 8.3E-09 68.1 1.5 20 3-22 221-240 (358)
229 2ffh_A Protein (FFH); SRP54, s 96.7 0.0045 1.5E-07 60.6 8.8 71 45-130 179-249 (425)
230 3b9q_A Chloroplast SRP recepto 96.6 0.0062 2.1E-07 56.6 8.8 98 46-167 183-282 (302)
231 2og2_A Putative signal recogni 96.5 0.0056 1.9E-07 58.5 8.0 97 46-167 240-339 (359)
232 1vpl_A ABC transporter, ATP-bi 95.9 0.072 2.4E-06 48.2 11.5 19 3-21 47-65 (256)
233 3ney_A 55 kDa erythrocyte memb 95.8 0.00055 1.9E-08 60.3 -2.9 48 3-55 25-74 (197)
234 1kgd_A CASK, peripheral plasma 95.0 0.0067 2.3E-07 51.2 1.3 19 3-21 11-29 (180)
235 4dzz_A Plasmid partitioning pr 94.9 0.075 2.6E-06 44.7 7.7 67 46-130 75-142 (206)
236 1lvg_A Guanylate kinase, GMP k 94.9 0.0072 2.5E-07 52.0 1.3 18 3-20 10-27 (198)
237 1zp6_A Hypothetical protein AT 94.8 0.0094 3.2E-07 49.9 1.6 18 3-20 15-32 (191)
238 3tr0_A Guanylate kinase, GMP k 94.7 0.0084 2.9E-07 50.7 1.3 18 3-20 13-30 (205)
239 1znw_A Guanylate kinase, GMP k 94.7 0.0085 2.9E-07 51.6 1.2 19 3-21 26-44 (207)
240 1qvr_A CLPB protein; coiled co 94.5 2.9 9.8E-05 43.7 20.1 18 3-20 197-214 (854)
241 2eyu_A Twitching motility prot 94.5 0.01 3.5E-07 53.9 1.3 18 3-20 31-48 (261)
242 3b5x_A Lipid A export ATP-bind 94.5 0.22 7.6E-06 49.9 11.2 19 3-21 375-393 (582)
243 1ye8_A Protein THEP1, hypothet 94.4 0.011 3.7E-07 50.5 1.3 19 3-21 6-24 (178)
244 2pze_A Cystic fibrosis transme 94.4 0.036 1.2E-06 49.1 4.6 43 3-62 40-82 (229)
245 3a00_A Guanylate kinase, GMP k 94.2 0.012 4.2E-07 49.8 1.1 19 3-21 7-25 (186)
246 3tif_A Uncharacterized ABC tra 94.2 0.015 5.1E-07 51.9 1.7 19 3-21 37-55 (235)
247 1z6g_A Guanylate kinase; struc 94.2 0.013 4.4E-07 51.3 1.2 19 3-21 29-47 (218)
248 2cbz_A Multidrug resistance-as 94.2 0.058 2E-06 48.1 5.6 19 3-21 37-55 (237)
249 4f4c_A Multidrug resistance pr 94.0 0.035 1.2E-06 61.3 4.4 19 3-21 1111-1129(1321)
250 3c8u_A Fructokinase; YP_612366 94.0 0.013 4.4E-07 50.5 0.8 18 3-20 28-45 (208)
251 3jvv_A Twitching mobility prot 94.0 0.015 5.1E-07 55.4 1.2 18 3-20 129-146 (356)
252 4gp7_A Metallophosphoesterase; 94.0 0.018 6.2E-07 48.3 1.6 17 3-19 15-31 (171)
253 2pcj_A ABC transporter, lipopr 93.8 0.017 5.7E-07 51.1 1.3 19 3-21 36-54 (224)
254 2j41_A Guanylate kinase; GMP, 93.8 0.018 6.2E-07 48.6 1.4 19 3-21 12-30 (207)
255 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.15 5.1E-06 44.5 7.3 17 3-19 45-61 (262)
256 3asz_A Uridine kinase; cytidin 93.7 0.015 5.1E-07 49.7 0.7 18 3-20 12-29 (211)
257 4g1u_C Hemin import ATP-bindin 93.7 0.021 7.3E-07 52.0 1.7 19 3-21 43-61 (266)
258 2onk_A Molybdate/tungstate ABC 93.6 0.024 8.3E-07 50.8 2.0 19 3-21 30-48 (240)
259 2bdt_A BH3686; alpha-beta prot 93.6 0.019 6.6E-07 48.2 1.2 17 3-19 8-24 (189)
260 3gfo_A Cobalt import ATP-bindi 93.6 0.023 7.9E-07 52.1 1.8 19 3-21 40-58 (275)
261 1g6h_A High-affinity branched- 93.6 0.023 7.9E-07 51.2 1.7 19 3-21 39-57 (257)
262 1p9r_A General secretion pathw 93.6 0.019 6.5E-07 55.9 1.2 18 3-20 173-190 (418)
263 1s96_A Guanylate kinase, GMP k 93.6 0.02 6.9E-07 50.6 1.3 19 3-21 22-40 (219)
264 4a82_A Cystic fibrosis transme 93.5 0.32 1.1E-05 48.8 10.2 19 3-21 373-391 (578)
265 2gza_A Type IV secretion syste 93.5 0.021 7E-07 54.2 1.4 19 3-21 181-199 (361)
266 2ff7_A Alpha-hemolysin translo 93.5 0.024 8.3E-07 50.9 1.7 19 3-21 41-59 (247)
267 1b0u_A Histidine permease; ABC 93.5 0.025 8.5E-07 51.3 1.8 19 3-21 38-56 (262)
268 1kag_A SKI, shikimate kinase I 93.5 0.022 7.5E-07 46.9 1.3 18 3-20 10-27 (173)
269 2d2e_A SUFC protein; ABC-ATPas 93.5 0.027 9.1E-07 50.6 1.9 18 3-20 35-52 (250)
270 3tau_A Guanylate kinase, GMP k 93.4 0.023 8E-07 49.0 1.4 19 3-21 14-32 (208)
271 1sgw_A Putative ABC transporte 93.4 0.027 9.3E-07 49.7 1.8 19 3-21 41-59 (214)
272 2ghi_A Transport protein; mult 93.3 0.027 9.3E-07 51.0 1.7 19 3-21 52-70 (260)
273 2bbw_A Adenylate kinase 4, AK4 93.3 0.032 1.1E-06 49.2 2.1 21 3-23 33-56 (246)
274 1ji0_A ABC transporter; ATP bi 93.3 0.027 9.4E-07 50.2 1.7 19 3-21 38-56 (240)
275 3h4m_A Proteasome-activating n 93.3 0.15 5.2E-06 45.3 6.6 17 3-19 57-73 (285)
276 2zu0_C Probable ATP-dependent 93.3 0.03 1E-06 50.9 2.0 18 3-20 52-69 (267)
277 2qi9_C Vitamin B12 import ATP- 93.3 0.029 9.8E-07 50.7 1.8 19 3-21 32-50 (249)
278 2ewv_A Twitching motility prot 93.2 0.023 7.8E-07 54.2 1.2 18 3-20 142-159 (372)
279 3t15_A Ribulose bisphosphate c 93.2 0.054 1.8E-06 49.5 3.6 17 3-19 42-58 (293)
280 3lw7_A Adenylate kinase relate 93.2 0.03 1E-06 45.2 1.7 15 3-17 7-21 (179)
281 1mv5_A LMRA, multidrug resista 93.2 0.036 1.2E-06 49.5 2.3 19 3-21 34-52 (243)
282 1fnn_A CDC6P, cell division co 93.2 0.37 1.3E-05 44.2 9.3 18 3-20 50-67 (389)
283 4f4c_A Multidrug resistance pr 93.2 0.16 5.4E-06 56.1 7.8 19 3-21 450-468 (1321)
284 2oap_1 GSPE-2, type II secreti 93.1 0.023 7.8E-07 56.7 1.1 18 3-20 266-283 (511)
285 4a74_A DNA repair and recombin 93.1 0.021 7.3E-07 48.8 0.7 18 3-20 31-48 (231)
286 2ixe_A Antigen peptide transpo 93.1 0.031 1E-06 51.0 1.7 19 3-21 51-69 (271)
287 2olj_A Amino acid ABC transpor 93.1 0.031 1.1E-06 50.8 1.8 19 3-21 56-74 (263)
288 2qor_A Guanylate kinase; phosp 93.0 0.034 1.2E-06 47.6 1.9 18 3-20 18-35 (204)
289 2yz2_A Putative ABC transporte 93.0 0.031 1.1E-06 50.7 1.7 19 3-21 39-57 (266)
290 3ec2_A DNA replication protein 93.0 0.033 1.1E-06 46.4 1.7 18 3-20 44-61 (180)
291 1d2n_A N-ethylmaleimide-sensit 93.0 0.13 4.4E-06 45.8 5.7 17 3-19 70-86 (272)
292 2nq2_C Hypothetical ABC transp 93.0 0.032 1.1E-06 50.3 1.7 20 3-22 37-56 (253)
293 2v9p_A Replication protein E1; 93.0 0.027 9.1E-07 52.7 1.2 18 3-20 132-149 (305)
294 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.022 7.6E-07 53.4 0.6 19 3-21 177-195 (330)
295 3lnc_A Guanylate kinase, GMP k 92.9 0.023 7.8E-07 49.6 0.6 19 3-21 33-52 (231)
296 4eun_A Thermoresistant glucoki 92.8 0.031 1.1E-06 47.7 1.3 18 3-20 35-52 (200)
297 3nh6_A ATP-binding cassette SU 92.8 0.026 8.9E-07 52.7 0.8 19 3-21 86-104 (306)
298 2chg_A Replication factor C sm 92.7 0.5 1.7E-05 39.0 8.7 17 3-19 44-60 (226)
299 1jjv_A Dephospho-COA kinase; P 92.7 0.042 1.4E-06 46.7 1.9 17 3-19 8-24 (206)
300 1knq_A Gluconate kinase; ALFA/ 92.6 0.034 1.2E-06 46.0 1.2 17 3-19 14-30 (175)
301 2ehv_A Hypothetical protein PH 92.6 0.034 1.2E-06 48.1 1.3 16 3-18 36-51 (251)
302 1ly1_A Polynucleotide kinase; 92.6 0.042 1.4E-06 45.1 1.7 17 3-19 8-24 (181)
303 1sxj_E Activator 1 40 kDa subu 92.6 0.69 2.4E-05 42.2 10.2 17 3-19 42-58 (354)
304 3kb2_A SPBC2 prophage-derived 92.5 0.041 1.4E-06 44.8 1.6 16 3-18 7-22 (173)
305 1cke_A CK, MSSA, protein (cyti 92.5 0.037 1.2E-06 47.6 1.3 18 3-20 11-28 (227)
306 1zcb_A G alpha I/13; GTP-bindi 92.4 0.35 1.2E-05 46.0 8.1 83 33-131 188-281 (362)
307 3b85_A Phosphate starvation-in 92.4 0.026 9E-07 49.5 0.3 21 3-24 28-48 (208)
308 2ihy_A ABC transporter, ATP-bi 92.4 0.05 1.7E-06 49.9 2.1 19 3-21 53-71 (279)
309 3aez_A Pantothenate kinase; tr 92.3 0.039 1.3E-06 51.4 1.3 18 3-20 96-113 (312)
310 2pjz_A Hypothetical protein ST 92.3 0.046 1.6E-06 49.7 1.8 19 3-21 36-54 (263)
311 1qhx_A CPT, protein (chloramph 92.3 0.048 1.6E-06 45.0 1.7 17 3-19 9-25 (178)
312 3uie_A Adenylyl-sulfate kinase 92.3 0.04 1.4E-06 47.0 1.2 18 3-20 31-48 (200)
313 3thx_A DNA mismatch repair pro 92.2 1.1 3.8E-05 47.8 12.5 48 82-131 739-787 (934)
314 4b4t_L 26S protease subunit RP 92.2 0.45 1.5E-05 46.6 8.8 63 3-95 221-284 (437)
315 2i3b_A HCR-ntpase, human cance 92.1 0.042 1.5E-06 47.4 1.2 20 3-22 7-26 (189)
316 4fcw_A Chaperone protein CLPB; 92.0 0.17 5.9E-06 45.3 5.2 17 3-19 53-69 (311)
317 4b4t_H 26S protease regulatory 91.9 0.93 3.2E-05 44.8 10.7 95 2-126 248-354 (467)
318 2v1u_A Cell division control p 91.9 0.52 1.8E-05 43.0 8.4 18 3-20 50-67 (387)
319 2bbs_A Cystic fibrosis transme 91.9 0.1 3.5E-06 48.1 3.6 43 3-62 70-112 (290)
320 3n70_A Transport activator; si 91.8 0.37 1.3E-05 38.9 6.6 17 3-19 30-46 (145)
321 2jeo_A Uridine-cytidine kinase 91.7 0.05 1.7E-06 48.0 1.2 18 3-20 31-48 (245)
322 3hr8_A Protein RECA; alpha and 91.7 0.66 2.3E-05 44.1 9.2 17 3-19 67-83 (356)
323 2qt1_A Nicotinamide riboside k 91.7 0.057 1.9E-06 46.0 1.6 18 3-20 27-44 (207)
324 4b4t_I 26S protease regulatory 91.6 0.81 2.8E-05 44.9 9.9 63 3-95 222-285 (437)
325 3b9p_A CG5977-PA, isoform A; A 91.6 0.46 1.6E-05 42.4 7.6 17 3-19 60-76 (297)
326 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.052 1.8E-06 46.1 1.2 17 3-19 29-45 (235)
327 3tui_C Methionine import ATP-b 91.6 0.065 2.2E-06 51.4 2.0 19 3-21 60-78 (366)
328 1ex7_A Guanylate kinase; subst 91.6 0.021 7.1E-07 49.6 -1.4 48 3-55 7-56 (186)
329 3rlf_A Maltose/maltodextrin im 91.4 0.069 2.4E-06 51.5 2.0 19 3-21 35-53 (381)
330 4e22_A Cytidylate kinase; P-lo 91.4 0.065 2.2E-06 47.8 1.7 20 3-22 33-55 (252)
331 1njg_A DNA polymerase III subu 91.4 0.073 2.5E-06 44.6 1.9 17 3-19 51-67 (250)
332 1z47_A CYSA, putative ABC-tran 91.3 0.07 2.4E-06 50.8 1.9 19 3-21 47-65 (355)
333 1kht_A Adenylate kinase; phosp 91.2 0.074 2.5E-06 44.0 1.7 16 3-18 9-24 (192)
334 2yyz_A Sugar ABC transporter, 91.1 0.075 2.6E-06 50.7 1.9 19 3-21 35-53 (359)
335 3u61_B DNA polymerase accessor 91.1 0.72 2.5E-05 41.7 8.5 87 3-126 54-142 (324)
336 2it1_A 362AA long hypothetical 91.1 0.077 2.6E-06 50.7 2.0 19 3-21 35-53 (362)
337 2f1r_A Molybdopterin-guanine d 91.1 0.029 1E-06 47.8 -0.9 18 3-20 8-25 (171)
338 1htw_A HI0065; nucleotide-bind 91.1 0.073 2.5E-06 44.6 1.6 19 3-21 39-57 (158)
339 2if2_A Dephospho-COA kinase; a 91.1 0.054 1.9E-06 45.8 0.8 17 3-19 7-23 (204)
340 1xwi_A SKD1 protein; VPS4B, AA 91.1 0.62 2.1E-05 42.9 8.1 17 3-19 51-67 (322)
341 3t61_A Gluconokinase; PSI-biol 91.0 0.064 2.2E-06 45.5 1.2 17 3-19 24-40 (202)
342 3fvq_A Fe(3+) IONS import ATP- 91.0 0.067 2.3E-06 51.1 1.4 19 3-21 36-54 (359)
343 1g29_1 MALK, maltose transport 91.0 0.08 2.7E-06 50.7 1.9 19 3-21 35-53 (372)
344 1np6_A Molybdopterin-guanine d 90.9 0.07 2.4E-06 45.6 1.3 18 3-20 12-29 (174)
345 3cm0_A Adenylate kinase; ATP-b 90.8 0.098 3.4E-06 43.4 2.1 16 3-18 10-25 (186)
346 3kta_A Chromosome segregation 90.7 0.061 2.1E-06 44.7 0.8 17 3-19 32-48 (182)
347 2cvh_A DNA repair and recombin 90.7 0.072 2.5E-06 45.1 1.2 17 3-19 26-42 (220)
348 4b4t_K 26S protease regulatory 90.7 0.76 2.6E-05 44.8 8.7 37 3-66 212-248 (428)
349 4b4t_J 26S protease regulatory 90.6 0.96 3.3E-05 43.9 9.2 17 3-19 188-204 (405)
350 3d31_A Sulfate/molybdate ABC t 90.6 0.069 2.3E-06 50.7 1.1 19 3-21 32-50 (348)
351 3trf_A Shikimate kinase, SK; a 90.6 0.089 3E-06 43.7 1.7 16 3-18 11-26 (185)
352 1lw7_A Transcriptional regulat 90.6 0.069 2.4E-06 50.2 1.1 18 3-20 176-193 (365)
353 3vaa_A Shikimate kinase, SK; s 90.6 0.091 3.1E-06 44.7 1.7 17 3-19 31-47 (199)
354 1cr0_A DNA primase/helicase; R 90.5 0.064 2.2E-06 48.5 0.7 18 3-20 41-58 (296)
355 2rhm_A Putative kinase; P-loop 90.4 0.077 2.6E-06 44.1 1.2 16 3-18 11-26 (193)
356 1sq5_A Pantothenate kinase; P- 90.4 0.066 2.2E-06 49.3 0.8 18 3-20 86-103 (308)
357 1v43_A Sugar-binding transport 90.4 0.11 3.8E-06 49.7 2.4 19 3-21 43-61 (372)
358 3gd7_A Fusion complex of cysti 90.3 0.083 2.8E-06 50.9 1.4 19 3-21 53-71 (390)
359 2jaq_A Deoxyguanosine kinase; 90.3 0.099 3.4E-06 43.7 1.7 17 3-19 6-22 (205)
360 1rz3_A Hypothetical protein rb 90.3 0.07 2.4E-06 45.6 0.8 17 3-19 28-44 (201)
361 2kjq_A DNAA-related protein; s 90.3 0.051 1.7E-06 44.9 -0.1 18 3-20 42-59 (149)
362 1via_A Shikimate kinase; struc 90.0 0.11 3.7E-06 43.0 1.7 16 3-18 10-25 (175)
363 1oxx_K GLCV, glucose, ABC tran 90.0 0.065 2.2E-06 50.9 0.4 19 3-21 37-55 (353)
364 1ixz_A ATP-dependent metallopr 89.9 0.093 3.2E-06 46.1 1.3 18 3-20 55-72 (254)
365 1n0w_A DNA repair protein RAD5 89.9 0.094 3.2E-06 45.1 1.3 18 3-20 30-47 (243)
366 1nks_A Adenylate kinase; therm 89.9 0.11 3.7E-06 43.0 1.6 17 3-19 7-23 (194)
367 1zuh_A Shikimate kinase; alpha 89.8 0.14 4.9E-06 41.9 2.3 21 3-23 13-36 (168)
368 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.63 2.2E-05 43.9 7.1 16 3-18 29-44 (365)
369 1y63_A LMAJ004144AAA protein; 89.8 0.11 3.9E-06 43.6 1.7 17 3-19 16-32 (184)
370 2hf9_A Probable hydrogenase ni 89.8 0.098 3.3E-06 44.7 1.3 18 3-20 44-61 (226)
371 2ze6_A Isopentenyl transferase 89.8 0.11 3.9E-06 46.3 1.7 17 3-19 7-23 (253)
372 1tev_A UMP-CMP kinase; ploop, 89.7 0.12 4E-06 42.8 1.7 16 3-18 9-24 (196)
373 3syl_A Protein CBBX; photosynt 89.7 0.46 1.6E-05 42.5 5.8 17 3-19 73-89 (309)
374 1qhl_A Protein (cell division 89.5 0.069 2.4E-06 47.7 0.1 19 3-21 33-51 (227)
375 1e6c_A Shikimate kinase; phosp 89.3 0.13 4.5E-06 42.0 1.7 15 3-17 8-22 (173)
376 1jbk_A CLPB protein; beta barr 89.3 0.14 4.9E-06 41.4 1.9 18 3-20 49-66 (195)
377 3vfd_A Spastin; ATPase, microt 89.3 0.85 2.9E-05 42.9 7.5 16 3-18 154-169 (389)
378 3tqc_A Pantothenate kinase; bi 89.3 0.11 3.7E-06 48.8 1.3 18 3-20 98-115 (321)
379 2x8a_A Nuclear valosin-contain 89.3 0.11 3.6E-06 47.2 1.2 18 3-20 50-67 (274)
380 2iyv_A Shikimate kinase, SK; t 89.2 0.13 4.6E-06 42.6 1.7 20 3-22 8-30 (184)
381 3b60_A Lipid A export ATP-bind 89.2 0.11 3.7E-06 52.2 1.3 19 3-21 375-393 (582)
382 1cip_A Protein (guanine nucleo 89.2 0.62 2.1E-05 44.1 6.5 83 33-131 180-273 (353)
383 2plr_A DTMP kinase, probable t 89.1 0.16 5.5E-06 42.6 2.1 16 3-18 10-25 (213)
384 1odf_A YGR205W, hypothetical 3 89.1 0.12 4E-06 47.7 1.3 18 3-20 37-54 (290)
385 1in4_A RUVB, holliday junction 89.0 0.11 3.8E-06 48.1 1.2 18 3-20 57-74 (334)
386 3fb4_A Adenylate kinase; psych 89.0 0.16 5.4E-06 43.3 2.0 16 3-18 6-21 (216)
387 2c95_A Adenylate kinase 1; tra 89.0 0.12 4.1E-06 43.0 1.2 16 3-18 15-30 (196)
388 3qf4_B Uncharacterized ABC tra 88.9 0.098 3.4E-06 52.8 0.7 19 3-21 387-405 (598)
389 2pbr_A DTMP kinase, thymidylat 88.7 0.17 6E-06 41.8 2.0 16 3-18 6-21 (195)
390 2z0h_A DTMP kinase, thymidylat 88.7 0.17 6E-06 42.0 2.0 16 3-18 6-21 (197)
391 3ozx_A RNAse L inhibitor; ATP 88.6 0.15 5.1E-06 51.1 1.8 19 3-21 31-49 (538)
392 1gvn_B Zeta; postsegregational 88.5 0.14 4.7E-06 46.8 1.4 18 2-19 38-55 (287)
393 1uf9_A TT1252 protein; P-loop, 88.5 0.13 4.6E-06 42.9 1.2 18 3-20 14-31 (203)
394 3qf4_A ABC transporter, ATP-bi 88.5 0.11 3.6E-06 52.4 0.6 19 3-21 375-393 (587)
395 3iij_A Coilin-interacting nucl 88.5 0.16 5.5E-06 42.0 1.7 16 3-18 17-32 (180)
396 1nij_A Hypothetical protein YJ 88.4 0.085 2.9E-06 48.8 -0.1 19 3-21 10-28 (318)
397 2yl4_A ATP-binding cassette SU 88.4 0.11 3.6E-06 52.4 0.6 19 3-21 376-394 (595)
398 1yqt_A RNAse L inhibitor; ATP- 88.4 0.17 5.7E-06 50.6 2.0 20 3-22 53-72 (538)
399 1iy2_A ATP-dependent metallopr 88.3 0.14 4.8E-06 45.8 1.3 18 3-20 79-96 (278)
400 1qf9_A UMP/CMP kinase, protein 88.3 0.14 4.8E-06 42.2 1.2 16 3-18 12-27 (194)
401 2v54_A DTMP kinase, thymidylat 88.2 0.2 6.7E-06 42.0 2.1 17 3-19 10-26 (204)
402 2pt5_A Shikimate kinase, SK; a 88.2 0.2 6.8E-06 40.7 2.0 15 3-17 6-20 (168)
403 2pez_A Bifunctional 3'-phospho 88.2 0.2 6.9E-06 41.5 2.1 17 3-19 11-27 (179)
404 3dl0_A Adenylate kinase; phosp 88.2 0.19 6.7E-06 42.8 2.0 16 3-18 6-21 (216)
405 2vli_A Antibiotic resistance p 88.1 0.11 3.9E-06 42.7 0.5 16 3-18 11-26 (183)
406 3a8t_A Adenylate isopentenyltr 88.1 0.28 9.4E-06 46.6 3.2 68 3-77 46-122 (339)
407 1vht_A Dephospho-COA kinase; s 88.0 0.18 6.1E-06 43.2 1.7 16 3-18 10-25 (218)
408 2bwj_A Adenylate kinase 5; pho 88.0 0.15 5.2E-06 42.5 1.2 16 3-18 18-33 (199)
409 2yvu_A Probable adenylyl-sulfa 88.0 0.18 6.3E-06 42.0 1.7 18 3-20 19-36 (186)
410 3te6_A Regulatory protein SIR3 87.9 2.4 8.2E-05 39.5 9.6 18 3-20 51-68 (318)
411 3a4m_A L-seryl-tRNA(SEC) kinas 87.9 0.18 6.2E-06 45.0 1.7 16 3-18 10-25 (260)
412 2cdn_A Adenylate kinase; phosp 87.8 0.19 6.5E-06 42.4 1.7 16 3-18 26-41 (201)
413 2vp4_A Deoxynucleoside kinase; 87.8 0.14 4.8E-06 44.7 0.9 18 3-20 26-43 (230)
414 4b4t_M 26S protease regulatory 87.8 1.1 3.7E-05 43.8 7.3 18 3-20 221-238 (434)
415 1jr3_A DNA polymerase III subu 87.7 0.2 6.9E-06 45.9 2.0 17 3-19 44-60 (373)
416 2ius_A DNA translocase FTSK; n 87.6 0.17 5.9E-06 50.5 1.5 19 2-20 172-190 (512)
417 2wwf_A Thymidilate kinase, put 87.4 0.19 6.6E-06 42.3 1.5 16 3-18 16-31 (212)
418 3ec1_A YQEH GTPase; atnos1, at 87.2 0.3 1E-05 46.2 3.0 106 33-167 36-144 (369)
419 1nlf_A Regulatory protein REPA 87.0 0.15 5.3E-06 45.6 0.7 17 3-19 36-52 (279)
420 3j16_B RLI1P; ribosome recycli 87.0 0.26 8.8E-06 50.1 2.5 21 3-23 109-129 (608)
421 3euj_A Chromosome partition pr 87.0 0.18 6.3E-06 50.0 1.3 19 3-21 35-53 (483)
422 1xp8_A RECA protein, recombina 86.9 1.5 5.3E-05 41.5 7.7 16 3-18 80-95 (366)
423 1nn5_A Similar to deoxythymidy 86.9 0.19 6.4E-06 42.5 1.2 16 3-18 15-30 (215)
424 3bk7_A ABC transporter ATP-bin 86.9 0.21 7.3E-06 50.7 1.8 20 3-22 123-142 (607)
425 1aky_A Adenylate kinase; ATP:A 86.9 0.26 8.9E-06 42.3 2.1 16 3-18 10-25 (220)
426 1f2t_A RAD50 ABC-ATPase; DNA d 86.8 0.25 8.6E-06 40.6 1.9 16 3-18 29-44 (149)
427 3ake_A Cytidylate kinase; CMP 86.8 0.23 7.9E-06 41.6 1.7 16 3-18 8-23 (208)
428 2grj_A Dephospho-COA kinase; T 86.8 0.23 7.9E-06 42.8 1.7 21 3-23 18-41 (192)
429 4ag6_A VIRB4 ATPase, type IV s 86.7 0.17 5.9E-06 47.7 0.9 19 2-20 40-58 (392)
430 1ukz_A Uridylate kinase; trans 86.7 0.28 9.6E-06 41.3 2.2 16 3-18 21-36 (203)
431 3bos_A Putative DNA replicatio 86.4 0.26 9E-06 41.8 1.8 17 3-19 58-74 (242)
432 1svm_A Large T antigen; AAA+ f 86.4 0.2 7E-06 47.9 1.2 17 3-19 175-191 (377)
433 1zd8_A GTP:AMP phosphotransfer 86.4 0.24 8.2E-06 42.8 1.6 16 3-18 13-28 (227)
434 2p5t_B PEZT; postsegregational 86.4 0.15 5.1E-06 45.3 0.2 17 3-19 38-54 (253)
435 1ewq_A DNA mismatch repair pro 86.2 1.5 5.1E-05 45.8 7.8 18 3-20 582-599 (765)
436 1zak_A Adenylate kinase; ATP:A 86.2 0.24 8.4E-06 42.5 1.5 16 3-18 11-26 (222)
437 2npi_A Protein CLP1; CLP1-PCF1 86.1 0.18 6.2E-06 49.5 0.7 19 3-21 144-162 (460)
438 3nwj_A ATSK2; P loop, shikimat 86.0 0.23 7.7E-06 44.8 1.2 17 3-19 54-70 (250)
439 2xb4_A Adenylate kinase; ATP-b 85.9 0.31 1.1E-05 42.2 2.1 16 3-18 6-21 (223)
440 1lv7_A FTSH; alpha/beta domain 85.9 0.23 8E-06 43.6 1.3 17 3-19 51-67 (257)
441 2dr3_A UPF0273 protein PH0284; 85.7 0.25 8.5E-06 42.4 1.4 16 3-18 29-44 (247)
442 3ozx_A RNAse L inhibitor; ATP 85.7 0.32 1.1E-05 48.7 2.3 20 3-22 300-319 (538)
443 1ltq_A Polynucleotide kinase; 85.7 0.28 9.6E-06 44.0 1.7 17 3-19 8-24 (301)
444 1e4v_A Adenylate kinase; trans 85.6 0.27 9.3E-06 42.0 1.5 16 3-18 6-21 (214)
445 2p65_A Hypothetical protein PF 85.2 0.24 8E-06 40.2 0.9 17 3-19 49-65 (187)
446 3pvs_A Replication-associated 85.1 2.8 9.4E-05 40.7 8.6 17 3-19 56-72 (447)
447 3thx_B DNA mismatch repair pro 85.1 2.3 7.9E-05 45.3 8.6 17 3-19 679-695 (918)
448 1gtv_A TMK, thymidylate kinase 85.0 0.14 4.6E-06 43.4 -0.7 17 3-19 6-22 (214)
449 1uj2_A Uridine-cytidine kinase 85.0 0.31 1.1E-05 43.0 1.7 16 3-18 28-43 (252)
450 1r6b_X CLPA protein; AAA+, N-t 84.8 1.3 4.3E-05 45.5 6.4 17 3-19 213-229 (758)
451 1m7g_A Adenylylsulfate kinase; 84.6 0.39 1.3E-05 41.0 2.0 18 3-20 31-48 (211)
452 1ls1_A Signal recognition part 84.5 3 0.0001 38.0 8.2 72 45-131 179-250 (295)
453 1yqt_A RNAse L inhibitor; ATP- 84.5 0.42 1.4E-05 47.7 2.5 21 3-23 318-338 (538)
454 2zan_A Vacuolar protein sortin 84.4 0.91 3.1E-05 43.9 4.8 17 3-19 173-189 (444)
455 2w58_A DNAI, primosome compone 84.3 0.43 1.5E-05 40.1 2.2 17 3-19 60-76 (202)
456 3d8b_A Fidgetin-like protein 1 84.2 1.4 4.8E-05 41.0 5.9 17 3-19 123-139 (357)
457 3be4_A Adenylate kinase; malar 84.0 0.36 1.2E-05 41.5 1.6 20 3-22 11-33 (217)
458 3r20_A Cytidylate kinase; stru 84.0 0.43 1.5E-05 42.7 2.1 16 3-18 15-30 (233)
459 3h2y_A GTPase family protein; 83.9 0.98 3.3E-05 42.7 4.7 78 33-133 34-111 (368)
460 1ak2_A Adenylate kinase isoenz 83.8 0.44 1.5E-05 41.4 2.1 16 3-18 22-37 (233)
461 3tlx_A Adenylate kinase 2; str 83.8 0.46 1.6E-05 41.9 2.2 16 3-18 35-50 (243)
462 2gno_A DNA polymerase III, gam 83.8 2.4 8.3E-05 38.9 7.2 94 3-126 24-118 (305)
463 2obl_A ESCN; ATPase, hydrolase 83.7 0.28 9.5E-06 46.3 0.8 19 3-21 77-95 (347)
464 3cf2_A TER ATPase, transitiona 83.7 2.1 7.1E-05 45.0 7.5 95 3-126 244-346 (806)
465 3g5u_A MCG1178, multidrug resi 83.6 0.31 1.1E-05 53.6 1.2 19 3-21 422-440 (1284)
466 1pzn_A RAD51, DNA repair and r 83.6 0.28 9.5E-06 46.1 0.7 18 3-20 137-154 (349)
467 3bk7_A ABC transporter ATP-bin 83.4 0.5 1.7E-05 48.0 2.5 20 3-22 388-407 (607)
468 1xjc_A MOBB protein homolog; s 83.3 0.45 1.5E-05 40.6 1.9 19 2-20 9-27 (169)
469 2ce7_A Cell division protein F 83.3 2.1 7.2E-05 42.1 7.0 18 3-20 55-72 (476)
470 2f6r_A COA synthase, bifunctio 83.1 0.35 1.2E-05 43.8 1.2 16 3-18 81-96 (281)
471 1tue_A Replication protein E1; 83.1 0.32 1.1E-05 43.3 0.9 16 3-18 64-79 (212)
472 1a5t_A Delta prime, HOLB; zinc 83.1 4.2 0.00014 37.3 8.6 110 3-126 30-144 (334)
473 2iut_A DNA translocase FTSK; n 82.9 0.43 1.5E-05 48.3 1.9 19 2-20 219-237 (574)
474 3qks_A DNA double-strand break 82.9 0.45 1.5E-05 41.0 1.7 15 3-17 29-43 (203)
475 3j16_B RLI1P; ribosome recycli 82.8 0.53 1.8E-05 47.9 2.5 24 3-26 384-407 (608)
476 3d3q_A TRNA delta(2)-isopenten 82.8 0.45 1.5E-05 45.1 1.8 17 3-19 13-29 (340)
477 2dpy_A FLII, flagellum-specifi 82.4 0.33 1.1E-05 47.3 0.8 19 3-21 163-181 (438)
478 2r62_A Cell division protease 82.3 0.52 1.8E-05 41.4 1.9 18 2-19 49-66 (268)
479 1q3t_A Cytidylate kinase; nucl 82.2 0.41 1.4E-05 41.7 1.2 17 3-19 22-38 (236)
480 3crm_A TRNA delta(2)-isopenten 82.1 0.48 1.6E-05 44.6 1.7 18 3-20 11-28 (323)
481 3hu3_A Transitional endoplasmi 81.7 1.1 3.7E-05 44.2 4.2 17 3-19 244-260 (489)
482 3la6_A Tyrosine-protein kinase 81.7 3.5 0.00012 37.4 7.4 63 48-130 203-266 (286)
483 1azs_C GS-alpha; complex (lyas 81.6 3.4 0.00012 39.8 7.6 83 33-131 204-297 (402)
484 1sxj_C Activator 1 40 kDa subu 81.6 0.43 1.5E-05 43.9 1.2 18 3-20 52-69 (340)
485 3exa_A TRNA delta(2)-isopenten 81.6 0.54 1.9E-05 44.3 1.9 69 3-78 9-85 (322)
486 1qvr_A CLPB protein; coiled co 81.6 1.4 4.9E-05 46.0 5.3 17 3-19 594-610 (854)
487 4fid_A G protein alpha subunit 81.5 7.4 0.00025 36.6 9.7 84 33-132 148-242 (340)
488 2zts_A Putative uncharacterize 81.4 0.58 2E-05 40.1 1.9 15 3-17 36-50 (251)
489 3mq7_A Bone marrow stromal ant 81.4 11 0.00036 30.4 9.1 28 272-299 74-101 (121)
490 4eaq_A DTMP kinase, thymidylat 81.3 0.62 2.1E-05 40.9 2.1 17 3-19 32-48 (229)
491 3eph_A TRNA isopentenyltransfe 81.1 0.57 2E-05 45.6 1.9 69 3-78 8-84 (409)
492 2iw3_A Elongation factor 3A; a 81.0 0.47 1.6E-05 51.0 1.4 20 2-21 704-723 (986)
493 3pih_A Uvrabc system protein A 80.9 3.3 0.00011 44.1 7.8 13 3-15 616-628 (916)
494 3foz_A TRNA delta(2)-isopenten 80.9 0.59 2E-05 43.9 1.9 17 3-19 16-32 (316)
495 1ofh_A ATP-dependent HSL prote 80.8 0.58 2E-05 41.5 1.7 17 3-19 56-72 (310)
496 1l8q_A Chromosomal replication 80.7 0.55 1.9E-05 42.7 1.5 17 3-19 43-59 (324)
497 3sr0_A Adenylate kinase; phosp 80.5 0.69 2.4E-05 40.3 2.0 17 3-19 6-22 (206)
498 3cmu_A Protein RECA, recombina 80.3 1.8 6E-05 50.0 5.7 97 3-127 1433-1561(2050)
499 3cr8_A Sulfate adenylyltranfer 80.0 0.33 1.1E-05 48.8 -0.2 18 3-20 375-392 (552)
500 3qkt_A DNA double-strand break 79.9 0.67 2.3E-05 43.0 1.9 17 2-18 28-44 (339)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=100.00 E-value=3.5e-35 Score=267.41 Aligned_cols=183 Identities=30% Similarity=0.538 Sum_probs=157.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls 81 (307)
+|.|||||||++|+|+|.+.|.+..+..++|..|......+ +|+.++||||| |++++.... +....++.+|+.++
T Consensus 27 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTP---G~~~~~~~~~~~~~~~i~~~~~~~ 102 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTP---DIFSSQVSKTDPGCEERGHCYLLS 102 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECC---SCSSTTHHHHSTTSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECC---CCCCCCCCcHHHHHHHHHHHHHhc
Confidence 69999999999999999999988777777999999999999 99999999999 999887655 56778899999999
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
.+++|+||||++++ +|+..+..+++.+.++||++++++.+||||+++++.+ .++++|+....+..|+++++.||+||
T Consensus 103 ~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 103 APGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp TTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC--CCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 99999999999998 8999999999999999999999999999999999977 68999997644578999999999999
Q ss_pred EEEcCCCCchh--hHHH-----------HcCCCCCChHHHHHHH
Q 044972 162 VLFDNKTKDAA--KRTE-----------QNGGQPYIDEIFAELK 192 (307)
Q Consensus 162 ~~fnNk~~~~~--~~~~-----------~n~g~~yt~~~~~~~e 192 (307)
|+|||++.++. .++. +|||.||+++||+.++
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999987532 2222 7999999999999998
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=249.43 Aligned_cols=183 Identities=31% Similarity=0.556 Sum_probs=136.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|+|+|...+.+..+..++|..|......+ +|+.++||||| |++++..+..++.+++.+++..+.
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTp---G~~~~~~~~~~~~~~~~~~~~~~~ 110 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTP---GIFDTEVPNAETSKEIIRCILLTS 110 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECC---SCC-----CHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHhcC
Confidence 69999999999999999998887766668899999999999 99999999999 999988888888999999999999
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
+++|++|||++++ +++..+...+..+...||...+.++|||+|++|.+.. .++++|+.. .+..++++++.||+||+
T Consensus 111 ~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 111 PGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIFGDRYC 186 (239)
T ss_dssp TCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHHSSSEE
T ss_pred CCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHcCCEEE
Confidence 9999999999998 9999999999999999999988999999999999887 689999986 56789999999999999
Q ss_pred EEcCCCCchh--hHHH-----------HcCCCCCChHHHHHHHH
Q 044972 163 LFDNKTKDAA--KRTE-----------QNGGQPYIDEIFAELKK 193 (307)
Q Consensus 163 ~fnNk~~~~~--~~~~-----------~n~g~~yt~~~~~~~e~ 193 (307)
+|+|++.+.. .++. +|+|.||+++||+++++
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~ 230 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE 230 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC----------
T ss_pred EEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 9999976542 2221 78999999999999984
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.95 E-value=1.6e-26 Score=209.32 Aligned_cols=183 Identities=26% Similarity=0.501 Sum_probs=152.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|+|+|.+.|.+...+.++|..|......| +|..++||||| |++++......+.+++.+++..+.
T Consensus 28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTp---G~~~~~~~~~~~~~~i~~~~~~~~ 103 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTP---DMFSWKDHCEALYKEVQRCYLLSA 103 (260)
T ss_dssp EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECC---GGGGSSCCCHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECc---CCCCCCCCHHHHHHHHHHHHHhcC
Confidence 69999999999999999999987766666888999888999 99999999999 999887666778888999998899
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
+++|++|||++++ +|+..+..++..+.++||..+..++|||+|++.++.+ ..+.+|+....+..++.+++.|+.+++
T Consensus 104 ~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~ 180 (260)
T 2xtp_A 104 PGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRIC 180 (260)
T ss_dssp TCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC--ccHHHHHHhcchHHHHHHHHHhCCeEE
Confidence 9999999999998 7999999999999999999888999999995544544 468888876445678999999999999
Q ss_pred EEcCCCCchhh--HH-----------HHcCCCCCChHHHHHHH
Q 044972 163 LFDNKTKDAAK--RT-----------EQNGGQPYIDEIFAELK 192 (307)
Q Consensus 163 ~fnNk~~~~~~--~~-----------~~n~g~~yt~~~~~~~e 192 (307)
.|++-..++.. .+ ..++|.+|+++++.++.
T Consensus 181 ~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2xtp_A 181 AFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223 (260)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred EecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 89884443221 11 16666899999887766
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=7e-20 Score=167.13 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=128.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|+|+|.+.+... ...+.|..+......+ +|..++||||| |+.+.....+...+.+.+++ +
T Consensus 41 lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTp---G~~~~~~~~~~~~~~i~~~l--~ 113 (262)
T 3def_A 41 VLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTP---GLVEAGYVNHQALELIKGFL--V 113 (262)
T ss_dssp EEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECC---CSEETTEECHHHHHHHHHHT--T
T ss_pred EECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECC---CCCCcccchHHHHHHHHHHH--h
Confidence 3699999999999999998864332 2345566777777788 99999999999 99877655667777777765 5
Q ss_pred CCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC--
Q 044972 82 KDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD-- 158 (307)
Q Consensus 82 ~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg-- 158 (307)
.+++|+||||++++. +|+..+...++.+...||.++++++|||+|+.|....++.++++|+.. ....+++++..|.
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~~~~ 192 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAGSKM 192 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHHhCc
Confidence 679999999998863 799999999999999999999999999999999764444789999975 4567899998876
Q ss_pred ---------CeEEEEcCCCC
Q 044972 159 ---------NRRVLFDNKTK 169 (307)
Q Consensus 159 ---------~R~~~fnNk~~ 169 (307)
..+.+++|...
T Consensus 193 ~~~~~~~~~~pv~~ve~~~~ 212 (262)
T 3def_A 193 RKQEFEDSAIAVVYAENSGR 212 (262)
T ss_dssp CHHHHHHHCCEEEECCCCTT
T ss_pred cccccccccCCEEEEeCCCC
Confidence 45666777653
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=7.6e-19 Score=160.70 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=117.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+|+||||++|+|+|...+.+.. ..+.|..+....... +|..++||||| |+.+.........+.+.++ +.
T Consensus 44 vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTp---G~~~~~~~~~~~~~~i~~~--~~ 116 (270)
T 1h65_A 44 VMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTP---GLIEGGYINDMALNIIKSF--LL 116 (270)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECC---CSEETTEECHHHHHHHHHH--TT
T ss_pred EECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECC---CCCCCccchHHHHHHHHHH--hh
Confidence 47999999999999999988654332 345566666666777 99999999999 9987655445555666554 34
Q ss_pred CCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 82 KDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 82 ~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
.+++|++|||++++. +|+..+...++.+...||.+++.++|||+|++|.....+.++++|+.. ....|+.+++. +.+
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~ 194 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS-GAS 194 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH-HTT
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH-hhh
Confidence 578999999988763 799889999999999999999999999999999765544589999875 45677777764 444
Q ss_pred E
Q 044972 161 R 161 (307)
Q Consensus 161 ~ 161 (307)
+
T Consensus 195 ~ 195 (270)
T 1h65_A 195 L 195 (270)
T ss_dssp C
T ss_pred h
Confidence 3
No 6
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.56 E-value=1e-14 Score=133.65 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcC---HHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSAD---FEFV 70 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~---~~~i 70 (307)
++|.||+||||++|+|+|.+.|....+ ..+++.........+ +|. .++||||| |+.|.... -..+
T Consensus 13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTp---G~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTP---GFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECC---CCSCCSCCTTTTHHH
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECC---CccccccchhhHHHH
Confidence 589999999999999999999876531 222333333333344 564 89999999 98765322 1222
Q ss_pred HHHH----HHHH---------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972 71 SKEI----VKCI---------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE 136 (307)
Q Consensus 71 ~~eI----~kcv---------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~ 136 (307)
...| ...+ .+...++|++|+++... ..++..+...++.+.. ..++|+|+|++|.+.. .
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~--~ 160 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP--E 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--H
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--H
Confidence 2111 1111 12345789999999654 3688888877777654 5789999999998865 4
Q ss_pred cHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972 137 TLEDYLGPECPKPLKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~ 168 (307)
.+..+.. .+.+.+..++-+++.|...+
T Consensus 161 e~~~~~~-----~i~~~l~~~~i~v~~~sa~~ 187 (274)
T 3t5d_A 161 ECQQFKK-----QIMKEIQEHKIKIYEFPETD 187 (274)
T ss_dssp HHHHHHH-----HHHHHHHHTTCCCCCC----
T ss_pred HHHHHHH-----HHHHHHHHcCCeEEcCCCCC
Confidence 4554443 36677777888887776543
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.54 E-value=2.8e-14 Score=133.60 Aligned_cols=120 Identities=12% Similarity=0.169 Sum_probs=92.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+|.|||||||++|.|+|.+..... ...+.|..+....... + +.++++|||| |+.++. ....+.+.+......
T Consensus 15 ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTP---G~~~~~-~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 15 IVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTP---GIYEPK-KSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECC---CCCCCC-TTCHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECc---CCCccc-cchhHHHHHHHHHHH
Confidence 4799999999999999999865432 2234666777777777 7 9999999999 998765 223455666666666
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+.+++|++|+|+++..+++..+... +..+.. ...++|||+|+.|.+.
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSS
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCC
Confidence 6778999999999987788888776 665554 3468999999999873
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=1.3e-13 Score=129.01 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=91.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|+|+|.+...+.. ....|+........+ ++.+++++||| |+.++.. .+.+.+...+..+.
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTp---G~~~~~~---~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTP---GLHKPMD---ALGEFMDQEVYEAL 84 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECC---CCCCCCS---HHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCc---cccchhh---HHHHHHHHHHHHHH
Confidence 6999999999999999998654322 123455666666667 89999999999 9987642 44455566666777
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++..+++..+...++.+...++ -.++|+|+|+.|....
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY 132 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence 89999999999987899888777777766431 3579999999998754
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.53 E-value=4.5e-14 Score=123.12 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=86.3
Q ss_pred CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEE-EeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTM-LKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~-~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv 78 (307)
+|.+||||||++|.|+|.+. .... ...+.|..+...... + ++..+.||||| |+.++..+.. .....+....
T Consensus 35 ~G~~~~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQKRLAFAS-KTPGRTQHINYFSVGPA-AEPVAHLVDLP---GYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp EESCHHHHHHHHHHHTTCSSSSCTT-CCCCSCCCEEEEEESCT-TSCSEEEEECC---CCCSSCCCSTHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCcceeec-CCCCcccceEEEEecCC-CCCcEEEEcCC---CCCcccCChhhHHHHHHHHHHH
Confidence 69999999999999999873 2222 233456665544443 3 67899999999 9877643322 2222333333
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.....++|++|||+++..+++..+...+..+.. ...++|||+|+.|.+..
T Consensus 110 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH
T ss_pred HhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh
Confidence 344678999999999987889888888777765 34679999999998765
No 10
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.47 E-value=8.6e-13 Score=112.17 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=77.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH--HHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF--VSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~--i~~eI~kcv~l 80 (307)
+|.+||||||++|.++|.+......+..+.|..+.. ..+ + ..+.++||| |+.++..+... ....+......
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-~~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YII-N-DELHFVDVP---GYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEE--EEE-T-TTEEEEECC---CBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEE--EEE-C-CcEEEEECC---CCCccccCHHHHHHHHHHHHHHHh
Confidence 699999999999999998622211122234444432 234 4 479999999 98877654321 22223333333
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+++|++|+|+++..+++..+...+.++.. ...+++||+|+.|....
T Consensus 102 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK 149 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG
T ss_pred hhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence 4567899999999987888888777777664 34579999999998765
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.45 E-value=2.6e-12 Score=108.49 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv~l 80 (307)
+|.+||||||++|.|+|.+.... .+..+.|..+... . .+..+.++||| |+.+...+.. .....+......
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~--~--~~~~~~i~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY--L--VNSKYYFVDLP---GYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE--E--ETTTEEEEECC---CBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE--E--ECCcEEEEECC---CCccccCChhhHHHHHHHHHHHHh
Confidence 69999999999999999873222 2223344444322 2 35578999999 9776544332 223334444444
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC-C
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD-N 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg-~ 159 (307)
..+++|++++|+++...++..+...+.++... -.++|||+|+.|.+.. ..++.... .++.++...+ .
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~~~~~~ 168 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM--SERAKKLE-----EHRKVFSKYGEY 168 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHHSSCCS
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh--HHHHHHHH-----HHHHHHhhcCCC
Confidence 55789999999998767888888877777764 4689999999998765 33443332 3455555533 3
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 169 ~~~~~Sa~~ 177 (195)
T 3pqc_A 169 TIIPTSSVT 177 (195)
T ss_dssp CEEECCTTT
T ss_pred ceEEEecCC
Confidence 555554443
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.40 E-value=2.1e-12 Score=105.79 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=80.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|++||||||++|.++|....... ...+.|..+......+ +|..+.++||| |..+... +...+.......
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~----~~~~~~~~~~~~ 76 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTG---GLWSGDK----WEKKIQEKVDRA 76 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECG---GGCSSSS----CCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECC---CCCCccc----hHHHHHHHHHHH
Confidence 3699999999999999987632221 2234555666666777 89999999999 9875432 112223333345
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
..+.|++|+|+++..+++..+......+.. ...+++||.|+.|...
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDPK 122 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSGG
T ss_pred HHhCCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence 578999999999986788887777676665 3457899999999764
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=1.3e-12 Score=127.63 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=81.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|.|+|.+...+. ...++|+........| +|+.+.|+||| |+.... .+.+...+......+.
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~---G~~~~~--~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTC---GVFDNP--QDIISQKMKEVTLNMI 79 (439)
T ss_dssp ECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECT---TTTSSG--GGCCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECC---Cccccc--cchHHHHHHHHHHHHH
Confidence 799999999999999998754332 2347888888888899 99999999999 986421 1112233444444556
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
.+.|++|||+++...+|..+.....++.. .-..+|||.|+.|..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCc
Confidence 88999999999877899988777777765 256799999999864
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=8.9e-12 Score=109.94 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.++|.....+ .....|..+......+ ++..+.++||| |+.+.......... ..++....
T Consensus 35 vG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~~~--~~~~~~~~ 106 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTP---GLLDRAFENRNTIE--MTTITALA 106 (228)
T ss_dssp ECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECT---TTTTSCGGGCCHHH--HHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECC---CCcCcccchhhhHH--HHHHHHhh
Confidence 69999999999999999874322 2234566666666677 88999999999 98764321111000 01111124
Q ss_pred CCCeEEEEEEeCCCCCC---HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC-
Q 044972 83 DGIHAVLIVFSVRNRFS---EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD- 158 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT---~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg- 158 (307)
.++|++|||+++.++.+ ..+...+..+...+ ....+|||+|+.|.+.. ..+.... ...++.+....+
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNM--DSLSIDN----KLLIKQILDNVKN 177 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHH----HHHHHHHHHHCCS
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCc--hhhHHHH----HHHHHHHHHhcCC
Confidence 67899999999975543 22333444444332 24579999999998754 2221111 113556666666
Q ss_pred -CeEEEEcCCC
Q 044972 159 -NRRVLFDNKT 168 (307)
Q Consensus 159 -~R~~~fnNk~ 168 (307)
..|+....++
T Consensus 178 ~~~~~~~SA~~ 188 (228)
T 2qu8_A 178 PIKFSSFSTLT 188 (228)
T ss_dssp CEEEEECCTTT
T ss_pred CceEEEEeccc
Confidence 4555554443
No 15
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=3.6e-13 Score=132.30 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|.|+|.+...+. ...++|..+......| .|..+.||||| |+.+.. +.+.+++......+.
T Consensus 29 vG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTG---GIDIGD---EPFLAQIRQQAEIAM 100 (456)
T ss_dssp ECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCC---C---------CCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEE-CCceEEEEECC---CCCCcc---hHHHHHHHHHHHhhH
Confidence 799999999999999998754332 3446888888888888 89999999999 987432 334555666666667
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+++|++|||++....++..+...++.+.. ....+|||+|+.|...
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 78999999999877899999888777765 4678999999999764
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.31 E-value=8.8e-12 Score=113.88 Aligned_cols=144 Identities=12% Similarity=0.031 Sum_probs=93.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv~ 79 (307)
.+|.|||||||++|.++|.+...+.. .++|.........+ +|..+.||||| |+.+...... ...+.+.+..
T Consensus 6 lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtp---G~~~~~~~~~~~~~~e~i~~~~- 78 (256)
T 3iby_A 6 LIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLP---GVYSLVANAEGISQDEQIAAQS- 78 (256)
T ss_dssp EEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECC---CCSSCC------CHHHHHHHHH-
T ss_pred EECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCC---CcccccccccCCCHHHHHHHHH-
Confidence 37999999999999999998554432 46777777777788 99999999999 9876542100 1222333322
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+...++|++|+|+++. .+ +........+.. .-.++|||+|+.|..... -+ ...+..+.+..|-
T Consensus 79 ~~~~~~d~vi~VvDas-~~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~------~~----~~~~~~l~~~lg~ 141 (256)
T 3iby_A 79 VIDLEYDCIINVIDAC-HL-ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR------GI----SIDTEKLESLLGC 141 (256)
T ss_dssp HHHSCCSEEEEEEEGG-GH-HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT------TC----EECHHHHHHHHCS
T ss_pred HhhCCCCEEEEEeeCC-Cc-hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC------Cc----HHHHHHHHHHcCC
Confidence 2236899999999987 32 223333333332 246899999999975431 11 1224556666677
Q ss_pred eEEEEcCCCC
Q 044972 160 RRVLFDNKTK 169 (307)
Q Consensus 160 R~~~fnNk~~ 169 (307)
.++....+..
T Consensus 142 ~vi~~SA~~g 151 (256)
T 3iby_A 142 SVIPIQAHKN 151 (256)
T ss_dssp CEEECBGGGT
T ss_pred CEEEEECCCC
Confidence 7776665543
No 17
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.29 E-value=1.6e-11 Score=103.89 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=79.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.|+|....... ...+.|.........+ +|..+.++||| |+.+........ .+.+. ....
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~~~~--~~~~~-~~~~ 81 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTA---GLREASDEVERI--GIERA-WQEI 81 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECC---CCSCCSSHHHHH--HHHHH-HHHH
T ss_pred ECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECC---CcccchhHHHHH--HHHHH-HHHH
Confidence 699999999999999997642221 1234455666666778 99999999999 987543111111 12221 1234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|+|+++.++.+.++...+..+...... -..+|||.|+.|...
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCc
Confidence 678999999999766665555555555554321 356899999998643
No 18
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.28 E-value=6.2e-12 Score=119.52 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeE
Q 044972 45 DGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYM 121 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~ 121 (307)
++..+++|||| |+++... ....+...+...+.....+||++|||+... ..+.. ...+..+..+ .+ ....+
T Consensus 134 ~~~~l~lvDtP---G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~-~~~~~ 206 (360)
T 3t34_A 134 NVVNLTLIDLP---GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DP-SGDRT 206 (360)
T ss_dssp TSCSEEEEECC---CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CT-TCTTE
T ss_pred CCCCeEEEECC---CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cc-cCCCE
Confidence 45689999999 9987522 122334445555555567899998888653 22222 2223333332 22 24579
Q ss_pred EEEEecCCCCCC
Q 044972 122 IVVFTRGDELED 133 (307)
Q Consensus 122 IVLfT~~D~L~~ 133 (307)
|+|+|++|.+..
T Consensus 207 i~V~nK~Dl~~~ 218 (360)
T 3t34_A 207 FGVLTKIDLMDK 218 (360)
T ss_dssp EEEEECGGGCCT
T ss_pred EEEEeCCccCCC
Confidence 999999998865
No 19
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.26 E-value=8.1e-12 Score=115.20 Aligned_cols=81 Identities=10% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCeEEEEEEeC-CCCCCHHH-HHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIHAVLIVFSV-RNRFSEEE-GAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGpha~LLVl~~-~~RfT~ee-~~~l~~i~~~FG~~~~~~ 120 (307)
++.++++|||| |+.+... ....+.+.+...+..+..++|++|||++. +..++..+ ...+..+.. ...+
T Consensus 129 ~~~~~~lvDTp---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~ 200 (315)
T 1jwy_B 129 HVVNLTLVDLP---GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKR 200 (315)
T ss_dssp TSCSEEEEECC---CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSS
T ss_pred CCCCcEEEECC---CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCc
Confidence 45789999999 9976321 11122233333344445688999999886 43566444 344444432 3568
Q ss_pred EEEEEecCCCCCC
Q 044972 121 MIVVFTRGDELED 133 (307)
Q Consensus 121 ~IVLfT~~D~L~~ 133 (307)
+|+|+|++|.+..
T Consensus 201 ~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 201 TIGVITKLDLMDK 213 (315)
T ss_dssp EEEEEECTTSSCS
T ss_pred EEEEEcCcccCCc
Confidence 9999999998865
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.26 E-value=2.1e-11 Score=113.68 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC-CCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF-DSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~-Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||++|.|+|.+...+.. ....|+....+...+ ++.+++++||| |+. .+ ...+.+.+...+..+
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTp---G~~~~~---~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTP---GLHMEE---KRAINRLMNKAASSS 85 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSS---SCCHHH---HHHHHHHHTCCTTSC
T ss_pred ECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECc---CCCccc---hhhHHHHHHHHHHHH
Confidence 6999999999999999998654321 223455555666677 88999999999 986 21 123333444334456
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....|++++|+++.. ++..+...++.+.. .....|+++|+.|...
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 678999999999984 99888766665542 3567899999999765
No 21
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.25 E-value=4.4e-12 Score=123.89 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=79.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls 81 (307)
+|.|||||||++|.++|.+...... ..+.|..+......+ +|..+.+|||| |+.+.....+.+.+. ..+.+ .+
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~---G~~~~~~~~~~~e~~~~~~~~-~~ 254 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTA---GMRKKGKVYETTEKYSVLRAL-KA 254 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHH---HHTCBTTBCCCCSHHHHHHHH-HH
T ss_pred EcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECC---CcCcCccccchHHHHHHHHHH-HH
Confidence 6999999999999999987543322 235666666667778 99999999999 986533211111010 11111 12
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|||+++..+++.++...+..+.. .-..+|||+|++|.++.
T Consensus 255 ~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCC
T ss_pred HHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCc
Confidence 345799999999987899888776665543 35789999999998765
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.25 E-value=4.2e-12 Score=124.03 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=75.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|.|+|.+...+. ...++|.........| +|..+.|+||| |+..... .+...+..-...+.
T Consensus 9 vG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~---G~~~~~~---~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTG---GIDIGDE---PFLAQIRQQAEIAM 80 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------------CHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEE-CCceEEEEECC---CCCCcch---hHHHHHHHHHHHHH
Confidence 799999999999999998754332 2346787777777788 89999999999 9863321 14444444444555
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.++|++|||+++...+|..+......+.. .-..+|||.|+.|...
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 67999999999977899888766665543 3568999999999764
No 23
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.24 E-value=6.5e-11 Score=98.62 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++........ .+.|.........+ +|..+.++||| |..+.... .....
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~-----------~~~~~ 76 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTP---GHEAFTTM-----------RARGA 76 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCC---SSSSSSCS-----------CCSSC
T ss_pred ECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECC---CCHHHHHH-----------HHHHH
Confidence 6999999999999999987443222 23444444455677 99999999999 86543211 11345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.++|++|||+++..+.+.+....+..+.. .-..++||+|+.|....
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcC
Confidence 78999999999876677766655554432 23569999999998754
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.24 E-value=2.6e-11 Score=111.48 Aligned_cols=143 Identities=13% Similarity=-0.008 Sum_probs=93.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC-H-HHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD-F-EFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~-~-~~i~~eI~kcv~l 80 (307)
+|.|||||||++|.++|.. |.++. ..++|.........+ +|..+.+|||| |+.+.... . ..+.+.+.+- .+
T Consensus 9 vG~~n~GKSTLin~l~g~~-~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~~~~~~~e~i~~~-~~ 81 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR-QRVGN-WAGVTVERKEGQFST-TDHQVTLVDLP---GTYSLTTISSQTSLDEQIACH-YI 81 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC-EEEEE-CTTSSSEEEEEEEEC-SSCEEEEEECC---CCSCSCC----CCHHHHHHHH-HH
T ss_pred ECCCCCCHHHHHHHHhCCC-cccCC-CCCeeEEEEEEEEEe-CCCceEEEECc---CCCccccccccCCHHHHHHHH-HH
Confidence 6999999999999999998 44332 236677777777777 88999999999 98775421 0 1122223322 23
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
...++|++|+|+++. .+ +.....+..+.+. -.++|||+|+.|..+.. -+ ...+..+.+..|-.
T Consensus 82 ~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~------~~----~~~~~~l~~~lg~~ 144 (274)
T 3i8s_A 82 LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQ------NI----RIEIDALSARLGCP 144 (274)
T ss_dssp HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHT------TE----EECHHHHHHHHTSC
T ss_pred hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-----CCCEEEEEECccchhhh------hH----HHHHHHHHHhcCCC
Confidence 347899999999987 42 3334444445443 46799999999865431 11 11245666666777
Q ss_pred EEEEcCCCC
Q 044972 161 RVLFDNKTK 169 (307)
Q Consensus 161 ~~~fnNk~~ 169 (307)
++...-+..
T Consensus 145 ~i~~SA~~g 153 (274)
T 3i8s_A 145 VIPLVSTRG 153 (274)
T ss_dssp EEECCCGGG
T ss_pred EEEEEcCCC
Confidence 776665543
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.24 E-value=6.2e-12 Score=124.61 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=75.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|+|||||||++|.++|.+...+. ...+.|..+......+ +|.+++++||| |+.++.. .+...-.+.....
T Consensus 229 ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~---G~~~~~~---~ve~~gi~~~~~~ 300 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTA---GIRETSD---QVEKIGVERSRQA 300 (462)
T ss_dssp EEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC--------------------------CC
T ss_pred EEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECC---ccccchh---HHHHHHHHHHhhh
Confidence 3799999999999999998643222 1235666666666678 99999999999 9976432 2222212223345
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++|++|+|+++..+++..+...+..+.. .++|||+|+.|....
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK 345 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred hhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence 678999999999987888888666655532 589999999997754
No 26
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.23 E-value=7.2e-11 Score=112.11 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCcC--HHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeE
Q 044972 45 DGQVVNVIDTPAIARLFDSSAD--FEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYM 121 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~--~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~ 121 (307)
++..++||||| |+.+.... +.++.+.+...+... ....+++|+|++.+..++..+.. ..+..+.. .-.++
T Consensus 128 ~~~~l~lvDTP---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~--~i~~~~~~--~~~~~ 200 (353)
T 2x2e_A 128 HVLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--KVAKEVDP--QGQRT 200 (353)
T ss_dssp TCCSEEEEECC---CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH--HHHHHHCT--TCTTE
T ss_pred CCCCcEEEECC---CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH--HHHHHhCc--CCCce
Confidence 36789999999 99864321 122222222222222 23456777788876567766542 22333221 34689
Q ss_pred EEEEecCCCCCC
Q 044972 122 IVVFTRGDELED 133 (307)
Q Consensus 122 IVLfT~~D~L~~ 133 (307)
|+|+|++|.+..
T Consensus 201 i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 201 IGVITKLDLMDE 212 (353)
T ss_dssp EEEEECGGGSCT
T ss_pred EEEeccccccCc
Confidence 999999998865
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.23 E-value=2.1e-11 Score=121.25 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|.++|.+.+.+.. ..+.|.........+ +|..+.++||| |+.++. ..+.....+.....
T Consensus 238 ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~---G~~~~~---~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 238 IAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTA---GLREAG---EEIEHEGIRRSRMK 309 (476)
T ss_dssp EECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC--------------------------CC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECC---CCCcch---hHHHHHHHHHHHhh
Confidence 37999999999999999986543221 234566776677788 99999999999 997643 22222222223446
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++|++|+|+++....+.++......+...+. -.++|||+|+.|....
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCc
Confidence 678999999999986777643222222222232 4689999999998765
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=1e-11 Score=121.90 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=82.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.++|.+.+.+.. ..+.|..+......+ +|..+.++||| |+.+.....+...+........+.
T Consensus 201 vG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~---G~~~~~~~~~~~e~~~~~~~~~~~ 275 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTA---GMRKKGKVYETTEKYSVLRALKAI 275 (456)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGG---GTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECC---CCCcCcccchHHHHHHHHHHHHHH
Confidence 6999999999999999987654432 234566666666778 99999999999 976532110000000000011123
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|+|+++...++..+...+..+.. .-..+|||.|++|..+.
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCC
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCC
Confidence 46799999999987899999888877765 34789999999998765
No 29
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.21 E-value=7.5e-10 Score=114.61 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=47.7
Q ss_pred eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
..|++|||| |+.++.... ..+. ...++.|++|||+++...++..+...+... +.. .-.+++||+|
T Consensus 174 ~~l~LiDTP---Gl~~~~~~~----~~~~----~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~---l~~-~~~~iiiVlN 238 (695)
T 2j69_A 174 KGIEIVDSP---GLNDTEARN----ELSL----GYVNNCHAILFVMRASQPCTLGERRYLENY---IKG-RGLTVFFLVN 238 (695)
T ss_dssp TTEEEEECC---CHHHHHTCH----HHHT----HHHHSSSEEEEEEETTSTTCHHHHHHHHHH---TTT-SCCCEEEEEE
T ss_pred CCeEEEECC---CCCchhhHH----HHHH----HHHHhCCEEEEEEeCCCccchhHHHHHHHH---HHh-hCCCEEEEEE
Confidence 469999999 987642111 1111 122578999999999878898887655322 211 1345999999
Q ss_pred cCCCCCC
Q 044972 127 RGDELED 133 (307)
Q Consensus 127 ~~D~L~~ 133 (307)
++|.+..
T Consensus 239 K~Dl~~~ 245 (695)
T 2j69_A 239 AWDQVRE 245 (695)
T ss_dssp CGGGGGG
T ss_pred Ccccccc
Confidence 9997643
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.18 E-value=7.8e-09 Score=105.40 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKC 77 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kc 77 (307)
.+|+|||||||++|.|+|... |..+....++|+........+ ..|..++||||| |++++.. +...-..-..-+
T Consensus 43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTp---Gi~~~~~~~~~~~~~~fala 119 (592)
T 1f5n_A 43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTE---GLGDVEKGDNQNDSWIFALA 119 (592)
T ss_dssp EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEEC---CBCCGGGCCCTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCC---CcCcccccchhHHHHHHHHH
Confidence 479999999999999999875 533222223343332211111 157899999999 9998654 221111111222
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL 112 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~ 112 (307)
+.+++ ++|+.. .+ .+++.+...+..+..+
T Consensus 120 ~llss----~lv~n~-~~-~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 120 VLLSS----TFVYNS-IG-TINQQAMDQLYYVTEL 148 (592)
T ss_dssp HHHCS----EEEEEE-ES-CSSHHHHHTTHHHHTH
T ss_pred HHhcC----eEEEEC-CC-CccHHHHHHHHHHHHH
Confidence 33443 333322 34 8999998877766543
No 31
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.17 E-value=3.4e-10 Score=103.33 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=90.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls 81 (307)
+|.|||||||++|.++|...+.... .++|.........+ ++..+.++||| |+.+... +.+ +.+.+.+. .
T Consensus 11 vG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~---e~v~~~~~-~ 80 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLP---GTYSLGYSSID---EKIARDYL-L 80 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECC---CCSSCCSSSHH---HHHHHHHH-H
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECC---CcCccCCCCHH---HHHHHHHH-h
Confidence 6999999999999999988554332 35676666666667 88999999999 9876432 222 12222221 1
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
..++|++|+|+++. .+.. . +.++..+.. .-.++|||+|+.|..... .+. .....+.+..|-.|
T Consensus 81 ~~~~d~ii~V~D~t-~~~~-~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~------~i~----~~~~~l~~~lg~~v 143 (258)
T 3a1s_A 81 KGDADLVILVADSV-NPEQ-S---LYLLLEILE--MEKKVILAMTAIDEAKKT------GMK----IDRYELQKHLGIPV 143 (258)
T ss_dssp HSCCSEEEEEEETT-SCHH-H---HHHHHHHHT--TTCCEEEEEECHHHHHHT------TCC----BCHHHHHHHHCSCE
T ss_pred hcCCCEEEEEeCCC-chhh-H---HHHHHHHHh--cCCCEEEEEECcCCCCcc------chH----HHHHHHHHHcCCCE
Confidence 26899999999987 4422 2 223333322 246799999999865321 121 23567777777777
Q ss_pred EEEcCCCC
Q 044972 162 VLFDNKTK 169 (307)
Q Consensus 162 ~~fnNk~~ 169 (307)
+...-+..
T Consensus 144 i~~SA~~g 151 (258)
T 3a1s_A 144 VFTSSVTG 151 (258)
T ss_dssp EECCTTTC
T ss_pred EEEEeeCC
Confidence 76665543
No 32
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.16 E-value=1.1e-10 Score=106.50 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=91.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||++|.|+|... ..+. ..++|.........+ +|..+.++||| |+.+... +... .+.+ ..+.
T Consensus 9 vG~~g~GKTTL~n~l~g~~~-~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~---~~~~-~~~~ 78 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQ-HVGN-WPGVTVEKKEGIMEY-REKEFLVVDLP---GIYSLTAHSIDE---LIAR-NFIL 78 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCE-EEEE-CTTSSCEEEEEEEEE-TTEEEEEEECC---CCSCCCSSCHHH---HHHH-HHHH
T ss_pred ECCCCCCHHHHHHHHhCCCc-ccCC-CCCeEEEeeEEEEEE-CCceEEEEeCC---CccccccCCHHH---HHHH-Hhhh
Confidence 69999999999999999864 4332 345677777777788 99999999999 9876432 2221 2222 2233
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR 161 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~ 161 (307)
.+++|++|+|+++. .+ . ..+.++..+.... ..+++||+|+.|..+. ..+ ......+.+..|-.+
T Consensus 79 ~~~~d~vi~v~D~~-~~-~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~------~~~----~~~~~~l~~~lg~~~ 142 (271)
T 3k53_A 79 DGNADVIVDIVDST-CL-M---RNLFLTLELFEME-VKNIILVLNKFDLLKK------KGA----KIDIKKMRKELGVPV 142 (271)
T ss_dssp TTCCSEEEEEEEGG-GH-H---HHHHHHHHHHHTT-CCSEEEEEECHHHHHH------HTC----CCCHHHHHHHHSSCE
T ss_pred ccCCcEEEEEecCC-cc-h---hhHHHHHHHHhcC-CCCEEEEEEChhcCcc------ccc----HHHHHHHHHHcCCcE
Confidence 57899999999987 43 2 2233333333221 1678999999986432 111 112566667777777
Q ss_pred EEEcCCCC
Q 044972 162 VLFDNKTK 169 (307)
Q Consensus 162 ~~fnNk~~ 169 (307)
+...-+..
T Consensus 143 ~~~Sa~~g 150 (271)
T 3k53_A 143 IPTNAKKG 150 (271)
T ss_dssp EECBGGGT
T ss_pred EEEEeCCC
Confidence 76665443
No 33
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.16 E-value=4.7e-10 Score=94.58 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=73.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|++++.+ +.. ...|.........+ ++..+.++||| |..+ .........
T Consensus 24 ~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~-----------~~~~~~~~~ 83 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVG---GQKS-----------LRSYWRNYF 83 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEEC---CSHH-----------HHTTGGGGC
T ss_pred ECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECC---CCHh-----------HHHHHHHHh
Confidence 6999999999999999987 321 12344455566677 89999999999 8632 111223456
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
++.|++|+|+++.++-+-+ .+..++..++.. ..-..+|||.|+.|....
T Consensus 84 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp TTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 7899999999987432222 222334443332 124679999999997654
No 34
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.4e-10 Score=111.13 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC-----CCCCceeEEE--EEEEeCCe--EEEEEeCCCCCCCCCCCcCH-----
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS-----SEDTKTCEMQ--RTMLKDGQ--VVNVIDTPAIARLFDSSADF----- 67 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~-----~svT~~c~~~--~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~----- 67 (307)
.+|++|+||||++|+|+|...|..+... ...|...... ...+ +|. .++|+||| |+.|.....
T Consensus 42 vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTp---G~gd~~~~~e~~~~ 117 (361)
T 2qag_A 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTP---GYGDAINCRDCFKT 117 (361)
T ss_dssp ECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-----------------CC
T ss_pred EEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEec---cccccCccHHHHHH
Confidence 5799999999999999999888654311 0122222221 2223 454 78999999 996643211
Q ss_pred --HHHHHHHHHHHH---------hcCCCCeEEEEEEeC-CCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCc
Q 044972 68 --EFVSKEIVKCIG---------MAKDGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDND 135 (307)
Q Consensus 68 --~~i~~eI~kcv~---------ls~pGpha~LLVl~~-~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~ 135 (307)
..+...+...+. +...++|++||++.. +..|...+...++.+ + ...++|||+|++|.+..
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~~-- 189 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLTL-- 189 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCCH--
Confidence 111111112221 123467889988875 447888776554443 2 24579999999998865
Q ss_pred ccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972 136 ETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 136 ~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~ 168 (307)
..+..+.. .+..+++.++-.|+.|..++
T Consensus 190 ~ev~~~k~-----~i~~~~~~~~i~~~~~Sa~~ 217 (361)
T 2qag_A 190 KERERLKK-----RILDEIEEHNIKIYHLPDAE 217 (361)
T ss_dssp HHHHHHHH-----HHHHHTTCC-CCSCCCC---
T ss_pred HHHHHHHH-----HHHHHHHHCCCCEEeCCCcC
Confidence 33433321 34556666666776666543
No 35
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.14 E-value=4.9e-10 Score=94.28 Aligned_cols=135 Identities=12% Similarity=0.023 Sum_probs=80.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC------------------------------------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG------------------------------------ 46 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G------------------------------------ 46 (307)
+|++||||||++|.++|.. |..... ..++.........+ ++
T Consensus 13 ~G~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDT-FHENTN-TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNEN 89 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSC-CCSSCC-CCCSCEEEEEEEET-TC-------------------------------CCCTT
T ss_pred ECCCCCCHHHHHHHHHhCc-CCCCcC-ccccceeEEEEEEe-cCccccccccccccccccccccccccccccccccccCc
Confidence 6999999999999999986 432221 12222333333344 44
Q ss_pred ---eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEE
Q 044972 47 ---QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMI 122 (307)
Q Consensus 47 ---r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~I 122 (307)
..+.++||| |..+.... ......+.|++|||+++.++.+-++ ...+..+....+ ..+|
T Consensus 90 ~~~~~~~i~Dt~---G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 90 LCNIKFDIWDTA---GQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp TCEEEEEEEECT---TGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cceeEEEEEECC---CcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 689999999 85432211 1122357899999999874322222 222333333322 7899
Q ss_pred EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972 123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~ 168 (307)
||+|+.| +.....+ ...++.+++..+-.|+...-++
T Consensus 152 lv~NK~D-~~~~~~~---------~~~~~~~~~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 152 LVANKID-KNKFQVD---------ILEVQKYAQDNNLLFIQTSAKT 187 (208)
T ss_dssp EEEECTT-CC-CCSC---------HHHHHHHHHHTTCEEEEECTTT
T ss_pred EEEECCC-cccccCC---------HHHHHHHHHHcCCcEEEEecCC
Confidence 9999999 4331111 2345667777777776666544
No 36
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.13 E-value=3.9e-10 Score=94.22 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=80.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.++|...+.+.. .+.|.........+ +|..+.++||| |..+..... ..+.+..... ..
T Consensus 9 vG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~~~--~~~~~~~~~~-~~ 79 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLP---GVYSLTANS--IDEIIARDYI-IN 79 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECC---CCSCSSSSS--HHHHHHHHHH-HH
T ss_pred ECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECC---CcccCCCcc--hhHHHHHHHH-hc
Confidence 6999999999999999986543322 23444555555667 89999999999 987543211 1122222211 12
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
.++|++++|+++. .+. . ...++..+.. .-..+|||.|+.|.... . .+. .....+.+..+..|+
T Consensus 80 ~~~~~~i~v~D~~-~~~-~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~--~----~~~----~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 80 EKPDLVVNIVDAT-ALE-R---NLYLTLQLME--MGANLLLALNKMDLAKS--L----GIE----IDVDKLEKILGVKVV 142 (165)
T ss_dssp HCCSEEEEEEETT-CHH-H---HHHHHHHHHH--TTCCEEEEEECHHHHHH--T----TCC----CCHHHHHHHHTSCEE
T ss_pred CCCCEEEEEecCC-chh-H---hHHHHHHHHh--cCCCEEEEEEchHhccc--c----Chh----hHHHHHHHHhCCCEE
Confidence 3689999999986 432 1 2223333221 23578899998885422 1 111 124566666666665
Q ss_pred EEcC
Q 044972 163 LFDN 166 (307)
Q Consensus 163 ~fnN 166 (307)
...-
T Consensus 143 ~~SA 146 (165)
T 2wji_A 143 PLSA 146 (165)
T ss_dssp ECBG
T ss_pred EEEc
Confidence 5443
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=96.45 Aligned_cols=139 Identities=12% Similarity=-0.040 Sum_probs=82.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.++|...... ...+.|.........+ +| ..+.++||| |..+.... ..
T Consensus 14 v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~ 76 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTA---GQERFRTI-----------TS 76 (181)
T ss_dssp EECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEET---TGGGCSSC-----------CG
T ss_pred EECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCC---Cchhhhhh-----------HH
Confidence 369999999999999999874422 2233444555556667 77 578999999 85432211 12
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...++.|++|||+++.++-+-+ .+..++..+.......++|||+|+.|..... . + .......+....+.
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~ 145 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERK--V----V---ETEDAYKFAGQMGI 145 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhc--c----c---CHHHHHHHHHHcCC
Confidence 3457889999999987432222 2222333322222246789999999965431 1 1 11234566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 146 ~~~~~Sa~~ 154 (181)
T 3tw8_B 146 QLFETSAKE 154 (181)
T ss_dssp CEEECBTTT
T ss_pred eEEEEECCC
Confidence 776655543
No 38
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.12 E-value=2.4e-10 Score=104.23 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCe-EEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeE
Q 044972 46 GQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIH-AVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYM 121 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGph-a~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~ 121 (307)
+..+++|||| |+.+... ..+.+...+...+.....+.+ ++|+|+++...++..+. ..++.+. + ...++
T Consensus 124 ~~~l~lvDtp---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~-~~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----P-QGQRT 195 (299)
T ss_dssp CCSEEEEECC---CBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----T-TCSSE
T ss_pred CCCceEEeCC---CCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----C-CCCeE
Confidence 4799999999 9986431 011111122222222223555 45578998766777664 2333332 1 34689
Q ss_pred EEEEecCCCCCC
Q 044972 122 IVVFTRGDELED 133 (307)
Q Consensus 122 IVLfT~~D~L~~ 133 (307)
|+|+|++|.+..
T Consensus 196 i~V~NK~Dl~~~ 207 (299)
T 2aka_B 196 IGVITKLDLMDE 207 (299)
T ss_dssp EEEEECGGGSCT
T ss_pred EEEEEccccCCC
Confidence 999999998765
No 39
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.12 E-value=9e-11 Score=114.66 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=74.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHH-HHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSK-EIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~-eI~kcv~l 80 (307)
+|+|||||||++|.|+|.....+. ...++|.........+ +|+.+.++||| |+....... +.+.. ...+. ..
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~---G~~~~~~~~~~~~e~~~~~~~-~~ 259 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTA---GLRRKSRVEPRTVEKYSNYRV-VD 259 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCS---CC-----------CCSCCHHH-HH
T ss_pred ECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECC---CCccccccchhhHHHHHHHHH-HH
Confidence 699999999999999998754332 2235666666677788 99999999999 874221100 00000 00000 01
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.....|++|+|+++...++.++..+...+.. .-..+|||+|++|.++.
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTT
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCc
Confidence 1235789999999876788877665555443 34689999999998765
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.11 E-value=2.6e-09 Score=89.43 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=79.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |.... .+.+.........+ +|.. +.++||| |..+...... .
T Consensus 10 ~G~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~~-----------~ 71 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNH-FVDEY--DPTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYSAMRD-----------Q 71 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS-CCCCC--CTTCCEEEEEEEEE-TTEEEEEEEEECC---CC---CTTHH-----------H
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCC--CCCchheEEEEEEE-CCcEEEEEEEECC---CcHHHHHHHH-----------H
Confidence 6999999999999999876 43222 22233344444556 7765 6679999 8654322111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++-+-++ ...+..+..... ..-..++||+|+.|..... . ....+..+....+.
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~---------~~~~~~~~~~~~~~ 140 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-V---------DTKQAQDLARSYGI 140 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-S---------CHHHHHHHHHHHTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-c---------CHHHHHHHHHHcCC
Confidence 1235899999999873322112 222233333222 2345789999999976431 1 12245666777777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 141 ~~~~~Sa~~ 149 (189)
T 4dsu_A 141 PFIETSAKT 149 (189)
T ss_dssp CEEECCTTT
T ss_pred eEEEEeCCC
Confidence 776665544
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=3.8e-10 Score=94.10 Aligned_cols=138 Identities=11% Similarity=-0.052 Sum_probs=79.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++....... .....+.........+ +|. .+.++||| |..+. ......
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~-----------~~~~~~ 79 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTA---GQERF-----------RSVTHA 79 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECC---CC-------------------C
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCC---CcHHH-----------HHHHHH
Confidence 699999999999999987643221 1223333344444456 775 78999999 85321 111223
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-++ ...+..+..... ....++||+|+.|.......+ ....+.+.+..+-
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVK---------REDGEKLAKEYGL 148 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSC---------HHHHHHHHHHHTC
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccC---------HHHHHHHHHHcCC
Confidence 4467899999999873322221 223333444332 345899999999987541111 1234555666666
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+...-+
T Consensus 149 ~~~~~Sa~ 156 (180)
T 2g6b_A 149 PFMETSAK 156 (180)
T ss_dssp CEEECCTT
T ss_pred eEEEEeCC
Confidence 66555443
No 42
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.09 E-value=7.1e-10 Score=95.90 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=74.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC---CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD---GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~---Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||++|.+++.. |..... +.+ .......+ + +..+.++||| |..+ ....+. .
T Consensus 13 vG~~~~GKTsli~~l~~~~-~~~~~~--~~~--~~~~~~~~-~~~~~~~~~i~Dt~---G~~~-------~~~~~~---~ 73 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQ-YRDTQT--SIT--DSSAIYKV-NNNRGNSLTLIDLP---GHES-------LRFQLL---D 73 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCCBCC--CCS--CEEEEEEC-SSTTCCEEEEEECC---CCHH-------HHHHHH---H
T ss_pred ECCCCCCHHHHHHHHhCCC-cccccC--Ccc--eeeEEEEe-cCCCccEEEEEECC---CChh-------HHHHHH---H
Confidence 6999999999999999876 543322 222 23334566 5 5789999999 8632 112122 2
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc----ccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK----KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~----~~~~~~IVLfT~~D~L~~ 133 (307)
....++|++|||+++. .+.........++..++.. ....++|||.|+.|....
T Consensus 74 ~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2357899999999987 5544445555666655433 234689999999998765
No 43
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.09 E-value=4.7e-10 Score=117.36 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=79.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-----------------------------------------------
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT----------------------------------------------- 35 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~----------------------------------------------- 35 (307)
+|.+++||||++|+|+|.+.+.++.. .+|+.
T Consensus 57 vG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~ 134 (772)
T 3zvr_A 57 VGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 134 (772)
T ss_dssp EECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTC
T ss_pred ECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCc
Confidence 69999999999999999887654422 23321
Q ss_pred ----eEEEEEEEeCCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHH-HHHH
Q 044972 36 ----CEMQRTMLKDGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEG-AAIH 107 (307)
Q Consensus 36 ----c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~-~~l~ 107 (307)
...-....|++.++++|||| |++.... .+.++...+.+.+... ....+++|+|+++...++..+. ..+.
T Consensus 135 is~~~i~l~I~~P~~~qL~LVDTP---Gi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~ 211 (772)
T 3zvr_A 135 ISPVPINLRVYSPHVLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 211 (772)
T ss_dssp CCSCCEEEEEEETTCCSEEEEECC---CCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHH
T ss_pred ccccceEEEEecCCCCceEEEECC---CcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHH
Confidence 11112223456789999999 9987432 1222222333322221 2578999999998767777775 4554
Q ss_pred HHHHhhccccCCeEEEEEecCCCCCC
Q 044972 108 SLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 108 ~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+.. ....+|+|+|++|.+..
T Consensus 212 ~L~~-----~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 212 EVDP-----QGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHCT-----TCSSEEEEEECTTSSCT
T ss_pred HHHh-----cCCCEEEEEeCcccCCc
Confidence 4432 35789999999999865
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.08 E-value=5.8e-10 Score=93.06 Aligned_cols=138 Identities=15% Similarity=0.016 Sum_probs=80.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++........+ +++.........+ ++ ..+.++||| |...... + ...
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~ 80 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQES--TIGAAFFSQTLAV-NDATVKFEIWDTA---GQERYHS--------L---APM 80 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTSCC--CSCCSEEEEEEEE-TTEEEEEEEEECC---CSGGGGG--------G---THH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcCCC--CceeEEEEEEEEE-CCEEEEEEEEeCC---CChhhhh--------h---hHH
Confidence 69999999999999998864432222 2222233334445 54 489999999 8532110 0 112
Q ss_pred cCCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFS-EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT-~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+ +.....+..+..... .-..++||+|+.|.......+ ...++.+.+..+-
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 149 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVT---------AEDAQTYAQENGL 149 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCC---------HHHHHHHHHHcCC
Confidence 2357899999999864332 112223333333321 145689999999976541111 1235566666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 150 ~~~~~Sa~~ 158 (181)
T 2efe_B 150 FFMETSAKT 158 (181)
T ss_dssp EEEECCSSS
T ss_pred EEEEEECCC
Confidence 666555443
No 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.08 E-value=1.7e-09 Score=90.67 Aligned_cols=139 Identities=10% Similarity=-0.073 Sum_probs=80.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC-----------eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG-----------QVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G-----------r~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
+|.+||||||++|.+++... ..... .+++.... .....+ ++ ..+.++||| |....
T Consensus 17 ~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~---G~~~~------- 83 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKF-NSKFI-TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTA---GLERF------- 83 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEEC---CSGGG-------
T ss_pred ECCCCCCHHHHHHHHhcCCC-CcCcc-cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCC---CcHHH-------
Confidence 69999999999999998753 22211 11121222 223344 43 489999999 97321
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCch
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKP 149 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~ 149 (307)
.........+.|++|||+++.++.+-++ ...+..+..... .....++||+|+.|..... . + ....
T Consensus 84 ----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~----~---~~~~ 149 (195)
T 3bc1_A 84 ----RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQR--A----V---KEEE 149 (195)
T ss_dssp ----HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGC--C----S---CHHH
T ss_pred ----HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--c----c---CHHH
Confidence 1112345678999999999873322222 222333333221 1245789999999975431 1 1 1134
Q ss_pred HHHHHHhcCCeEEEEcCCC
Q 044972 150 LKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 150 Lk~Li~~Cg~R~~~fnNk~ 168 (307)
++.+....+-.|+..+.++
T Consensus 150 ~~~~~~~~~~~~~~~Sa~~ 168 (195)
T 3bc1_A 150 ARELAEKYGIPYFETSAAN 168 (195)
T ss_dssp HHHHHHHHTCCEEECCTTT
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 5666666676666655543
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.07 E-value=1.2e-10 Score=95.57 Aligned_cols=141 Identities=12% Similarity=-0.026 Sum_probs=80.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++........ ...+.+.......+ ++. .+.++||| |..+... + ...
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~~----~-------~~~ 71 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTA---GQERFAS----L-------APX 71 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG----G-------HHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECC---CChhhhh----h-------hhh
Confidence 6999999999999999876332211 12222333344455 554 88999999 8543111 1 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
..++.|++|+|+++.++.+-++ ...+..+....+ .-..++||+|+.|..... ... .+ .......+....+-
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~-~v---~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEG--GER-KV---AREEGEKLAEEKGL 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSS--CCC-CS---CHHHHHHHHHHHTC
T ss_pred hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccc--ccc-CC---CHHHHHHHHHHcCC
Confidence 2367899999999874322222 122333333322 235688999999977541 100 01 11234566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 144 ~~~~~Sa~~ 152 (170)
T 1ek0_A 144 LFFETSAKT 152 (170)
T ss_dssp EEEECCTTT
T ss_pred EEEEEeCCC
Confidence 776666554
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.07 E-value=9.4e-10 Score=90.63 Aligned_cols=138 Identities=9% Similarity=-0.005 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++..... .. ..+++.........+ +|. .+.++||| |..+.. .....
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~~ 74 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFND-KH-ITTLGASFLTKKLNI-GGKRVNLAIWDTA---GQERFH-----------ALGPI 74 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCCS-SC-CCCCSCEEEEEEEES-SSCEEEEEEEECC---CC------------------CC
T ss_pred ECcCCCCHHHHHHHHHcCCCCc-CC-CCccceEEEEEEEEE-CCEEEEEEEEECC---CcHhhh-----------hhHHH
Confidence 6999999999999999876322 21 122333333344455 664 67788999 853211 11223
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+....+. ...++||+|+.|.......+ ....+.+.+..+.
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 143 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVS---------IQEAESYAESVGA 143 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence 4578999999999873322121 2233334444332 35789999999976431111 1245667777777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 144 ~~~~~Sa~~ 152 (170)
T 1z08_A 144 KHYHTSAKQ 152 (170)
T ss_dssp EEEEEBTTT
T ss_pred eEEEecCCC
Confidence 777666554
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.07 E-value=1.6e-10 Score=98.25 Aligned_cols=111 Identities=13% Similarity=-0.017 Sum_probs=73.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.++|...|.... ..|.........+ +|..+.++||| |..+... ......
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~-----------~~~~~~ 88 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMS---GQGRYRN-----------LWEHYY 88 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEEC---CSTTTGG-----------GGGGGG
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECC---CCHHHHH-----------HHHHHH
Confidence 6999999999999999988665432 2344555666677 89999999999 8654221 112334
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc----cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK----VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~----~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++.++-+- ..+..++..++... ....+|||+|+.|....
T Consensus 89 ~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRM--VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp GGCSEEEEEEETTCHHHH--HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred hcCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 678999999998733111 12223333333221 24579999999998654
No 49
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.07 E-value=1e-09 Score=92.48 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=86.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.|+|...+.+.. .++|.........+ +|..+.++||| |..+..... ..+.+..... ..
T Consensus 13 vG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~--~~~~~~~~~~-~~ 83 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLP---GVYSLTANS--IDEIIARDYI-IN 83 (188)
T ss_dssp ECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECC---CCSCCSSSS--HHHHHHHHHH-HH
T ss_pred ECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECC---CcCcccccc--HHHHHHHHHH-hc
Confidence 6999999999999999987655433 24565666667777 89999999999 987543211 1112222111 11
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV 162 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~ 162 (307)
.++|++++|++.. .+ +. ...++..+.. .-..+|||+|+.|.... . -+ ...+..+.+.++-.|+
T Consensus 84 ~~~~~~i~v~d~~-~~-~~---~~~~~~~~~~--~~~piilv~nK~Dl~~~--~----~~----~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 84 EKPDLVVNIVDAT-AL-ER---NLYLTLQLME--MGANLLLALNKMDLAKS--L----GI----EIDVDKLEKILGVKVV 146 (188)
T ss_dssp HCCSEEEEEEEGG-GH-HH---HHHHHHHHHT--TTCCEEEEEECHHHHHH--T----TC----CCCHHHHHHHHTSCEE
T ss_pred cCCCEEEEEecch-hH-HH---HHHHHHHHHh--cCCCEEEEEEhhhcccc--c----cc----hHHHHHHHHHhCCCeE
Confidence 3589999999876 33 11 2223333222 23468889998885432 1 11 1246777777777777
Q ss_pred EEcCCC
Q 044972 163 LFDNKT 168 (307)
Q Consensus 163 ~fnNk~ 168 (307)
....++
T Consensus 147 ~~Sa~~ 152 (188)
T 2wjg_A 147 PLSAAK 152 (188)
T ss_dssp ECBGGG
T ss_pred EEEecC
Confidence 665443
No 50
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.06 E-value=1.8e-09 Score=89.01 Aligned_cols=110 Identities=12% Similarity=-0.046 Sum_probs=73.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.+++.. |.. ...|.........+ ++..+.++||| |..+.. ......
T Consensus 12 v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~~~-----------~~~~~~ 71 (171)
T 1upt_A 12 ILGLDGAGKTTILYRLQVGE-VVT----TIPTIGFNVETVTY-KNLKFQVWDLG---GLTSIR-----------PYWRCY 71 (171)
T ss_dssp EECSTTSSHHHHHHHHHHSS-CCC----CCCCSSEEEEEEEE-TTEEEEEEEEC---CCGGGG-----------GGGGGG
T ss_pred EECCCCCCHHHHHHHHhcCC-CCC----cCCcCccceEEEEE-CCEEEEEEECC---CChhhh-----------HHHHHH
Confidence 36999999999999999876 322 12244455566677 89999999999 874321 112234
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|||+++.++-+-.+ ...++..++... .-.+++||+|+.|....
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 578999999999874422221 223344433321 34589999999997654
No 51
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.06 E-value=1.6e-09 Score=102.97 Aligned_cols=120 Identities=16% Similarity=0.065 Sum_probs=79.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l 80 (307)
.+|.|||||||++|.++|....... ....|.......... ++..+.++||| |+.+..... ..+.. ..+..
T Consensus 172 lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~~~~~~~---~~~~~ 242 (357)
T 2e87_A 172 IAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTP---GLLDRPISERNEIEK---QAILA 242 (357)
T ss_dssp EECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECT---TTSSSCSTTSCHHHH---HHHHG
T ss_pred EECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCC---CccccchhhhhHHHH---HHHHH
Confidence 3799999999999999998733222 223466666666666 78999999999 986643211 11111 12222
Q ss_pred cCCCCeEEEEEEeCCCC--CCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNR--FSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~R--fT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+|++|||+++.+. ++.++ ...+..+...++ ...+|||+|+.|....
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE 295 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence 33468999999997632 34443 456667777664 4678999999997653
No 52
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.06 E-value=1.7e-09 Score=88.75 Aligned_cols=109 Identities=10% Similarity=-0.056 Sum_probs=71.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.. |... ..|.........+ ++..+.++||| |..+. ........
T Consensus 6 ~G~~~~GKssl~~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~-----------~~~~~~~~ 65 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNISFTVWDVG---GQDKI-----------RPLWRHYF 65 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHC-SSCC----CCCSSCCEEEEEC-SSCEEEEEECC---CCGGG-----------HHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHcCC-cCcc----cCcCceeEEEEEE-CCEEEEEEEcC---CChhh-----------HHHHHHHh
Confidence 6999999999999999865 4322 1243444445566 78899999999 97431 11122345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
++.|++|||+++.++-+- .....++..++... .-..++||.|+.|....
T Consensus 66 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 789999999998743221 12334455444332 23578999999997654
No 53
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.06 E-value=6.2e-10 Score=107.76 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=81.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.|||||||++|.|+|.++..+.. ..+|..+..+...+ +|.++.+|||| ||.+.......+...+...+
T Consensus 77 ivG~PNvGKSTL~n~Lt~~~~~v~~~--pftT~~~~~g~~~~-~~~~i~l~D~p---Gl~~~a~~~~~~g~~~l~~i--- 147 (376)
T 4a9a_A 77 FVGFPSVGKSTLLSKLTGTESEAAEY--EFTTLVTVPGVIRY-KGAKIQMLDLP---GIIDGAKDGRGRGKQVIAVA--- 147 (376)
T ss_dssp EECCCCHHHHHHHHHHHSBCCCGGGT--CSSCCCEEEEEEEE-TTEEEEEEECG---GGCCC-----CHHHHHHHHH---
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCC--CCceeeeeeEEEEe-CCcEEEEEeCC---CccCCchhhhHHHHHHHHHH---
Confidence 37999999999999999988655433 35788899999999 99999999999 99764322222223332222
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC-CeEEEEEecCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF-DYMIVVFTRGDE 130 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~-~~~IVLfT~~D~ 130 (307)
...|++|+|+++.... .+...+..-...+|.... +..+|++++.|.
T Consensus 148 -~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 -RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp -HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred -HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 2368999999876222 344455555566776643 467888998885
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.05 E-value=1.7e-09 Score=91.58 Aligned_cols=139 Identities=12% Similarity=-0.004 Sum_probs=85.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++....... ....|.........+ +| ..+.++||| |....... ..
T Consensus 21 v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~ 83 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTA---GQERFRTI-----------TS 83 (196)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGCTT-----------HH
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECC---CcHhhhhh-----------HH
Confidence 4799999999999999987643322 223444455555667 77 478999999 85432211 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-+. ...+..+...... -..+|||+|+.|..... .+ .......+....+
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~ 152 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKK--VV-------DYTTAKEFADSLG 152 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTC--CS-------CHHHHHHHHHHTT
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccccc--cc-------CHHHHHHHHHHcC
Confidence 22367899999999873222111 2233334333322 35789999999976541 11 1123566677777
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+...-++
T Consensus 153 ~~~~~~Sa~~ 162 (196)
T 3tkl_A 153 IPFLETSAKN 162 (196)
T ss_dssp CCEEEECTTT
T ss_pred CcEEEEeCCC
Confidence 7787776554
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.05 E-value=3.3e-10 Score=93.16 Aligned_cols=139 Identities=10% Similarity=-0.045 Sum_probs=79.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.++|..... ...+ ....+.......+ ++ ..+.++||| |+.+... + ..
T Consensus 11 v~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~--------~---~~ 73 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDSFDP-NINP-TIGASFMTKTVQY-QNELHKFLIWDTA---GLERFRA--------L---AP 73 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCT-TCCC-CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG--------G---TH
T ss_pred EECcCCCCHHHHHHHHHcCCCCC-CCCC-ceeEEEEEEEEEE-CCeEEEEEEEcCC---Cchhhhc--------c---cH
Confidence 36999999999999999986332 2111 1112222333444 44 588999999 9743211 1 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|+|+++.++.+-++ ...+..+..... ....++||.|+.|..... .+ .......+....+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~ 142 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR--EV-------MERDAKDYADSIH 142 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHTT
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc--cc-------CHHHHHHHHHHcC
Confidence 12357899999999874332222 223333333211 234688889999976431 11 1123456666667
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
..|+..+-++
T Consensus 143 ~~~~~~Sa~~ 152 (170)
T 1z0j_A 143 AIFVETSAKN 152 (170)
T ss_dssp CEEEECBTTT
T ss_pred CEEEEEeCCC
Confidence 6666655544
No 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.04 E-value=1.5e-09 Score=92.41 Aligned_cols=139 Identities=12% Similarity=-0.034 Sum_probs=58.6
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCc--eeEEEEEEEeCC----eEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTK--TCEMQRTMLKDG----QVVNVIDTPAIARLFDSSADFEFVSKEIV 75 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~--~c~~~~~~~~~G----r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~ 75 (307)
+|.+||||||++|.+++.+ .|.... ..|. ........+ +| ..+.|+||| |..+ ..
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~---G~~~-----------~~ 87 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDY---AMTSGVEVVVAPVTI-PDTTVSVELFLLDTA---GSDL-----------YK 87 (208)
T ss_dssp C-------------------------------------CEEEEC-TTSSEEEEEEEEETT---TTHH-----------HH
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCC---CCccceEEEEEEEEE-CCcccEEEEEEEECC---CcHH-----------HH
Confidence 7999999999999999873 244322 1222 233444556 64 489999999 8621 11
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCC-CCcccHHHhcCCCCCchHHH
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELE-DNDETLEDYLGPECPKPLKE 152 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~-~~~~sie~yl~~~~~~~Lk~ 152 (307)
........+.|++|||+++.++.+-+. ...+..+....+. .....+|||+|+.|... .. . + ....++.
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--~----v---~~~~~~~ 158 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH--Q----V---RLDMAQD 158 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------C----C---CHHHHHH
T ss_pred HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--c----C---CHHHHHH
Confidence 223345678999999999873322121 2233333333221 12457999999999765 21 1 1 1234567
Q ss_pred HHHhcCCeEEEEcCCC
Q 044972 153 ILQLCDNRRVLFDNKT 168 (307)
Q Consensus 153 Li~~Cg~R~~~fnNk~ 168 (307)
+.+..+-.|+..+.++
T Consensus 159 ~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 159 WATTNTLDFFDVSANP 174 (208)
T ss_dssp HHHHTTCEEEECCC--
T ss_pred HHHHcCCEEEEeccCC
Confidence 7777776666555443
No 57
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=3.6e-10 Score=92.95 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=77.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.++|........+..+.+ ....... ++ ..+.++||| |..+.. .+.. .
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~~~Dt~---G~~~~~----~~~~-------~ 70 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISC-DKSICTLQITDTT---GSHQFP----AMQR-------L 70 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEE-TTEEEEEEEEECC---SCSSCH----HHHH-------H
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcccc---EEEEEEE-CCEEEEEEEEECC---CchhhH----HHHH-------H
Confidence 6999999999999999876322211111111 1122233 44 368999999 975421 1111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++.+-+ ....+..+....+...-.+++||+|+.|..... .+. ......+....+-
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~-------~~~~~~~~~~~~~ 141 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQ-------SSEAEALARTWKC 141 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSC-------HHHHHHHHHHHTC
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccC-------HHHHHHHHHHhCC
Confidence 123579999999987432222 233444555554433356799999999976431 110 1223455555665
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+-++
T Consensus 142 ~~~~~Sa~~ 150 (172)
T 2erx_A 142 AFMETSAKL 150 (172)
T ss_dssp EEEECBTTT
T ss_pred eEEEecCCC
Confidence 665555443
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.03 E-value=1.9e-09 Score=92.64 Aligned_cols=137 Identities=7% Similarity=-0.063 Sum_probs=82.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.++|.+... . ...+++.........+ +| ..+.++||| |..+.... ...
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 88 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKFNP-S-FITTIGIDFKIKTVDI-NGKKVKLQLWDTA---GQERFRTI-----------TTA 88 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCC-S-SSCCCSCCEEEEEEEE-TTEEEEEEEECCT---TGGGGTCC-----------CHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCc-c-cCCcccceEEEEEEEE-CCEEEEEEEEeCC---CcHHHHHH-----------HHH
Confidence 6999999999999999876322 1 1223444555556667 77 579999999 86432211 011
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++..+.+-+. ...+..+....+ ...++|||+|+.|..... .+ ......+....+-
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~ 156 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRV-VT---------ADQGEALAKELGI 156 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCC-SC---------HHHHHHHHHHHTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc-cC---------HHHHHHHHHHcCC
Confidence 2357899999999863222111 223334444332 135789999999973221 11 1234556666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 157 ~~~~~Sa~~ 165 (213)
T 3cph_A 157 PFIESSAKN 165 (213)
T ss_dssp CEEECBTTT
T ss_pred EEEEEeCCC
Confidence 666555443
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.03 E-value=2.7e-09 Score=87.11 Aligned_cols=138 Identities=13% Similarity=0.017 Sum_probs=78.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. .+. . .
T Consensus 10 ~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~----~~~---~----~ 71 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIR---D----N 71 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---C---CH----HHH---H----H
T ss_pred ECCCCCCHHHHHHHHHhCc-cCCCCC--CCcceEEEEEEEE-CCEEEEEEEEECC---CcchhH----HHH---H----H
Confidence 6999999999999999876 432221 2222222333455 664 78999999 964321 111 1 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++-+-+. ...+..+..... ....+++||+|+.|.......+ ....+.+.+..+-
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 141 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRADQWNV 141 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSC---------HHHHHHHHHHHTC
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccC---------HHHHHHHHHHcCC
Confidence 1235899999999873222111 222333333322 1245799999999976431111 1235566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 142 ~~~~~Sa~~ 150 (168)
T 1u8z_A 142 NYVETSAKT 150 (168)
T ss_dssp EEEECCTTT
T ss_pred eEEEeCCCC
Confidence 666655544
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.03 E-value=5e-09 Score=88.54 Aligned_cols=137 Identities=13% Similarity=0.056 Sum_probs=77.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.... .+.+.........+ +|. .+.|+||| |..+.. .....
T Consensus 27 vG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~ 88 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNH-FVDEY--DPTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYS-----------AMRDQ 88 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSS-CCSCC--CTTCCEEEEEEEEE-TTEEEEEEEEECC---C---------------------
T ss_pred ECcCCCCHHHHHHHHHcCC-Ccccc--CCccceEEEEEEEE-CCEEEEEEEEECC---ChHHHH-----------HHHHH
Confidence 6999999999999999875 43221 12222333334455 665 48999999 853211 11223
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++++|+++.++-+-++ ...+..+..... ..-..++||+|+.|..... .+ ...++.+.+..+-
T Consensus 89 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~ 157 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VD---------TKQAHELAKSYGI 157 (190)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SC---------HHHHHHHHHHHTC
T ss_pred hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CC---------HHHHHHHHHHcCC
Confidence 4568999999999873322222 222333333322 1235789999999976531 11 1245666666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 158 ~~~~~Sa~~ 166 (190)
T 3con_A 158 PFIETSAKT 166 (190)
T ss_dssp CEEECCTTT
T ss_pred eEEEEeCCC
Confidence 665554443
No 61
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.03 E-value=9.4e-10 Score=91.20 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=79.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++..... ... ...+.........+ ++ ..+.++||| |..+.. .+ .. .
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~~-~~~-~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~---~~----~ 83 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFMA-DCP-HTIGVEFGTRIIEV-SGQKIKLQIWDTA---GQERFR----AV---TR----S 83 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCS-SCT-TSCCCCEEEEEEEE-TTEEEEEEEEECT---TGGGTC----HH---HH----H
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-CCC-CccceEEEEEEEEE-CCeEEEEEEEECC---CChHhh----hh---HH----H
Confidence 6999999999999999876432 211 12222233334445 55 478999999 854321 11 11 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-++ ...+..+...... ...++||+|+.|.......+ ...++.+.+..+-
T Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 152 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVT---------YEEAKQFAEENGL 152 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence 2246899999999874322222 1223334433222 35799999999975431111 1245666777676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 153 ~~~~~Sa~~ 161 (179)
T 1z0f_A 153 LFLEASAKT 161 (179)
T ss_dssp EEEECCTTT
T ss_pred EEEEEeCCC
Confidence 666655443
No 62
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.03 E-value=1.4e-10 Score=117.20 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=74.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE-------------------------------------EEEEeC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ-------------------------------------RTMLKD 45 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~-------------------------------------~~~~~~ 45 (307)
+|.+||||||++|+|+|.+......+..+.|...... ...+ .
T Consensus 71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~-~ 149 (550)
T 2qpt_A 71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQL-P 149 (550)
T ss_dssp EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEEC-C
T ss_pred ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEec-c
Confidence 6999999999999999998652222333444221100 0011 1
Q ss_pred C---eEEEEEeCCCCCCCCCCCcCHHHHHHH--HHHHHHhcCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCC
Q 044972 46 G---QVVNVIDTPAIARLFDSSADFEFVSKE--IVKCIGMAKDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFD 119 (307)
Q Consensus 46 G---r~v~VIDTP~~~Gl~Dt~~~~~~i~~e--I~kcv~ls~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~ 119 (307)
+ ..+++|||| |+.+.... .+.+. +...+.....+.|++|+|+++.. .++.++...+..+.. .-.
T Consensus 150 ~~ll~~l~lIDTP---G~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~ 219 (550)
T 2qpt_A 150 NQVLESISIIDTP---GILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-----HED 219 (550)
T ss_dssp CHHHHHCEEEECC---CBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----CGG
T ss_pred ccccCCEEEEECc---CCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----cCC
Confidence 1 479999999 99863211 11100 11111122346899999999974 367777777666543 235
Q ss_pred eEEEEEecCCCCCCCcccHHHh
Q 044972 120 YMIVVFTRGDELEDNDETLEDY 141 (307)
Q Consensus 120 ~~IVLfT~~D~L~~~~~sie~y 141 (307)
.++||+|+.|.+.. ..+...
T Consensus 220 pvilVlNK~Dl~~~--~el~~~ 239 (550)
T 2qpt_A 220 KIRVVLNKADMVET--QQLMRV 239 (550)
T ss_dssp GEEEEEECGGGSCH--HHHHHH
T ss_pred CEEEEEECCCccCH--HHHHHH
Confidence 69999999998865 344443
No 63
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.1e-10 Score=96.26 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=68.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|++||||||++|.++|...... ......|.. ..+ .+..+.++||| |..+....... .+...
T Consensus 53 vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~-----~~~-~~~~~~l~Dt~---G~~~~~~~~~~-------~~~~~ 115 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSA-----ADY-DGSGVTLVDFP---GHVKLRYKLSD-------YLKTR 115 (193)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEET---TCCBSSCCHHH-------HHHHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCcc-cccCCCcee-----eee-cCCeEEEEECC---CCchHHHHHHH-------HHHhh
Confidence 369999999999999999763221 111111111 123 56789999999 98654322221 12222
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-----cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-----VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-----~~~~~IVLfT~~D~L~~ 133 (307)
.+.+|++|||+++. .-...-.....++..+++.. ...+++||+|+.|....
T Consensus 116 ~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 116 AKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 35689999999985 22222233445555554332 24679999999998765
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.02 E-value=7.4e-10 Score=90.85 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=78.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++........+ ..+.........+ + +..+.++||| |..+... + ..
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~~--------~---~~ 73 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKGQFHEFQES--TIGAAFLTQTVCL-DDTTVKFEIWDTA---GQERYHS--------L---AP 73 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG--------G---HH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCC--ccceEEEEEEEEE-CCEEEEEEEEeCC---CcHHhhh--------h---hH
Confidence 369999999999999998753322111 2222222333344 4 4589999999 8643211 1 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-+. ...+..+....++ ...++||.|+.|.......+ ......+....+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~ 142 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVD---------FQEAQSYADDNS 142 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccC---------HHHHHHHHHHcC
Confidence 22367899999999873322111 2223333333222 34678888999975431011 123456666666
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+....++
T Consensus 143 ~~~~~~Sa~~ 152 (170)
T 1r2q_A 143 LLFMETSAKT 152 (170)
T ss_dssp CEEEECCTTT
T ss_pred CeEEEEeCCC
Confidence 6666555544
No 65
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.02 E-value=2.7e-09 Score=89.51 Aligned_cols=138 Identities=10% Similarity=-0.050 Sum_probs=82.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++....... ...++.........+ +| ..+.++||| |..+. ......
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~-----------~~~~~~ 78 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTA---GQERF-----------RSVTRS 78 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG-----------HHHHHT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCC---CcHHH-----------HHHHHH
Confidence 699999999999999987633221 122333344445556 66 588999999 85321 112334
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+..... ....++||+|+.|.......+ ......+....+-
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 147 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVT---------FLEASRFAQENEL 147 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence 5678999999999873222111 122333333322 245789999999975431011 1234556666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 148 ~~~~~Sa~~ 156 (186)
T 2bme_A 148 MFLETSALT 156 (186)
T ss_dssp EEEECCTTT
T ss_pred EEEEecCCC
Confidence 666555443
No 66
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.02 E-value=2.5e-09 Score=90.72 Aligned_cols=112 Identities=11% Similarity=-0.016 Sum_probs=70.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
.+|.+||||||++|.+++........ ..|.......... .+..+.++||| |..+.. ......
T Consensus 22 v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~-----------~~~~~~ 83 (199)
T 4bas_A 22 MCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMG---GAKKFR-----------GLWETY 83 (199)
T ss_dssp EECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEEC---CSGGGG-----------GGGGGG
T ss_pred EECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECC---CCHhHH-----------HHHHHH
Confidence 36999999999999999987433122 2233344444556 88999999999 874321 111234
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc---------cCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK---------VFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~---------~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|||+++.++-+-+ .+..++..++... .-..+|||.|+.|....
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLC--VVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HhcCCEEEEEEECCcHHHHH--HHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 57899999999987432211 1223333333221 14579999999998765
No 67
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.02 E-value=1.1e-10 Score=116.21 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC-CCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF-DSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~-Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.|||||||++|.++|.+. +.+. ..+.|.........+ +|..++++||| |+. ++....+... +.+ ...
T Consensus 249 vG~pnvGKSSLln~L~~~~~a~vs~--~~gTT~d~~~~~i~~-~g~~~~l~DTa---G~~~~~~~~ve~~g--i~~-~~~ 319 (482)
T 1xzp_A 249 VGKPNVGKSTLLNRLLNEDRAIVTD--IPGTTRDVISEEIVI-RGILFRIVDTA---GVRSETNDLVERLG--IER-TLQ 319 (482)
T ss_dssp ECCHHHHTCHHHHHHHHHTBCCCCC--SSCCSSCSCCEEEEE-TTEEEEEEESS---CCCSSCCTTCCCCC--HHH-HHH
T ss_pred ECcCCCcHHHHHHHHHCCCCCccCC--CCCeeeeeEEEEEec-CCeEEEEEECC---CccccchhhHHHHH--HHH-HHH
Confidence 79999999999999999864 3332 234566676677788 99999999999 987 5432111100 000 001
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|+|+++.+..+.++...++.+ . ...+|||+|+.|...
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 12358999999998767787776554432 1 457999999999754
No 68
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.02 E-value=3.7e-09 Score=86.64 Aligned_cols=137 Identities=13% Similarity=-0.029 Sum_probs=80.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |.... ..+++.........+ ++. .+.++||| |..+.... ...
T Consensus 11 ~G~~~~GKssl~~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 73 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGI-FTKDY-KKTIGVDFLERQIQV-NDEDVRLMLWDTA---GQEEFDAI-----------TKA 73 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCC-CCCCS-SCCCSSSEEEEEEEE-TTEEEEEEEECCT---TGGGTTCC-----------CHH
T ss_pred ECcCCCCHHHHHHHHHcCC-CCCCC-CCceEEEEEEEEEEE-CCEEEEEEEEcCC---CcHhHHHH-----------HHH
Confidence 6999999999999999875 32221 122333444445555 654 88999999 85432211 011
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++.+-++ ...+..+.... ...+++||+|+.|..... . + ....++.+.+..+-
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~ 141 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDS--C----I---KNEEAEGLAKRLKL 141 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGC--S----S---CHHHHHHHHHHHTC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccc--c----c---CHHHHHHHHHHcCC
Confidence 2357899999999873222111 12233333322 346799999999976431 1 1 12235666677776
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+-++
T Consensus 142 ~~~~~Sa~~ 150 (168)
T 1z2a_A 142 RFYRTSVKE 150 (168)
T ss_dssp EEEECBTTT
T ss_pred eEEEEecCC
Confidence 666555443
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.01 E-value=3.4e-09 Score=86.13 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=79.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ ++. .+.++||| |..+.. .+...
T Consensus 9 ~G~~~~GKssl~~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~----~~~~~------- 70 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNH-FVDECD--PTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYS----AMRDQ------- 70 (166)
T ss_dssp EESTTSSHHHHHHHHHHSS-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CCSSCC----HHHHH-------
T ss_pred ECCCCCCHHHHHHHHHhCc-CccccC--CccceEEEEEEEE-CCEEEEEEEEECC---Cchhhh----HHHHH-------
Confidence 6999999999999999875 332221 2222222333445 654 57889999 965432 11111
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++++|+++.++-+-++ ...+..+..... ..-.+++||+|+.|..... . ....++.+.+..+-
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~-~---------~~~~~~~~~~~~~~ 139 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART-V---------ESRQAQDLARSYGI 139 (166)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-S---------CHHHHHHHHHHHTC
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc-c---------CHHHHHHHHHHcCC
Confidence 1235789999999863322121 222333333322 2246789999999976531 1 12235566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 140 ~~~~~Sa~~ 148 (166)
T 2ce2_X 140 PYIETSAKT 148 (166)
T ss_dssp CEEEECTTT
T ss_pred eEEEecCCC
Confidence 666665544
No 70
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.01 E-value=1.6e-09 Score=92.79 Aligned_cols=138 Identities=8% Similarity=-0.058 Sum_probs=80.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++........+ .++.+.......+ ++ ..+.++||| |..+. ......
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~-----------~~~~~~ 76 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTIYR-NDKRIKLQIWDTA---GLERY-----------RTITTA 76 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSCCCC--CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG-----------HHHHHT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCC--ccceeEEEEEEEE-CCeEEEEEEEECC---Cchhh-----------cchHHH
Confidence 69999999999999999863322111 2222233333444 54 488999999 97421 111233
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+. ...+..+.... .....++||+|+.|..... .+ ....++.+.+.++-
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDER--VV-------SSERGRQLADHLGF 145 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSC--CS-------CHHHHHHHHHHHTC
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCccc--cc-------CHHHHHHHHHHCCC
Confidence 4568899999999873322111 11222232221 1245789999999976531 11 11245666677776
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 146 ~~~~~Sa~~ 154 (203)
T 1zbd_A 146 EFFEASAKD 154 (203)
T ss_dssp EEEECBTTT
T ss_pred eEEEEECCC
Confidence 666555443
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.01 E-value=8.8e-09 Score=88.43 Aligned_cols=138 Identities=12% Similarity=-0.028 Sum_probs=82.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++..... .. ...++.........+ +|. .+.++||| |..+.... ...
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 76 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYTN-DY-ISTIGVDFKIKTVEL-DGKTVKLQIWDTA---GQERFRTI-----------TSS 76 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCCT-TC-CCSSCCCEEEEEEEE-TTEEEEEEEECCT---TTTTTTCC-----------CGG
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CC-CCcccceeEEEEEEE-CCEEEEEEEEeCC---ChHHHHHH-----------HHH
Confidence 6999999999999999876432 21 223333444445566 764 89999999 86442211 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+....+ ....++||+|+.|.......+ ......+....+-
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 145 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVE---------YDVAKEFADANKM 145 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccC---------HHHHHHHHHHcCC
Confidence 3468899999999873322222 112333333322 245789999999986541111 1234556666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 146 ~~~~~Sa~~ 154 (206)
T 2bcg_Y 146 PFLETSALD 154 (206)
T ss_dssp CEEECCTTT
T ss_pred eEEEEeCCC
Confidence 666555443
No 72
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.00 E-value=1.8e-09 Score=103.67 Aligned_cols=121 Identities=12% Similarity=-0.009 Sum_probs=72.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|+|||||||++|.|+|.....+.. ...|.........+ +|..+.++||| |+... .+...+ +.+.. .....
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~---G~i~~-lp~~lv-e~f~~-tl~~~ 255 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTV---GFIRG-IPPQIV-DAFFV-TLSEA 255 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECC---CBCSS-CCGGGH-HHHHH-HHHGG
T ss_pred ECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCC---Cchhc-CCHHHH-HHHHH-HHHHH
Confidence 6999999999999999987533222 23455555667778 89999999999 97431 122111 12222 22234
Q ss_pred CCCeEEEEEEeCCCCC--CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRF--SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~Rf--T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...|++|+|+++.... ..+....+..+...+|.. -..+|+|+++.|.+..
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS-GKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-SCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC-CCCEEEEEECCCCCCc
Confidence 5789999999986333 122222233333344432 3469999999998764
No 73
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.00 E-value=2.1e-09 Score=88.28 Aligned_cols=137 Identities=7% Similarity=-0.046 Sum_probs=78.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|+++|.+..... ..+.+.........+ +| ..+.++||| |..+..... ..
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~~~~-----------~~ 71 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTA---GQERFRTIT-----------TA 71 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCT---TGGGTSCCC-----------HH
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCC---CChhhhhhH-----------HH
Confidence 699999999999999987632211 223333444445556 65 378899999 864322110 11
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+....+. ...++||+|+.|..... .+ ......+.+..+-
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~ 139 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VT---------ADQGEALAKELGI 139 (170)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCC-SC---------HHHHHHHHHHHTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCc-cC---------HHHHHHHHHHcCC
Confidence 2357899999999873322111 2233334443322 45789999999973321 11 1234566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 140 ~~~~~Sa~~ 148 (170)
T 1g16_A 140 PFIESSAKN 148 (170)
T ss_dssp CEEECBTTT
T ss_pred eEEEEECCC
Confidence 666665544
No 74
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.00 E-value=3.8e-09 Score=89.77 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=70.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.+ |.... ..|.........+ .+..+.++||| |..+ ..... ....
T Consensus 28 ~G~~~~GKSsli~~l~~~~-~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~-------~~~~~----~~~~ 88 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQ-FNEDM---IPTVGFNMRKITK-GNVTIKLWDIG---GQPR-------FRSMW----ERYC 88 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCCSC---CCCCSEEEEEEEE-TTEEEEEEEEC---CSHH-------HHTTH----HHHH
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCcc---CCCCceeEEEEEe-CCEEEEEEECC---CCHh-------HHHHH----HHHH
Confidence 6999999999999999876 32221 2233344444566 88999999999 8532 11111 1223
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++.++-+- .....++..++.. .....+|||+|+.|....
T Consensus 89 ~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 678999999998733221 2233444444432 134579999999997654
No 75
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.99 E-value=2e-09 Score=90.10 Aligned_cols=109 Identities=12% Similarity=-0.054 Sum_probs=69.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.+... .. .|.........+ ++..+.++||| |..+.... .....
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~--~~---~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-----------~~~~~ 83 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIGEVVT--TK---PTIGFNVETLSY-KNLKLNVWDLG---GQTSIRPY-----------WRCYY 83 (183)
T ss_dssp EEETTSSHHHHHHHTCCSEEEE--EC---SSTTCCEEEEEE-TTEEEEEEEEC-------CCTT-----------GGGTT
T ss_pred ECCCCCCHHHHHHHHhcCCcCc--cC---CcCccceEEEEE-CCEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence 6999999999999999876422 11 122233445567 88999999999 87543211 12345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|+|+++.++-+-+ ....++..+... .....++||.|+.|....
T Consensus 84 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 6899999999987443322 233445554433 234679999999997653
No 76
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.99 E-value=8.9e-10 Score=93.01 Aligned_cols=109 Identities=9% Similarity=-0.044 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.+..... + |.........+ ++..+.++||| |..+... ......
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~-----------~~~~~~ 86 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIG---GQESLRS-----------SWNTYY 86 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSCEEEE-C----CSSSSCEEEEE-TTEEEEEEEES---SSGGGTC-----------GGGGGG
T ss_pred ECCCCCCHHHHHHHHhcCCCCccC-C----cCceeeEEEEE-CCEEEEEEECC---CCHhHHH-----------HHHHHh
Confidence 699999999999999998742211 1 11222344567 89999999999 8743211 012334
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++.++-+-++ +..++..+... ..-..+|||.|+.|....
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 68899999999875433222 22334444332 134679999999997653
No 77
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.98 E-value=1.8e-09 Score=89.41 Aligned_cols=138 Identities=10% Similarity=-0.035 Sum_probs=81.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++..... .. ...++.........+ +|. .+.++||| |..+... + .. .
T Consensus 20 ~G~~~~GKssli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~----~---~~----~ 82 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFDN-TY-QATIGIDFLSKTMYL-EDRTVRLQLWDTA---GQERFRS----L---IP----S 82 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCCS-SC-CCCCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG----G---SH----H
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-CC-CCceeeEEEEEEEEE-CCeEEEEEEEECC---CcHHHHH----H---HH----H
Confidence 6999999999999999875332 21 223343444555566 664 78999999 8543211 0 11 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+ -...+..+....+ ....++||+|+.|.......+ ......+....+-
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 151 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVS---------TEEGERKAKELNV 151 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSC---------HHHHHHHHHHHTC
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCC---------HHHHHHHHHHcCC
Confidence 124689999999986322211 1222333333322 235789999999976431011 1234455666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+....++
T Consensus 152 ~~~~~Sa~~ 160 (179)
T 2y8e_A 152 MFIETSAKA 160 (179)
T ss_dssp EEEEEBTTT
T ss_pred eEEEEeCCC
Confidence 777766554
No 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.98 E-value=4.3e-09 Score=89.68 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=80.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. .+.. .
T Consensus 20 ~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~-------~ 81 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIRD-------N 81 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCTTCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH-------H
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCCC--CccceEEEEEEEE-CCEEEEEEEEcCC---ChhhhH----HHHH-------H
Confidence 6999999999999999876 433222 2222222344456 664 78999999 965421 1111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+. ...+..+..... ..-..+|||+|+.|.......+ ...+..+.+..+-
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 151 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV 151 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHHTC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccccccc---------HHHHHHHHHHhCC
Confidence 1235899999999873221111 122233333322 1245789999999976431111 1235566666677
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 152 ~~~~~Sa~~ 160 (206)
T 2bov_A 152 NYVETSAKT 160 (206)
T ss_dssp EEEEECTTT
T ss_pred eEEEEeCCC
Confidence 777766654
No 79
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.98 E-value=4.8e-09 Score=88.92 Aligned_cols=138 Identities=9% Similarity=-0.085 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++........+ .++.+.......+ ++ ..+.++||| |..+.... ...
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 90 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTVYR-HDKRIKLQIWDTA---GQERYRTI-----------TTA 90 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCC--CCCCEEEEEEEEE-TTEEEEEEEEECC---SCCSSCCS-----------GGG
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCC--ceeEEEEEEEEEE-CCeEEEEEEEeCC---CcHHHhhh-----------HHH
Confidence 69999999999999998763322111 2222333333344 44 488999999 86443211 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+. ...+..+.... .....++||+|+.|..... . + ....++.+.+..+-
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDER--V----V---PAEDGRRLADDLGF 159 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccc--C----C---CHHHHHHHHHHcCC
Confidence 4568999999999863322211 12223333321 1245789999999976431 1 1 11245667777776
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 160 ~~~~~Sa~~ 168 (189)
T 2gf9_A 160 EFFEASAKE 168 (189)
T ss_dssp EEEECBTTT
T ss_pred eEEEEECCC
Confidence 676665544
No 80
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.98 E-value=4.1e-09 Score=89.44 Aligned_cols=138 Identities=12% Similarity=-0.015 Sum_probs=79.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++........ .+++.........+ ++ ..+.++||| |..+..... ..
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~ 93 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVML-GTAAVKAQIWDTA---GLERYRAIT-----------SA 93 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEE-TTEEEEEEEEEES---CCCTTCTTH-----------HH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEeCC---Cchhhhhhh-----------HH
Confidence 6999999999999999876432211 12222222223333 33 578999999 975532111 11
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-. .+..++..+... .....++||+|+.|........ ....+.+....+-
T Consensus 94 ~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 162 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP---------TEEARMFAENNGL 162 (193)
T ss_dssp HHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC---------HHHHHHHHHHcCC
Confidence 235789999999987332211 122333333222 1345789999999976431011 1234566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 163 ~~~~~Sa~~ 171 (193)
T 2oil_A 163 LFLETSALD 171 (193)
T ss_dssp EEEEECTTT
T ss_pred EEEEEeCCC
Confidence 676665543
No 81
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=2.7e-09 Score=104.91 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=76.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCHH----HHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADFE----FVSKEI 74 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~~----~i~~eI 74 (307)
.+|++||||||++|+|+|...........+.+.........+. .+ ..++|+||| |+.+. .+.. .+...|
T Consensus 47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~---~~g~~-~~~~~~~~~i~~~i 122 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV---GFGDQ-INKEDSYKPIVEFI 122 (427)
T ss_dssp EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEE---CCCC--CCHHHHSHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhh---hhhhc-cccchhhhHHHHHH
Confidence 4799999999999999998643211111111111111111121 22 278999999 88763 2221 122222
Q ss_pred H----HHHHhc---------CC--CCeE-EEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccH
Q 044972 75 V----KCIGMA---------KD--GIHA-VLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETL 138 (307)
Q Consensus 75 ~----kcv~ls---------~p--Gpha-~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~si 138 (307)
. ..+... .+ .+|+ ++||++.+..++..|..+++.|. ...++|+|++.+|.|.. ..+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~--~E~ 194 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK--SEL 194 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH--HHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch--HHH
Confidence 2 222111 12 2455 66677776678888876666553 35689999999999976 334
Q ss_pred HHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972 139 EDYLGPECPKPLKEILQLCDNRRVLFD 165 (307)
Q Consensus 139 e~yl~~~~~~~Lk~Li~~Cg~R~~~fn 165 (307)
..+.. .+++-+...|-.++.|.
T Consensus 195 ~~l~~-----~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 195 TKFKI-----KITSELVSNGVQIYQFP 216 (427)
T ss_dssp HHHHH-----HHHHHHBTTBCCCCCCC
T ss_pred HHHHH-----HHHHHHHHcCCcEEecC
Confidence 44332 23443444455555554
No 82
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.7e-09 Score=89.97 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=78.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... ...+.........+ ++ ..+.++||| |..+..... ..
T Consensus 21 ~G~~~~GKssli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~ 83 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDT-FDPELA-ATIGVDFKVKTISV-DGNKAKLAIWDTA---GQERFRTLT-----------PS 83 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCTTCC-CCCSEEEEEEEEEE-TTEEEEEEEEEEC---SSGGGCCSH-----------HH
T ss_pred ECCCCCCHHHHHHHHHcCC-CCccCC-CccceEEEEEEEEE-CCeEEEEEEEeCC---Cchhhhhhh-----------HH
Confidence 6999999999999999876 332211 12222333334445 55 578899999 864322111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...+.|++|||+++.++.+-. .+..++..+... .....++||+|+.|..... .+ ......+.+..+
T Consensus 84 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~ 151 (195)
T 1x3s_A 84 YYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VD---------RNEGLKFARKHS 151 (195)
T ss_dssp HHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SC---------HHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cC---------HHHHHHHHHHcC
Confidence 235789999999986332211 122333333221 1245789999999974321 11 123456666667
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+....++
T Consensus 152 ~~~~~~Sa~~ 161 (195)
T 1x3s_A 152 MLFIEASAKT 161 (195)
T ss_dssp CEEEECCTTT
T ss_pred CEEEEecCCC
Confidence 6666655544
No 83
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.97 E-value=7.2e-09 Score=86.39 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=80.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ ++. .+.++||| |..+.. .+.. .
T Consensus 24 ~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~---~---- 85 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIRD---N---- 85 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CCCSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH---H----
T ss_pred ECCCCCCHHHHHHHHhhCC-CCCcCC--CccceEEEEEEEE-CCEEEEEEEEECC---CCcccH----HHHH---H----
Confidence 6999999999999999876 433221 2222222333455 664 78999999 965421 1111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++-+-+. ...+..+..... .....++||+|+.|.......+ ...++.+.+..+-
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 155 (187)
T 2a9k_A 86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV 155 (187)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccC---------HHHHHHHHHHcCC
Confidence 1235899999999873222111 222333443332 1245789999999975431011 1245666777777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 156 ~~~~~Sa~~ 164 (187)
T 2a9k_A 156 NYVETSAKT 164 (187)
T ss_dssp EEEECCTTT
T ss_pred eEEEeCCCC
Confidence 776666554
No 84
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=1.5e-09 Score=92.57 Aligned_cols=139 Identities=12% Similarity=-0.076 Sum_probs=79.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.+||||||++|.+++........+..+.| .......+. .+..+.++||| |..+... + ....
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~---G~~~~~~--------~---~~~~ 92 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNELHKFLIWDTA---GQERFHS--------L---APMY 92 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSSEEEEEEEEEC---CSGGGGG--------G---THHH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCEEEEEEEEcCC---CchhhHh--------h---hHHh
Confidence 6999999999999999876322111111222 222223331 34589999999 8543211 0 1112
Q ss_pred CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 82 KDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
..+.|++|||+++.++-+-+. ...+..+..... ....++||+|+.|.......+ ...++.+.+..+-.
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~~ 161 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVP---------LKDAKEYAESIGAI 161 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHTTTCE
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence 357899999999873322222 222333333221 245789999999975421011 13456677777777
Q ss_pred EEEEcCCC
Q 044972 161 RVLFDNKT 168 (307)
Q Consensus 161 ~~~fnNk~ 168 (307)
|+....++
T Consensus 162 ~~~~Sa~~ 169 (192)
T 2fg5_A 162 VVETSAKN 169 (192)
T ss_dssp EEECBTTT
T ss_pred EEEEeCCC
Confidence 76666554
No 85
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.96 E-value=3e-09 Score=88.38 Aligned_cols=114 Identities=13% Similarity=-0.007 Sum_probs=69.5
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.+++.. |.... ....+.........+ +|. .+.++||| |... ......
T Consensus 12 v~G~~~~GKSsli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-----------~~~~~~ 74 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTNK-FDTQL-FHTIGVEFLNKDLEV-DGHFVTMQIWDTA---GQER-----------FRSLRT 74 (177)
T ss_dssp EECCTTSSHHHHHHHHHHSC-CCC-----CCSEEEEEEEEEE-TTEEEEEEEEECC---CCGG-----------GHHHHG
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCC-CCceeeeEEEEEEEE-CCEEEEEEEEeCC---Cchh-----------hhhhHH
Confidence 37999999999999999875 32221 112233333445556 774 89999999 8532 111233
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|+|+++.++-+-+. ...+..+....+.. ...+++||.|+.|...
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 45678999999999873322221 22333344333321 3357899999999763
No 86
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.96 E-value=8.2e-09 Score=89.95 Aligned_cols=144 Identities=14% Similarity=0.014 Sum_probs=74.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. ....
T Consensus 39 vvG~~~vGKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~-----------~~~~ 100 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVFADGA-FPESYT--PTVFERYMVNLQV-KGKPVHLHIWDTA---GQDDYD-----------RLRP 100 (214)
T ss_dssp EEECTTSSHHHHHHHHHC--------C--CCCCEEEEEEEEE-TTEEEEEEEEEC-------------------------
T ss_pred EECcCCCCHHHHHHHHHcCC-CCCCCC--CccceeEEEEEEE-CCEEEEEEEEECC---Cchhhh-----------HHHH
Confidence 36999999999999999876 432221 2122222334455 665 78999999 853211 1112
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc-----CCCCCchHHH
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL-----GPECPKPLKE 152 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl-----~~~~~~~Lk~ 152 (307)
....+.|++|||+++.++-+-+.. ..+..+.... .-..+|||.|+.|.... ..+.+.+ ..-.......
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc--chhhhhhcccccCcccHHHHHH
Confidence 235689999999998732221111 1233333322 23578999999998765 3332222 1101234567
Q ss_pred HHHhcCC-eEEEEcCCC
Q 044972 153 ILQLCDN-RRVLFDNKT 168 (307)
Q Consensus 153 Li~~Cg~-R~~~fnNk~ 168 (307)
+.+..+. .|+...-++
T Consensus 176 ~~~~~~~~~~~~~SA~~ 192 (214)
T 2j1l_A 176 MARSVGAVAYLECSARL 192 (214)
T ss_dssp HHHHTTCSEEEECBTTT
T ss_pred HHHhcCCCEEEEecCCC
Confidence 7777776 666655543
No 87
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.95 E-value=5.5e-09 Score=89.23 Aligned_cols=111 Identities=15% Similarity=0.000 Sum_probs=66.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.|+||| |..+.... ..
T Consensus 25 ~~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~ 86 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYTTNG-YPTEYI--PTAFDNFSAVVSV-DGRPVRLQLCDTA---GQDEFDKL-----------RP 86 (201)
T ss_dssp EECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECC---CSTTCSSS-----------GG
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCC--CcccceeEEEEEE-CCEEEEEEEEECC---CCHHHHHH-----------hH
Confidence 36999999999999999876 654332 2222333334556 776 56699999 97543211 12
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|||+++.++-+-++. ..+..+....+ ...+|||.|+.|....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence 345689999999998743222221 23333443322 4578999999998754
No 88
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.95 E-value=5.7e-09 Score=88.28 Aligned_cols=109 Identities=13% Similarity=-0.014 Sum_probs=72.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.. |.... .|.........+ ++..+.++||| |..+.... .....
T Consensus 28 ~G~~~~GKssli~~l~~~~-~~~~~----~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~~~~~-----------~~~~~ 87 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLGD-VVTTV----PTVGVNLETLQY-KNISFEVWDLG---GQTGVRPY-----------WRCYF 87 (189)
T ss_dssp EEETTSSHHHHHHHTCCSC-CEEEC----SSTTCCEEEEEE-TTEEEEEEEEC---CSSSSCCC-----------CSSSS
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCcC----CCCceEEEEEEE-CCEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence 6999999999999998876 43221 233344555667 89999999999 87543211 11235
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.++|++|+|+++.++-+-++ +..++..++... .-..++||+|+.|....
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred hcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 68999999999874422222 233444444332 24579999999998654
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=8.3e-09 Score=87.28 Aligned_cols=109 Identities=9% Similarity=-0.030 Sum_probs=68.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.+++.+.... .+ |.........+ ++..+.++||| |..+..... ....
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~~-----------~~~~ 81 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIG---GQESLRSSW-----------NTYY 81 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECC---C----CGGG-----------HHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECC---CCHhHHHHH-----------HHHh
Confidence 69999999999999998764322 11 22233345567 89999999999 974322110 1123
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++.++-+-+. ...++..+... .....+|||.|+.|....
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 67999999999874433222 22333343332 134689999999997653
No 90
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.95 E-value=6.7e-09 Score=85.85 Aligned_cols=114 Identities=17% Similarity=0.040 Sum_probs=62.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.++|....... ...+. +.......+ +|. .+.++||| |...... ..+. ..
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~D~~---g~~~~~~------~~~~---~~ 73 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDLH-EQLGE--DVYERTLTV-DGEDTTLVVVDTW---EAEKLDK------SWSQ---ES 73 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-----C-CCSSS--SEEEEEEEE-TTEEEEEEEECCC----------------CHHH---HH
T ss_pred ECCCCccHHHHHHHHhcCCCcccc-Ccccc--ceeEEEEEE-CCEEEEEEEEecC---CCCccch------hhhH---Hh
Confidence 699999999999999998643321 22222 223344456 775 68899999 8753210 1111 23
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|+|+++.++-+-+. ...+..+..... ..-..+|||.|+.|....
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 4567899999999873322121 112222333221 123578999999997654
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.94 E-value=1.6e-08 Score=84.54 Aligned_cols=138 Identities=14% Similarity=0.030 Sum_probs=79.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ .+.........+ +| ..+.++||| |..+.... ...
T Consensus 12 ~G~~~~GKSsli~~l~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 73 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQ-FVDSYDP--TIENTFTKLITV-NGQEYHLQLVDTA---GQDEYSIF-----------PQT 73 (181)
T ss_dssp EESTTSSHHHHHHHHHHSS-CCSCCCT--TCCEEEEEEEEE-TTEEEEEEEEECC---CCCTTCCC-----------CGG
T ss_pred ECcCCCCHHHHHHHHHcCC-CCCCCCC--CccccEEEEEEE-CCEEEEEEEEeCC---CchhhhHH-----------HHH
Confidence 6999999999999999765 4433222 122222334455 77 466899999 86543211 113
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|+|+++.++-+-+. ...+..+...++. .-..++||.|+.|..... . + ....++.+.+..+.
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMER--V----I---SYEEGKALAESWNA 143 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC--C----S---CHHHHHHHHHHTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcc--e----e---cHHHHHHHHHHhCC
Confidence 3567999999999873221111 1122233333322 235789999999975441 1 1 12345677777777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 144 ~~~~~Sa~~ 152 (181)
T 3t5g_A 144 AFLESSAKE 152 (181)
T ss_dssp EEEECCTTS
T ss_pred cEEEEecCC
Confidence 666555443
No 92
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.94 E-value=3.8e-09 Score=88.56 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=61.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.... ..+++.........+ +| ..+.++||| |..+.. .....
T Consensus 14 ~G~~~~GKssl~~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~ 76 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDA-FNSTF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTA---GQERFR-----------TITTA 76 (183)
T ss_dssp ECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC-----------------------CCT
T ss_pred ECCCCCCHHHHHHHHHhCC-CCCCC-CCcccceeEEEEEEE-CCEEEEEEEEcCC---CChhhh-----------hhHHH
Confidence 6999999999999999765 33211 112233344445566 77 689999999 853211 11123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+....+ .-..++||.|+.|.......+ ...++.+.+..+-
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVS---------KERGEKLALDYGI 145 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSC---------HHHHHHHHHHHTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCC---------HHHHHHHHHHcCC
Confidence 4568999999999873322111 112223333222 235789999999976531011 1234566666676
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+...-+
T Consensus 146 ~~~~~Sa~ 153 (183)
T 2fu5_C 146 KFMETSAK 153 (183)
T ss_dssp EEEECCC-
T ss_pred eEEEEeCC
Confidence 66554443
No 93
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.93 E-value=4e-09 Score=89.43 Aligned_cols=140 Identities=14% Similarity=-0.018 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++....... ..+.+.........+ +| ..+.++||| |..+ ....+. ..
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~-------~~~~~~---~~ 89 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTA---GQER-------FRKSMV---QH 89 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECC---CSHH-------HHTTTH---HH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECC---Cchh-------hhhhhh---HH
Confidence 699999999999999987633221 122333344445556 66 489999999 8421 110111 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-+. ...+..+...+. .....+|||.|+.|..... .+ .....+.+....+-
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~~ 159 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI--QV-------PTDLAQKFADTHSM 159 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHHTTC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--ee-------CHHHHHHHHHHcCC
Confidence 2357899999999873222111 222333333331 2245789999999975431 11 11234556666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+-++
T Consensus 160 ~~~~~Sa~~ 168 (189)
T 1z06_A 160 PLFETSAKN 168 (189)
T ss_dssp CEEECCSSS
T ss_pred EEEEEeCCc
Confidence 666665544
No 94
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.93 E-value=2e-09 Score=87.75 Aligned_cols=138 Identities=10% Similarity=0.003 Sum_probs=78.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. .+.. .
T Consensus 9 ~G~~~~GKSsli~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~----~~~~-------~ 70 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGT-FIEKYD--PTIEDFYRKEIEV-DSSPSVLEILDTA---GTEQFA----SMRD-------L 70 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH-------H
T ss_pred ECCCCCCHHHHHHHHHcCC-CcccCC--CCcceeEEEEEEE-CCEEEEEEEEECC---CchhhH----HHHH-------H
Confidence 6999999999999999875 332221 2222223344455 665 48999999 964321 1111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++++|+++.++-+-+. ...+..+...... .-..++||+|+.|..... .+ .......+.+..+-
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~~ 140 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESER--EV-------SSSEGRALAEEWGC 140 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHHHTS
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccc--cC-------CHHHHHHHHHHhCC
Confidence 1235789999999873222111 2223333333321 245789999999975431 11 11234555666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 141 ~~~~~Sa~~ 149 (167)
T 1kao_A 141 PFMETSAKS 149 (167)
T ss_dssp CEEEECTTC
T ss_pred CEEEecCCC
Confidence 676665544
No 95
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.93 E-value=4.3e-09 Score=90.51 Aligned_cols=117 Identities=9% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC-CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS-SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~-~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kcv 78 (307)
+|++||||||++|.|+|.. |.+..++ .+.|..+ ....+ ++ .+.++||| |+.+...+. +.....+.. +
T Consensus 32 vG~~g~GKSTLl~~l~g~~-~~~~~~~~~G~~~~~--~~~~~-~~-~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~-~ 102 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLI--NLFEV-AD-GKRLVDLP---GYGYAEVPEEMKRKWQRALGE-Y 102 (210)
T ss_dssp EECTTSSHHHHHTTTCCC--------------CCE--EEEEE-ET-TEEEEECC---CCC------CCHHHHHHHHHH-H
T ss_pred ECCCCCCHHHHHHHHhCCC-ccccccCCCccceee--EEEEe-cC-CEEEEECc---CCcccccCHHHHHHHHHHHHH-H
Confidence 6999999999999999986 2222122 2333332 23344 44 78899999 986532211 222222222 2
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.......+++++|+++...++..+.....++.. .....++|.|+.|.+.+
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCH
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCc
Confidence 223467899999999875666655555555432 23457888999998864
No 96
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.93 E-value=4.3e-10 Score=97.53 Aligned_cols=110 Identities=9% Similarity=0.075 Sum_probs=66.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++........+ ...|.. ..+ .+..+.++||| |..+.. . .+...+....
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~l~Dt~---G~~~~~---~----~~~~~~~~~~ 80 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA-----ADY-DGSGVTLVDFP---GHVKLR---Y----KLSDYLKTRA 80 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEE-----TTG-GGSSCEEEECC---CCGGGT---H----HHHHHHHHHG
T ss_pred ECCCCCCHHHHHHHHhcCCCCCeeee-cCceEE-----EEe-eCceEEEEECC---CcHHHH---H----HHHHHHHhcc
Confidence 69999999999999998763221111 111111 112 56789999999 985422 1 1222222223
Q ss_pred CCCeEEEEEEeCC---CCCCHHHHHHHHHHHHhhcc-----ccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVR---NRFSEEEGAAIHSLESLFGK-----KVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~---~RfT~ee~~~l~~i~~~FG~-----~~~~~~IVLfT~~D~L~~ 133 (307)
..+|++|||+++. ..|+... .++..++.. ....+++||+|+.|....
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTA----EFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHH----HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCChHHHHHHH----HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 4589999999986 2444333 233333322 124579999999998765
No 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.93 E-value=6.3e-09 Score=89.35 Aligned_cols=137 Identities=14% Similarity=0.005 Sum_probs=77.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEE-eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTML-KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~-~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.... .... .|.... .....+ ..+..+.++||| |..+.... ...
T Consensus 30 vG~~~~GKSsli~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 91 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFS-EGYD---PTVENTYSKIVTLGKDEFHLHLVDTA---GQDEYSIL-----------PYS 91 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCC-SCCC---CCSEEEEEEEEC----CEEEEEEEEC---CCCTTCCC-----------CGG
T ss_pred ECCCCcCHHHHHHHHHhCCCC-CCCC---CccceEEEEEEEECCEEEEEEEEECC---CccchHHH-----------HHH
Confidence 699999999999999987633 2221 122211 222222 034678999999 86543211 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...+.|++|||+++.++-+-+ .+..++..+... ..-..+|||+|+.|..... . + .......+....+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~ 160 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQ--VIESLYQKLHEGHGKTRVPVVLVGNKADLSPER--E----V---QAVEGKKLAESWG 160 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHH--HHHHHHHHHHC-----CCCEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHT
T ss_pred HHhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccCcccc--c----c---CHHHHHHHHHHhC
Confidence 456899999999987322111 122333333222 1234789999999976431 1 1 1123456667777
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
..|+...-++
T Consensus 161 ~~~~~~Sa~~ 170 (201)
T 3oes_A 161 ATFMESSARE 170 (201)
T ss_dssp CEEEECCTTC
T ss_pred CeEEEEeCCC
Confidence 7666555443
No 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.92 E-value=6.6e-09 Score=86.75 Aligned_cols=144 Identities=16% Similarity=0.000 Sum_probs=82.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. ....
T Consensus 10 ~~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~-----------~~~~ 71 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTNA-FPGEYI--PTVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD-----------RLRP 71 (186)
T ss_dssp EECSTTSSHHHHHHHHHHSS-CCSSCC--CCSCCEEEEEEEE-TTEEEEEEEECCC---CSGGGT-----------TTGG
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCcC--CcccceeEEEEEE-CCEEEEEEEEECC---CCHhHH-----------HHHH
Confidence 36999999999999999765 432221 2222222333455 775 45599999 874321 1112
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc-----CCCCCchHHH
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL-----GPECPKPLKE 152 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl-----~~~~~~~Lk~ 152 (307)
....+.|++|||+++.++-+-++. ..+..+....+ ..+++||.|+.|.... ....+.+ ..-.......
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHHHH
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHHHHH
Confidence 345689999999998743222222 23444444332 4578999999997765 2222221 1101234455
Q ss_pred HHHhcCC-eEEEEcCCC
Q 044972 153 ILQLCDN-RRVLFDNKT 168 (307)
Q Consensus 153 Li~~Cg~-R~~~fnNk~ 168 (307)
+.+..+. .|+...-++
T Consensus 147 ~~~~~~~~~~~~~Sa~~ 163 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALT 163 (186)
T ss_dssp HHHHTTCSEEEECCTTT
T ss_pred HHHhcCCcEEEEecCCC
Confidence 6666665 565555443
No 99
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.92 E-value=5.4e-10 Score=95.94 Aligned_cols=144 Identities=11% Similarity=-0.000 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ .++.+.......+ +| ..+.++||| |..+. ..+ ...
T Consensus 34 ~G~~~~GKSsli~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~----~~~---~~~---- 96 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNE-FRENISA-TLGVDFQMKTLIV-DGERTVLQLWDTA---GQERF----RSI---AKS---- 96 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCC-CC-----------CEEEEEEE-TTEEEEEEEEECT---TCTTC----HHH---HHH----
T ss_pred ECcCCCCHHHHHHHHHhCC-CCccCCC-CccceeEEEEEEE-CCEEEEEEEEECC---CCcch----hhh---HHH----
Confidence 6999999999999999876 3222111 1112223334455 66 468999999 96432 111 111
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-++ ...+..+...... -..+|||.|+.|.... ... +....-.......+....+-
T Consensus 97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~-~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AAT-EGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHH-TTCCCCCHHHHHHHHHHHTC
T ss_pred HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccc-ccccccCHHHHHHHHHHcCC
Confidence 1235799999999863332222 2223333333222 3578999999997532 111 01111012234566666777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 172 ~~~~~SA~~ 180 (199)
T 2p5s_A 172 LFCETSAKD 180 (199)
T ss_dssp EEEECCTTT
T ss_pred eEEEeeCCC
Confidence 766555543
No 100
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.92 E-value=3.5e-09 Score=97.66 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=83.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~l 80 (307)
+|.|||||||++|.+.|...+.+..+ ++|... ..+.+ + +..+.++||| |..+... +.+ +.+.+...
T Consensus 9 vG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~--~~~~~-~~~~~l~l~Dtp---G~~~~~~~~~~---e~v~~~~~- 76 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQRVGNWP--GVTVER--KSGLV-KKNKDLEIQDLP---GIYSMSPYSPE---AKVARDYL- 76 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSC--EEEEC-TTCTTEEEEECC---CCSCSSCSSHH---HHHHHHHH-
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEE--EEEEE-ecCCeEEEEECC---CcCccCCCChH---HHHHHHHH-
Confidence 69999999999999999886654432 445433 23445 4 7789999999 8875432 222 22333222
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR 160 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R 160 (307)
...++|++|+|+++. .+ +. .+.++..+.. .-..+||+.|+.|..... . + ......|.+..|-.
T Consensus 77 ~~~~~d~vi~V~D~t-~~-e~---~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~--~----~----~~~~~~l~~~lg~~ 139 (272)
T 3b1v_A 77 LSQRADSILNVVDAT-NL-ER---NLYLTTQLIE--TGIPVTIALNMIDVLDGQ--G----K----KINVDKLSYHLGVP 139 (272)
T ss_dssp HTTCCSEEEEEEEGG-GH-HH---HHHHHHHHHH--TCSCEEEEEECHHHHHHT--T----C----CCCHHHHHHHHTSC
T ss_pred hcCCCCEEEEEecCC-ch-Hh---HHHHHHHHHh--cCCCEEEEEEChhhCCcC--C----c----HHHHHHHHHHcCCC
Confidence 225799999999986 32 11 2223222221 235789999998865321 0 1 12345666666666
Q ss_pred EEEEcCCCC
Q 044972 161 RVLFDNKTK 169 (307)
Q Consensus 161 ~~~fnNk~~ 169 (307)
++...-+..
T Consensus 140 vi~~SA~~g 148 (272)
T 3b1v_A 140 VVATSALKQ 148 (272)
T ss_dssp EEECBTTTT
T ss_pred EEEEEccCC
Confidence 666665443
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.92 E-value=2.7e-09 Score=88.63 Aligned_cols=113 Identities=12% Similarity=-0.055 Sum_probs=64.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-C--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-G--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.+++..... .. ....+.........+ + + ..+.++||| |..+. .....
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~---G~~~~-----------~~~~~ 76 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQ-QY-KATIGADFLTKEVTV-DGDKVATMQVWDTA---GQERF-----------QSLGV 76 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCT-TC----CCCSCEEEEECC-SSSCCEEEEEECCC------------------------
T ss_pred ECCCCCCHHHHHHHHHhCcCCc-cc-CCccceEEEEEEEEE-cCCcEEEEEEEECC---CChHh-----------hhhhH
Confidence 6999999999999999876332 21 112223333444445 4 2 588999999 84321 11123
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK--KVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~ 132 (307)
....+.|++|||+++.++-+-++ ...+..+....+. ..-..++||+|+.|...
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 45578999999999873322111 2223333333321 13457899999999754
No 102
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.92 E-value=7.8e-09 Score=89.47 Aligned_cols=138 Identities=10% Similarity=-0.023 Sum_probs=80.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC------------CeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD------------GQVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~------------Gr~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
+|.+||||||++|.+++.. |..... ..++.........+ + +..+.|+||| |.. ..
T Consensus 31 vG~~~~GKSsLi~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~---G~~-------~~ 97 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNK-FNPKFI-TTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTA---GQE-------RF 97 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSC-CCCEEE-EEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEE---SHH-------HH
T ss_pred ECcCCCCHHHHHHHHhcCC-CCcCCC-CceeEEEEEEEEEE-CCccccccccCceeEEEEEEECC---CcH-------hH
Confidence 6999999999999999875 321111 11111122223334 3 4589999999 831 11
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
.........+.|++|||+++.++.+ ...+..++..+.... ....+|||+|+.|..... . + ...
T Consensus 98 ----~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~----v---~~~ 162 (217)
T 2f7s_A 98 ----RSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR--E----V---NER 162 (217)
T ss_dssp ----HHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--C----S---CHH
T ss_pred ----HhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc--c----c---CHH
Confidence 1112233467899999999863222 122234444443322 245789999999975431 1 1 113
Q ss_pred hHHHHHHhcCCeEEEEcCCC
Q 044972 149 PLKEILQLCDNRRVLFDNKT 168 (307)
Q Consensus 149 ~Lk~Li~~Cg~R~~~fnNk~ 168 (307)
.++.+.+..+-.|+....++
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTT
T ss_pred HHHHHHHHCCCcEEEEECCC
Confidence 45666777777777776654
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=9.4e-10 Score=93.31 Aligned_cols=138 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++... .....+ ... ........+ ++. .+.++||| |..+.. .+.. .
T Consensus 14 vG~~~~GKSsli~~l~~~~~-~~~~~~-t~~-~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~-------~ 75 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTF-RDTYIP-TIE-DTYRQVISC-DKSVCTLQITDTT---GSHQFP----AMQR-------L 75 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCC-CCTTSC-CCC-EEEEEEEEE-TTEEEEEEEEECC---GGGSCH----HHHH-------H
T ss_pred ECCCCCcHHHHHHHHHcCCC-CCcccC-ccc-cceeEEEEE-CCEEEEEEEEeCC---ChHHhH----HHHH-------H
Confidence 69999999999999998653 221111 111 111222334 543 78999999 965421 1111 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
..++.|++|||+++.++-+-++ ...+..+..+.+......+|||+|+.|..... .+ ......+....+-
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~ 145 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD---------TREAQAVAQEWKC 145 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC---------HHHHHHHHHHHTC
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC---------HHHHHHHHHHhCC
Confidence 2245799999999873222121 22344455554433345799999999976431 11 1234455566666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+-++
T Consensus 146 ~~~~~Sa~~ 154 (199)
T 2gf0_A 146 AFMETSAKM 154 (199)
T ss_dssp EEEECBTTT
T ss_pred eEEEEecCC
Confidence 666555443
No 104
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.90 E-value=3.1e-08 Score=82.93 Aligned_cols=138 Identities=17% Similarity=0.058 Sum_probs=80.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEE--EEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVV--NVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v--~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ ++..+ .++||| |..+......
T Consensus 23 v~G~~~~GKSsl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~~~~----------- 84 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQKI-FVDDYD--PTIEDSYLKHTEI-DNQWAILDVLDTA---GQEEFSAMRE----------- 84 (183)
T ss_dssp EECSTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---SCGGGCSSHH-----------
T ss_pred EECCCCCCHHHHHHHHHhCC-CCCCCC--CCccceeEEEEEe-CCcEEEEEEEECC---CchhhHHHHH-----------
Confidence 36999999999999999874 433222 2222222444456 77654 459999 8543221111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
....+.|++|||+++.++-+-+. ...+..+...... .-..+|||+|+.|..... . + .....+.+.+..+
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~ 154 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR--K----V---TRDQGKEMATKYN 154 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC--C----S---CHHHHHHHHHHHT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhcc--C----c---CHHHHHHHHHHhC
Confidence 11235899999999873221111 1222333332221 234689999999976531 1 1 1234567777778
Q ss_pred CeEEEEcCC
Q 044972 159 NRRVLFDNK 167 (307)
Q Consensus 159 ~R~~~fnNk 167 (307)
..|+....+
T Consensus 155 ~~~~~~Sa~ 163 (183)
T 3kkq_A 155 IPYIETSAK 163 (183)
T ss_dssp CCEEEEBCS
T ss_pred CeEEEeccC
Confidence 778777766
No 105
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.90 E-value=1.1e-08 Score=85.92 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH----HHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF----EFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~----~~i~~eI~kcv 78 (307)
+|.+||||||++|.++|.. |..... .++|..+. ...+ + .+.++||| |+.+....+ +.....+...+
T Consensus 7 ~G~~~~GKSsli~~l~~~~-~~~~~~-~~~t~~~~--~~~~-~--~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKK-VRRGKR-PGVTRKII--EIEW-K--NHKIIDMP---GFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCC-CSSSSS-TTCTTSCE--EEEE-T--TEEEEECC---CBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCcC-CccCCC-CCccceeE--EEec-C--CEEEEECC---CccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999987 543322 24444433 2334 4 79999999 976543222 22222333333
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHH------------HHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEE------------EGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~e------------e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.....+++++++|++.. .|..- +...+..+.. .-.+++||.|+.|....
T Consensus 77 ~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC
T ss_pred HhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc
Confidence 22256788888888865 33221 1112222221 24578999999997654
No 106
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.89 E-value=1.8e-08 Score=86.15 Aligned_cols=108 Identities=9% Similarity=-0.050 Sum_probs=71.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.. |.. .+.|.........+ +|..+.++||| |..+.... .....
T Consensus 29 vG~~~vGKSsli~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-----------~~~~~ 88 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDR-LAT----LQPTWHPTSEELAI-GNIKFTTFDLG---GHIQARRL-----------WKDYF 88 (190)
T ss_dssp EESTTSSHHHHHHHHHHSC-CCC----CCCCCSCEEEEEEE-TTEEEEEEECC---CSGGGTTS-----------GGGGC
T ss_pred ECCCCCCHHHHHHHHhcCC-CCc----cccCCCCCeEEEEE-CCEEEEEEECC---CCHHHHHH-----------HHHHH
Confidence 6999999999999999876 321 12233344556677 89999999999 87542210 12335
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|||+++.++-+-+ ....++..++.. ..-.+++||.|+.|...
T Consensus 89 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFD--EARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCChHHHH--HHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 6899999999987432222 122334443322 12457899999999765
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.89 E-value=1.3e-08 Score=94.92 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=84.1
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI-VKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI-~kcv~l 80 (307)
+|.+||||||+.|.++|.. .|.+.. ...|.........+.++..+.++||| |..+ ..... ......
T Consensus 9 vG~~~vGKSSLi~~l~~~~~~~~~~~--~~~Ti~~~~~~~~~~~~~~l~i~Dt~---G~~~-------~~~~~~~~~~~~ 76 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSNYSAFDTRR--LGATIDVEHSHLRFLGNMTLNLWDCG---GQDV-------FMENYFTKQKDH 76 (307)
T ss_dssp ECCTTSSHHHHHHHHHSCCCTGGGGG--CCCCCSEEEEEEEETTTEEEEEEEEC---CSHH-------HHHHHHTTTHHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCccccC--cCCccceEEEEEEeCCceEEEEEECC---CcHH-------HhhhhhhhHHHH
Confidence 6999999999999999873 455432 24465555555555356799999999 8532 11111 111122
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...++|++|+|+++.++-+-++.. ...++..+.....-..++||.|+.|.... ....+.... ....++.+.+..|
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~v-~~~~~~~~~~~~g 152 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQI-MMKNLSETSSEFG 152 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHH-HHHHHHHHHHTTT
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHHH-HHHHHHHHHHHcC
Confidence 336899999999997554444432 23344443322234689999999998763 111111100 1234667777766
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.88 E-value=1.2e-08 Score=86.82 Aligned_cols=138 Identities=9% Similarity=-0.065 Sum_probs=80.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.+...... ...+.........+ +|. .+.++||| |..+..... ..
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~ 89 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTA---GQESFRSIT-----------RS 89 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCT---TGGGTSCCC-----------HH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECC---CchhhhhhH-----------HH
Confidence 6999999999999999876432211 22333344445556 764 88999999 864322110 11
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-++ ...+..+..... ....++||+|+.|..... . + .....+.+....+-
T Consensus 90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRR--D----V---KREEGEAFAREHGL 158 (191)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCcc--c----c---CHHHHHHHHHHcCC
Confidence 2357899999999873222111 122233333221 245789999999975431 1 1 11235566667777
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+..+.++
T Consensus 159 ~~~~~Sa~~ 167 (191)
T 2a5j_A 159 IFMETSAKT 167 (191)
T ss_dssp EEEEECTTT
T ss_pred EEEEEeCCC
Confidence 777776554
No 109
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.88 E-value=4.2e-09 Score=86.26 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=65.7
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ ++ ..+.++||| |..+... +...
T Consensus 8 v~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~~----~~~~------ 70 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQGI-FVEKYD--PTIEDSYRKQVEV-DCQQCMLEILDTA---GTEQFTA----MRDL------ 70 (167)
T ss_dssp EECSTTSSHHHHHHHHHHCC-CCCSCC--CCSEEEEEEEEES-SSCEEEEEEEEEC---SSCSSTT----HHHH------
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCCC--CCccceEEEEEEE-CCEEEEEEEEECC---ChHHHHH----HHHH------
Confidence 36999999999999999865 432221 1121222223344 44 478899999 9654321 1111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++++|+++.++-+-+. ...+..+...... ....++||+|+.|....
T Consensus 71 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 71 -YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE 123 (167)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred -HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence 1134799999999873322111 2233334443322 24578999999997643
No 110
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.88 E-value=2.1e-08 Score=85.13 Aligned_cols=110 Identities=16% Similarity=0.036 Sum_probs=69.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ +| ..+.++||| |..+... ....
T Consensus 24 ~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~D~~---G~~~~~~-----------~~~~ 85 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDA-FPEEYV--PTVFDHYAVSVTV-GGKQYLLGLYDTA---GQEDYDR-----------LRPL 85 (194)
T ss_dssp EECTTSSHHHHHHHHHHSS-CCCSCC--CSSCCCEEEEEES-SSCEEEEEEECCC---CSSSSTT-----------TGGG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCC--CcccceeEEEEEE-CCEEEEEEEEECC---CCcchhH-----------HHHH
Confidence 6999999999999999874 543322 2222222233445 66 578899999 9754321 1123
Q ss_pred cCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++.++ |..-....+..+....+ ...++||+|+.|....
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 45789999999998733 22211123444444322 4579999999998765
No 111
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.87 E-value=1.6e-08 Score=86.63 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=70.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.++|.-........ ..|. ......+. ....+.++||| |..+-...... .. .
T Consensus 26 vG~~~vGKTsLi~~l~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~Dt~---G~~~~~~~~~~----~~----~ 91 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMSPNETLFL-ESTN--KIYKDDISNSSFVNFQIWDFP---GQMDFFDPTFD----YE----M 91 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCCGGGGGGC-CCCC--SCEEEEECCTTSCCEEEEECC---SSCCTTCTTCC----HH----H
T ss_pred ECCCCCCHHHHHHHHHhcCCCcceeee-cccc--ceeeeeccCCCeeEEEEEECC---CCHHHHhhhhh----cc----c
Confidence 699999999999999996322211111 1111 11122221 33689999999 86442111100 00 1
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++.+++.+.......++..+....-...+|||.|+.|.+.+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 12368999999999866545555556666665322335688999999998764
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.87 E-value=2.3e-09 Score=92.95 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE--EEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT--MLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~--~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
+|.+||||||++|.++|.. |...... |........ ...+| ..+.++||| |..+......
T Consensus 17 vG~~~~GKSsli~~l~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~~~---------- 79 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGR-FEKNYNA---TVGAVNHPVTFLDDQGNVIKFNVWDTA---GQEKKAVLKD---------- 79 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCS-TTCEEET---TTTEEEEEEEEEBTTSCEEEEEEEEEC---SGGGTSCCCH----------
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCCC---ccceeeEEEEEEeCCCcEEEEEEEecC---CchhhchHHH----------
Confidence 6999999999999999876 3322211 222211111 12123 579999999 8654321111
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|||+++.++.+-++ ...+..+....+. -..+|||.|+.|..... . + .......+....
T Consensus 80 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~ 147 (218)
T 4djt_A 80 -VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKNRQ--K----I---SKKLVMEVLKGK 147 (218)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC----------C---CHHHHHHHTTTC
T ss_pred -HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHc
Confidence 12357899999999874443332 2233444444432 25789999999976431 1 1 112234444555
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+..|+...-++
T Consensus 148 ~~~~~~~Sa~~ 158 (218)
T 4djt_A 148 NYEYFEISAKT 158 (218)
T ss_dssp CCEEEEEBTTT
T ss_pred CCcEEEEecCC
Confidence 66676666554
No 113
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.86 E-value=1.7e-08 Score=98.37 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=82.7
Q ss_pred CCCCCCcHHHHHHHHHCCCc--cccc------c----C-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972 3 ACEYIKICTTTGNSILGRRA--FKSK------V----G-------------------SSEDTKTCEMQRTMLKDGQVVNV 51 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~--F~s~------~----s-------------------~~svT~~c~~~~~~~~~Gr~v~V 51 (307)
+|.+|+||||++|.|++... |... . + ..+.|..+......+ +++.+++
T Consensus 30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~~~~~~i 108 (434)
T 1zun_B 30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-AKRKFII 108 (434)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-SSEEEEE
T ss_pred EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-CCceEEE
Confidence 69999999999999997642 1100 0 0 013344444444556 7889999
Q ss_pred EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|||| |..+ ....+.. ....+|++|||+++...+..+....+..+.. +| ..++|||+|+.|..
T Consensus 109 iDtp---Gh~~-------f~~~~~~----~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 109 ADTP---GHEQ-------YTRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLN 170 (434)
T ss_dssp EECC---CSGG-------GHHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTT
T ss_pred EECC---ChHH-------HHHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEEcCcCC
Confidence 9999 9643 1222222 2368999999999976777776666655443 23 35799999999987
Q ss_pred CCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 132 EDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
..+...++... ..++.+++..|
T Consensus 171 ~~~~~~~~~i~-----~~~~~~~~~~g 192 (434)
T 1zun_B 171 GFDERVFESIK-----ADYLKFAEGIA 192 (434)
T ss_dssp TSCHHHHHHHH-----HHHHHHHHTTT
T ss_pred cccHHHHHHHH-----HHHHHHHHHhC
Confidence 53111222211 24677777777
No 114
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.86 E-value=9.4e-09 Score=100.75 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=72.6
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||++|.||+........ ...+.|.........+ +++.+++||
T Consensus 23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~~~~~iiD 101 (439)
T 3j2k_7 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EKKHFTILD 101 (439)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CCeEEEEEE
Confidence 6999999999999998763211100 0124566666666677 899999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC-------HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS-------EEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT-------~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |..+ ....+. ....++|++|||+++..... .+.+..+..+.. .| ..++||++|
T Consensus 102 TP---Gh~~-------f~~~~~----~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v~~iIvviN 163 (439)
T 3j2k_7 102 AP---GHKS-------FVPNMI----GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---VKHLIVLIN 163 (439)
T ss_pred CC---ChHH-------HHHHHH----hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---CCeEEEEee
Confidence 99 8532 222222 23457999999999874433 344444444433 22 456899999
Q ss_pred cCCCCC
Q 044972 127 RGDELE 132 (307)
Q Consensus 127 ~~D~L~ 132 (307)
+.|...
T Consensus 164 K~Dl~~ 169 (439)
T 3j2k_7 164 KMDDPT 169 (439)
T ss_pred cCCCcc
Confidence 999754
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.86 E-value=2.3e-08 Score=85.68 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=67.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+++.+ |... ..|.........+ ++..+.++||| |..+.... .. ...
T Consensus 35 ~G~~~vGKSsLi~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-------~~----~~~ 94 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNICFTVWDVG---GQDKIRPL-------WR----HYF 94 (192)
T ss_dssp EESTTSSHHHHHHHHCSSC-CEEE----EEETTEEEEEEEE-TTEEEEEEECC--------CTT-------HH----HHH
T ss_pred ECCCCCCHHHHHHHHHhCC-cccc----CCcCceeEEEEEE-CCEEEEEEECC---CCHhHHHH-------HH----HHh
Confidence 6999999999999999876 4322 1243444555667 88999999999 97542211 11 112
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|||+++.++-+-+ .+..++..+.... .-..+|||.|+.|....
T Consensus 95 ~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 4789999999987432211 2234444443322 24578999999997544
No 116
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.85 E-value=4.2e-09 Score=90.00 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=64.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++....... ...++.+.......+ +| ..+.++||| |..+. ..+ ...
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~----~~~---~~~---- 94 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVEL-RGKKIRLQIWDTA---GQERF----NSI---TSA---- 94 (192)
T ss_dssp ECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG----HHH---HHH----
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEE-CCeEEEEEEEeCC---CcHHH----HHH---HHH----
Confidence 699999999999999987633221 223333444455566 66 478999999 85321 111 111
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++.++.+-++. ..+..+..... .-..++||+|+.|...
T Consensus 95 ~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 12357999999998743332221 12233333221 2357899999999754
No 117
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.85 E-value=1.5e-08 Score=86.10 Aligned_cols=139 Identities=10% Similarity=-0.034 Sum_probs=80.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|.. +.++||| |..+.. ....
T Consensus 28 ~vG~~~~GKSsl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~-----------~~~~ 89 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKGE-IPTAYV--PTVFENFSHVMKY-KNEEFILHLWDTA---GQEEYD-----------RLRP 89 (194)
T ss_dssp EECSTTSSHHHHHHHHHHSC-CCSSCC--CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGT-----------TTGG
T ss_pred EECcCCCCHHHHHHHHhcCC-CCCccC--CeeeeeeEEEEEE-CCEEEEEEEEECC---CcHHHH-----------HHhH
Confidence 37999999999999999876 432221 1121222233445 6654 5999999 843211 1122
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|||+++.++-+-++ ...+..+.... .-..+|||.|+.|....... .+ .......+.+..
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~----~~---~~~~~~~~~~~~ 159 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSD----DV---TKQEGDDLCQKL 159 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTT----CC---CHHHHHHHHHHH
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCC----cc---cHHHHHHHHHhc
Confidence 35578999999999874322222 22233333322 13578999999997653100 01 123456677776
Q ss_pred CCe-EEEEcCCC
Q 044972 158 DNR-RVLFDNKT 168 (307)
Q Consensus 158 g~R-~~~fnNk~ 168 (307)
+.. |+...-++
T Consensus 160 ~~~~~~~~Sa~~ 171 (194)
T 3reg_A 160 GCVAYIEASSVA 171 (194)
T ss_dssp TCSCEEECBTTT
T ss_pred CCCEEEEeecCC
Confidence 765 66555443
No 118
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.85 E-value=2.3e-08 Score=86.20 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=78.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.... ...++.........+ +| ..+.|+||| |..+. .. + ...
T Consensus 35 vG~~~vGKSsli~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~----~~----~---~~~ 97 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGA-FSERQ-GSTIGVDFTMKTLEI-QGKRVKLQIWDTA---GQERF----RT----I---TQS 97 (201)
T ss_dssp EECTTSSHHHHHHHHHHSC-C-----------CEEEEEEEE-TTEEEEEEEECCT---TCGGG----HH----H---HHH
T ss_pred ECcCCCCHHHHHHHHhhCC-CCCCC-CCCcceEEEEEEEEE-CCEEEEEEEEECC---CcHhH----HH----H---HHH
Confidence 6999999999999999876 43221 112223344445566 77 489999999 86321 11 1 122
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+. ...+..+....+ .-..+|||.|+.|.......+ ...++.+.+..+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~ 166 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVS---------LAEAQSLAEHYDI 166 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccC---------HHHHHHHHHHcCC
Confidence 3467899999999863222111 122333333321 235789999999976431011 2345667777776
Q ss_pred -eEEEEcCCC
Q 044972 160 -RRVLFDNKT 168 (307)
Q Consensus 160 -R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 167 ~~~~~~SA~~ 176 (201)
T 2hup_A 167 LCAIETSAKD 176 (201)
T ss_dssp SEEEECBTTT
T ss_pred CEEEEEeCCC
Confidence 666655544
No 119
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.85 E-value=9.7e-09 Score=85.29 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=80.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC---eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG---QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G---r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.+++.+ |..... ..++.........+ +| ..+.++||| |........ .
T Consensus 12 ~G~~~~GKssl~~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~---G~~~~~~~~-----------~ 74 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQET-FGKQYK-QTIGLDFFLRRITL-PGNLNVTLQIWDIG---GQTIGGKML-----------D 74 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGG-TTHHHH-HTTTSSEEEEEEEE-TTTEEEEEEEEECT---TCCTTCTTH-----------H
T ss_pred ECcCCCCHHHHHHHHHhCc-CCCCCC-CceeEEEEEEEEEe-CCCCEEEEEEEECC---CCccccchh-----------h
Confidence 6999999999999999876 322111 12222344445566 55 689999999 864422111 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|||+++.++.+-++ ...+..+....... -...++||.|+.|.......+ ....+.+.+..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~ 145 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---------PEKHLRFCQEN 145 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---------HHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---------HHHHHHHHHHc
Confidence 12357899999999873322221 12233333332221 223478999999975421011 12345566666
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+...-++
T Consensus 146 ~~~~~~~Sa~~ 156 (178)
T 2hxs_A 146 GFSSHFVSAKT 156 (178)
T ss_dssp TCEEEEECTTT
T ss_pred CCcEEEEeCCC
Confidence 66666665544
No 120
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.84 E-value=1.8e-08 Score=86.66 Aligned_cols=138 Identities=10% Similarity=-0.030 Sum_probs=75.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++....... ...++.........+ +| ..+.++||| |..+... + ...
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~~--------~---~~~ 93 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTA---GQERFRS--------V---TRS 93 (200)
T ss_dssp EESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCT---THHHHSC--------C---CHH
T ss_pred ECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCC---CcHhHHH--------H---HHH
Confidence 699999999999999987643221 122233333444456 66 589999999 8421110 0 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-++ ...+..+..... ....++||+|+.|.......+ ......+.+..+-
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~ 162 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVT---------FLEASRFAQENEL 162 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccC---------HHHHHHHHHHcCC
Confidence 2357899999999873322111 122222333222 235789999999975431011 1234555666666
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 163 ~~~~~SA~~ 171 (200)
T 2o52_A 163 MFLETSALT 171 (200)
T ss_dssp EEEEECTTT
T ss_pred EEEEEeCCC
Confidence 676665544
No 121
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.84 E-value=9e-09 Score=105.16 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=85.1
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc--------------C---------------CCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV--------------G---------------SSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~--------------s---------------~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||++|.|++........ + ..++|.........+ .++.++|||
T Consensus 173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~~~~iiD 251 (611)
T 3izq_1 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRANFTIVD 251 (611)
T ss_dssp ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSCEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCceEEEEE
Confidence 6999999999999999874321110 0 124565555556667 889999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |.-+ ..+.+.....++|++|||+++... +..+....+..+.. +| ..++|||+|
T Consensus 252 TP---G~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~iIVVvN 313 (611)
T 3izq_1 252 AP---GHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLIIAMN 313 (611)
T ss_dssp CC---SSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCEEEEEEE
T ss_pred CC---CCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCeEEEEEe
Confidence 99 9743 223334556789999999998621 34445444444432 23 457999999
Q ss_pred cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+.|........++... ..+..++..+|.
T Consensus 314 KiDl~~~~~~~~~ei~-----~~l~~~l~~~g~ 341 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIK-----SKLLPYLVDIGF 341 (611)
T ss_dssp CTTTTTTCHHHHHHHH-----HHHHHHHHHHTC
T ss_pred cccccchhHHHHHHHH-----HHHHHHHHhhcc
Confidence 9998763212232222 246677776664
No 122
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.84 E-value=6.9e-09 Score=102.66 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=82.7
Q ss_pred CCCCCCcHHHHHHHHHCCCc-cccc----------------------------cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRA-FKSK----------------------------VGSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-F~s~----------------------------~s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||++|.|++... |... ....++|.......... .+..+++||
T Consensus 39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiD 117 (483)
T 3p26_A 39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRANFTIVD 117 (483)
T ss_dssp ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCceEEEEE
Confidence 69999999999999987521 1100 00124566665566667 889999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |.-+ ....+ .....++|++|||+++... +..+....+..+.. +| ..++|||+|
T Consensus 118 TP---G~~~-------f~~~~----~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~iIvviN 179 (483)
T 3p26_A 118 AP---GHRD-------FVPNA----IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLIIAMN 179 (483)
T ss_dssp CC---CCGG-------GHHHH----HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCEEEEEE
T ss_pred CC---CcHH-------HHHHH----HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcEEEEEE
Confidence 99 9743 12222 2334679999999999743 34455554444433 22 357999999
Q ss_pred cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
+.|........+++.. ..+..++...|.
T Consensus 180 K~Dl~~~~~~~~~~i~-----~~~~~~l~~~g~ 207 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIK-----SKLLPYLVDIGF 207 (483)
T ss_dssp CGGGGTTCHHHHHHHH-----HHHHHHHHHHTC
T ss_pred CcCcccchHHHHHHHH-----HHHHHHHHHcCC
Confidence 9997753212333222 246666766654
No 123
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.84 E-value=3.1e-09 Score=90.79 Aligned_cols=113 Identities=11% Similarity=-0.052 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.++|.... ... ...++.........+ ++ ..+.++||| |..+.... ...
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~ 76 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFS-NQY-KATIGADFLTKEVMV-DDRLVTMQIWDTA---GQERFQSL-----------GVA 76 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC-SSC-CCCCSEEEEEEEEES-SSCEEEEEEEEEC---SSGGGSCS-----------CCG
T ss_pred ECcCCCCHHHHHHHHHcCCCC-CCC-CCcccceEEEEEEEE-CCEEEEEEEEeCC---CcHHHHHh-----------HHH
Confidence 699999999999999998633 221 222333444444455 55 478999999 85332110 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK--VFDYMIVVFTRGDELE 132 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~ 132 (307)
...+.|++|||+++.++.+-+. ...+..+....+.. ....++||+|+.|...
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 3468899999999863322221 12233333333221 2357899999999763
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.83 E-value=2.4e-09 Score=105.01 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|.+|+||||++|.|+|.+...+. ...+.|.........+ .+. .+++|||| |+.|.........+. ....
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~l~liDTp---G~~d~~~l~~~~~~~----~~~~ 110 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMEL-HPIGPVTLVDTP---GLDDVGELGRLRVEK----ARRV 110 (423)
T ss_dssp ECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECS---STTCCCTTCCCCHHH----HHHH
T ss_pred ECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEE-CCCCeEEEEECc---CCCcccchhHHHHHH----HHHH
Confidence 699999999999999998754332 2234555666666677 655 99999999 987653211110111 1123
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+.|++|||+++ .++..+...+..+.+. ...+|||+|+.|....
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTC
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCc
Confidence 4579999999987 5777788888887764 5679999999998765
No 125
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.83 E-value=3.6e-08 Score=81.66 Aligned_cols=139 Identities=14% Similarity=0.019 Sum_probs=78.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.......
T Consensus 14 v~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~~~~~---------- 76 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQSY-FVSDYD--PTIEDSYTKICSV-DGIPARLDILDTA---GQEEFGAMREQ---------- 76 (181)
T ss_dssp EEECTTSSHHHHHHHHHHSS-CCSSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTTTSCCHHH----------
T ss_pred EECCCCCCHHHHHHHHHhCc-CccccC--CCcCceEEEEEEE-CCEEEEEEEEECC---CchhhHHHHHH----------
Confidence 36999999999999999874 433221 2222222344556 764 78889999 96543221111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...+.|++|+|+++.++-+-.. ...+..+...+. ..-..++||+|+.|..... .+ .......+....+
T Consensus 77 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~ 145 (181)
T 2fn4_A 77 -YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQR--QV-------PRSEASAFGASHH 145 (181)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHHTT
T ss_pred -HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc-------CHHHHHHHHHHcC
Confidence 1135799999999873221111 112222222222 1234789999999976431 11 0123445555566
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+...-++
T Consensus 146 ~~~~~~Sa~~ 155 (181)
T 2fn4_A 146 VAYFEASAKL 155 (181)
T ss_dssp CEEEECBTTT
T ss_pred CeEEEecCCC
Confidence 6666655544
No 126
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=2.1e-09 Score=91.53 Aligned_cols=140 Identities=9% Similarity=-0.099 Sum_probs=77.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
.+|.+||||||++|.+++........+ ..+.........+. .+..+.++||| |.. . .......
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~-------~----~~~~~~~ 91 (191)
T 3dz8_A 28 IIGNSSVGKTSFLFRYADDTFTPAFVS--TVGIDFKVKTVYRHEKRVKLQIWDTA---GQE-------R----YRTITTA 91 (191)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCCCEEE--EETTTEEEEEEEETTTTEEEEEECHH---HHH-------H----CHHHHHH
T ss_pred EECCCCcCHHHHHHHHhcCCCCcccCC--CeeeEEEEEEEEECCEEEEEEEEeCC---ChH-------H----HHHHHHH
Confidence 369999999999999998653221111 11222222333331 34579999999 831 1 1112223
Q ss_pred cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+ -...+..+....+ ....+|||.|+.|..... . + .....+.+....+-
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEER--V----V---PTEKGQLLAEQLGF 160 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHcCC
Confidence 346889999999987322211 1223333333221 245789999999965431 1 1 11234566666676
Q ss_pred eEEEEcCCC
Q 044972 160 RRVLFDNKT 168 (307)
Q Consensus 160 R~~~fnNk~ 168 (307)
.|+...-++
T Consensus 161 ~~~~~Sa~~ 169 (191)
T 3dz8_A 161 DFFEASAKE 169 (191)
T ss_dssp EEEECBTTT
T ss_pred eEEEEECCC
Confidence 666555443
No 127
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.82 E-value=9.8e-09 Score=84.32 Aligned_cols=135 Identities=14% Similarity=-0.020 Sum_probs=66.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.++|....... ....+.. .....+ ++. .+.++||| |..... .+ ...
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~--~~~~~~-~~~~~~~~i~D~~---g~~~~~--------~~---~~~ 68 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDGPEA--EAAGHTY--DRSIVV-DGEEASLMVYDIW---EQDGGR--------WL---PGH 68 (166)
T ss_dssp EESTTSSHHHHHHHHCCC------------CEE--EEEEEE-TTEEEEEEEEECC-------------------------
T ss_pred ECCCCCCHHHHHHHHcCccccCCC--Cccccce--EEEEEE-CCEEEEEEEEECC---CCccch--------hh---hhh
Confidence 699999999999999987643321 1122221 223345 554 67899999 854321 01 112
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
...+.|++++|+++.++-+-+ ....++..+... ..-..++||.|+.|.......+ ......+....+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~ 137 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFE--KASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS---------VDEGRACAVVFD 137 (166)
T ss_dssp ----CCEEEEEEETTCHHHHH--HHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSC---------HHHHHHHHHHTT
T ss_pred hhhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEeccccccccccC---------HHHHHHHHHHhC
Confidence 346789999999987332211 122222222211 1235789999999976542111 122345555566
Q ss_pred CeEEEEcCC
Q 044972 159 NRRVLFDNK 167 (307)
Q Consensus 159 ~R~~~fnNk 167 (307)
-.|+...-+
T Consensus 138 ~~~~~~Sa~ 146 (166)
T 3q72_A 138 CKFIETSAA 146 (166)
T ss_dssp CEEEECBGG
T ss_pred CcEEEeccC
Confidence 555544433
No 128
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.82 E-value=3.4e-08 Score=83.67 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=69.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.++|...... +.|.........+ ++..+.++||| |.... .. + .....
T Consensus 22 vG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~---G~~~~----~~----~---~~~~~ 81 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIG---GQRKI----RP----Y---WRSYF 81 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECS---SCGGG----HH----H---HHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECC---CCHHH----HH----H---HHHHh
Confidence 69999999999999998753211 1222233445567 89999999999 86421 11 1 11233
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|++|+|+++.++-+-++ +..++..++... .-..++||.|+.|....
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 67999999999873322221 223444443321 23579999999997654
No 129
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.81 E-value=2.4e-08 Score=85.79 Aligned_cols=142 Identities=13% Similarity=-0.008 Sum_probs=80.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++... ..... ..++.... ....+ +|. .+.++||| |..+... ....
T Consensus 31 vG~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~-~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~~~ 92 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQF-PEVYV-PTVFENYI-ADIEV-DGKQVELALWDTA---GQEDYDR-----------LRPL 92 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSC-CSSCC-CSSCCCCE-EEEEE-TTEEEEEEEECCC---CSGGGTT-----------TGGG
T ss_pred ECCCCCCHHHHHHHHHhCcC-CcccC-CcccceEE-EEEEE-CCEEEEEEEEECC---CchhHHH-----------HHHH
Confidence 69999999999999998763 22211 12222222 23455 664 78899999 8532110 1123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcC----CC-CCchHHHH
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLG----PE-CPKPLKEI 153 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~----~~-~~~~Lk~L 153 (307)
...+.|++|||+++.++-+-++ ...+..+.... ....++||+|+.|.+.. ....+.+. .. .......+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcC--ccchhhhcccccCcCCHHHHHHH
Confidence 4568999999999873222221 22334444332 14578999999998765 22222221 10 11244566
Q ss_pred HHhcCC-eEEEEcCC
Q 044972 154 LQLCDN-RRVLFDNK 167 (307)
Q Consensus 154 i~~Cg~-R~~~fnNk 167 (307)
.+..+. .|+...-+
T Consensus 168 ~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 168 ANRISAFGYLECSAK 182 (201)
T ss_dssp HHHTTCSEEEECCTT
T ss_pred HHhCCCcEEEEeeCC
Confidence 666665 55544443
No 130
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=4.4e-09 Score=89.80 Aligned_cols=138 Identities=13% Similarity=-0.009 Sum_probs=77.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |.....+ +.+.. ......+ ++ ..+.++||| |..+ . .+ ....
T Consensus 33 v~G~~~vGKSsli~~l~~~~-~~~~~~~-t~~~~-~~~~~~~-~~~~~~~~l~Dt~---G~~~-~----~~---~~~~-- 95 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFLTKR-FIWEYDP-TLEST-YRHQATI-DDEVVSMEILDTA---GQED-T----IQ---REGH-- 95 (196)
T ss_dssp EECCTTSSHHHHHHHHHHSC-CCSCCCT-TCCEE-EEEEEEE-TTEEEEEEEEECC---CCCC-C----HH---HHHH--
T ss_pred EECCCCCCHHHHHHHHHhCC-CCcccCC-CCCce-EEEEEEE-CCEEEEEEEEECC---CCCc-c----cc---hhhh--
Confidence 36999999999999999876 4322111 11211 2223445 65 468999999 9865 1 11 1111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
..+.|++|||+++.++-+-++ ...+..+..... ..-..+|||+|+.|.......+ ......+.+..+
T Consensus 96 --~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~~~~ 163 (196)
T 2atv_A 96 --MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVS---------TEEGEKLATELA 163 (196)
T ss_dssp --HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSC---------HHHHHHHHHHHT
T ss_pred --hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccC---------HHHHHHHHHHhC
Confidence 234699999999873222111 122333333322 1245789999999976431011 123455566666
Q ss_pred CeEEEEcCCC
Q 044972 159 NRRVLFDNKT 168 (307)
Q Consensus 159 ~R~~~fnNk~ 168 (307)
-.|+..+-++
T Consensus 164 ~~~~~~Sa~~ 173 (196)
T 2atv_A 164 CAFYECSACT 173 (196)
T ss_dssp SEEEECCTTT
T ss_pred CeEEEECCCc
Confidence 6665555443
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.81 E-value=2.9e-09 Score=101.59 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|+|++.+...+... ..|.........++++..++|+||| |+.+.......+.....+.+
T Consensus 164 vG~~nvGKSTLln~L~~~~~~i~~~~--ftTl~p~~g~v~~~~~~~~~l~DtP---G~i~~a~~~~~l~~~fl~~i---- 234 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKPKIADYH--FTTLVPNLGMVETDDGRSFVMADLP---GLIEGAHQGVGLGHQFLRHI---- 234 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECCEESSTT--SSCCCCCEEEEECSSSCEEEEEEHH---HHHHHTTCTTTTHHHHHHHH----
T ss_pred eCCCCCCHHHHHHHHHcCCCccccCC--ccccCceEEEEEeCCCceEEEecCC---CCcccccccchhHHHHHHHH----
Confidence 79999999999999998775443322 2344555556667334899999999 97431111111222222222
Q ss_pred CCCeEEEEEEeCCC---CCCHHHHHH-HHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRN---RFSEEEGAA-IHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~---RfT~ee~~~-l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
...+++|+|+++.+ +-+-++... +..+.. +++. .-..+|||+|+.|.+..
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~-~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE-YNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH-SCSSTTTSCBCBEEECTTSTTH
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHH-hhhhhcCCCEEEEEECccCCCC
Confidence 34799999999863 233333332 333333 3433 45679999999997643
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=5.4e-08 Score=84.00 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=66.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... ..++... .....+ +|. .+.++||| |..+... ....
T Consensus 31 vG~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~~ 92 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDE-FPEVYV-PTVFENY-VADIEV-DGKQVELALWDTA---GQEDYDR-----------LRPL 92 (207)
T ss_dssp EECTTSSHHHHHHHHHHSS-CC--------CCEE-EEEEEE-TTEEEEEEEEECT---TCTTCTT-----------TGGG
T ss_pred ECcCCCCHHHHHHHHhcCC-CCCcCC-CcccceE-EEEEEE-CCEEEEEEEEECC---CcHHHHH-----------HHHh
Confidence 6999999999999999876 332211 1112222 223455 664 78899999 9754321 1123
Q ss_pred cCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++.++ |..-+...+..+.... .-..++||+|+.|....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSD 144 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGC
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhcc
Confidence 45689999999998732 2222223344444432 14578999999998765
No 133
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.3e-08 Score=87.53 Aligned_cols=137 Identities=11% Similarity=-0.088 Sum_probs=77.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++........ ..++.........+ +| ..+.|+||| |....... ...
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~~ 81 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTA---GQERYRAI-----------TSA 81 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCT---TTTTTTCC-----------CGG
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECC---Cccchhhh-----------HHH
Confidence 6999999999999999876332211 22333344444556 77 588999999 86432110 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++.+-++ ...+..+....+ .-..+|||+|+.|..... . + .......+....+-
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~~ 150 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLR--A----V---PTEESKTFAQENQL 150 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGC--C----S---CHHHHHHHHHHTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc--c----c---CHHHHHHHHHHcCC
Confidence 4568999999999863322222 122333333222 234789999999976431 1 1 11234556666665
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+...-+
T Consensus 151 ~~~~~Sa~ 158 (223)
T 3cpj_B 151 LFTETSAL 158 (223)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCC
Confidence 66555443
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.78 E-value=2.8e-08 Score=98.62 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc----c-cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS----K-VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC 77 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s----~-~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc 77 (307)
+|.+|+||||++|.|+|...+.. . ....+.|.........+ +++.+++|||| |. ++....
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtP---Gh-------~~~~~~---- 89 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAP---GH-------ADLIRA---- 89 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCS---SH-------HHHHHH----
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECC---Ch-------HHHHHH----
Confidence 69999999999999999872110 0 01123455544445667 89999999999 85 222222
Q ss_pred HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
+.....+.|++|||+++...+..+....+..+.. +| ..+ ||++|+.|.... ..++... ..+++++...
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---ip~-IvviNK~Dl~~~--~~~~~~~-----~~l~~~l~~~ 157 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN---IPI-IVVITKSDNAGT--EEIKRTE-----MIMKSILQST 157 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCB-CEEEECTTSSCH--HHHHHHH-----HHHHHHHHHS
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC---CCE-EEEEECCCcccc--hhHHHHH-----HHHHHHHhhh
Confidence 2334568999999999976677777777665544 33 334 999999998753 2233222 1356666654
No 135
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.78 E-value=5e-08 Score=80.22 Aligned_cols=140 Identities=17% Similarity=0.080 Sum_probs=74.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.++|...-... ..+.|.........+ +|. .+.++||| |..+... . +..
T Consensus 7 ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~~---~----~~~--- 70 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIW---EQGDAGG---W----LQD--- 70 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCC---CC---------------C---
T ss_pred EECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECC---Cccccch---h----hhh---
Confidence 3799999999999999986532211 122334444445556 664 67789999 8754211 0 110
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|+|+++.++-+- .....++..+.... .-..++||.|+.|..+.... .......+.+..
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------~~~~~~~~~~~~ 139 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV---------SLEEGRHLAGTL 139 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS---------CHHHHHHHHHHT
T ss_pred hhhccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccC---------CHHHHHHHHHHc
Confidence 112347999999998732111 11223333333221 14578999999997543111 122355666777
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+..|+...-++
T Consensus 140 ~~~~~~~Sa~~ 150 (169)
T 3q85_A 140 SCKHIETSAAL 150 (169)
T ss_dssp TCEEEECBTTT
T ss_pred CCcEEEecCcc
Confidence 77776555443
No 136
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.78 E-value=2.2e-08 Score=86.28 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=65.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|++||||||++|.+.|.+ |... ..|.........+ +|..+.++||| |...... + .....
T Consensus 31 vG~~~vGKSsLi~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~--------~---~~~~~ 90 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDR-LGQH----VPTLHPTSEELTI-AGMTFTTFDLG---GHIQARR--------V---WKNYL 90 (198)
T ss_dssp EEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEEC---C----CC--------G---GGGGG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCcc----CCCCCceeEEEEE-CCEEEEEEECC---CcHhhHH--------H---HHHHH
Confidence 6999999999999999876 3221 1122222345667 89999999999 8643211 0 11234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|||+++.++-+-+ .+..++..+... ..-..+|||.|+.|...
T Consensus 91 ~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 5889999999986332211 222344444332 12457899999999764
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.78 E-value=7.7e-09 Score=89.46 Aligned_cols=111 Identities=21% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |.... .+.+.........+ +|..+. ++||| |..+.. ....
T Consensus 35 vvG~~~~GKSsLi~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~ 96 (204)
T 4gzl_A 35 VVGDGAVGKTCLLISYTTNA-FPGEY--IPTVFDNYSANVMV-DGKPVNLGLWDTA---GLEDYD-----------RLRP 96 (204)
T ss_dssp EEESTTSSHHHHHHHHHHSC-CCC-C--CCCSEEEEEEEEEC-C-CEEEEEEEEEC---CSGGGT-----------TTGG
T ss_pred EECcCCCCHHHHHHHHHhCC-CCCCc--CCeecceeEEEEEE-CCEEEEEEEEECC---CchhhH-----------HHHH
Confidence 36999999999999999764 33221 12222333334455 666555 99999 874321 1122
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|||+++.++-+-++. ..+..+.... .-..+|||.|+.|....
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence 345789999999998743332222 2333343332 24578999999997765
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.76 E-value=1e-08 Score=96.58 Aligned_cols=109 Identities=11% Similarity=-0.025 Sum_probs=68.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+||||||++|.|++.. |.... .|.........+ .+..+.|+||| |-...... .....
T Consensus 171 vG~~~vGKSsLl~~l~~~~-~~~~~----pT~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~~-----------~~~~~ 230 (329)
T 3o47_A 171 VGLDAAGKTTILYKLKLGE-IVTTI----PTIGFNVETVEY-KNISFTVWDVG---GQDKIRPL-----------WRHYF 230 (329)
T ss_dssp EESTTSSHHHHHHHTCSSC-CEEEE----EETTEEEEEEEE-TTEEEEEEECC--------CCS-----------HHHHH
T ss_pred ECCCCccHHHHHHHHhCCC-CCCcc----cccceEEEEEec-CcEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence 6999999999999999877 44322 255555566677 88999999999 84321111 11223
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|+||||+++.++-+-+. +..++..++... .-..+|||.|+.|....
T Consensus 231 ~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 57999999999963322221 222333333322 23468999999997654
No 139
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.75 E-value=3.3e-08 Score=83.03 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=76.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEE---EEeCC--eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRT---MLKDG--QVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~---~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
.+|.+||||||++|.+.|...-...... ...|........ .+ ++ ..+.++||| |..+...
T Consensus 19 vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~----- 89 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV-KGFKTRFHLYTVP---GQVFYNA----- 89 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS-SSCEEEEEEEECC---SCCSCSH-----
T ss_pred EECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccc-cCCceEEEEEeCC---ChHHHHH-----
Confidence 3699999999999999886432211100 011111111110 12 23 478999999 8643221
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhc----cccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972 71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFG----KKVFDYMIVVFTRGDELEDNDETLEDYLGPEC 146 (307)
Q Consensus 71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG----~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~ 146 (307)
+ ......+.|++|||+++....+.+....+..+...+- ...-..+|||.|+.|.... .+
T Consensus 90 ---~---~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~--------- 152 (198)
T 3t1o_A 90 ---S---RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LP--------- 152 (198)
T ss_dssp ---H---HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CC---------
T ss_pred ---H---HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cC---------
Confidence 1 1224578999999999863333344444444433221 1134578999999996543 11
Q ss_pred CchHHHHHHhcCC-eEEEEcC
Q 044972 147 PKPLKEILQLCDN-RRVLFDN 166 (307)
Q Consensus 147 ~~~Lk~Li~~Cg~-R~~~fnN 166 (307)
...++++++..+. .|+...-
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa 173 (198)
T 3t1o_A 153 VEMVRAVVDPEGKFPVLEAVA 173 (198)
T ss_dssp HHHHHHHHCTTCCSCEEECBG
T ss_pred HHHHHHHHHhcCCceEEEEec
Confidence 2234555555555 5554443
No 140
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.75 E-value=2e-08 Score=96.91 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=82.0
Q ss_pred CCCCCCcHHHHHHHHHCC-------Cccccc---c-----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972 3 ACEYIKICTTTGNSILGR-------RAFKSK---V-----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF 67 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-------~~F~s~---~-----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~ 67 (307)
+|.+|+||||++|.|++. ..|... . ...+.|.........+ ++..+++|||| |..+-
T Consensus 17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtp---G~~~f---- 88 (405)
T 2c78_A 17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCP---GHADY---- 88 (405)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECC---CSGGG----
T ss_pred EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECC---ChHHH----
Confidence 699999999999999983 112100 0 0123444443444455 78999999999 97541
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCC
Q 044972 68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP 147 (307)
Q Consensus 68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~ 147 (307)
...+. ....++|++|||+++......+....+..+... -..++||++|+.|.... ...-+.+.
T Consensus 89 ---~~~~~----~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~--~~~~~~~~---- 151 (405)
T 2c78_A 89 ---IKNMI----TGAAQMDGAILVVSAADGPMPQTREHILLARQV----GVPYIVVFMNKVDMVDD--PELLDLVE---- 151 (405)
T ss_dssp ---HHHHH----HHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGCCC--HHHHHHHH----
T ss_pred ---HHHHH----HHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEECccccCc--HHHHHHHH----
Confidence 12222 234578999999999766777766666555442 23458899999998753 22212221
Q ss_pred chHHHHHHhcC
Q 044972 148 KPLKEILQLCD 158 (307)
Q Consensus 148 ~~Lk~Li~~Cg 158 (307)
..++++++.++
T Consensus 152 ~~~~~~l~~~~ 162 (405)
T 2c78_A 152 MEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 14566777665
No 141
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=3.6e-08 Score=96.59 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC----CCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCH---HHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS----SEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADF---EFVS 71 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~----~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~i~ 71 (307)
.+|++||||||++|+|+|......+... ...|.........+. +| ..++|+||| |+.+..... ..+.
T Consensus 36 lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~---g~~~~~~~~~~~~~i~ 112 (418)
T 2qag_C 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP---GFGDAVDNSNCWQPVI 112 (418)
T ss_dssp EECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------CHHHH
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeech---hhhhhccchhhHHHHH
Confidence 4799999999999999998643222110 011222111111110 23 278999999 886542110 1222
Q ss_pred HHHHHHHH-------------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCccc
Q 044972 72 KEIVKCIG-------------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDET 137 (307)
Q Consensus 72 ~eI~kcv~-------------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~s 137 (307)
..|...+. ...|..|++||++... ..|+..+...++.+. . ..++|+|.|++|.+.. ..
T Consensus 113 ~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~--~e 184 (418)
T 2qag_C 113 DYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP--EE 184 (418)
T ss_dssp HHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH--HH
Confidence 22221111 1124456666666543 368888866665553 1 4679999999998865 33
Q ss_pred HHHhcCCCCCchHHHHHHhcCCeEEEEcC
Q 044972 138 LEDYLGPECPKPLKEILQLCDNRRVLFDN 166 (307)
Q Consensus 138 ie~yl~~~~~~~Lk~Li~~Cg~R~~~fnN 166 (307)
+..|.. .+++.+...|-+++.|..
T Consensus 185 v~~~k~-----~i~~~~~~~~i~~~~~sa 208 (418)
T 2qag_C 185 CQQFKK-----QIMKEIQEHKIKIYEFPE 208 (418)
T ss_dssp HHHHHH-----HHHHHHHHHTCCCCCCC-
T ss_pred HHHHHH-----HHHHHHHHcCCeEEeCCC
Confidence 444332 244555555656655553
No 142
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.74 E-value=4.5e-09 Score=91.62 Aligned_cols=135 Identities=12% Similarity=-0.072 Sum_probs=74.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCC-CCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSS-EDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~-svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.+++.. |....++. +.|.. .....+ ++ ..+.++||| |.........
T Consensus 20 v~G~~~~GKSsli~~~~~~~-~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~~---------- 82 (221)
T 3gj0_A 20 LVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVH--PLVFHT-NRGPIKFNVWDTA---GQEKFGGLRD---------- 82 (221)
T ss_dssp EEECTTSSHHHHHTTBHHHH-HTCEEETTTTEEEE--EEEEEE-TTEEEEEEEEEEC---SGGGTSCCCH----------
T ss_pred EECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEE--EEEEEE-CCEEEEEEEEeCC---ChHHHhHHHH----------
Confidence 36999999999999965432 32222221 22222 222333 33 578999999 8543221111
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|||+++.++.+-+. ...+..+...+. -..+|||.|+.|.... .. . .....+....
T Consensus 83 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~-~--------~~~~~~~~~~ 147 (221)
T 3gj0_A 83 -GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KV-K--------AKSIVFHRKK 147 (221)
T ss_dssp -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SS-C--------GGGCCHHHHH
T ss_pred -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cc-c--------HHHHHHHHHc
Confidence 12247899999999874322222 222333333321 3578999999997654 11 1 1223445556
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+..|+...-++
T Consensus 148 ~~~~~~~Sa~~ 158 (221)
T 3gj0_A 148 NLQYYDISAKS 158 (221)
T ss_dssp TCEEEECBGGG
T ss_pred CCEEEEEeCCC
Confidence 66776655443
No 143
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=2e-08 Score=97.48 Aligned_cols=83 Identities=11% Similarity=-0.077 Sum_probs=41.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE---------------------EEeCC---eEEEEEeCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT---------------------MLKDG---QVVNVIDTPAIA 58 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~---------------------~~~~G---r~v~VIDTP~~~ 58 (307)
+|.|||||||++|.|+|.++..+.. ..+|.....+.. .+ ++ .++.++|||
T Consensus 6 vG~pnvGKSTL~n~L~~~~~~~~~~--p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~-~~~~~~~i~lvDtp--- 79 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR-NGLALIPVKMVDVA--- 79 (397)
T ss_dssp EECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE-TTEEEEEEEEEECC---
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCC--CCcccCCceEEEeeccCCchHHhhhhccccccccc-CCcceEEEEEEECC---
Confidence 7999999999999999988332221 123444433322 12 33 479999999
Q ss_pred CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
|+.+..... +.+...+.....+.|++|+|+++.
T Consensus 80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~ 112 (397)
T 1wxq_A 80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT 112 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETT
T ss_pred Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecc
Confidence 986422111 112222223457899999999986
No 144
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.73 E-value=3.8e-08 Score=94.94 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHHCCC------cccc----cc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRR------AFKS----KV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~------~F~s----~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+|+||||++|.|++.. .|.. .. ...+.|.........+ +++.+++|||| |..+
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtp---G~~~------ 78 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCP---GHAD------ 78 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECS---SHHH------
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECC---ChHH------
Confidence 6999999999999999741 1210 00 0123343333333444 67999999999 8632
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
.... +.......|++|||+++......+....+..+.. . -..++||+.|+.|.... ...-+.+. .
T Consensus 79 -f~~~----~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~---~vp~iivviNK~Dl~~~--~~~~~~~~----~ 143 (397)
T 1d2e_A 79 -YVKN----MITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-I---GVEHVVVYVNKADAVQD--SEMVELVE----L 143 (397)
T ss_dssp -HHHH----HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-T---TCCCEEEEEECGGGCSC--HHHHHHHH----H
T ss_pred -HHHH----HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-c---CCCeEEEEEECcccCCC--HHHHHHHH----H
Confidence 2222 2345678999999999976677776666655543 2 24457899999997753 22111221 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.++++++.++
T Consensus 144 ~~~~~l~~~~ 153 (397)
T 1d2e_A 144 EIRELLTEFG 153 (397)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 4667777665
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.71 E-value=3.8e-08 Score=96.85 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=73.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.|||||||++|.+++.+ |... ..|.........+ .+..+.++||| |..+... ......
T Consensus 328 vG~~nvGKSsLl~~l~~~~-~~~~----~~T~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~-----------~~~~~~ 387 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQ-SVTT----IPTVGFNVETVTY-KNVKFNVWDVG---GQDKIRP-----------LWRHYY 387 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSS-CCCC----CCCSSEEEEEEES-SSCEEEEEEEC---CCGGGSG-----------GGGGGG
T ss_pred EcCCCCCHHHHHHHHhcCC-CCCc----CCccceeEEEEEe-CCEEEEEEECC---CcHHHHH-----------HHHHHh
Confidence 6999999999999999987 5432 2355566666677 88999999999 8543211 022345
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~ 133 (307)
.+.|+||||+++.++-+-+ ....++..+.... .-..+|||+|+.|....
T Consensus 388 ~~ad~~i~V~D~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp TTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred ccCCEEEEEEECcchhHHH--HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 7899999999987432211 1223334433321 24579999999997654
No 146
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=4.5e-08 Score=85.05 Aligned_cols=137 Identities=10% Similarity=-0.020 Sum_probs=79.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.... ..+++.........+ +|. .+.++||| |... .......
T Consensus 32 vG~~~vGKSsLi~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~-----------~~~~~~~ 94 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGL-FPPGQ-GATIGVDFMIKTVEI-NGEKVKLQIWDTA---GQER-----------FRSITQS 94 (201)
T ss_dssp EESTTSSHHHHHHHHHHSS-CCTTC-CCCCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGG-----------GHHHHGG
T ss_pred ECcCCCCHHHHHHHHHhCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---CcHH-----------HHHHHHH
Confidence 6999999999999999875 43221 223333444445566 774 78999999 8521 1112334
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||+++.++-+-+. ...+..+..... .-..+|||.|+.|..... . + .....+.+....+-
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~----v---~~~~~~~~~~~~~~ 163 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERR--E----V---SQQRAEEFSEAQDM 163 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC--S----S---CHHHHHHHHHHHTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHcCC
Confidence 5678999999999863322111 122333333221 235688999999975431 1 1 11234455555665
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+...-+
T Consensus 164 ~~~~~Sa~ 171 (201)
T 2ew1_A 164 YYLETSAK 171 (201)
T ss_dssp CEEECCTT
T ss_pred EEEEEeCC
Confidence 66555443
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.71 E-value=2.5e-08 Score=100.33 Aligned_cols=111 Identities=12% Similarity=0.011 Sum_probs=75.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccc----------------ccc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFK----------------SKV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~----------------s~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.+||||||+.|.|++..... +.. ...+.|.........+ .+..+++|||| |..|
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP---G~~d 94 (528)
T 3tr5_A 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP---GHAD 94 (528)
T ss_dssp EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC---CSTT
T ss_pred ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC---Cchh
Confidence 6999999999999998321110 000 0012333344456678 89999999999 9876
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.. . +. ..+....|++|+|+++....+.+....+..+... -..+||++|+.|....
T Consensus 95 f~--~-----~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 95 FT--E-----DT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CC--H-----HH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred HH--H-----HH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence 43 1 12 2234578999999999867888777777665542 3578999999997543
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.70 E-value=1.6e-08 Score=97.55 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=66.3
Q ss_pred CCCCCCcHHHHHHHHHCCCcccc-ccC-----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKS-KVG-----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s-~~s-----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|.+|+||||++|.|+|...... +.. .......|....... .++.+++|||| |..+
T Consensus 14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtP---Gh~~-- 87 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAP---GHEV-- 87 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECC---CCGG--
T ss_pred ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECC---CcHH--
Confidence 69999999999999999532110 000 000000111100011 23789999999 8422
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+. ....++|++|||+++...+ ..+....+..+.. +| .+++||++|+.|....
T Consensus 88 -----~~~~~~----~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~---~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 88 -----LMATML----SGAALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVVSK 144 (403)
T ss_dssp -----GHHHHH----HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSCH
T ss_pred -----HHHHHH----HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cC---CCCEEEEEECccccch
Confidence 222222 2336799999999998555 4445555544433 33 2579999999998754
No 149
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.70 E-value=1e-08 Score=85.47 Aligned_cols=110 Identities=16% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ .+.........+ +|. .+.++||| |..+... ....
T Consensus 14 ~G~~~~GKssl~~~~~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~~ 75 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNT-FPTDYVP--TVFDNFSANVVV-NGATVNLGLWDTA---GQEDYNR-----------LRPL 75 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CC------------CBCCCC--------CEEECCC---C-CTTTT-----------TGGG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCCC--eeeeeEEEEEEE-CCEEEEEEEEECC---CChhhhh-----------hHHh
Confidence 6999999999999999875 4332211 111111111223 444 45699999 8643221 1123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
...+.|++|||+++.++-+-+.. ..+..+...++ ...++||.|+.|....
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence 45688999999998633222221 23344444322 4578999999997654
No 150
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.69 E-value=2.2e-08 Score=92.30 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=82.0
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC-----CCCCceeEEEEEEEeCC----eEEEEEeCCCCCCCCCCCc---CHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS-----SEDTKTCEMQRTMLKDG----QVVNVIDTPAIARLFDSSA---DFEF 69 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~-----~svT~~c~~~~~~~~~G----r~v~VIDTP~~~Gl~Dt~~---~~~~ 69 (307)
++|++|+||||++|+|+|.....++... .+.+.. ....+.++.. ..++|+||| ||.+... ..+.
T Consensus 7 lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~---~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTP---GFGDQINNENCWEP 82 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCC---C--CCSBCTTCSHH
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEech---hhhhhcccHHHHHH
Confidence 5899999999999999997543332100 011111 1111222111 378999999 8865321 1122
Q ss_pred HHHH----HHHHHH-hcCC---------CCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972 70 VSKE----IVKCIG-MAKD---------GIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN 134 (307)
Q Consensus 70 i~~e----I~kcv~-ls~p---------Gpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~ 134 (307)
+... ..+... ..+. ..|+.||+++-. ..++..|...++.+.. . ..+|+|+|++|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-----~-~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-----V-VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-----T-SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-----c-CcEEEEEeccccCCH-
Confidence 2222 222111 1111 358888888643 4789999888877765 2 789999999999976
Q ss_pred cccHHHhcCCCCCchHHHHHHhcCCeEEEE
Q 044972 135 DETLEDYLGPECPKPLKEILQLCDNRRVLF 164 (307)
Q Consensus 135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~f 164 (307)
..+..+.. .+++.+...+-.++-|
T Consensus 156 -~e~~~~k~-----~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 -EEKSEFKQ-----RVRKELEVNGIEFYPQ 179 (270)
T ss_dssp -HHHHHHHH-----HHHHHHHHTTCCCSSC
T ss_pred -HHHHHHHH-----HHHHHHHHcCccccCC
Confidence 44555443 3555566666555543
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.69 E-value=2.4e-08 Score=84.34 Aligned_cols=142 Identities=12% Similarity=-0.025 Sum_probs=78.7
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.+++.. |..... .|.... .....+ ++ ..+.++||| |..+... ...
T Consensus 13 ~G~~~vGKSsli~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~ 73 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDC-FPENYV---PTVFENYTASFEI-DTQRIELSLWDTS---GSPYYDN-----------VRP 73 (184)
T ss_dssp EESTTSSHHHHHHHHHHSC-CCSSCC---CCSEEEEEEEEEC-SSCEEEEEEEEEC---CSGGGTT-----------TGG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEEEE-CCEEEEEEEEECC---CChhhhh-----------hHH
Confidence 6999999999999999865 432221 122221 122344 44 478999999 8632110 012
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCC---C-CCchHHHH
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGP---E-CPKPLKEI 153 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~---~-~~~~Lk~L 153 (307)
....+.|++|||+++.++-+-++ ...+..+.... --..+|||.|+.|...+. ..+.++-.. . .....+.+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHHHHH
Confidence 34578999999999873322222 12223333332 135789999999976541 222222110 0 11235566
Q ss_pred HHhcC-CeEEEEcCC
Q 044972 154 LQLCD-NRRVLFDNK 167 (307)
Q Consensus 154 i~~Cg-~R~~~fnNk 167 (307)
.+..+ ..|+...-+
T Consensus 150 ~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 150 AKQIGAATYIECSAL 164 (184)
T ss_dssp HHHHTCSEEEECBTT
T ss_pred HHHcCCcEEEEeeec
Confidence 66665 355554444
No 152
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.68 E-value=1.4e-07 Score=80.28 Aligned_cols=135 Identities=13% Similarity=-0.004 Sum_probs=78.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... .|.........+ +|. .+.++||| |..+.. .
T Consensus 25 ivG~~~vGKSsL~~~~~~~~-~~~~~~---~t~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~------------~-- 82 (184)
T 3ihw_A 25 IVGNLSSGKSALVHRYLTGT-YVQEES---PEGGRFKKEIVV-DGQSYLLLIRDEG---GPPELQ------------F-- 82 (184)
T ss_dssp EECCTTSCHHHHHHHHHHSS-CCCCCC---TTCEEEEEEEEE-TTEEEEEEEEECS---SSCCHH------------H--
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCcC---CCcceEEEEEEE-CCEEEEEEEEECC---CChhhh------------e--
Confidence 37999999999999999875 432222 232222345566 885 45669999 874311 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
..+.|++|||+++.++-+-++ ...+..+....+ .....+|||.|+.|........ + .......+....+
T Consensus 83 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~----v---~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 83 --AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRV----I---DDSRARKLSTDLK 152 (184)
T ss_dssp --HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCC----S---CHHHHHHHHHHTT
T ss_pred --ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccc----c---CHHHHHHHHHHcC
Confidence 124799999999874322222 222223332211 1235789999999975321011 1 1234566777776
Q ss_pred -CeEEEEcCCC
Q 044972 159 -NRRVLFDNKT 168 (307)
Q Consensus 159 -~R~~~fnNk~ 168 (307)
-.|+...-++
T Consensus 153 ~~~~~e~Sa~~ 163 (184)
T 3ihw_A 153 RCTYYETCATY 163 (184)
T ss_dssp TCEEEEEBTTT
T ss_pred CCeEEEecCCC
Confidence 5666665544
No 153
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.68 E-value=6.5e-08 Score=80.56 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |.. ..+ .+. ........+ +|. .+.++||| |... . .
T Consensus 12 ~vG~~~vGKTsli~~l~~~~-~~~-~~~-t~~-~~~~~~~~~-~~~~~~l~i~Dt~---G~~~----~--------~--- 68 (178)
T 2iwr_A 12 VLGDARSGKSSLIHRFLTGS-YQV-LEK-TES-EQYKKEMLV-DGQTHLVLIREEA---GAPD----A--------K--- 68 (178)
T ss_dssp EECCGGGCHHHHHHHHHHSC-CCC-CSS-CSS-SEEEEEEEE-TTEEEEEEEEECS---SSCC----H--------H---
T ss_pred EECCCCCCHHHHHHHHHhCC-CCC-cCC-Ccc-eeEEEEEEE-CCEEEEEEEEECC---CCch----h--------H---
Confidence 36999999999999999876 432 111 111 122334455 664 57889999 9643 0 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccc-cCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKK-VFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~-~~~~~IVLfT~~D~L 131 (307)
...+.|++|||+++.++-+-+... .+.++..+.... .-..+|||.|+.|..
T Consensus 69 -~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 69 -FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 123579999999987433322222 222344443221 235789999999974
No 154
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.68 E-value=2.3e-08 Score=98.54 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=79.6
Q ss_pred CCCCCCcHHHHHHHHHCCC-cccc-------------ccC---------------CCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKS-------------KVG---------------SSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s-------------~~s---------------~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+|||||+|.|++.. .|.. +.. ..+.|..+....... +++.+++||
T Consensus 13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~~~iiD 91 (458)
T 1f60_A 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQVTVID 91 (458)
T ss_dssp EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCceEEEEE
Confidence 6999999999999999751 1210 000 124555554455566 889999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCH-------HHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSE-------EEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~-------ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |.-+ ..+.+.....++|++|||+++.....+ +....+..+. ..| ..++||++|
T Consensus 92 tP---Gh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~iivviN 153 (458)
T 1f60_A 92 AP---GHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLIVAVN 153 (458)
T ss_dssp CC---CCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEEEEEE
T ss_pred CC---CcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeEEEEEE
Confidence 99 9532 122233456789999999998632211 3333333222 222 357999999
Q ss_pred cCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972 127 RGDELEDNDETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
+.|....+...++... ..++.+++..|
T Consensus 154 K~Dl~~~~~~~~~~i~-----~~~~~~l~~~g 180 (458)
T 1f60_A 154 KMDSVKWDESRFQEIV-----KETSNFIKKVG 180 (458)
T ss_dssp CGGGGTTCHHHHHHHH-----HHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHH-----HHHHHHHHHcC
Confidence 9998742112233222 24667777665
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.66 E-value=2e-07 Score=90.04 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-CCCCCCceeEEEEEEEeC----------------C------eEEEEEeCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-GSSEDTKTCEMQRTMLKD----------------G------QVVNVIDTPAIAR 59 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-s~~svT~~c~~~~~~~~~----------------G------r~v~VIDTP~~~G 59 (307)
+|.+|+||||++|.|+|........ ...+.|.........+.. | +.+++|||| |
T Consensus 16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP---G 92 (410)
T 1kk1_A 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP---G 92 (410)
T ss_dssp ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS---S
T ss_pred ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECC---C
Confidence 6999999999999999864321111 112344433322222200 2 789999999 8
Q ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
. ++....+ ......+|++|||+++...+ ..+....+..+.. +| ..++||++|+.|....
T Consensus 93 h-------~~f~~~~----~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~---~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 93 H-------EALMTTM----LAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IG---QKNIIIAQNKIELVDK 152 (410)
T ss_dssp H-------HHHHHHH----HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSCH
T ss_pred h-------HHHHHHH----HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEECccCCCH
Confidence 4 2233332 23345789999999997555 5565655555443 33 3578999999998754
No 156
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.65 E-value=7.7e-09 Score=88.68 Aligned_cols=113 Identities=13% Similarity=-0.002 Sum_probs=66.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++........ ...|.........+ +| ..+.++||| |..+.... ..
T Consensus 38 vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~ 100 (199)
T 3l0i_B 38 LIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTA---GQERFRTI-----------TS 100 (199)
T ss_dssp EECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCT---TCTTCCCC-----------SC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECC---CcHhHHHH-----------HH
Confidence 36999999999999999876432211 12344455555666 77 478999999 85432211 11
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|||+++.++-+-+ .+..++..+.... .-..+|||.|+.|....
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 2346789999999987432222 2223333332221 13578999999997644
No 157
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.65 E-value=5.8e-08 Score=100.48 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=74.5
Q ss_pred CCCCCCcHHHHHHHHHCCC-cccc-----------ccC----CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKS-----------KVG----SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s-----------~~s----~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+||||+.|.|++.. .+.. ... ..+.|..+......| ++..+++|||| |..|..
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP---G~~df~-- 89 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTP---GHVDFT-- 89 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCC---CCSSCC--
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECc---CCcchH--
Confidence 6999999999999999532 1110 000 123444455566778 89999999999 987632
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
. ++.+++ ...|++|||+++....+.+....+..+.. .-...|||+|+.|....
T Consensus 90 -~----~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~-----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 90 -V----EVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATT-----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -H----HHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCCEEEEEECTTSTTC
T ss_pred -H----HHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHH-----cCCCEEEEEECCCcccc
Confidence 1 223333 24899999999876788887777766554 24578999999998754
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.64 E-value=6.3e-08 Score=94.54 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred CCCCCCcHHHHHHHHHCCC-cccccc----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKV----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||++|.|++.. .|.... ...+.|.........+ .++.+++||
T Consensus 12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~~~~iiD 90 (435)
T 1jny_A 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYFFTIID 90 (435)
T ss_dssp EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCEEEECC
T ss_pred EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCeEEEEEE
Confidence 6999999999999999751 221000 0123454444445567 889999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |..+. ... +.....+.|++|||+++... +..+.+..+..+.. +| ..++||+.|
T Consensus 91 tp---G~~~f-------~~~----~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~iivviN 152 (435)
T 1jny_A 91 AP---GHRDF-------VKN----MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQLIVAVN 152 (435)
T ss_dssp CS---SSTTH-------HHH----HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTCEEEEE
T ss_pred CC---CcHHH-------HHH----HHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEE
Confidence 99 97541 112 23456789999999998743 22233333333322 22 356899999
Q ss_pred cCCCCCCC--cccHHHhcCCCCCchHHHHHHhcC
Q 044972 127 RGDELEDN--DETLEDYLGPECPKPLKEILQLCD 158 (307)
Q Consensus 127 ~~D~L~~~--~~sie~yl~~~~~~~Lk~Li~~Cg 158 (307)
+.|....+ ...++... ..++.++..++
T Consensus 153 K~Dl~~~~~~~~~~~~~~-----~~i~~~~~~~~ 181 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIV-----DQVSKFMRSYG 181 (435)
T ss_dssp CGGGSSSTTCHHHHHHHH-----HHHHHHHHHTT
T ss_pred cccCCCccccHHHHHHHH-----HHHHHHHHHcC
Confidence 99987521 11222222 24677777766
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.62 E-value=4.9e-07 Score=87.31 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-CCCCCCceeEEEEEEEe--------------C--C------eEEEEEeCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-GSSEDTKTCEMQRTMLK--------------D--G------QVVNVIDTPAIAR 59 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-s~~svT~~c~~~~~~~~--------------~--G------r~v~VIDTP~~~G 59 (307)
+|.+|+||||++|.|+|........ ...+.|.........+. + | +.+++|||| |
T Consensus 14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP---G 90 (408)
T 1s0u_A 14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSP---G 90 (408)
T ss_dssp ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECS---S
T ss_pred EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECC---C
Confidence 6999999999999999864321111 11233443322221110 1 2 789999999 8
Q ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
. ++.. +.+......+|++|||+++...+ ..+....+..+. .+| ..++||++|+.|....
T Consensus 91 h-------~~f~----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 91 H-------ETLM----ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVDE 150 (408)
T ss_dssp H-------HHHH----HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSCT
T ss_pred H-------HHHH----HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCCH
Confidence 4 2222 22334456789999999997555 555555555443 333 3578999999998754
No 160
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=2.4e-08 Score=92.54 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=39.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i 70 (307)
.+|.|||||||++|+|+|.+.+.++.. .++|+.++. .. -+..+.+|||| |+.++...+.+.
T Consensus 125 ~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~Dtp---G~~~~~~~~~~~ 185 (282)
T 1puj_A 125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW--VK--VGKELELLDTP---GILWPKFEDELV 185 (282)
T ss_dssp EEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECC---CCCCSCCCCHHH
T ss_pred EEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEE--EE--eCCCEEEEECc---CcCCCCCCCHHH
Confidence 369999999999999999987765432 346665542 22 35689999999 999887655543
No 161
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.61 E-value=8.7e-09 Score=98.94 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCCCCCCcHHHHHHHHHCCCccc----cccCCC-CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH-HHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFK----SKVGSS-EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV-SKEIV 75 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~----s~~s~~-svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i-~~eI~ 75 (307)
++|.|||||||++|+|+|...+. ...+.. ++|+.... ..+ +..+.||||| |++++..-.+.+ .+++.
T Consensus 165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtP---G~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTP---GIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECC---CBCCTTSGGGGSCHHHHH
T ss_pred EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCC---CcCcHHHHHHHhhHHHHH
Confidence 47999999999999999975332 111222 34433322 233 3349999999 999875322222 23344
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.++. ...++++++++..+..+.......+..+. + .-..+++++|+.|.+..
T Consensus 238 ~~~~--~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LITP--TKEIKPMVFQLNEEQTLFFSGLARFDYVS---G--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHSC--SSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred Hhcc--ccccCceEEEEcCCCEEEEcceEEEEEec---C--CCceEEEEecCcccccc
Confidence 3332 34677777777663110000100011111 1 23468999999998865
No 162
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.61 E-value=7.1e-08 Score=84.23 Aligned_cols=144 Identities=10% Similarity=-0.069 Sum_probs=80.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.+++.. |..... .|.... .....+ ++ ..+.++||| |...... ..
T Consensus 32 vvG~~~vGKSsL~~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~ 92 (214)
T 3q3j_B 32 LVGDVQCGKTAMLQVLAKDC-YPETYV---PTVFENYTACLET-EEQRVELSLWDTS---GSPYYDN-----------VR 92 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSC-CCSSCC---CCSEEEEEEEEEC---CEEEEEEEEEC---CSGGGTT-----------TG
T ss_pred EECcCCCCHHHHHHHHhcCC-CCCCcC---CeeeeeEEEEEEE-CCEEEEEEEEECC---CCHhHHH-----------HH
Confidence 47999999999999999876 433221 122221 222334 44 478899999 8532110 11
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc----CCCCCchHHH
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL----GPECPKPLKE 152 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl----~~~~~~~Lk~ 152 (307)
.....+.|++|||+++.++-+-++ ...+..+.... --..+|||.|+.|...+. .+..... +.-.......
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccch-hhhhhhcccccCccCHHHHHH
Confidence 234568999999999974332222 22334444432 235789999999976541 1111110 0001234566
Q ss_pred HHHhcCC-eEEEEcCCC
Q 044972 153 ILQLCDN-RRVLFDNKT 168 (307)
Q Consensus 153 Li~~Cg~-R~~~fnNk~ 168 (307)
+.+..+. .|+...-++
T Consensus 169 ~~~~~~~~~~~e~SA~~ 185 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFT 185 (214)
T ss_dssp HHHHHTCSEEEECCTTT
T ss_pred HHHHcCCCEEEEeccCC
Confidence 6666666 665555443
No 163
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.61 E-value=1e-07 Score=82.01 Aligned_cols=142 Identities=15% Similarity=0.011 Sum_probs=79.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.... ...
T Consensus 15 ~G~~~~GKTsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~~ 76 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNK-FPTDYI--PTVFDNFSANVAV-DGQIVNLGLWDTA---GQEDYSRL-----------RPL 76 (212)
T ss_dssp EESTTSSHHHHHHHHHHSC-CCSSCC--CSSCCCEEEEEEC-SSCEEEEEEECCC---CCCCCCC-------------CG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCccCC--CccceeEEEEEEE-CCEEEEEEEEECC---CcHHHHHH-----------HHh
Confidence 6999999999999999765 433221 1111112223345 664 88999999 87543210 123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcC-CCCCchHHHHHHhc
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLG-PECPKPLKEILQLC 157 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~-~~~~~~Lk~Li~~C 157 (307)
...+.|++|||+++.++-+-+. ...+..+....+ -..+|||.|+.|.... ..+...-. .-.......+....
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHHHHHc
Confidence 4568999999999863222111 123333433322 4578999999997654 21110000 00123345566666
Q ss_pred CC-eEEEEcCC
Q 044972 158 DN-RRVLFDNK 167 (307)
Q Consensus 158 g~-R~~~fnNk 167 (307)
+. .|+...-+
T Consensus 152 ~~~~~~~~Sa~ 162 (212)
T 2j0v_A 152 GAAAYIECSSK 162 (212)
T ss_dssp TCSEEEECCTT
T ss_pred CCceEEEccCC
Confidence 64 56554443
No 164
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.59 E-value=1.5e-07 Score=95.88 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=60.3
Q ss_pred CeEEEEEeCCCCCCCCCC--CcCHHHHHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEE
Q 044972 46 GQVVNVIDTPAIARLFDS--SADFEFVSKEIVKCIGM-AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMI 122 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt--~~~~~~i~~eI~kcv~l-s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~I 122 (307)
...++++|.| |+... ..-+......+...+.. ...+..++|+|++.+..+... .+++.+..+- .....+|
T Consensus 146 ~p~LlLlDeP---Gi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~l~la~~v~--~~g~rtI 218 (608)
T 3szr_A 146 VPDLTLIDLP---GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EALSMAQEVD--PEGDRTI 218 (608)
T ss_dssp SCCEEEEECC---C------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HHHHHHHHHC--SSCCSEE
T ss_pred CCceeEeeCC---CccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HHHHHHHHHh--hcCCceE
Confidence 3569999999 88753 22222333444444433 234456777777765344322 2444444431 1246899
Q ss_pred EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972 123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD 170 (307)
Q Consensus 123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~ 170 (307)
+|+|++|.+.. .+.+.++. .+..-+-.+...|+++-|+...
T Consensus 219 ~VlTK~Dlv~~--g~~~~~~~-----~l~~~~~~l~~g~~~v~nr~~~ 259 (608)
T 3szr_A 219 GILTKPDLVDK--GTEDKVVD-----VVRNLVFHLKKGYMIVKCRGQQ 259 (608)
T ss_dssp EEEECGGGSSS--SSTTCCCC-----CC--CCSCCSSCEECCCCSCTT
T ss_pred EEecchhhcCc--ccHHHHHH-----HHhCcccccCceEEEEecCchh
Confidence 99999999865 33332322 1233344567788888887643
No 165
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=7.6e-09 Score=99.33 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=67.2
Q ss_pred CCCCCCCcHHHHHHHHHCC-----CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGR-----RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVK 76 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~-----~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k 76 (307)
++|.|||||||++|+|+|. ....+.. ..++|+.... ..+ +..+.||||| |+.+.......+..+...
T Consensus 167 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~--~~~--~~~~~liDtP---G~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIE--IPL--ESGATLYDTP---GIINHHQMAHFVDARDLK 238 (369)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEE--EEC--STTCEEEECC---SCCCCSSGGGGSCTTTHH
T ss_pred EEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEE--EEe--CCCeEEEeCC---CcCcHHHHHHHHhHHHHH
Confidence 4799999999999999997 2222221 2234544332 223 3458999999 998765322222222222
Q ss_pred HHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 77 CIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 77 cv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.+ .....+|+++++++.+.. |-. ....+.. +-+ .-..+++++|+.|.+..
T Consensus 239 ~~-~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~---l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 II-TPKREIHPRVYQLNEGQTLFFG-GLARLDY---IKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEET-TTEEEEE---EES--SSEEEEEEECTTSCEEE
T ss_pred HH-hcccccCceEEEEcCCceEEEC-CEEEEEE---ccC--CCceEEEEecCCccccc
Confidence 22 223578999999987411 100 1000111 111 12468899999998754
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.01 E-value=5.6e-09 Score=89.73 Aligned_cols=111 Identities=18% Similarity=0.035 Sum_probs=65.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|.+||||||++|.+++.. |..... +.+.........+ +|. .+.++||| |..+.. ....
T Consensus 35 v~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~ 96 (204)
T 3th5_A 35 VVGDGAVGKTCLLISYTTNA-FPGEYI--PTVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD-----------RLRP 96 (204)
Confidence 47999999999999999765 432211 1121222222334 554 45599999 864321 1111
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
....+.|++|||+++.++-+-++ ...+..+....+ ...+|||+|+.|....
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 23457899999999864332222 123333333222 4578999999997654
No 167
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.59 E-value=2.8e-07 Score=78.39 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=75.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.+++.. |..... .|.... .....+ ++. .+.++||| |...... + ..
T Consensus 26 vvG~~~vGKTsLi~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~----~----~~-- 87 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTKR-FISEYD---PNLEDTYSSEETV-DHQPVHLRVMDTA---DLDTPRN----C----ER-- 87 (187)
T ss_dssp EECCTTSSHHHHHHHHHHSS-CCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECC---C---CCC----T----HH--
T ss_pred EECCCCCcHHHHHHHHHhCC-CCcccC---CCccceeeEEEEE-CCEEEEEEEEECC---CCCcchh----H----HH--
Confidence 37999999999999999876 543322 222221 223445 654 67789999 8654321 1 11
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL 156 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~ 156 (307)
...+.|++|||+++.++-+-+. ...+..+...... .....+|||.|+.|..... . + .......+.+.
T Consensus 88 --~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~ 156 (187)
T 3c5c_A 88 --YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR--Q----V---TKAEGVALAGR 156 (187)
T ss_dssp --HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC--S----S---CHHHHHHHHHH
T ss_pred --HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC--c----c---CHHHHHHHHHH
Confidence 1246899999999873222111 1122333332211 1245689999999975421 1 1 11234566666
Q ss_pred cCCeEEEEcC
Q 044972 157 CDNRRVLFDN 166 (307)
Q Consensus 157 Cg~R~~~fnN 166 (307)
.+-.|+...-
T Consensus 157 ~~~~~~e~Sa 166 (187)
T 3c5c_A 157 FGCLFFEVSA 166 (187)
T ss_dssp HTCEEEECCS
T ss_pred cCCcEEEEee
Confidence 6666665554
No 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.57 E-value=1.6e-06 Score=74.53 Aligned_cols=140 Identities=17% Similarity=0.069 Sum_probs=78.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.++|... |.. .+ ..|.........+ +|. .+.++||| |..+.. ..+ ..
T Consensus 28 vvG~~~vGKSsLi~~l~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~l~i~Dt~---g~~~~~---~~~----~~-- 91 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFGGLQGDSAH-EP--ENPEDTYERRIMV-DKEEVTLVVYDIW---EQGDAG---GWL----RD-- 91 (195)
T ss_dssp EECSTTSSHHHHHHHTCCEECCGGG-TT--TSCTTEEEEEEEE-TTEEEEEEEECCC---CCSGGG---HHH----HH--
T ss_pred EECCCCCCHHHHHHHHHhccCCccC-CC--CcccceEEEEEEE-CCEEEEEEEEecC---CCccch---hhh----HH--
Confidence 379999999999999987542 322 11 2233333444567 776 45667999 874321 111 11
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC 157 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C 157 (307)
....+.|++|||+++.++-+-+. ...+..+....+ .....+|||.|+.|.......+. ...+.+.+..
T Consensus 92 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~a~~~ 160 (195)
T 3cbq_A 92 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSL---------EEGRHLAGTL 160 (195)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCH---------HHHHHHHHHT
T ss_pred -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCH---------HHHHHHHHHh
Confidence 11236799999999873222111 112222322221 12457899999999764311121 2344566666
Q ss_pred CCeEEEEcCCC
Q 044972 158 DNRRVLFDNKT 168 (307)
Q Consensus 158 g~R~~~fnNk~ 168 (307)
+-.|+...-++
T Consensus 161 ~~~~~e~Sa~~ 171 (195)
T 3cbq_A 161 SCKHIETSAAL 171 (195)
T ss_dssp TCEEEEEBTTT
T ss_pred CCEEEEEcCCC
Confidence 66676666554
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.55 E-value=4.6e-08 Score=85.15 Aligned_cols=143 Identities=12% Similarity=-0.021 Sum_probs=79.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.+|.+||||||++|.+++.. |.... ..|.... .....+ ++ ..+.++||| |..+... ..
T Consensus 33 vvG~~~vGKSsLi~~l~~~~-~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~ 93 (205)
T 1gwn_A 33 VVGDSQCGKTALLHVFAKDC-FPENY---VPTVFENYTASFEI-DTQRIELSLWDTS---GSPYYDN-----------VR 93 (205)
T ss_dssp EEESTTSSHHHHHHHHHHSC-CCSSC---CCCSEEEEEEEEES-SSSEEEEEEEEEC---CSGGGTT-----------TG
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCCc---CCccceeEEEEEEE-CCEEEEEEEEeCC---CcHhhhH-----------HH
Confidence 36999999999999999865 43221 1222221 122334 44 478999999 8632110 01
Q ss_pred HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCC---C-CCchHHH
Q 044972 79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGP---E-CPKPLKE 152 (307)
Q Consensus 79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~---~-~~~~Lk~ 152 (307)
.....+.|++|||+++.++-+-++ ...+..+.... .-..+|||.|+.|..... ..+.++... . .....+.
T Consensus 94 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 94 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccch-hhhhhhcccccCCCCHHHHHH
Confidence 234578999999999873322222 12233343332 135789999999976541 223322211 0 1123556
Q ss_pred HHHhcC-CeEEEEcCC
Q 044972 153 ILQLCD-NRRVLFDNK 167 (307)
Q Consensus 153 Li~~Cg-~R~~~fnNk 167 (307)
+.+..+ ..|+...-+
T Consensus 170 ~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 170 MAKQIGAATYIECSAL 185 (205)
T ss_dssp HHHHHTCSEEEECCTT
T ss_pred HHHHcCCCEEEEeeec
Confidence 666666 355544443
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.52 E-value=1.4e-07 Score=79.96 Aligned_cols=112 Identities=15% Similarity=-0.026 Sum_probs=57.1
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEE------eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTML------KDGQVVNVIDTPAIARLFDSSADFEFVSKEIV 75 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~------~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~ 75 (307)
+|++||||||++|.++|.. .|.... ..|.........+ .....+.++||| |..... .+.
T Consensus 8 vG~~gvGKStLl~~l~~~~~~~~~~~---~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~~~~--------~~~ 73 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTKKSDLGMQ---SATVGIDVKDWPIQIRDKRKRDLVLNVWDFA---GREEFY--------STH 73 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEEC---SHHHHH--------TTS
T ss_pred ECCCCCCHHHHHHHHhcCCCccCCCc---ceeccEEeEEeeeccccCCCCceEEEEEecC---CCHHHH--------Hhh
Confidence 6999999999999999963 454321 1222222211111 024588999999 853110 010
Q ss_pred HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
. ....+.|++++|+++.++++.- ...-.++..+.-...-..+|||.|+.|..+
T Consensus 74 ~---~~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 74 P---HFMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp H---HHHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred H---HHccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 1 1123578999999886332211 112233333221111346788889999654
No 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.50 E-value=1.8e-07 Score=85.60 Aligned_cols=143 Identities=17% Similarity=0.041 Sum_probs=81.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.... .+.|.........+ +|..+. ++||| |..+.. .....
T Consensus 161 ~G~~~~GKssli~~~~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~ 222 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNA-FPGEY--IPTVFDNYSANVMV-DGKPVNLGLWDTA---GLEDYD-----------RLRPL 222 (332)
T ss_dssp EESTTSSHHHHHHHHHHSC-CCCSC--CCCSEEEEEEEEEE-TTEEEEEEEEEEC---CCGGGT-----------TTGGG
T ss_pred ECCCCCChHHHHHHHHhCC-CCccc--CCcccceeEEEEEE-CCEEEEEEEEeCC---Cchhhh-----------HHHHH
Confidence 6999999999999999765 43222 12222222333455 777655 99999 864321 11123
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc----CCCCCchHHHHH
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL----GPECPKPLKEIL 154 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl----~~~~~~~Lk~Li 154 (307)
...+.|++|||+++.++.+-++. ..+..+....+ ...+|||.|+.|..... ...+.+. ..-.....+.+.
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHHHHHH
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHHHHHH
Confidence 45689999999998743332222 23344444332 46799999999976541 1222211 110123345566
Q ss_pred HhcCC-eEEEEcCC
Q 044972 155 QLCDN-RRVLFDNK 167 (307)
Q Consensus 155 ~~Cg~-R~~~fnNk 167 (307)
+..+. .|+....+
T Consensus 299 ~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 299 KEIGAVKYLECSAL 312 (332)
T ss_dssp HHTTCSEEEECCTT
T ss_pred HHcCCcEEEEecCC
Confidence 66554 55554443
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.50 E-value=4.4e-07 Score=91.21 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=69.9
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc--------------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV--------------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~--------------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|.+|+||||+.|.|++........ ...+.|.........+ ++..+++|||| |..|
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP---G~~d 94 (529)
T 2h5e_A 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP---GHED 94 (529)
T ss_dssp EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC---CSTT
T ss_pred ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC---CChh
Confidence 6999999999999999642211000 0112232233345567 89999999999 9866
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
-. .++.+ +....|++|||+++...........+..+.. .-..+||++|+.|....
T Consensus 95 f~-------~~~~~----~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 95 FS-------EDTYR----TLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CC-------HHHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred HH-------HHHHH----HHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence 32 12222 3357899999999876666665555444332 12358999999997654
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.49 E-value=2.2e-07 Score=96.14 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccc------ccc---------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRR-AFK------SKV---------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~------s~~---------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|.+|+||||+.|.|+... .+. .+. .....|.........+ .+..+++|||| |..|-
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP---G~~df--- 90 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP---GHVDF--- 90 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC---SSTTC---
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc---Cccch---
Confidence 6999999999999999321 110 000 0113444445556678 89999999999 98652
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..+..+++. ..|++|+|+++....+.+....+..+.. .-...+|++|+.|....
T Consensus 91 ----~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 ----TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ----HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-----TTCCEEEEEECTTSTTC
T ss_pred ----HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHH-----cCCCEEEEEECCCcccC
Confidence 123333332 4789999999876778777766665554 24568899999998754
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.48 E-value=1.3e-07 Score=90.76 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+|+||||++|.|+ . .+.|.........+ +++.+++|||| |..|- ...+... .
T Consensus 27 iG~~d~GKSTL~~~L~-----~-----~giTi~~~~~~~~~-~~~~i~iiDtP---Gh~~f-------~~~~~~~----~ 81 (370)
T 2elf_A 27 IGTEKSGRTSLAANLG-----K-----KGTSSDITMYNNDK-EGRNMVFVDAH---SYPKT-------LKSLITA----L 81 (370)
T ss_dssp EESTTSSHHHHHHTTS-----E-----EEEESSSEEEEECS-SSSEEEEEECT---TTTTC-------HHHHHHH----H
T ss_pred ECCCCCCHHHHHHHHH-----h-----CCEEEEeeEEEEec-CCeEEEEEECC---ChHHH-------HHHHHHH----H
Confidence 6999999999999998 1 12343444455667 88899999999 97652 1222222 2
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe-cCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT-RGDE 130 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT-~~D~ 130 (307)
.++|++|||++ ......+.+..+..+.. +| ..+.||++| +.|.
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~---i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDL-LG---FKHGIIALTRSDST 125 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TT---CCEEEEEECCGGGS
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cC---CCeEEEEEEeccCC
Confidence 56899999999 64555555555554443 33 345688999 8887
No 175
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=1.6e-06 Score=76.59 Aligned_cols=113 Identities=19% Similarity=0.054 Sum_probs=65.6
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.+||||||++|.++|.. .|.+... +++.........+ +|.. +.++||| |... . ..-+ ..
T Consensus 43 vG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i~~-~~~~~~l~~~Dt~---g~~~------~-~~~l---~~ 106 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTLMV-DGESATIILLDMW---ENKG------E-NEWL---HD 106 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCT---TTTH------H-HHHH---HH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEEEE-CCeeeEEEEeecC---CCcc------h-hhhH---HH
Confidence 6999999999999999854 4544322 2223333444567 8865 5678999 7431 1 1111 12
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
....+.+++|+|+.+.++-+-+.. ..+..+..... ..-..+|||.|+.|..+
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 345678999999998733221111 11222222211 12357899999998653
No 176
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.45 E-value=2.7e-08 Score=100.38 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=76.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+|+||||++|.|++.+.... ...+.|.........+++|..+++|||| |..+.... .....
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTP---Ghe~f~~~-----------~~~~~ 73 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTP---GHAAFSAM-----------RARGT 73 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECS---SSCCTTTS-----------BBSSS
T ss_pred ECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECC---ChHHHHHH-----------HHHHH
Confidence 69999999999999998764333 2334555554444444467899999999 85432110 11244
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
.+.|++|||+++......+....+..+... -..+||+.|+.|...
T Consensus 74 ~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAE 118 (537)
T ss_dssp BSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred ccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence 678999999999877788777777666542 236899999999754
No 177
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.43 E-value=4.4e-07 Score=89.69 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCCCCcHHHHHHHHHCC-----------------CccccccCCCCCCceeEEEEEEEe--------CC--eEEEEEeC
Q 044972 2 CACEYIKICTTTGNSILGR-----------------RAFKSKVGSSEDTKTCEMQRTMLK--------DG--QVVNVIDT 54 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~-----------------~~F~s~~s~~svT~~c~~~~~~~~--------~G--r~v~VIDT 54 (307)
-+|++++|||+++|.|+|. ..|..+ +.|..|..+...|. +| ..|+|+||
T Consensus 72 V~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~----~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR----GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC----CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC----CCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 3799999999999999974 234433 35667777777771 22 57999999
Q ss_pred CCCCCCCCCCcCHHHHHHHHH-HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972 55 PAIARLFDSSADFEFVSKEIV-KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES 111 (307)
Q Consensus 55 P~~~Gl~Dt~~~~~~i~~eI~-kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~ 111 (307)
| |++|+..+.+ -...|- -++.++ .++|+-+ .+ .+.+.+...|..+.+
T Consensus 148 e---G~~~~~~~~~-~d~~ifal~~lLS----s~~IyN~-~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 148 Q---GTFDSQSTLR-DSATVFALSTMIS----SIQVYNL-SQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp E---CCCSSHHHHH-HHHHHHHHHHHHC----SEEEEEE-SS-SCCHHHHHHHHHHHH
T ss_pred C---cccccccchh-hhHHHHHHHHHHh----hHHHHhh-cc-cccHHHHHHHHHHHH
Confidence 9 9998754221 111222 122232 3555555 34 899998887777555
No 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.42 E-value=4.8e-07 Score=77.59 Aligned_cols=112 Identities=19% Similarity=0.057 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|.|||||||++|.++|. ..|.+... +.+.+.......+ +|.. +.++||+ |....... +. .
T Consensus 12 vG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~Dt~---~~~~~~~~-------~~---~ 75 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTLMV-DGESATIILLDMW---ENKGENEW-------LH---D 75 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEEEE-TTEEEEEEEECCC---CC----CT-------TG---G
T ss_pred ECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEEEE-CCeEEEEEEEEec---cCcchhhh-------HH---H
Confidence 799999999999999984 44554322 2223333344567 8874 4678999 75321000 11 0
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+.|++|+|+++.++-+-+.. ..+..+...... .-..+|||.++.|..
T Consensus 76 ~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 76 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV 127 (192)
T ss_dssp GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCG
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhh
Confidence 112346899999998743221211 122233332211 124577778888754
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.41 E-value=2.4e-08 Score=101.64 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=53.3
Q ss_pred CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+|||||+|.||+........ ...++|.........+ +++.++|||
T Consensus 183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~~i~iiD 261 (592)
T 3mca_A 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKKIYEIGD 261 (592)
T ss_dssp ECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------------CCE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCeEEEEEE
Confidence 6999999999999998642111100 0123455555555666 789999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-----C--CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-----F--SEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-----f--T~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |..+.... +.....++|++|||+++... | ..+....+..+.. +| ..++|||+|
T Consensus 262 TP---Gh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~iIvviN 323 (592)
T 3mca_A 262 AP---GHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEIVVSVN 323 (592)
T ss_dssp EE---SSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCEEEEEE
T ss_pred CC---ChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEe
Confidence 99 87542110 11233568999999988632 3 5555555554443 22 346899999
Q ss_pred cCCCCC
Q 044972 127 RGDELE 132 (307)
Q Consensus 127 ~~D~L~ 132 (307)
+.|...
T Consensus 324 KiDl~~ 329 (592)
T 3mca_A 324 KLDLMS 329 (592)
T ss_dssp CGGGGT
T ss_pred cccccc
Confidence 999765
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.41 E-value=9e-07 Score=82.42 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=67.1
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCC---C--CCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCH---HHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGS---S--EDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADF---EFV 70 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~---~--svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~i 70 (307)
.+|++||||||++|+|+|...|....-. . ..|.........+. +| ..++|+||| |+.+..... ..+
T Consensus 23 lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~---g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTP---GYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------------CTTH
T ss_pred EECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhh---hhhhhcCcHHHHHHH
Confidence 4799999999999999998666432100 0 01211111111110 22 478999999 885421100 111
Q ss_pred HHHH----HHHHHhcC---------CCCeEEEEEEeC-CCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972 71 SKEI----VKCIGMAK---------DGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE 136 (307)
Q Consensus 71 ~~eI----~kcv~ls~---------pGpha~LLVl~~-~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~ 136 (307)
...| ...+...+ +.+|++||++.. +..|...+...++.+. . ...++||++..|.+.. .
T Consensus 100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~--~~~iilV~~K~Dl~~~--~ 171 (301)
T 2qnr_A 100 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTLTL--K 171 (301)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----T--TSCEEEEECCGGGSCH--H
T ss_pred HHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----h--cCCEEEEEEeCCCCCH--H
Confidence 1111 12222222 234777777653 3248887754433331 1 2468999999997754 2
Q ss_pred cHHHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972 137 TLEDYLGPECPKPLKEILQLCDNRRVLFD 165 (307)
Q Consensus 137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fn 165 (307)
.+..+. ...+++++..+-.|+-+.
T Consensus 172 e~~~~~-----~~~~~~~~~~~~~~~e~S 195 (301)
T 2qnr_A 172 ERERLK-----KRILDEIEEHNIKIYHLP 195 (301)
T ss_dssp HHHHHH-----HHHHHHHHHTTCCCCCCC
T ss_pred HHHHHH-----HHHHHHHHHcCCeEEecC
Confidence 232221 134555666665554443
No 181
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.39 E-value=6.9e-07 Score=89.45 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=68.1
Q ss_pred CCCCCCcHHHHHHHHH------CCCccccccCCCCCCc-----------eeEEEE-----------------EEEeCCeE
Q 044972 3 ACEYIKICTTTGNSIL------GRRAFKSKVGSSEDTK-----------TCEMQR-----------------TMLKDGQV 48 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL------G~~~F~s~~s~~svT~-----------~c~~~~-----------------~~~~~Gr~ 48 (307)
+|.||||||||.|.|+ |.++..+......... ...... ..+ ++..
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~-~~~D 185 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN-ENFE 185 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH-TTCC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH-CCCc
Confidence 6999999999999999 8876433321110000 000000 012 6779
Q ss_pred EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972 49 VNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRG 128 (307)
Q Consensus 49 v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~ 128 (307)
++||||| |..... ..+..++...... -.||.+|||+++....+ ....+. .|.+. ....+||+|+.
T Consensus 186 vvIIDTp---G~~~~~---~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~----~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 186 IIIVDTS---GRHKQE---DSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAK----AFKDK-VDVASVIVTKL 250 (504)
T ss_dssp EEEEEEC---CCCTTC---HHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHH----HHHHH-HCCCCEEEECT
T ss_pred EEEEeCC---CCcccc---hhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHH----HHHhh-cCceEEEEeCC
Confidence 9999999 987532 3444555443322 26899999999863322 222222 34332 33368999999
Q ss_pred CCCCC
Q 044972 129 DELED 133 (307)
Q Consensus 129 D~L~~ 133 (307)
|....
T Consensus 251 D~~~~ 255 (504)
T 2j37_W 251 DGHAK 255 (504)
T ss_dssp TSCCC
T ss_pred ccccc
Confidence 97643
No 182
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.39 E-value=1e-07 Score=91.82 Aligned_cols=83 Identities=8% Similarity=-0.116 Sum_probs=50.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.|||||||++|.|+|.....+.. ..+|.....+...+ ++ ..+.|+||| |+.....
T Consensus 8 VG~pnvGKSTL~n~Lt~~~~~v~~~--p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtp---Gl~~~a~ 81 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIA---GLVAGAS 81 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECC---SCCTTHH
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCC--CCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECC---CCccccc
Confidence 7999999999999999987333222 12344444445555 44 479999999 9875321
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
. .+.+...+.....+.|++|+|+++.
T Consensus 82 ~----~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 82 K----GEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp H----HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred c----cchHHHHHHHHHHhcCeEEEEEecC
Confidence 0 1111111111235789999999885
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.39 E-value=2.3e-06 Score=73.24 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
.+|++||||||++|.|+|.. |.... ...++.........+ +|. .+.++||| |...... +. .
T Consensus 10 lvG~~g~GKSTLl~~l~~~~-~~~~~-~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~---g~~~~~~--------~~---~ 72 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNE-FNLES-KSTIGVEFATRSIQV-DGKTIKAQIWDTA---GQERYRR--------IT---S 72 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSC-CCC----CCCSCEEEEEEEEE-TTEEEEEEEEECS---SGGGTTC--------CC---H
T ss_pred EECcCCCCHHHHHHHHhcCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---Cchhhhh--------hh---H
Confidence 36999999999999999975 32211 112233444555667 886 45679999 8542211 00 1
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
....+++++|+|+++....+-++. ..+..+.... .....+++|.++.|..
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCG
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccc
Confidence 122468999999998633322221 1122222211 1245788999998864
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.35 E-value=5.5e-07 Score=88.84 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=61.3
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccc------------------------ccc----CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRR-AFK------------------------SKV----GSSEDTKTCEMQRTMLKDGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~------------------------s~~----s~~svT~~c~~~~~~~~~Gr~v~VID 53 (307)
+|.+|+||||++|.|++.. .|. ... ...+.|.........+ +++.+++||
T Consensus 49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~~~~iiD 127 (467)
T 1r5b_A 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHRRFSLLD 127 (467)
T ss_dssp EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSEEEEECC
T ss_pred EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCeEEEEEE
Confidence 6999999999999998522 121 000 0123444444445567 899999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-------SEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-------T~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
|| |..+- ... +.....++|++|||+++.... ..+.+..+..+. ..| ..++||+.|
T Consensus 128 tP---Gh~~f-------~~~----~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~---vp~iivviN 189 (467)
T 1r5b_A 128 AP---GHKGY-------VTN----MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVIN 189 (467)
T ss_dssp CC---C----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEE
T ss_pred CC---CcHHH-------HHH----HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC---CCEEEEEEE
Confidence 99 86431 111 223456899999999986432 123333333332 222 346899999
Q ss_pred cCCCCC
Q 044972 127 RGDELE 132 (307)
Q Consensus 127 ~~D~L~ 132 (307)
+.|...
T Consensus 190 K~Dl~~ 195 (467)
T 1r5b_A 190 KMDEPS 195 (467)
T ss_dssp CTTSTT
T ss_pred CccCCC
Confidence 999754
No 185
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.35 E-value=1.3e-07 Score=94.59 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=71.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|.+|+||||++|.|++....... ..+.|.+.......+ +|..++++||| |..+.... .....
T Consensus 10 vGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTP---Ghe~f~~~-----------~~~~~ 72 (501)
T 1zo1_I 10 MGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTP---GHAAFTSM-----------RARGA 72 (501)
T ss_dssp EESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCC---TTTCCTTS-----------BCSSS
T ss_pred ECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECC---CcHHHHHH-----------HHHHH
Confidence 699999999999999986533221 223454443344556 88999999999 86543211 11234
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
...|++|||+++......+....+..+.. .-..+||+.|+.|...
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~-----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA-----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH-----TTCCEEEEEECSSSST
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh-----cCceEEEEEEeccccc
Confidence 57899999999875555555555554443 2235899999999754
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.32 E-value=3.4e-07 Score=87.10 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=34.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
+|..++||||| |+.++. ..+ ...+|++|+|+++.... +...+.. .++. ...++|
T Consensus 165 ~~~~~iliDT~---Gi~~~~---~~l-----------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivV 218 (349)
T 2www_A 165 AGYDIILIETV---GVGQSE---FAV-----------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVA 218 (349)
T ss_dssp TTCSEEEEECC---CC--CH---HHH-----------HTTCSEEEEEECCC-----------------CC----SCSEEE
T ss_pred CCCCEEEEECC---Ccchhh---hhH-----------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEE
Confidence 67899999999 987532 111 24689999999875211 1111111 2221 246888
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
+|+.|...
T Consensus 219 lNK~Dl~~ 226 (349)
T 2www_A 219 VTKSDGDL 226 (349)
T ss_dssp ECCCSGGG
T ss_pred EeeecCCC
Confidence 99999764
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.32 E-value=1.3e-06 Score=95.05 Aligned_cols=131 Identities=16% Similarity=0.102 Sum_probs=77.6
Q ss_pred CCCCCCcHHHHHHHHHCCC------cccc----c----cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972 3 ACEYIKICTTTGNSILGRR------AFKS----K----VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE 68 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~------~F~s----~----~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~ 68 (307)
+|.+|+||||++|.|++.. .|.. . ....++|.......... +++.+++|||| |..+
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTP---GHed------ 371 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCP---GHAD------ 371 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECC---CHHH------
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECC---ChHH------
Confidence 6999999999999999741 1110 0 00122333322223344 67899999999 8532
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972 69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK 148 (307)
Q Consensus 69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~ 148 (307)
... -+.....++|++|||+++......+.+..+..+.. . -..++||+.|+.|.... ...-+.+. .
T Consensus 372 -F~~----~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-l---gIP~IIVVINKiDLv~d--~e~le~i~----e 436 (1289)
T 3avx_A 372 -YVK----NMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-V---GVPYIIVFLNKCDMVDD--EELLELVE----M 436 (1289)
T ss_dssp -HHH----HHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-H---TCSCEEEEEECCTTCCC--HHHHHHHH----H
T ss_pred -HHH----HHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-c---CCCeEEEEEeecccccc--hhhHHHHH----H
Confidence 222 23345678999999999975566666665554443 2 24568899999998753 22212221 2
Q ss_pred hHHHHHHhcC
Q 044972 149 PLKEILQLCD 158 (307)
Q Consensus 149 ~Lk~Li~~Cg 158 (307)
.++++++..|
T Consensus 437 Ei~elLk~~G 446 (1289)
T 3avx_A 437 EVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 4667777665
No 188
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=4.1e-07 Score=88.38 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=55.8
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~ 64 (307)
.+|+||||||||+|.|+|..+..+.. ...+|.....+...+ .| ..+.++||| |+....
T Consensus 25 iVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~p---Gl~~~~ 99 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIA---GLTKGA 99 (392)
T ss_dssp EEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTG---GGCCCC
T ss_pred EECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecc---ccccCC
Confidence 37999999999999999987533322 223455666677777 55 468999999 987543
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
...+.+...+.. ...+.|++++|+++.
T Consensus 100 s~~e~L~~~fl~----~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 100 STGVGLGNAFLS----HVRAVDAIYQVVRAF 126 (392)
T ss_dssp CSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred cHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 222212112211 224689999999874
No 189
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.31 E-value=6.6e-07 Score=89.27 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE--------EEe---CCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT--------MLK---DGQVVNVIDTPAIARLFDSSADFEFVS 71 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~--------~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~ 71 (307)
+|.+||||||++|.++|.+ |..... .|......+. .+. .+..+.|+||| |..........
T Consensus 47 vG~~~vGKSSLl~~l~~~~-~~~~~~---~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~---G~e~~~~~~~~-- 117 (535)
T 3dpu_A 47 IGDGMAGKTSLLKQLIGET-FDPKES---QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG---GQEIMHASHQF-- 117 (535)
T ss_dssp ESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCC---SCCTTTTTCHH--
T ss_pred ECCCCCCHHHHHHHHhcCC-CCCCCC---CccceEEEEeccccccceeecCCCceEEEEEEECC---cHHHHHHHHHH--
Confidence 7999999999999999976 332211 1211111111 110 25799999999 84332211111
Q ss_pred HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972 72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK 151 (307)
Q Consensus 72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk 151 (307)
...+++++|+|+++. .+ +.....+..+....+ -..+|||.|+.|.......+. ..++
T Consensus 118 ---------~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~---------~~~~ 174 (535)
T 3dpu_A 118 ---------FMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQ---------KKIN 174 (535)
T ss_dssp ---------HHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCH---------HHHH
T ss_pred ---------HccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCH---------HHHH
Confidence 112589999999986 44 333445555555432 367999999999765421111 2344
Q ss_pred HHHHhcCCeEEEEcCCC
Q 044972 152 EILQLCDNRRVLFDNKT 168 (307)
Q Consensus 152 ~Li~~Cg~R~~~fnNk~ 168 (307)
.+....+..|+..+-++
T Consensus 175 ~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 175 ERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHCGGGTTCEEECCC--
T ss_pred HHHHhcCCceEEEecCc
Confidence 55555565665555443
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.31 E-value=4.6e-06 Score=86.46 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccc----cC-----------CCCCCceeEEEEEEEeCC-------eEEEEEeCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSK----VG-----------SSEDTKTCEMQRTMLKDG-------QVVNVIDTPAIAR 59 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~----~s-----------~~svT~~c~~~~~~~~~G-------r~v~VIDTP~~~G 59 (307)
+|.+|+||||+.|.|+... .|... .. ..+.|.........| ++ ..++||||| |
T Consensus 16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liDTP---G 91 (704)
T 2rdo_7 16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIIDTP---G 91 (704)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEeCC---C
Confidence 6999999999999998642 12110 00 112343333345566 66 899999999 9
Q ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..|- ..++.+++ ...|++|+|+++....+.+....+..+.. .-...+|++|+.|....
T Consensus 92 ~~df-------~~~~~~~l----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 92 HVDF-------TIEVERSM----RVLDGAVMVYCAVGGVQPQSETVWRQANK-----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ccch-------HHHHHHHH----HHCCEEEEEEeCCCCCcHHHHHHHHHHHH-----cCCCEEEEEeCCCcccc
Confidence 7652 22333333 35799999999875666555555544432 23468889999997653
No 191
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3.5e-07 Score=83.84 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=40.3
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHH
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVS 71 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~ 71 (307)
.+|.|||||||++|+|+|.....++. ..++|+..+.. . -+..+.|+||| |+.++.. .+..+.
T Consensus 104 ~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~--~--~~~~~~l~Dtp---G~~~~~~~~~~~~~ 166 (262)
T 3cnl_A 104 IVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWF--S--LENGVKILDTP---GILYKNIFSEDLAA 166 (262)
T ss_dssp EEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSC---EECCCCCCSHHHHH
T ss_pred EeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEE--E--eCCCEEEEECC---CcccCcCCCChhhc
Confidence 36999999999999999988655432 23456555421 2 35589999999 9998876 655544
No 192
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.27 E-value=4.3e-07 Score=88.47 Aligned_cols=84 Identities=11% Similarity=-0.049 Sum_probs=43.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~ 64 (307)
.+|.|||||||++|.|+|.++ .+. ....+|.....+...+ .| ..+.++||| |+....
T Consensus 27 IVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~v-~~~r~~~l~~~~~p~~~~~~~i~lvDtp---Gl~~~a 100 (396)
T 2ohf_A 27 IVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVPV-PDERFDFLCQYHKPASKIPAFLNVVDIA---GLVKGA 100 (396)
T ss_dssp EECCSSSSHHHHHHHHHC---------------CCSEEEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECC---C-----
T ss_pred EECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEEE-CCccceeeccccCcccccccccEEEECC---Cccccc
Confidence 379999999999999999875 221 1223454555555555 43 359999999 987532
Q ss_pred cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
...+.+... +.....+.|++|+|+++.
T Consensus 101 s~~~glg~~----~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 101 HNGQGLGNA----FLSHISACDGIFHLTRAF 127 (396)
T ss_dssp ------CCH----HHHHHHTSSSEEEEEEC-
T ss_pred chhhHHHHH----HHHHHHhcCeEEEEEecC
Confidence 211112111 122235789999999874
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.24 E-value=4.4e-06 Score=71.34 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|++||||||++|.|+|.. |... ....++.........+ +|..+. ++||| |......-. ..
T Consensus 35 vG~~g~GKSTLl~~l~~~~-~~~~-~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~---g~~~~~~~~-----------~~ 97 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNE-FNLE-SKSTIGVEFATRSIQV-DGKTIKAQIWDTA---GLERYRAIT-----------SA 97 (191)
T ss_dssp EECTTSSHHHHHHHHHHSC-CCCS-CCCCCSEEEEEEEEEE-TTEEEEEEEEEEC---SCCSSSCCC-----------HH
T ss_pred ECcCCCCHHHHHHHHhcCC-CCCC-CCCccceEEEEEEEEE-CCEEEEEEEEECC---CCcchhhhh-----------HH
Confidence 6999999999999999975 3221 1223333444556667 887654 59999 875322110 11
Q ss_pred cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
...+.+++|+|+++....+-+.. ..+..+... ......++++.++.|..
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGG
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccc
Confidence 12467899999987622221111 112222221 12345788999998854
No 194
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.23 E-value=1.9e-06 Score=87.85 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=69.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+|+||||+.|.|+|...... .+.+.|.+.......+. ....+++|||| |..+...
T Consensus 11 vGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTP---Ghe~F~~ 85 (594)
T 1g7s_A 11 LGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTP---GHEAFTT 85 (594)
T ss_dssp ECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCC---TTSCCTT
T ss_pred ECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECC---CcHHHHH
Confidence 69999999999999998643221 11233333211122220 11259999999 8755321
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
. ........|++|||+++...+..+....+..+.. .-..+||++|+.|...
T Consensus 86 ~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 86 L-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp S-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred H-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence 1 1123456899999999986787777777776654 2346899999999864
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.22 E-value=6.4e-07 Score=86.26 Aligned_cols=85 Identities=13% Similarity=-0.022 Sum_probs=50.6
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--------------------CCeEEEEEeCCCCCCCC
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--------------------DGQVVNVIDTPAIARLF 61 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--------------------~Gr~v~VIDTP~~~Gl~ 61 (307)
.+|.|||||||++|.|+|..+..+..+ ..|.....+...++ .+..+.++||| |+.
T Consensus 6 IVG~pnvGKSTL~n~L~~~~~~v~~~p--~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp---Gl~ 80 (368)
T 2dby_A 6 IVGLPNVGKSTLFNALTRANALAANYP--FATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA---GLV 80 (368)
T ss_dssp EECCSSSSHHHHHHHHHHHHTTCSSCC--GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC---SCC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCC--CceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECC---Ccc
Confidence 379999999999999998753222211 12333333333331 24579999999 987
Q ss_pred CCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 62 DSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 62 Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
......+.+...... .....|++|+|+++.
T Consensus 81 ~~a~~~~~lg~~fl~----~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFLA----HIREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHHH----HHHTCSEEEEEEECC
T ss_pred ccccccchHHHHHHH----HHHhCCEEEEEEECC
Confidence 542111112122111 124689999999975
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.21 E-value=3.4e-06 Score=82.47 Aligned_cols=119 Identities=8% Similarity=0.009 Sum_probs=68.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls 81 (307)
+|+|||||||++|.|.|......... ..|.........+ ++ ..++|.||| |+.+.......+.....+ .
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~~i~~~~--ftTl~p~~G~V~~-~~~~~~~l~Dtp---Gli~~a~~~~~L~~~fl~----~ 232 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHPKIAPYP--FTTLSPNLGVVEV-SEEERFTLADIP---GIIEGASEGKGLGLEFLR----H 232 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCCEECCCT--TCSSCCEEEEEEC-SSSCEEEEEECC---CCCCCGGGSCCSCHHHHH----H
T ss_pred ECCCCCcHHHHHHHHHcCCccccCcc--cceecceeeEEEe-cCcceEEEEecc---ccccchhhhhhhhHHHHH----H
Confidence 69999999999999999865433222 1233344555556 54 899999999 986531100000011111 1
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELE 132 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~ 132 (307)
....+++|+|+++. +-...+......-...+... ..+..|||+++.|...
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 24678999999985 21122222222222222322 3467888899888653
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.16 E-value=1.9e-06 Score=91.03 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC--------------CCCCCceeEEEEEEEe---------------CCeEEEEEe
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG--------------SSEDTKTCEMQRTMLK---------------DGQVVNVID 53 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s--------------~~svT~~c~~~~~~~~---------------~Gr~v~VID 53 (307)
+|.+|+||||+.|.|++.....+... ..+.|-........|. .+..+++||
T Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD 104 (842)
T 1n0u_A 25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID 104 (842)
T ss_dssp ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence 69999999999999997532211100 0112222222333441 167899999
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
|| |..|-. . +..+++ ...|++|||+++....+.+....+..+.. .-...||+.|+.|..
T Consensus 105 TP---G~~df~--~-----~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SP---GHVDFS--S-----EVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CC---CCCSSC--H-----HHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECHHHH
T ss_pred Cc---CchhhH--H-----HHHHHH----HhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCeEEEEECCCcc
Confidence 99 987632 1 223322 46899999999976777777655544332 234688999999965
No 198
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.14 E-value=4.4e-06 Score=85.31 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=65.5
Q ss_pred CCCCCCcHHHHHHHHHCCC-cccccc-------C-----CCCCCceeEEEEEEEe--CC--eEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSKV-------G-----SSEDTKTCEMQRTMLK--DG--QVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~~-------s-----~~svT~~c~~~~~~~~--~G--r~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+|+||||+.|.|++.. .+.... + ..+.|-........|. +| ..+++|||| |..|-
T Consensus 12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP---Gh~dF-- 86 (600)
T 2ywe_A 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP---GHVDF-- 86 (600)
T ss_dssp ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC---CSGGG--
T ss_pred ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC---CcHhH--
Confidence 6999999999999998632 111100 0 0122322222333441 23 588999999 98652
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++.+.+ ...|++|||+++....+.+....+..... .-...||++|+.|....
T Consensus 87 -----~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 87 -----SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp -----HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred -----HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcccc
Confidence 22444443 35799999999876677666555544432 23458999999997653
No 199
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.13 E-value=6.7e-06 Score=83.92 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCCCCCcHHHHHHHHHCCC-ccccc-----c--C-----CCCCCceeEEEEEEEe--C--CeEEEEEeCCCCCCCCCCCc
Q 044972 3 ACEYIKICTTTGNSILGRR-AFKSK-----V--G-----SSEDTKTCEMQRTMLK--D--GQVVNVIDTPAIARLFDSSA 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~-~F~s~-----~--s-----~~svT~~c~~~~~~~~--~--Gr~v~VIDTP~~~Gl~Dt~~ 65 (307)
+|.+|+||||+.|.|++.. .+... . + ..+.|-........|. + +..+++|||| |..|.
T Consensus 10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP---Gh~dF-- 84 (599)
T 3cb4_D 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP---GHVDF-- 84 (599)
T ss_dssp ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECC---CCGGG--
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC---CchHH--
Confidence 6999999999999999632 11110 0 0 1123333333344452 2 3689999999 97552
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..++.+.+. ..|++|||+++....+.+....+..... .-...||++|+.|....
T Consensus 85 -----~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 85 -----SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp -----HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred -----HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccc
Confidence 233444443 3689999999876666666555544432 23468999999997654
No 200
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.10 E-value=6.2e-06 Score=73.16 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=76.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM 80 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l 80 (307)
+|.+||||||++|.+++.. |.....+ .+..........+ ++. .+.++||| |-..-.. +. ..
T Consensus 19 vGd~~VGKTsLi~r~~~~~-f~~~~~~-Tig~d~~~k~~~~-~~~~v~l~iwDta---Gqe~~~~--------l~---~~ 81 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDS-FDNTYQA-TIGIDFLSKTMYL-EDRTIRLQLWDTA---GLERFRS--------LI---PS 81 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSC-CC-----------CEEEEEEC-SSCEEEEEEECCS---CTTTCGG--------GH---HH
T ss_pred ECcCCcCHHHHHHHHHhCC-CCCCcCC-ccceEEEEEEEEe-cceEEEEEEEECC---Cchhhhh--------HH---HH
Confidence 6999999999999999654 6543221 1112233334445 664 56799999 8643211 11 12
Q ss_pred cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972 81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN 159 (307)
Q Consensus 81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~ 159 (307)
...+.|++|||.++.++-+-+. ...+..+....+++ -.+|||-|+.|.......+ ....+.+.+..|-
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~---------~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVS---------IEEGERKAKELNV 150 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSC---------HHHHHHHHHHHTC
T ss_pred HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCccc---------HHHHhhHHHHhCC
Confidence 3468999999999874322221 22344455555554 3678888988854321011 2234566777776
Q ss_pred eEEEEcCC
Q 044972 160 RRVLFDNK 167 (307)
Q Consensus 160 R~~~fnNk 167 (307)
.|+-..-+
T Consensus 151 ~~~e~SAk 158 (216)
T 4dkx_A 151 MFIETSAK 158 (216)
T ss_dssp EEEEEBTT
T ss_pred eeEEEeCC
Confidence 66544433
No 201
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.09 E-value=1.9e-05 Score=81.23 Aligned_cols=109 Identities=21% Similarity=0.122 Sum_probs=72.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|++|+||||+.|.|+|........+ ...+|-..+.....+ .+..++++||| |..|.
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTp---G~~~f--- 87 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAP---GYGDF--- 87 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECC---CSGGG---
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCC---Cccch---
Confidence 69999999999999995321100000 013344455556667 88999999999 97542
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
..++...+. ..|++|||+++...+.......+..+... -...||+.++.|..
T Consensus 88 ----~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ----VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp ----HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred ----HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 123333333 46889999998667777777666666542 34677888888876
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.09 E-value=7.8e-06 Score=80.68 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.|..++||||| |..+.+ ..+..++..... .+.||.+|||+++.. ........ ..|.+ ....+.||
T Consensus 181 ~~~DvVIIDTa---Grl~~d---~~lm~el~~i~~--~~~pd~vlLVvDA~~--gq~a~~~a----~~f~~-~~~i~gVI 245 (443)
T 3dm5_A 181 KGVDIIIVDTA---GRHKED---KALIEEMKQISN--VIHPHEVILVIDGTI--GQQAYNQA----LAFKE-ATPIGSII 245 (443)
T ss_dssp TTCSEEEEECC---CCSSCC---HHHHHHHHHHHH--HHCCSEEEEEEEGGG--GGGHHHHH----HHHHH-SCTTEEEE
T ss_pred CCCCEEEEECC---Ccccch---HHHHHHHHHHHH--hhcCceEEEEEeCCC--chhHHHHH----HHHHh-hCCCeEEE
Confidence 45799999999 976533 455666655432 236899999999752 22223333 33433 34677899
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
+|+.|.-.
T Consensus 246 lTKlD~~~ 253 (443)
T 3dm5_A 246 VTKLDGSA 253 (443)
T ss_dssp EECCSSCS
T ss_pred EECCCCcc
Confidence 99998754
No 203
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.08 E-value=9.9e-06 Score=79.17 Aligned_cols=111 Identities=14% Similarity=0.013 Sum_probs=65.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC---CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS---SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG 79 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~---~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ 79 (307)
+|++||||||++|.|+|.....++... ..+|+.. .....+.-..++|+|+| |+........++ ...+.
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~--~v~q~~~~~~ltv~D~~---g~~~~~~~~~~~----L~~~~ 145 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLP---GIGSTNFPPDTY----LEKMK 145 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECC---CGGGSSCCHHHH----HHHTT
T ss_pred ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE--EeccccccCCeeehHhh---cccchHHHHHHH----HHHcC
Confidence 699999999999999996433222111 1122211 11111112368999999 886433222222 22222
Q ss_pred hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972 80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
+ .+.+.+++ ++.+ ++..++......+... ...+++|+|+.|.+
T Consensus 146 L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 146 F--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp G--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred C--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 2 23355554 7877 7888877777776652 46889999998764
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.02 E-value=1.3e-06 Score=82.60 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
+|..+++|||| |+.++. .. + ....|++|+|++.. ... +...+.. ..+ -...+||
T Consensus 147 ~~~~i~liDTp---G~~~~~---~~----~-------~~~aD~vl~Vvd~~-~~~--~~~~l~~--~~~----~~p~ivv 200 (341)
T 2p67_A 147 AGYDVVIVETV---GVGQSE---TE----V-------ARMVDCFISLQIAG-GGD--DLQGIKK--GLM----EVADLIV 200 (341)
T ss_dssp TTCSEEEEEEE---CCTTHH---HH----H-------HTTCSEEEEEECC---------CCCCH--HHH----HHCSEEE
T ss_pred cCCCEEEEeCC---CccchH---HH----H-------HHhCCEEEEEEeCC-ccH--HHHHHHH--hhh----cccCEEE
Confidence 68899999999 987631 11 1 15789999999875 221 1011110 111 1246899
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
+|+.|...
T Consensus 201 ~NK~Dl~~ 208 (341)
T 2p67_A 201 INKDDGDN 208 (341)
T ss_dssp ECCCCTTC
T ss_pred EECCCCCC
Confidence 99999764
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.01 E-value=2.3e-05 Score=69.66 Aligned_cols=77 Identities=12% Similarity=0.015 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEE
Q 044972 47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLf 125 (307)
..++||||| |..+... ...+...+.. .... +++++|++.....+..+.. .+....... ...-...+||+
T Consensus 109 ~d~iiiDtp---G~~~~~~-~~~l~~~~~~----~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~ 178 (262)
T 1yrb_A 109 NDYVLIDTP---GQMETFL-FHEFGVRLME----NLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPAL 178 (262)
T ss_dssp CSEEEEECC---SSHHHHH-HSHHHHHHHH----TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEE
T ss_pred CCEEEEeCC---Cccchhh-hhhhHHHHHH----HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEE
Confidence 489999999 9754210 0111222322 2234 8888888765234444322 111111111 11234678999
Q ss_pred ecCCCCCC
Q 044972 126 TRGDELED 133 (307)
Q Consensus 126 T~~D~L~~ 133 (307)
|+.|....
T Consensus 179 NK~D~~~~ 186 (262)
T 1yrb_A 179 NKVDLLSE 186 (262)
T ss_dssp CCGGGCCH
T ss_pred eccccccc
Confidence 99997654
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.00 E-value=4.7e-06 Score=79.03 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.|..++||||| |+..+ ... + ...+|++|+|++.+ .. ++.. .+. ..+ .-...+||
T Consensus 170 ~~~~~iiiDTp---Gi~~~---~~~----~-------~~~aD~vl~V~d~~-~~-~~~~-~l~--~~~----~~~p~ivV 223 (355)
T 3p32_A 170 AGFDVILIETV---GVGQS---EVA----V-------ANMVDTFVLLTLAR-TG-DQLQ-GIK--KGV----LELADIVV 223 (355)
T ss_dssp TTCCEEEEEEC---SCSSH---HHH----H-------HTTCSEEEEEEESS-TT-CTTT-TCC--TTS----GGGCSEEE
T ss_pred CCCCEEEEeCC---CCCcH---HHH----H-------HHhCCEEEEEECCC-CC-ccHH-HHH--HhH----hhcCCEEE
Confidence 57899999999 97642 111 1 26789999999875 21 1111 111 011 11367999
Q ss_pred EecCCCCCC
Q 044972 125 FTRGDELED 133 (307)
Q Consensus 125 fT~~D~L~~ 133 (307)
+|+.|....
T Consensus 224 lNK~Dl~~~ 232 (355)
T 3p32_A 224 VNKADGEHH 232 (355)
T ss_dssp EECCCGGGH
T ss_pred EECCCCcCh
Confidence 999997643
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.92 E-value=6.9e-06 Score=80.58 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=47.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC-CeEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF-DYMIV 123 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~-~~~IV 123 (307)
++..++||||| |.... +..+..++... ...-.||.+|||++..... .++..+ ..|.+. . ..+.|
T Consensus 179 ~~~D~vIIDT~---G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~-----~~~~~~-~~~~~~-~~~i~gv 243 (432)
T 2v3c_C 179 KKADVLIIDTA---GRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ-----QAGIQA-KAFKEA-VGEIGSI 243 (432)
T ss_dssp SSCSEEEEECC---CSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG-----GHHHHH-HHHHTT-SCSCEEE
T ss_pred hCCCEEEEcCC---CCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH-----HHHHHH-HHHhhc-ccCCeEE
Confidence 56799999999 98752 45556666432 2234799999999875221 233332 345443 3 55899
Q ss_pred EEecCCCCC
Q 044972 124 VFTRGDELE 132 (307)
Q Consensus 124 LfT~~D~L~ 132 (307)
|+|++|...
T Consensus 244 VlnK~D~~~ 252 (432)
T 2v3c_C 244 IVTKLDGSA 252 (432)
T ss_dssp EEECSSSCS
T ss_pred EEeCCCCcc
Confidence 999998753
No 208
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=5.3e-05 Score=75.00 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCCCCCCcHHHHHHHHH-------C----------CCccccccCCCCCCceeEEEE----EEEeCC--eEEEEEeCCCCC
Q 044972 2 CACEYIKICTTTGNSIL-------G----------RRAFKSKVGSSEDTKTCEMQR----TMLKDG--QVVNVIDTPAIA 58 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL-------G----------~~~F~s~~s~~svT~~c~~~~----~~~~~G--r~v~VIDTP~~~ 58 (307)
-+|++++|||++.|.|| | ...|..+.+..++|+..-... ...++| ..|+|+||+
T Consensus 72 v~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE--- 148 (457)
T 4ido_A 72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ--- 148 (457)
T ss_dssp EEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC---
T ss_pred EECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc---
Confidence 37999999999999886 2 357877666666665433221 111244 369999999
Q ss_pred CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972 59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES 111 (307)
Q Consensus 59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~ 111 (307)
|++|+..+...-..-..-.+.+| .++|+-+. + .+++.+.+-|..+.+
T Consensus 149 G~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~-~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 149 GTFDSQSTLRDSATVFALSTMIS----SIQVYNLS-Q-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE-S-SCCHHHHHHHHHHHH
T ss_pred CCCCcccCccccHHHHHHHHHHh----hheeeccc-c-cCCHHHHHHHHHHHH
Confidence 99998776432222222223333 36666554 3 788888877776654
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.84 E-value=6.2e-06 Score=78.03 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR 95 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~ 95 (307)
+|.++++|||| |+.++. ..+ ...+|++++|+..+
T Consensus 146 ~~~~~iliDT~---Gi~~~~---~~v-----------~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 146 AGFDVILVETV---GVGQSE---TAV-----------ADLTDFFLVLMLPG 179 (337)
T ss_dssp TTCCEEEEEEC---SSSSCH---HHH-----------HTTSSEEEEEECSC
T ss_pred CCCCEEEEECC---CCCcch---hhH-----------HhhCCEEEEEEcCC
Confidence 68899999999 998642 111 14689999998764
No 210
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.82 E-value=0.00015 Score=73.12 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=72.8
Q ss_pred CCCCCCcHHHHHHHHHCCCc-------ccccc-------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRA-------FKSKV-------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~-------F~s~~-------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|..++|||||.-.||-..- ...+. -..+.|-.....+..| +|..|++|||| |-.|
T Consensus 37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP---GHvD 112 (548)
T 3vqt_A 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP---GHQD 112 (548)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC---CGGG
T ss_pred EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC---CcHH
Confidence 58899999999999972110 00000 0012232333456689 99999999999 9877
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
-. .|+.+++.. .|..|+|+++......+-..+++...+ .--..|+++++.|....
T Consensus 113 F~-------~Ev~raL~~----~DgAvlVvda~~GV~~qT~~v~~~a~~-----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FS-------EDTYRVLTA----VDSALVVIDAAKGVEAQTRKLMDVCRM-----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CS-------HHHHHHHHS----CSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCCEEEEEECTTSCCC
T ss_pred HH-------HHHHHHHHh----cCceEEEeecCCCcccccHHHHHHHHH-----hCCceEEEEecccchhc
Confidence 43 345555543 578888998865777777777776665 24578889999997654
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.79 E-value=8.1e-05 Score=69.58 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred CeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV 123 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV 123 (307)
+..+.+|||+ |+.+..... .++. .+...+..+ ...|+.+|||++..++ .+-...+..+.+. ...++|
T Consensus 184 ~~d~~llDt~---G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~-----~~~t~i 252 (304)
T 1rj9_A 184 GYDLLFVDTA---GRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEA-----VGLTGV 252 (304)
T ss_dssp TCSEEEECCC---CCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHH-----HCCSEE
T ss_pred CCCEEEecCC---CCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHH-----cCCcEE
Confidence 4578899999 986543211 1222 233333322 3469988999986422 2233333444332 345899
Q ss_pred EEecCCCC
Q 044972 124 VFTRGDEL 131 (307)
Q Consensus 124 LfT~~D~L 131 (307)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 99998754
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=5e-05 Score=74.67 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=44.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |..... .+.....++....... .||.++||++... ..+.......+.+ ....+.|+
T Consensus 178 ~~~DvvIIDTa---Gr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~--gq~a~~~a~~f~~-----~~~~~gVI 244 (433)
T 3kl4_A 178 NKMDIIIVDTA---GRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASI--GQKAYDLASRFHQ-----ASPIGSVI 244 (433)
T ss_dssp TTCSEEEEEEC---CCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGGHHHHHHHHH-----HCSSEEEE
T ss_pred cCCCEEEEECC---CCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCcc--chHHHHHHHHHhc-----ccCCcEEE
Confidence 36789999999 975411 1233445555533332 4789999998752 2222333333333 24567899
Q ss_pred EecCCCC
Q 044972 125 FTRGDEL 131 (307)
Q Consensus 125 fT~~D~L 131 (307)
+|+.|.-
T Consensus 245 lTKlD~~ 251 (433)
T 3kl4_A 245 ITKMDGT 251 (433)
T ss_dssp EECGGGC
T ss_pred Eeccccc
Confidence 9999864
No 213
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.71 E-value=1e-05 Score=72.85 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCeEEEEEEeCCCC--CCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972 84 GIHAVLIVFSVRNR--FSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE 132 (307)
Q Consensus 84 Gpha~LLVl~~~~R--fT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~ 132 (307)
+.|++|||+++.++ .+-+.. ..+..+...+.. .-..+|||.|+.|...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccccc
Confidence 57999999999744 444332 223333333221 2357899999999654
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.55 E-value=0.00019 Score=66.79 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=45.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
++..++||||| |..... .++.+..++.+.... ..||.+|||++.. . . ..++..+. .|.+ ....+.||
T Consensus 179 ~~~D~ViIDTp---g~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~-~--g--~~~~~~~~-~~~~-~~~i~gvV 245 (297)
T 1j8m_F 179 EKMEIIIVDTA---GRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDAS-I--G--QKAYDLAS-KFNQ-ASKIGTII 245 (297)
T ss_dssp TTCSEEEEECC---CSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGG-G--G--GGHHHHHH-HHHH-TCTTEEEE
T ss_pred CCCCEEEEeCC---CCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCC-c--h--HHHHHHHH-HHHh-hCCCCEEE
Confidence 56689999999 876511 233455555432211 1588999999875 2 1 22333332 3444 25558889
Q ss_pred EecCCCCC
Q 044972 125 FTRGDELE 132 (307)
Q Consensus 125 fT~~D~L~ 132 (307)
+|+.|.-.
T Consensus 246 lnk~D~~~ 253 (297)
T 1j8m_F 246 ITKMDGTA 253 (297)
T ss_dssp EECGGGCT
T ss_pred EeCCCCCc
Confidence 99988643
No 215
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.37 E-value=0.0002 Score=70.13 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=65.3
Q ss_pred CCCCCCcHHHHHHHHH-------CCCccccccCCCCCCc-----------eeEE-----------------EEEEEeCCe
Q 044972 3 ACEYIKICTTTGNSIL-------GRRAFKSKVGSSEDTK-----------TCEM-----------------QRTMLKDGQ 47 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL-------G~~~F~s~~s~~svT~-----------~c~~-----------------~~~~~~~Gr 47 (307)
+|++||||||+...|. |+++............ .... ....+ .+.
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~-~~~ 184 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL-KFY 184 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH-TTC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh-CCC
Confidence 5999999999999997 8776433222111000 0000 00011 467
Q ss_pred EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
.++||||| |..+.. ..+..++...... ..||.++||+++. .- . .++..+ ..|.+. ...+-||+|+
T Consensus 185 D~VIIDTp---G~l~~~---~~l~~~L~~~~~~--~~p~~vllVvda~-~g--~--~~~~~~-~~f~~~-l~i~gvVlnK 249 (433)
T 2xxa_A 185 DVLLVDTA---GRLHVD---EAMMDEIKQVHAS--INPVETLFVVDAM-TG--Q--DAANTA-KAFNEA-LPLTGVVLTK 249 (433)
T ss_dssp SEEEEECC---CCCTTC---HHHHHHHHHHHHH--SCCSEEEEEEETT-BC--T--THHHHH-HHHHHH-SCCCCEEEEC
T ss_pred CEEEEECC---Cccccc---HHHHHHHHHHHHh--hcCcceeEEeecc-hh--H--HHHHHH-HHHhcc-CCCeEEEEec
Confidence 89999999 876532 3455555543322 2589999999875 21 1 233333 345443 4445678999
Q ss_pred CCCC
Q 044972 128 GDEL 131 (307)
Q Consensus 128 ~D~L 131 (307)
.|.-
T Consensus 250 ~D~~ 253 (433)
T 2xxa_A 250 VDGD 253 (433)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 8864
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.37 E-value=0.00036 Score=69.82 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh---c-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---A-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l---s-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
.|..+++|||+ |..... ..+..++.+.+.. . ...||-+|||++.. ........++.+.. ....
T Consensus 374 ~~~DvVLIDTa---Grl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDat--tGq~al~~ak~f~~-----~~~i 440 (503)
T 2yhs_A 374 RNIDVLIADTA---GRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS--TGQNAVSQAKLFHE-----AVGL 440 (503)
T ss_dssp TTCSEEEECCC---CSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG--GTHHHHHHHHHHHH-----HTCC
T ss_pred cCCCEEEEeCC---Cccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCc--ccHHHHHHHHHHHh-----hcCC
Confidence 45789999999 987542 3444454443322 2 23589999999864 11222333333433 2456
Q ss_pred EEEEEecCCC
Q 044972 121 MIVVFTRGDE 130 (307)
Q Consensus 121 ~IVLfT~~D~ 130 (307)
+.||+||-|.
T Consensus 441 tgvIlTKLD~ 450 (503)
T 2yhs_A 441 TGITLTKLDG 450 (503)
T ss_dssp SEEEEECGGG
T ss_pred CEEEEEcCCC
Confidence 7889999775
No 217
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.36 E-value=9.2e-05 Score=63.86 Aligned_cols=18 Identities=11% Similarity=-0.235 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|.+||||||+.|.+++.
T Consensus 36 ~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999999875
No 218
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=3.2e-05 Score=72.75 Aligned_cols=53 Identities=19% Similarity=0.029 Sum_probs=28.8
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS 63 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt 63 (307)
+|++||||||++|.|+|.....++.-+ ..+|+..+. ... . .-.|+||| |+...
T Consensus 179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtp---g~~~~ 237 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTP---GFSSL 237 (307)
T ss_dssp EESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSC---SCSSC
T ss_pred ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCC---Ccccc
Confidence 699999999999999997654433221 123332221 122 2 34899999 88653
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.32 E-value=0.00036 Score=65.36 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh---c-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---A-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l---s-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
.+..++||||| |... ....+..++.+.... . +..||.++||++.. |. ..++..+.. |-+ ...-
T Consensus 185 ~~~dvvIiDtp---g~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~-~~~-~~~i 251 (306)
T 1vma_A 185 RNKDVVIIDTA---GRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKI-FKE-AVNV 251 (306)
T ss_dssp TTCSEEEEEEC---CCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHH-HHH-HSCC
T ss_pred cCCCEEEEECC---Cchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHH-HHh-cCCC
Confidence 45689999999 8632 345555555543322 2 23599999999874 33 334444433 332 2566
Q ss_pred EEEEEecCCCC
Q 044972 121 MIVVFTRGDEL 131 (307)
Q Consensus 121 ~IVLfT~~D~L 131 (307)
+-||+|+.|.-
T Consensus 252 ~gvVlTk~D~~ 262 (306)
T 1vma_A 252 TGIILTKLDGT 262 (306)
T ss_dssp CEEEEECGGGC
T ss_pred CEEEEeCCCCc
Confidence 77888988753
No 220
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.31 E-value=0.0001 Score=75.44 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
+|..++|||||.-.||-..-..+.... .+.|-.....+..| +|..|++|||| |-.|-
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP---GH~DF--- 80 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTP---GHMDF--- 80 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECC---CSSST---
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECC---CcHHH---
Confidence 588999999999999722111110000 02232333344578 99999999999 98763
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
..|+.+++.. .|..|+|+++..-...+....++..... --..|+++++.|....
T Consensus 81 ----~~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ----LAEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp ----HHHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSC
T ss_pred ----HHHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccC
Confidence 2355555543 5888999988656666666666666553 2346788899987654
No 221
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.31 E-value=0.0011 Score=62.92 Aligned_cols=117 Identities=9% Similarity=-0.017 Sum_probs=62.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
+|..||||||+.+.+.+.- |.........|-..... .+...-.+.+.||| |--+-..+. + +.. ...
T Consensus 5 lGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~--~v~~~v~LqIWDTA---GQErf~~~~--l---~~~---~yy 70 (331)
T 3r7w_B 5 MGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLE--HFSTLIDLAVMELP---GQLNYFEPS--Y---DSE---RLF 70 (331)
T ss_dssp ECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCE--EECSSSCEEEEECC---SCSSSCCCS--H---HHH---HHH
T ss_pred ECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeE--EEccEEEEEEEECC---Cchhccchh--h---hhh---hhc
Confidence 5999999999999888653 22111111223222222 13123589999999 864432110 0 011 124
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.|.|++|||+++.++|...-.....++..+-...---.++||.++.|...+
T Consensus 71 r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 71 KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 689999999998766433222222222221111112356677777776544
No 222
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.30 E-value=0.00019 Score=66.76 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=44.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |+.... .....++.+. +....++.+++|++... . ...+..+...|. .....-||
T Consensus 181 ~~~dlvIiDT~---G~~~~~---~~~~~el~~~--l~~~~~~~~~lVl~at~--~---~~~~~~~~~~~~--~l~~~giV 245 (296)
T 2px0_A 181 SEYDHVFVDTA---GRNFKD---PQYIDELKET--IPFESSIQSFLVLSATA--K---YEDMKHIVKRFS--SVPVNQYI 245 (296)
T ss_dssp GGSSEEEEECC---CCCTTS---HHHHHHHHHH--SCCCTTEEEEEEEETTB--C---HHHHHHHTTTTS--SSCCCEEE
T ss_pred cCCCEEEEeCC---CCChhh---HHHHHHHHHH--HhhcCCCeEEEEEECCC--C---HHHHHHHHHHHh--cCCCCEEE
Confidence 45689999999 987532 3344444432 22235788889997651 1 223445556665 35566778
Q ss_pred EecCCCC
Q 044972 125 FTRGDEL 131 (307)
Q Consensus 125 fT~~D~L 131 (307)
+|+.|.-
T Consensus 246 ltk~D~~ 252 (296)
T 2px0_A 246 FTKIDET 252 (296)
T ss_dssp EECTTTC
T ss_pred EeCCCcc
Confidence 8998754
No 223
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.26 E-value=0.00053 Score=64.48 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH---HHhcCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC---IGMAKD-GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY 120 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc---v~ls~p-Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~ 120 (307)
.+..++||||| |.... .+.+..++... +....| .||.++||++.. +. ..++..++. |.+. ...
T Consensus 190 ~~yD~VIIDTp---g~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~---~~--~~~l~~~~~-~~~~-~~i 256 (320)
T 1zu4_A 190 QNYDLLLIDTA---GRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT---TG--QNGVIQAEE-FSKV-ADV 256 (320)
T ss_dssp TTCSEEEEECC---CCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG---GT--HHHHHHHHH-HTTT-SCC
T ss_pred cCCCEEEEcCC---Ccccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---Cc--HHHHHHHHH-Hhhc-CCC
Confidence 56789999999 87542 23344444332 222234 589999999875 22 345555554 5443 445
Q ss_pred EEEEEecCCC
Q 044972 121 MIVVFTRGDE 130 (307)
Q Consensus 121 ~IVLfT~~D~ 130 (307)
.=||+|+.|.
T Consensus 257 ~GvVltk~d~ 266 (320)
T 1zu4_A 257 SGIILTKMDS 266 (320)
T ss_dssp CEEEEECGGG
T ss_pred cEEEEeCCCC
Confidence 5578898775
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.21 E-value=0.00094 Score=63.06 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=40.0
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF 125 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf 125 (307)
+..+++|||| |........-.-...+.+.+ .||-.++|++.... ..++..++. |.+ ....++|++
T Consensus 211 ~~d~vliDta---G~~~~~~~l~~eL~~i~ral-----~~de~llvLDa~t~-----~~~~~~~~~-~~~-~~~it~iil 275 (328)
T 3e70_C 211 GIDVVLIDTA---GRSETNRNLMDEMKKIARVT-----KPNLVIFVGDALAG-----NAIVEQARQ-FNE-AVKIDGIIL 275 (328)
T ss_dssp TCSEEEEEEC---CSCCTTTCHHHHHHHHHHHH-----CCSEEEEEEEGGGT-----THHHHHHHH-HHH-HSCCCEEEE
T ss_pred cchhhHHhhc---cchhHHHHHHHHHHHHHHHh-----cCCCCEEEEecHHH-----HHHHHHHHH-HHH-hcCCCEEEE
Confidence 4678899999 98654332222122233322 27788888886422 233333332 221 346689999
Q ss_pred ecCCC
Q 044972 126 TRGDE 130 (307)
Q Consensus 126 T~~D~ 130 (307)
||.|.
T Consensus 276 TKlD~ 280 (328)
T 3e70_C 276 TKLDA 280 (328)
T ss_dssp ECGGG
T ss_pred eCcCC
Confidence 99886
No 225
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00025 Score=65.65 Aligned_cols=55 Identities=20% Similarity=0.033 Sum_probs=32.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS 64 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~ 64 (307)
+|++||||||++|.|+|.....++.-. ..+|+.... ..+ . ..-.|+||| |+....
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~-~-~~g~v~q~p---~~~~~~ 235 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF-D-FGGYVVDTP---GFANLE 235 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC-T-TSCEEESSC---SSTTCC
T ss_pred ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc-C-CCCEEEECc---CCCccC
Confidence 699999999999999997654433211 123332211 111 1 234799999 886543
No 226
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.04 E-value=0.0036 Score=64.66 Aligned_cols=112 Identities=22% Similarity=0.190 Sum_probs=70.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEe------CCeEEEEEeCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLK------DGQVVNVIDTPAIARL 60 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~------~Gr~v~VIDTP~~~Gl 60 (307)
+|..++|||||.-.||-..-..+..+ ..+.|-.....+..|. ++..|++|||| |-
T Consensus 19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP---GH 95 (709)
T 4fn5_A 19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP---GH 95 (709)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC---SC
T ss_pred EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC---CC
Confidence 58899999999988872211111000 0122222333344552 24789999999 98
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972 61 FDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 61 ~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~ 133 (307)
.|-. .|+.+++.. .|..|+|+++......+...+++..... --..|+++++-|....
T Consensus 96 vDF~-------~Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 96 VDFT-------IEVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp TTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC
T ss_pred cccH-------HHHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc
Confidence 7632 355666655 4678888887667888877777776653 4468889999997643
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.01 E-value=0.00045 Score=64.09 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=30.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|++||||||++|.|+ .....++.-.. .+|+.... ... . ..-.|+||| |+..
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~p---g~~~ 228 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTP---GFSK 228 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSC---CCSS
T ss_pred ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECc---CcCc
Confidence 6999999999999999 65443332111 12332211 112 1 234789999 8863
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.90 E-value=0.00024 Score=68.15 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|||||||+|.|+|...
T Consensus 221 vG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSS
T ss_pred ECCCCccHHHHHHHHhcccc
Confidence 69999999999999999765
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.70 E-value=0.0045 Score=60.60 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |.... +..+..++....... .||.+|||++.. . . ..++..+ ..|.+. ...+-||
T Consensus 179 ~~~DvVIIDTa---G~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~-t--g--q~av~~a-~~f~~~-l~i~GVI 243 (425)
T 2ffh_A 179 EARDLILVDTA---GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T--G--QEALSVA-RAFDEK-VGVTGLV 243 (425)
T ss_dssp TTCSEEEEECC---CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G--T--THHHHHH-HHHHHH-TCCCEEE
T ss_pred CCCCEEEEcCC---Ccccc---cHHHHHHHHHhhhcc--CCceEEEEEecc-c--h--HHHHHHH-HHHHhc-CCceEEE
Confidence 56689999999 87643 234555554433222 588889999875 2 2 2334433 335443 4557788
Q ss_pred EecCCC
Q 044972 125 FTRGDE 130 (307)
Q Consensus 125 fT~~D~ 130 (307)
+|+.|.
T Consensus 244 lTKlD~ 249 (425)
T 2ffh_A 244 LTKLDG 249 (425)
T ss_dssp EESGGG
T ss_pred EeCcCC
Confidence 998875
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0062 Score=56.62 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=51.6
Q ss_pred CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV 123 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV 123 (307)
+..+.++||. |+.+... ...++. ....++..+. ..|+-+|||++..+.+... ..+..+.+ ....++|
T Consensus 183 ~~d~~lldt~---gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDptsglD~~--~~~~~~~~-----~~g~t~i 251 (302)
T 3b9q_A 183 GYDVVLCDTS---GRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNE-----VVGITGL 251 (302)
T ss_dssp TCSEEEECCC---CCSSCCHHHHHHHH-HHHHHHHTTSTTCCSEEEEEEEGGGGGGGH--HHHHHHHH-----HTCCCEE
T ss_pred CCcchHHhcC---CCCcchhHHHHHHH-HHHHHHHHhhccCCCeeEEEEeCCCCcCHH--HHHHHHHH-----hcCCCEE
Confidence 4567899999 9865321 112222 2223333333 4688777777632222222 22233322 2346899
Q ss_pred EEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCC
Q 044972 124 VFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNK 167 (307)
Q Consensus 124 LfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk 167 (307)
++||-|.... ....-.++...+.+...+.+-
T Consensus 252 iiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 252 ILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp EEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred EEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence 9999664321 123445666667777766654
No 231
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0056 Score=58.54 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=50.8
Q ss_pred CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEE
Q 044972 46 GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMI 122 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~I 122 (307)
+..+.++||. |+.+... ...++. .+..++..+ ...|+-+|||++. .+..|. ..+..+.+ ....++
T Consensus 240 ~~d~~lldt~---Gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDp---ttglD~~~~~~~~~~-----~~g~t~ 307 (359)
T 2og2_A 240 GYDVVLCDTS---GRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDG---NTGLNMLPQAREFNE-----VVGITG 307 (359)
T ss_dssp TCSEEEEECC---CCSSCCHHHHHHHH-HHHHHHHHHSTTCCSEEEEEEEG---GGGGGGHHHHHHHHH-----HTCCCE
T ss_pred CCHHHHHHhc---CCChhhhhHHHHHH-HHHHHHHHHHhcCCCceEEEEcC---CCCCCHHHHHHHHHH-----hcCCeE
Confidence 4567899999 9875421 112222 222233322 3468877777763 233221 12222322 235689
Q ss_pred EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCC
Q 044972 123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNK 167 (307)
Q Consensus 123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk 167 (307)
|++||-|.... ....-.++...+-+...+.+-
T Consensus 308 iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 308 LILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp EEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred EEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence 99999664322 122345556666666666553
No 232
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.88 E-value=0.072 Score=48.20 Aligned_cols=19 Identities=21% Similarity=-0.331 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.00055 Score=60.32 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 3 ACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
+||+||||||+.|.|++... |.... ...|+.... +++ +|..+.+||++
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~~~~~~~v--s~TTR~p~~--gE~-~G~~y~fvs~~ 74 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNPEKFVYPV--PYTTRPPRK--SEE-DGKEYHFISTE 74 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEECCC--CEECSCCCT--TCC-TTSSCEECCHH
T ss_pred ECcCCCCHHHHHHHHHhhCCccEEeee--cccccCCcC--Cee-ccccceeccHH
Confidence 69999999999999998642 43222 122333222 346 88888888887
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.98 E-value=0.0067 Score=51.20 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|+|..
T Consensus 11 ~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999999853
No 235
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.92 E-value=0.075 Score=44.66 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEE
Q 044972 46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVL 124 (307)
...++||||| +..+ ... ..+ +. ..|.+|+|+..+ .++ .. ..+++.+..+-.........||
T Consensus 75 ~yD~viiD~~---~~~~-----~~~-~~~---l~----~ad~viiv~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~vv 136 (206)
T 4dzz_A 75 DYDFAIVDGA---GSLS-----VIT-SAA---VM----VSDLVIIPVTPS-PLD-FSAAGSVVTVLEAQAYSRKVEARFL 136 (206)
T ss_dssp TSSEEEEECC---SSSS-----HHH-HHH---HH----HCSEEEEEECSC-TTT-HHHHHHHHHHHTTSCGGGCCEEEEE
T ss_pred CCCEEEEECC---CCCC-----HHH-HHH---HH----HCCEEEEEecCC-HHH-HHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4689999999 6542 111 111 11 257888888877 666 44 3445555543211112234888
Q ss_pred EecCCC
Q 044972 125 FTRGDE 130 (307)
Q Consensus 125 fT~~D~ 130 (307)
+|+.+.
T Consensus 137 ~N~~~~ 142 (206)
T 4dzz_A 137 ITRKIE 142 (206)
T ss_dssp ECSBCT
T ss_pred EeccCC
Confidence 998873
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.90 E-value=0.0072 Score=52.05 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||++|.|+|.
T Consensus 10 vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.0094 Score=49.93 Aligned_cols=18 Identities=6% Similarity=-0.175 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999999986
No 238
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.75 E-value=0.0084 Score=50.72 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.71 E-value=0.0085 Score=51.63 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|.|.-
T Consensus 26 ~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999999853
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.50 E-value=2.9 Score=43.72 Aligned_cols=18 Identities=17% Similarity=-0.182 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||+|||++...|.+.
T Consensus 197 ~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 197 IGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999988764
No 241
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.49 E-value=0.01 Score=53.89 Aligned_cols=18 Identities=17% Similarity=-0.145 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|+|.
T Consensus 31 ~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp ECSTTCSHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 699999999999999985
No 242
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.47 E-value=0.22 Score=49.88 Aligned_cols=19 Identities=11% Similarity=-0.274 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 243
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.44 E-value=0.011 Score=50.52 Aligned_cols=19 Identities=26% Similarity=-0.095 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|.-
T Consensus 6 ~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999864
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.39 E-value=0.036 Score=49.05 Aligned_cols=43 Identities=12% Similarity=-0.060 Sum_probs=30.1
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|+.||||||+++.|+|--... .+...+ +|+--.|-..| .+|.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~-------------~G~i~~-~g~i~~v~q~~---~~~~ 82 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELEPS-------------EGKIKH-SGRISFCSQFS---WIMP 82 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-------------EEEEEE-CSCEEEECSSC---CCCS
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-------------ccEEEE-CCEEEEEecCC---cccC
Confidence 6999999999999999964211 234456 77655566667 5554
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.24 E-value=0.012 Score=49.77 Aligned_cols=19 Identities=5% Similarity=-0.206 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|.-
T Consensus 7 ~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999999864
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.22 E-value=0.015 Score=51.87 Aligned_cols=19 Identities=16% Similarity=-0.359 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 37 iG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.20 E-value=0.013 Score=51.29 Aligned_cols=19 Identities=11% Similarity=-0.286 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|..
T Consensus 29 vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999999853
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.20 E-value=0.058 Score=48.05 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 249
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.01 E-value=0.035 Score=61.26 Aligned_cols=19 Identities=5% Similarity=-0.463 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
||+|||||||+++.|+|--
T Consensus 1111 VG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCChHHHHHHHHhcCc
Confidence 7999999999999999853
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.97 E-value=0.013 Score=50.50 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 28 ~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp ECCTTSCTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999885
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.96 E-value=0.015 Score=55.41 Aligned_cols=18 Identities=17% Similarity=-0.141 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||||||||+++|+|.
T Consensus 129 ~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999999985
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.96 E-value=0.018 Score=48.25 Aligned_cols=17 Identities=6% Similarity=-0.277 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.+++
T Consensus 15 ~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ECCTTSCHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHcc
Confidence 69999999999996543
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.84 E-value=0.017 Score=51.11 Aligned_cols=19 Identities=5% Similarity=-0.518 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 36 iG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EECTTSCHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.82 E-value=0.018 Score=48.61 Aligned_cols=19 Identities=11% Similarity=-0.204 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|.-
T Consensus 12 ~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 6999999999999998764
No 255
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.78 E-value=0.15 Score=44.47 Aligned_cols=17 Identities=6% Similarity=-0.355 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 45 ~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998854
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.72 E-value=0.015 Score=49.65 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 12 ~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 12 AGGTASGKTTLAQALART 29 (211)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999885
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.72 E-value=0.021 Score=51.97 Aligned_cols=19 Identities=11% Similarity=-0.282 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 43 iG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.64 E-value=0.024 Score=50.78 Aligned_cols=19 Identities=11% Similarity=-0.331 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 30 iG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.63 E-value=0.019 Score=48.18 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 69999999999999986
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.58 E-value=0.023 Score=52.10 Aligned_cols=19 Identities=11% Similarity=-0.344 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 40 iGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 6999999999999999964
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.58 E-value=0.023 Score=51.24 Aligned_cols=19 Identities=21% Similarity=-0.198 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 39 iG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 262
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.57 E-value=0.019 Score=55.89 Aligned_cols=18 Identities=17% Similarity=-0.271 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||||||||+|+|+|.
T Consensus 173 ~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.57 E-value=0.02 Score=50.58 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+||+||||||+.+.|+|..
T Consensus 22 ~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 6999999999999999964
No 264
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.55 E-value=0.32 Score=48.75 Aligned_cols=19 Identities=16% Similarity=-0.401 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 373 vG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 6999999999999999964
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.54 E-value=0.021 Score=54.19 Aligned_cols=19 Identities=21% Similarity=-0.083 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|+|.-
T Consensus 181 vG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp EESSSSCHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 6999999999999999963
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.50 E-value=0.024 Score=50.91 Aligned_cols=19 Identities=11% Similarity=-0.319 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.49 E-value=0.025 Score=51.30 Aligned_cols=19 Identities=11% Similarity=-0.424 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 38 iG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.47 E-value=0.022 Score=46.86 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++||||||+++.|.+.
T Consensus 10 ~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999998664
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.46 E-value=0.027 Score=50.60 Aligned_cols=18 Identities=17% Similarity=-0.008 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+.||||||+++.|.|-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999996
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.39 E-value=0.023 Score=49.01 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+||+||||||+++.|++.-
T Consensus 14 ~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp ECCTTSCHHHHHHHHHHST
T ss_pred ECcCCCCHHHHHHHHHhhC
Confidence 6999999999999999864
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.36 E-value=0.027 Score=49.71 Aligned_cols=19 Identities=16% Similarity=-0.351 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 41 iG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.30 E-value=0.027 Score=50.97 Aligned_cols=19 Identities=5% Similarity=-0.272 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 6999999999999999963
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.30 E-value=0.032 Score=49.21 Aligned_cols=21 Identities=14% Similarity=-0.135 Sum_probs=18.4
Q ss_pred CCCCCCcHHHHHHHHH---CCCcc
Q 044972 3 ACEYIKICTTTGNSIL---GRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~~~F 23 (307)
+|++||||||+++.|. |-..+
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5999999999999999 87544
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.30 E-value=0.027 Score=50.22 Aligned_cols=19 Identities=26% Similarity=-0.104 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 275
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.29 E-value=0.15 Score=45.28 Aligned_cols=17 Identities=6% Similarity=-0.318 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|.+
T Consensus 57 ~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp ESSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999999854
No 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.27 E-value=0.03 Score=50.85 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+.||||||+++.|.|-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999996
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.25 E-value=0.029 Score=50.66 Aligned_cols=19 Identities=11% Similarity=-0.211 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 32 iG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.25 E-value=0.023 Score=54.19 Aligned_cols=18 Identities=17% Similarity=-0.145 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||||||||++.|+|.
T Consensus 142 vG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999984
No 279
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.23 E-value=0.054 Score=49.50 Aligned_cols=17 Identities=0% Similarity=-0.361 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++.+|..
T Consensus 42 ~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 42 WGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.22 E-value=0.03 Score=45.21 Aligned_cols=15 Identities=0% Similarity=-0.374 Sum_probs=14.2
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
+|+|||||||+++.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 699999999999988
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.18 E-value=0.036 Score=49.47 Aligned_cols=19 Identities=11% Similarity=-0.415 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|--
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 282
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.16 E-value=0.37 Score=44.23 Aligned_cols=18 Identities=11% Similarity=-0.320 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++|+|||++++.|.+.
T Consensus 50 ~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999764
No 283
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.15 E-value=0.16 Score=56.10 Aligned_cols=19 Identities=11% Similarity=-0.317 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|.-
T Consensus 450 vG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSS
T ss_pred EecCCCcHHHHHHHhcccc
Confidence 7999999999999999964
No 284
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.14 E-value=0.023 Score=56.68 Aligned_cols=18 Identities=33% Similarity=0.001 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||||||||+|+|+|.
T Consensus 266 ~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EESTTSSHHHHHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999985
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.14 E-value=0.021 Score=48.80 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|+|.
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999883
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.08 E-value=0.031 Score=50.98 Aligned_cols=19 Identities=5% Similarity=-0.274 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999974
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.07 E-value=0.031 Score=50.85 Aligned_cols=19 Identities=5% Similarity=-0.443 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 56 iG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCCcHHHHHHHHHcCC
Confidence 6999999999999999964
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.05 E-value=0.034 Score=47.58 Aligned_cols=18 Identities=11% Similarity=-0.237 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|...
T Consensus 18 ~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 699999999999999754
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.04 E-value=0.031 Score=50.66 Aligned_cols=19 Identities=16% Similarity=-0.193 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 39 iG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999974
No 290
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.01 E-value=0.033 Score=46.45 Aligned_cols=18 Identities=11% Similarity=-0.298 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++|+|||++++.|.|.
T Consensus 44 ~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999875
No 291
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.01 E-value=0.13 Score=45.76 Aligned_cols=17 Identities=12% Similarity=-0.210 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 70 ~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAE 86 (272)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999998864
No 292
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.00 E-value=0.032 Score=50.34 Aligned_cols=20 Identities=15% Similarity=-0.132 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.||||||+++.|.|--.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999743
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.99 E-value=0.027 Score=52.70 Aligned_cols=18 Identities=11% Similarity=-0.215 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|+|-
T Consensus 132 vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 699999999999999974
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.97 E-value=0.022 Score=53.39 Aligned_cols=19 Identities=21% Similarity=-0.240 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|+|.-
T Consensus 177 ~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EESTTSCHHHHHHHGGGGS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999963
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.91 E-value=0.023 Score=49.56 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=11.4
Q ss_pred CCCCCCcHHHHHHHHH-CCC
Q 044972 3 ACEYIKICTTTGNSIL-GRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL-G~~ 21 (307)
+|++||||||+++.|. |.-
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECSCC----CHHHHHHC---
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 6999999999999999 863
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.83 E-value=0.031 Score=47.69 Aligned_cols=18 Identities=11% Similarity=-0.169 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 35 ~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998653
No 297
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.76 E-value=0.026 Score=52.69 Aligned_cols=19 Identities=5% Similarity=-0.356 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 86 vG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSS
T ss_pred ECCCCchHHHHHHHHHcCC
Confidence 6999999999999999964
No 298
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.72 E-value=0.5 Score=39.01 Aligned_cols=17 Identities=12% Similarity=-0.216 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|++|+|||++...+..
T Consensus 44 ~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 44 SGPPGTGKTATAIALAR 60 (226)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988864
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.69 E-value=0.042 Score=46.72 Aligned_cols=17 Identities=18% Similarity=-0.158 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999976
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.63 E-value=0.034 Score=45.97 Aligned_cols=17 Identities=0% Similarity=-0.271 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 14 ~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999998854
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.63 E-value=0.034 Score=48.14 Aligned_cols=16 Identities=13% Similarity=-0.180 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++||||||+++.|+
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 6999999999999988
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.57 E-value=0.042 Score=45.06 Aligned_cols=17 Identities=6% Similarity=-0.287 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+|||||||+++.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 59999999999999865
No 303
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.56 E-value=0.69 Score=42.19 Aligned_cols=17 Identities=12% Similarity=-0.242 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|++|+||||+++.|.|
T Consensus 42 ~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLE 58 (354)
T ss_dssp ECSTTSSHHHHHHTHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998877
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.54 E-value=0.041 Score=44.77 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 7 ~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLS 22 (173)
T ss_dssp ECSSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999884
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.48 E-value=0.037 Score=47.57 Aligned_cols=18 Identities=6% Similarity=-0.311 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 11 ~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999988653
No 306
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.41 E-value=0.35 Score=45.96 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=51.4
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC---------HHHH
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS---------EEEG 103 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT---------~ee~ 103 (307)
|.........+ ++..+.++||| |-.. ...-...+..+.|+||||+++. .+. ..-.
T Consensus 188 T~Gi~~~~~~~-~~~~l~i~Dt~---Gq~~-----------~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~ 251 (362)
T 1zcb_A 188 TKGIHEYDFEI-KNVPFKMVDVG---GQRS-----------ERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLT 251 (362)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEEC---C------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHH
T ss_pred ccceEEEEeee-CCeEEEEEecc---chhh-----------hhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHH
Confidence 33444455667 88999999999 8522 1111234678999999999997 542 2223
Q ss_pred HHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 104 AAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 104 ~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
..+.++..+..... --.+||++|+.|.+
T Consensus 252 es~~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 252 ESLNIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 44555555554432 24688889988865
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.39 E-value=0.026 Score=49.49 Aligned_cols=21 Identities=10% Similarity=-0.284 Sum_probs=18.4
Q ss_pred CCCCCCcHHHHHHHHHCCCccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFK 24 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~ 24 (307)
+|+.||||||+++.|.|- ...
T Consensus 28 iG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH-HHH
T ss_pred ECCCCCCHHHHHHHHhcC-CCc
Confidence 699999999999999997 433
No 308
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.37 E-value=0.05 Score=49.88 Aligned_cols=19 Identities=16% Similarity=-0.354 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|--
T Consensus 53 iG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999974
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.28 E-value=0.039 Score=51.41 Aligned_cols=18 Identities=17% Similarity=-0.080 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 96 ~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHhh
Confidence 699999999999999885
No 310
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.28 E-value=0.046 Score=49.70 Aligned_cols=19 Identities=21% Similarity=-0.207 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|-.
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 311
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.27 E-value=0.048 Score=44.95 Aligned_cols=17 Identities=0% Similarity=-0.310 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|.+||||||+++.+..
T Consensus 9 ~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998854
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.26 E-value=0.04 Score=46.98 Aligned_cols=18 Identities=6% Similarity=-0.333 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 31 ~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999775
No 313
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.23 E-value=1.1 Score=47.82 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=26.7
Q ss_pred CCCCeEEEEEEeCCCCCCHHHHHHH-HHHHHhhccccCCeEEEEEecCCCC
Q 044972 82 KDGIHAVLIVFSVRNRFSEEEGAAI-HSLESLFGKKVFDYMIVVFTRGDEL 131 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT~ee~~~l-~~i~~~FG~~~~~~~IVLfT~~D~L 131 (307)
...|.++||==| +...+..+...+ ..+.+.+-.. ...++|+.||-.++
T Consensus 739 a~~~sLlLLDEp-~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el 787 (934)
T 3thx_A 739 ATKDSLIIIDEL-GRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHEL 787 (934)
T ss_dssp CCTTCEEEEESC-SCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGG
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHH
Confidence 456666655444 325666666554 4444444321 34588889996544
No 314
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.45 Score=46.56 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=37.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls 81 (307)
.||||+|||+++.+|.+. -|.++..|+.| .|.+..... +...+.+ +..+
T Consensus 221 ~GPPGtGKTllAkAiA~e------------------------~~~~~~~v~~s---~l~sk~~Gese~~ir~~---F~~A 270 (437)
T 4b4t_L 221 YGPPGTGKTLLAKAVAAT------------------------IGANFIFSPAS---GIVDKYIGESARIIREM---FAYA 270 (437)
T ss_dssp ESCTTSSHHHHHHHHHHH------------------------HTCEEEEEEGG---GTCCSSSSHHHHHHHHH---HHHH
T ss_pred ECCCCCcHHHHHHHHHHH------------------------hCCCEEEEehh---hhccccchHHHHHHHHH---HHHH
Confidence 699999999999998653 23356677778 777655433 2223333 3332
Q ss_pred CCCCeEEEEEEeCC
Q 044972 82 KDGIHAVLIVFSVR 95 (307)
Q Consensus 82 ~pGpha~LLVl~~~ 95 (307)
....-+|||+-.++
T Consensus 271 ~~~~P~IifiDEiD 284 (437)
T 4b4t_L 271 KEHEPCIIFMDEVD 284 (437)
T ss_dssp HHSCSEEEEEECCC
T ss_pred HhcCCceeeeeccc
Confidence 22223566665554
No 315
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.10 E-value=0.042 Score=47.41 Aligned_cols=20 Identities=10% Similarity=-0.434 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|++|+||||+++.|.|.-.
T Consensus 7 ~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhhcc
Confidence 69999999999999998643
No 316
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.99 E-value=0.17 Score=45.32 Aligned_cols=17 Identities=6% Similarity=-0.253 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+||+|||+++..|.+
T Consensus 53 ~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAA 69 (311)
T ss_dssp ESCSSSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 59999999999998865
No 317
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.93 Score=44.79 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=52.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972 2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM 80 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l 80 (307)
..||||+|||+++.+|.+. -|.++..|+.+ .|.+..... +...+++-.....
T Consensus 248 LyGPPGTGKTlLAkAiA~e------------------------~~~~fi~vs~s---~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 248 LYGPPGTGKTLCARAVANR------------------------TDATFIRVIGS---ELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp ECSCTTSSHHHHHHHHHHH------------------------HTCEEEEEEGG---GGCCCSSSHHHHHHHHHHHHHHH
T ss_pred eeCCCCCcHHHHHHHHHhc------------------------cCCCeEEEEhH---HhhcccCCHHHHHHHHHHHHHHh
Confidence 3799999999999999653 23355667777 777655433 2333333333333
Q ss_pred cCCCCeEEEEEEeCC----CCCCH------H-HHHHHHHHHHhhccccCCeEEEEEe
Q 044972 81 AKDGIHAVLIVFSVR----NRFSE------E-EGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 81 s~pGpha~LLVl~~~----~RfT~------e-e~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
.. | +|||+-.++ .|... . .......|..+=|-.....++|+.|
T Consensus 301 ~a--P-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA 354 (467)
T 4b4t_H 301 KK--A-CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354 (467)
T ss_dssp TC--S-EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred cC--C-ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 22 3 455655543 13221 1 1223344555546566667776655
No 318
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.87 E-value=0.52 Score=43.00 Aligned_cols=18 Identities=17% Similarity=-0.145 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+|||++.+.|...
T Consensus 50 ~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CBCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999998753
No 319
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.85 E-value=0.1 Score=48.13 Aligned_cols=43 Identities=12% Similarity=-0.039 Sum_probs=29.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD 62 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D 62 (307)
+|+.||||||+++.|.|--.-. .+...+ +|+--.|-..| .+|+
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~p~-------------~G~I~~-~g~i~~v~Q~~---~l~~ 112 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELEPS-------------EGKIKH-SGRISFCSQNS---WIMP 112 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSCEE-------------EEEEEC-CSCEEEECSSC---CCCS
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-------------CcEEEE-CCEEEEEeCCC---ccCc
Confidence 5999999999999999964221 234455 67544555666 6654
No 320
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.81 E-value=0.37 Score=38.87 Aligned_cols=17 Identities=6% Similarity=-0.365 Sum_probs=14.9
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|-.
T Consensus 30 ~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp ESSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998843
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.70 E-value=0.05 Score=48.05 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 31 ~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999763
No 322
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.69 E-value=0.66 Score=44.07 Aligned_cols=17 Identities=12% Similarity=-0.208 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+||||++..|++
T Consensus 67 ~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIA 83 (356)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998875
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.68 E-value=0.057 Score=46.00 Aligned_cols=18 Identities=11% Similarity=-0.147 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 27 ~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 699999999999999886
No 324
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.81 Score=44.88 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=37.6
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls 81 (307)
.||||+|||+++.+|.+. -|.++..|+.| .|.+..... +...+.+-......
T Consensus 222 yGPPGTGKTlLAkAiA~e------------------------~~~~fi~v~~s---~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 222 YGAPGTGKTLLAKAVANQ------------------------TSATFLRIVGS---ELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp ESSTTTTHHHHHHHHHHH------------------------HTCEEEEEESG---GGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred ECCCCchHHHHHHHHHHH------------------------hCCCEEEEEHH---HhhhccCchHHHHHHHHHHHHHhc
Confidence 699999999999999653 23355667777 776655433 23334433333333
Q ss_pred CCCCeEEEEEEeCC
Q 044972 82 KDGIHAVLIVFSVR 95 (307)
Q Consensus 82 ~pGpha~LLVl~~~ 95 (307)
+ | +|||+-.++
T Consensus 275 a--P-~IIfiDEiD 285 (437)
T 4b4t_I 275 A--P-SIVFIDEID 285 (437)
T ss_dssp C--S-EEEEEEEES
T ss_pred C--C-cEEEEehhh
Confidence 3 2 566665543
No 325
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.63 E-value=0.46 Score=42.44 Aligned_cols=17 Identities=6% Similarity=-0.316 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|.+
T Consensus 60 ~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVAT 76 (297)
T ss_dssp ESSSSSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 59999999999999875
No 326
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.61 E-value=0.052 Score=46.12 Aligned_cols=17 Identities=12% Similarity=-0.220 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++|+||||+++.|+|
T Consensus 29 ~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999999984
No 327
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.60 E-value=0.065 Score=51.40 Aligned_cols=19 Identities=5% Similarity=-0.424 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|-.
T Consensus 60 iGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHhcCC
Confidence 6999999999999999965
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.58 E-value=0.021 Score=49.58 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=29.4
Q ss_pred CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972 3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP 55 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP 55 (307)
+||+||||||+.+.++... .|... .|.|+.. ...++. +|....+|+-.
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~~~~~~~s---vs~TTR~-pR~gE~-~G~dY~Fvs~~ 56 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEYPDSFGFS---VSSTTRT-PRAGEV-NGKDYNFVSVD 56 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEEEC---CCEECSC-CCTTCC-BTTTBEECCHH
T ss_pred ECCCCCCHHHHHHHHHHhCCCCeEEE---EEEeccC-CCCCCc-CCceeEeecHH
Confidence 6999999999999998653 35332 2333322 122345 67666665543
No 329
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.43 E-value=0.069 Score=51.47 Aligned_cols=19 Identities=16% Similarity=-0.244 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|||||||++.|.|-.
T Consensus 35 lGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHcCC
Confidence 6999999999999999975
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.41 E-value=0.065 Score=47.76 Aligned_cols=20 Identities=10% Similarity=-0.213 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHH---CCCc
Q 044972 3 ACEYIKICTTTGNSIL---GRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~~~ 22 (307)
+|++||||||+++.|. |-..
T Consensus 33 ~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 33 DGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCCc
Confidence 6999999999999998 7643
No 331
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.38 E-value=0.073 Score=44.64 Aligned_cols=17 Identities=6% Similarity=-0.265 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|++|+|||++...+..
T Consensus 51 ~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAK 67 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988864
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.34 E-value=0.07 Score=50.85 Aligned_cols=19 Identities=21% Similarity=-0.199 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 47 lGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999975
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.18 E-value=0.074 Score=43.96 Aligned_cols=16 Identities=13% Similarity=-0.195 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 9 ~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAM 24 (192)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999883
No 334
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.14 E-value=0.075 Score=50.68 Aligned_cols=19 Identities=21% Similarity=-0.303 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHCCC
Confidence 5999999999999999964
No 335
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.13 E-value=0.72 Score=41.75 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A 81 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s 81 (307)
.|+||+|||++...|...- |..+.-++.. .. ....+...+...... .
T Consensus 54 ~G~~G~GKT~la~~la~~l------------------------~~~~~~i~~~---~~-----~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 54 SPSPGTGKTTVAKALCHDV------------------------NADMMFVNGS---DC-----KIDFVRGPLTNFASAAS 101 (324)
T ss_dssp CSSTTSSHHHHHHHHHHHT------------------------TEEEEEEETT---TC-----CHHHHHTHHHHHHHBCC
T ss_pred eCcCCCCHHHHHHHHHHHh------------------------CCCEEEEccc---cc-----CHHHHHHHHHHHHhhcc
Confidence 5889999999999884321 1123334433 21 133444334433322 1
Q ss_pred CCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 82 KDGIHAVLIVFSVRNRFS-EEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 82 ~pGpha~LLVl~~~~RfT-~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
..|...+|++-.++ .++ .+....+..+.+.+. .+++|++|
T Consensus 102 ~~~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~----~~~~iI~~ 142 (324)
T 3u61_B 102 FDGRQKVIVIDEFD-RSGLAESQRHLRSFMEAYS----SNCSIIIT 142 (324)
T ss_dssp CSSCEEEEEEESCC-CGGGHHHHHHHHHHHHHHG----GGCEEEEE
T ss_pred cCCCCeEEEEECCc-ccCcHHHHHHHHHHHHhCC----CCcEEEEE
Confidence 22456677777787 888 666655555444332 34455554
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.13 E-value=0.077 Score=50.67 Aligned_cols=19 Identities=16% Similarity=-0.237 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999975
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.12 E-value=0.029 Score=47.78 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|+|.
T Consensus 8 vG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EESCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999985
No 338
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.09 E-value=0.073 Score=44.63 Aligned_cols=19 Identities=16% Similarity=-0.109 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|+.|+||||+.+.|.|--
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999999864
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.06 E-value=0.054 Score=45.85 Aligned_cols=17 Identities=6% Similarity=-0.271 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 69999999999999976
No 340
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.06 E-value=0.62 Score=42.95 Aligned_cols=17 Identities=0% Similarity=-0.351 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|..
T Consensus 51 ~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp ESSSSSCHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHH
Confidence 59999999999998865
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.04 E-value=0.064 Score=45.47 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 24 ~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998843
No 342
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.00 E-value=0.067 Score=51.13 Aligned_cols=19 Identities=16% Similarity=-0.246 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.||+||||||+++.|.|-.
T Consensus 36 lGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EESTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999965
No 343
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.98 E-value=0.08 Score=50.69 Aligned_cols=19 Identities=26% Similarity=-0.183 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCcHHHHHHHHHHcCC
Confidence 5999999999999999975
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.86 E-value=0.07 Score=45.57 Aligned_cols=18 Identities=17% Similarity=-0.208 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||++|.|++.
T Consensus 12 ~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHh
Confidence 699999999999999975
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.76 E-value=0.098 Score=43.36 Aligned_cols=16 Identities=6% Similarity=-0.305 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 10 ~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLA 25 (186)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999885
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.74 E-value=0.061 Score=44.67 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++|+||||++.+|.+
T Consensus 32 ~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 32 VGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999854
No 347
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.71 E-value=0.072 Score=45.15 Aligned_cols=17 Identities=18% Similarity=-0.250 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+||+||||+++.|++
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999987
No 348
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.76 Score=44.79 Aligned_cols=37 Identities=3% Similarity=-0.173 Sum_probs=27.5
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD 66 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~ 66 (307)
.||||+|||+++.+|.+. -|.++..|+.| .+.+....
T Consensus 212 ~GPPGtGKT~lakAiA~~------------------------~~~~~~~v~~~---~l~~~~~G 248 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANS------------------------TKAAFIRVNGS---EFVHKYLG 248 (428)
T ss_dssp ESCTTTTHHHHHHHHHHH------------------------HTCEEEEEEGG---GTCCSSCS
T ss_pred ECCCCCCHHHHHHHHHHH------------------------hCCCeEEEecc---hhhccccc
Confidence 699999999999998652 23456677778 77765543
No 349
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.96 Score=43.87 Aligned_cols=17 Identities=6% Similarity=-0.334 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.||||+|||.++.+|.+
T Consensus 188 ~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 188 YGPPGTGKTLLARAVAH 204 (405)
T ss_dssp ESCSSSSHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 69999999999999965
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.62 E-value=0.069 Score=50.72 Aligned_cols=19 Identities=16% Similarity=-0.305 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 32 lGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCccHHHHHHHHHcCC
Confidence 5999999999999999974
No 351
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.59 E-value=0.089 Score=43.68 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++||||||+++.|.
T Consensus 11 ~G~~GsGKst~a~~La 26 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLA 26 (185)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 352
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.56 E-value=0.069 Score=50.18 Aligned_cols=18 Identities=6% Similarity=-0.270 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 176 vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp ECCTTSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999985
No 353
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.55 E-value=0.091 Score=44.67 Aligned_cols=17 Identities=18% Similarity=-0.105 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||++..|.+
T Consensus 31 ~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999998864
No 354
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.48 E-value=0.064 Score=48.47 Aligned_cols=18 Identities=6% Similarity=-0.407 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||+||||+++.|.|.
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 699999999999988764
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.44 E-value=0.077 Score=44.09 Aligned_cols=16 Identities=13% Similarity=-0.093 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|.|||||||+++.|.
T Consensus 11 ~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 11 TGHPATGKTTLSQALA 26 (193)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999883
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.43 E-value=0.066 Score=49.32 Aligned_cols=18 Identities=17% Similarity=-0.080 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 86 ~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999884
No 357
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.36 E-value=0.11 Score=49.71 Aligned_cols=19 Identities=26% Similarity=-0.183 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
.|++||||||+++.|.|-.
T Consensus 43 lGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999975
No 358
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.34 E-value=0.083 Score=50.94 Aligned_cols=19 Identities=11% Similarity=-0.286 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|-.
T Consensus 53 lGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EESTTSSHHHHHHHHHTCS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 5999999999999999964
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.31 E-value=0.099 Score=43.67 Aligned_cols=17 Identities=12% Similarity=-0.255 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|.+||||||+++.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISK 22 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 69999999999998854
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.30 E-value=0.07 Score=45.63 Aligned_cols=17 Identities=18% Similarity=-0.167 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 28 ~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999976
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.26 E-value=0.051 Score=44.87 Aligned_cols=18 Identities=6% Similarity=-0.322 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++|+|||++++.|.|.
T Consensus 42 ~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp ESSSTTTTCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999874
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.00 E-value=0.11 Score=42.97 Aligned_cols=16 Identities=6% Similarity=-0.255 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||++..|.
T Consensus 10 ~G~~GsGKsTla~~La 25 (175)
T 1via_A 10 IGFMGSGKSTLARALA 25 (175)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 6999999999999884
No 363
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.98 E-value=0.065 Score=50.90 Aligned_cols=19 Identities=21% Similarity=-0.227 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|-.
T Consensus 37 lGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999975
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.92 E-value=0.093 Score=46.12 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+|||++++.|.|.
T Consensus 55 ~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999874
No 365
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.91 E-value=0.094 Score=45.14 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++|+||||++..|+|.
T Consensus 30 ~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 699999999999999983
No 366
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.89 E-value=0.11 Score=42.96 Aligned_cols=17 Identities=6% Similarity=-0.410 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|.+||||||+++.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998843
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.84 E-value=0.14 Score=41.87 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHH---HCCCcc
Q 044972 3 ACEYIKICTTTGNSI---LGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsI---LG~~~F 23 (307)
.|.+||||||++..| ||-..+
T Consensus 13 ~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEE
Confidence 599999999999987 555433
No 368
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.81 E-value=0.63 Score=43.90 Aligned_cols=16 Identities=6% Similarity=-0.323 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++||||||+++.|.
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999986
No 369
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.81 E-value=0.11 Score=43.58 Aligned_cols=17 Identities=12% Similarity=-0.185 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|.+||||||+++.|..
T Consensus 16 ~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998743
No 370
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.80 E-value=0.098 Score=44.69 Aligned_cols=18 Identities=6% Similarity=-0.232 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|.+||||||++|.+++.
T Consensus 44 vG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999999865
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.76 E-value=0.11 Score=46.35 Aligned_cols=17 Identities=12% Similarity=-0.257 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+|||||||+++.|.+
T Consensus 7 ~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 69999999999998854
No 372
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.74 E-value=0.12 Score=42.77 Aligned_cols=16 Identities=13% Similarity=-0.301 Sum_probs=14.2
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.|||||||+++.|.
T Consensus 9 ~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 9 LGGPGAGKGTQCARIV 24 (196)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999773
No 373
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.68 E-value=0.46 Score=42.49 Aligned_cols=17 Identities=18% Similarity=-0.091 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 73 ~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999986643
No 374
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.52 E-value=0.069 Score=47.68 Aligned_cols=19 Identities=11% Similarity=-0.218 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+||+||||||+++.|.|--
T Consensus 33 ~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999853
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.34 E-value=0.13 Score=41.98 Aligned_cols=15 Identities=20% Similarity=-0.031 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
.|.+||||||+++.|
T Consensus 8 ~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 8 VGARGCGMTTVGREL 22 (173)
T ss_dssp ESCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999987
No 376
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.29 E-value=0.14 Score=41.39 Aligned_cols=18 Identities=17% Similarity=-0.182 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||+|||++++.|...
T Consensus 49 ~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999988653
No 377
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.28 E-value=0.85 Score=42.88 Aligned_cols=16 Identities=6% Similarity=-0.288 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+||+|||+++..|.
T Consensus 154 ~GppGtGKT~la~aia 169 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVA 169 (389)
T ss_dssp ESSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999984
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.27 E-value=0.11 Score=48.81 Aligned_cols=18 Identities=17% Similarity=-0.091 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 98 ~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999988663
No 379
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.27 E-value=0.11 Score=47.20 Aligned_cols=18 Identities=11% Similarity=-0.234 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+|||++++.|.|.
T Consensus 50 ~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ESSTTSCHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 699999999999999874
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.22 E-value=0.13 Score=42.63 Aligned_cols=20 Identities=20% Similarity=-0.001 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHH---HCCCc
Q 044972 3 ACEYIKICTTTGNSI---LGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsI---LG~~~ 22 (307)
.|.|||||||++..| ||-..
T Consensus 8 ~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCCE
T ss_pred ECCCCCCHHHHHHHHHHHcCCCE
Confidence 699999999999887 45443
No 381
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.21 E-value=0.11 Score=52.20 Aligned_cols=19 Identities=11% Similarity=-0.272 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 375 vG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTSSHHHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhhcc
Confidence 6999999999999999964
No 382
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=89.19 E-value=0.62 Score=44.05 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=53.2
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC---------HHHH
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS---------EEEG 103 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT---------~ee~ 103 (307)
|.........+ ++..+.++||+ |-..- ......+..+.|+||||+++. .+. ..=.
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~---GQe~~-----------r~~w~~yf~~a~~iIfV~dls-~~d~~l~ed~~~nr~~ 243 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVG---GQRSE-----------RKKWIHCFEGVTAIIFCVALS-DYDLVLAEDEEMNRMH 243 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEEC---CSGGG-----------GGGGGGGCTTCSEEEEEEEGG-GGGCEETTEEEEEHHH
T ss_pred eeceEEEEEee-CCeeEEEEeCC---Cchhh-----------hHHHHHHHhcCCEEEEEEECc-cccccccccchhhhHH
Confidence 44444455667 88999999999 84321 111234678999999999987 432 2223
Q ss_pred HHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972 104 AAIHSLESLFGKKV--FDYMIVVFTRGDEL 131 (307)
Q Consensus 104 ~~l~~i~~~FG~~~--~~~~IVLfT~~D~L 131 (307)
..+.++..+..... --.+||++|+.|.+
T Consensus 244 e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 244 ESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 45566666655432 24688888888864
No 383
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.07 E-value=0.16 Score=42.62 Aligned_cols=16 Identities=0% Similarity=-0.342 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 10 ~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 10 EGIDGSGKSSQATLLK 25 (213)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999999884
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.06 E-value=0.12 Score=47.66 Aligned_cols=18 Identities=11% Similarity=-0.186 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.+.
T Consensus 37 ~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999998764
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.05 E-value=0.11 Score=48.11 Aligned_cols=18 Identities=22% Similarity=-0.180 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+||||+++.|.|.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 599999999999999874
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.04 E-value=0.16 Score=43.32 Aligned_cols=16 Identities=13% Similarity=-0.226 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||+++.|.
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQII 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 387
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.02 E-value=0.12 Score=43.04 Aligned_cols=16 Identities=13% Similarity=-0.232 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 15 ~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIV 30 (196)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999873
No 388
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.92 E-value=0.098 Score=52.75 Aligned_cols=19 Identities=16% Similarity=-0.235 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 387 vG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCc
Confidence 6999999999999999964
No 389
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.69 E-value=0.17 Score=41.76 Aligned_cols=16 Identities=13% Similarity=-0.205 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 6 ~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLY 21 (195)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999874
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.68 E-value=0.17 Score=42.02 Aligned_cols=16 Identities=6% Similarity=-0.402 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 6 ~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLA 21 (197)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999874
No 391
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.55 E-value=0.15 Score=51.07 Aligned_cols=19 Identities=16% Similarity=-0.191 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||+++.|.|.-
T Consensus 31 iGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 392
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.49 E-value=0.14 Score=46.84 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=15.8
Q ss_pred CCCCCCCcHHHHHHHHHC
Q 044972 2 CACEYIKICTTTGNSILG 19 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG 19 (307)
.+|+|||||||+++.|+.
T Consensus 38 l~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EECCTTSCTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 369999999999999963
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.49 E-value=0.13 Score=42.94 Aligned_cols=18 Identities=6% Similarity=-0.208 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|...
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 699999999999988754
No 394
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.46 E-value=0.11 Score=52.42 Aligned_cols=19 Identities=21% Similarity=-0.281 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||++|.|+|--
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999964
No 395
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.46 E-value=0.16 Score=42.03 Aligned_cols=16 Identities=19% Similarity=-0.105 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 17 ~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 17 TGTPGVGKTTLGKELA 32 (180)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 6999999999999875
No 396
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.42 E-value=0.085 Score=48.84 Aligned_cols=19 Identities=21% Similarity=-0.134 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|+.||||||++|.|+|..
T Consensus 10 ~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EESSSSSCHHHHHHHHHSC
T ss_pred EecCCCCHHHHHHHHHhhc
Confidence 5999999999999999764
No 397
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.39 E-value=0.11 Score=52.39 Aligned_cols=19 Identities=11% Similarity=-0.274 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 376 vG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999964
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.38 E-value=0.17 Score=50.61 Aligned_cols=20 Identities=10% Similarity=-0.139 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.||||||+++.|.|.-.
T Consensus 53 vG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999643
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.31 E-value=0.14 Score=45.80 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+|||++++.|.|.
T Consensus 79 ~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcChHHHHHHHHHHH
Confidence 699999999999999874
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.31 E-value=0.14 Score=42.25 Aligned_cols=16 Identities=13% Similarity=-0.267 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 12 ~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIV 27 (194)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 401
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.24 E-value=0.2 Score=42.03 Aligned_cols=17 Identities=18% Similarity=-0.177 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|.+||||||+++.|..
T Consensus 10 ~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIME 26 (204)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998854
No 402
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.23 E-value=0.2 Score=40.75 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
.|.+||||||+++.|
T Consensus 6 ~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLL 20 (168)
T ss_dssp ESCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999987
No 403
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.20 E-value=0.2 Score=41.49 Aligned_cols=17 Identities=12% Similarity=-0.287 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|.+||||||+++.|.+
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.17 E-value=0.19 Score=42.81 Aligned_cols=16 Identities=19% Similarity=-0.128 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||+++.|.
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIV 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999884
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.10 E-value=0.11 Score=42.72 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=10.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 11 ~G~~GsGKST~a~~La 26 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLH 26 (183)
T ss_dssp ECCC----CHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999874
No 406
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.07 E-value=0.28 Score=46.60 Aligned_cols=68 Identities=4% Similarity=-0.191 Sum_probs=38.3
Q ss_pred CCCCCCcHHHHHHHHHCCC--ccccccCCC-----C-CCceeEEEEEEEeCCeEEEEEeCCCCCCC-CCCCcCHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR--AFKSKVGSS-----E-DTKTCEMQRTMLKDGQVVNVIDTPAIARL-FDSSADFEFVSKE 73 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~-----s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl-~Dt~~~~~~i~~e 73 (307)
+|+||||||+++..|..+- .|.+..+.. + .|.... ..+. .|.+..+||.. .+ ++. .+.....+.
T Consensus 46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~-~gvphhlidi~---~~~~e~-~s~~~F~~~ 118 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDR-GGVPHHLLGEV---DPARGE-LTPADFRSL 118 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGG-TTCCEESSSCB---CGGGCC-CCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHH-cCCCEeecccc---CcccCc-cCHHHHHHH
Confidence 6999999999999997652 233322221 1 122111 1123 77788888888 66 443 344444443
Q ss_pred HHHH
Q 044972 74 IVKC 77 (307)
Q Consensus 74 I~kc 77 (307)
...+
T Consensus 119 a~~~ 122 (339)
T 3a8t_A 119 AGKA 122 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.01 E-value=0.18 Score=43.18 Aligned_cols=16 Identities=13% Similarity=-0.110 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|.+||||||+++.|-
T Consensus 10 ~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 10 TGGIGSGKSTVANAFA 25 (218)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999885
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.00 E-value=0.15 Score=42.48 Aligned_cols=16 Identities=6% Similarity=-0.276 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.|||||||+++.|.
T Consensus 18 ~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLV 33 (199)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 409
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.95 E-value=0.18 Score=41.98 Aligned_cols=18 Identities=11% Similarity=-0.261 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|.+||||||+++.|.+.
T Consensus 19 ~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 599999999999988653
No 410
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.93 E-value=2.4 Score=39.54 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+||+|||++.+.++..
T Consensus 51 ~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 51 TNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp ECCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999753
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.89 E-value=0.18 Score=44.97 Aligned_cols=16 Identities=6% Similarity=-0.315 Sum_probs=14.6
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|.|||||||+++.|.
T Consensus 10 ~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLA 25 (260)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 6999999999999884
No 412
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.79 E-value=0.19 Score=42.45 Aligned_cols=16 Identities=6% Similarity=-0.363 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.|||||||+++.|.
T Consensus 26 ~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLA 41 (201)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999873
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.76 E-value=0.14 Score=44.72 Aligned_cols=18 Identities=17% Similarity=-0.291 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|+.||||||+++.|.|.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999875
No 414
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.76 E-value=1.1 Score=43.81 Aligned_cols=18 Identities=6% Similarity=-0.330 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.||||+|||+++.+|.+.
T Consensus 221 yGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 221 YGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHH
Confidence 699999999999998653
No 415
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.74 E-value=0.2 Score=45.92 Aligned_cols=17 Identities=6% Similarity=-0.265 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|++|+|||++...+..
T Consensus 44 ~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 44 SGTRGVGKTSIARLLAK 60 (373)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999987753
No 416
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.56 E-value=0.17 Score=50.52 Aligned_cols=19 Identities=11% Similarity=-0.125 Sum_probs=17.0
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
++|.||||||+++|+|+..
T Consensus 172 IaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 172 VAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999999864
No 417
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.36 E-value=0.19 Score=42.33 Aligned_cols=16 Identities=6% Similarity=-0.195 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 16 ~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLV 31 (212)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5899999999999884
No 418
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.24 E-value=0.3 Score=46.23 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=45.7
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL 112 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~ 112 (307)
+.-|++...-+ ....+..||+| .+...+-+ .....+.+++|+|+++. .|.. ..+..+...
T Consensus 36 ~~~C~RC~~l~-hy~~~~~v~~~-----------~e~f~~~L----~~~~~~~~lil~VvD~~-d~~~---s~~~~l~~~ 95 (369)
T 3ec1_A 36 EVICQRCFRLK-HYNEVQDVPLD-----------DDDFLSML----HRIGESKALVVNIVDIF-DFNG---SFIPGLPRF 95 (369)
T ss_dssp -----------------------------------CHHHHHH----HHHHHHCCEEEEEEETT-CSGG---GCCSSHHHH
T ss_pred CEEchhHHHhh-ccccccCCcCC-----------HHHHHHHH----HHhhccCcEEEEEEECC-CCCC---chhhHHHHH
Confidence 45677766555 66666767766 12222211 12234688999999997 5542 223334555
Q ss_pred hccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC---eEEEEcCC
Q 044972 113 FGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN---RRVLFDNK 167 (307)
Q Consensus 113 FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~---R~~~fnNk 167 (307)
+| -+.+|||+|+.|.+.. ....+.+. ..++...+.+|. .++..+-+
T Consensus 96 l~---~~piilV~NK~DLl~~--~~~~~~~~----~~l~~~~~~~g~~~~~v~~iSA~ 144 (369)
T 3ec1_A 96 AA---DNPILLVGNKADLLPR--SVKYPKLL----RWMRRMAEELGLCPVDVCLVSAA 144 (369)
T ss_dssp CT---TSCEEEEEECGGGSCT--TCCHHHHH----HHHHHHHHTTTCCCSEEEECBTT
T ss_pred hC---CCCEEEEEEChhcCCC--ccCHHHHH----HHHHHHHHHcCCCcccEEEEECC
Confidence 55 4689999999998865 21112222 134555666675 34444443
No 419
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.02 E-value=0.15 Score=45.64 Aligned_cols=17 Identities=0% Similarity=-0.332 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++|+||||++..|+|
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999999986
No 420
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.00 E-value=0.26 Score=50.15 Aligned_cols=21 Identities=10% Similarity=-0.154 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHCCCcc
Q 044972 3 ACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F 23 (307)
+|+.|+||||++|.|.|.-..
T Consensus 109 vGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSSCC
T ss_pred ECCCCChHHHHHHHHhcCCCC
Confidence 699999999999999997543
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.96 E-value=0.18 Score=49.98 Aligned_cols=19 Identities=11% Similarity=-0.230 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|.|-.
T Consensus 35 iG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999853
No 422
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.93 E-value=1.5 Score=41.54 Aligned_cols=16 Identities=19% Similarity=-0.195 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|+||+|||+++-.|+
T Consensus 80 ~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 80 YGPESGGKTTLALAIV 95 (366)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHH
Confidence 6999999999997665
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.92 E-value=0.19 Score=42.45 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 15 ~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLV 30 (215)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999885
No 424
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.92 E-value=0.21 Score=50.71 Aligned_cols=20 Identities=15% Similarity=-0.122 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.|+||||+++.|.|.-.
T Consensus 123 iG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCChHHHHHHHHhCCCC
Confidence 69999999999999999653
No 425
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.88 E-value=0.26 Score=42.28 Aligned_cols=16 Identities=6% Similarity=-0.319 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.|||||||+++.|.
T Consensus 10 ~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999873
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.83 E-value=0.25 Score=40.61 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|++|+||||++.+|.
T Consensus 29 ~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999874
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.80 E-value=0.23 Score=41.64 Aligned_cols=16 Identities=0% Similarity=-0.147 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 8 ~G~~GsGKst~~~~la 23 (208)
T 3ake_A 8 DGPSASGKSSVARRVA 23 (208)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999883
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.78 E-value=0.23 Score=42.82 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHH---CCCcc
Q 044972 3 ACEYIKICTTTGNSIL---GRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL---G~~~F 23 (307)
+|.+||||||+++.+- |-.++
T Consensus 18 tG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEE
Confidence 5999999999999873 54443
No 429
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.74 E-value=0.17 Score=47.69 Aligned_cols=19 Identities=16% Similarity=-0.122 Sum_probs=16.9
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
++|+||+|||++.+.|++.
T Consensus 40 i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 40 ILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 4799999999999999864
No 430
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.70 E-value=0.28 Score=41.27 Aligned_cols=16 Identities=6% Similarity=-0.294 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 21 ~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLV 36 (203)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999885
No 431
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.36 E-value=0.26 Score=41.75 Aligned_cols=17 Identities=6% Similarity=-0.369 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 58 ~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACA 74 (242)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.36 E-value=0.2 Score=47.93 Aligned_cols=17 Identities=18% Similarity=-0.068 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++|+||||+++.|.|
T Consensus 175 ~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLE 191 (377)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 69999999999999987
No 433
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.36 E-value=0.24 Score=42.81 Aligned_cols=16 Identities=13% Similarity=-0.253 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.|||||||+++.|.
T Consensus 13 ~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999885
No 434
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.35 E-value=0.15 Score=45.28 Aligned_cols=17 Identities=12% Similarity=-0.333 Sum_probs=15.1
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+|||||||+++.|..
T Consensus 38 ~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp ESCGGGTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998854
No 435
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=86.22 E-value=1.5 Score=45.79 Aligned_cols=18 Identities=6% Similarity=-0.352 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.||.|+||||++++|.|-
T Consensus 582 ~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 582 TGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp ESCSSSSHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHhh
Confidence 599999999999999884
No 436
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.17 E-value=0.24 Score=42.53 Aligned_cols=16 Identities=13% Similarity=-0.244 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 11 ~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 11 SGAPASGKGTQCELIK 26 (222)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999884
No 437
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.13 E-value=0.18 Score=49.53 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 144 vGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 6999999999999999864
No 438
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.96 E-value=0.23 Score=44.80 Aligned_cols=17 Identities=18% Similarity=-0.093 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998854
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.88 E-value=0.31 Score=42.23 Aligned_cols=16 Identities=19% Similarity=-0.147 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||+++.|.
T Consensus 6 ~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVK 21 (223)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999873
No 440
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.87 E-value=0.23 Score=43.56 Aligned_cols=17 Identities=18% Similarity=-0.105 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|.+
T Consensus 51 ~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 69999999999999975
No 441
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.72 E-value=0.25 Score=42.42 Aligned_cols=16 Identities=13% Similarity=-0.215 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|+||+|||+++..|+
T Consensus 29 ~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999987775
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.71 E-value=0.32 Score=48.66 Aligned_cols=20 Identities=15% Similarity=-0.120 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.||||||+++.|.|-..
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999753
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.69 E-value=0.28 Score=44.03 Aligned_cols=17 Identities=6% Similarity=-0.287 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|.|||||||+++.|.-
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998864
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.58 E-value=0.27 Score=42.05 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||+++.|.
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.23 E-value=0.24 Score=40.18 Aligned_cols=17 Identities=6% Similarity=-0.378 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 49 ~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp ESCGGGCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999988754
No 446
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.10 E-value=2.8 Score=40.72 Aligned_cols=17 Identities=18% Similarity=-0.291 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 56 ~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999998864
No 447
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=85.08 E-value=2.3 Score=45.33 Aligned_cols=17 Identities=0% Similarity=-0.273 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.||.|+||||++++|.+
T Consensus 679 tGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 679 TGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp ESCCCHHHHHHHHHHHH
T ss_pred ECCCCCchHHHHHHHHH
Confidence 59999999999998854
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.00 E-value=0.14 Score=43.39 Aligned_cols=17 Identities=12% Similarity=-0.249 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|..
T Consensus 6 ~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999999864
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.97 E-value=0.31 Score=42.96 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 28 ~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIV 43 (252)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999873
No 450
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.83 E-value=1.3 Score=45.46 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+||+|||++...|..
T Consensus 213 ~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 213 VGESGVGKTAIAEGLAW 229 (758)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999988875
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.59 E-value=0.39 Score=41.04 Aligned_cols=18 Identities=6% Similarity=-0.234 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|.+||||||+++.|.+.
T Consensus 31 ~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988653
No 452
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.54 E-value=3 Score=38.00 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972 45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV 124 (307)
Q Consensus 45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL 124 (307)
.+..++||||| |.... +.....++....... .|+.++||++.. . . ..++..+. .|.+. ....-||
T Consensus 179 ~~~D~viiDtp---p~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~-~---~~~~~~~~-~~~~~-~~i~giv 243 (295)
T 1ls1_A 179 EARDLILVDTA---GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T-G---QEALSVAR-AFDEK-VGVTGLV 243 (295)
T ss_dssp HTCCEEEEECC---CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G-T---HHHHHHHH-HHHHH-TCCCEEE
T ss_pred CCCCEEEEeCC---CCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-C-c---HHHHHHHH-HHhhc-CCCCEEE
Confidence 45689999999 76543 234455555444333 477888999875 2 2 33444433 34433 4456678
Q ss_pred EecCCCC
Q 044972 125 FTRGDEL 131 (307)
Q Consensus 125 fT~~D~L 131 (307)
+|+.|.-
T Consensus 244 lnk~d~~ 250 (295)
T 1ls1_A 244 LTKLDGD 250 (295)
T ss_dssp EECGGGC
T ss_pred EECCCCC
Confidence 8987753
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.51 E-value=0.42 Score=47.68 Aligned_cols=21 Identities=14% Similarity=-0.250 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHCCCcc
Q 044972 3 ACEYIKICTTTGNSILGRRAF 23 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F 23 (307)
+|+.||||||+++.|.|-...
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCC
T ss_pred ECCCCCCHHHHHHHHhCCCCC
Confidence 699999999999999997543
No 454
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.42 E-value=0.91 Score=43.85 Aligned_cols=17 Identities=0% Similarity=-0.351 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|..
T Consensus 173 ~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 173 FGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.33 E-value=0.43 Score=40.08 Aligned_cols=17 Identities=12% Similarity=-0.234 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|..
T Consensus 60 ~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998875
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.17 E-value=1.4 Score=41.03 Aligned_cols=17 Identities=18% Similarity=-0.160 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||+++..|..
T Consensus 123 ~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp ESSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999853
No 457
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.00 E-value=0.36 Score=41.51 Aligned_cols=20 Identities=15% Similarity=-0.215 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHH---HCCCc
Q 044972 3 ACEYIKICTTTGNSI---LGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsI---LG~~~ 22 (307)
.|.|||||||+++.| +|-..
T Consensus 11 ~G~~GsGKsT~a~~La~~l~~~~ 33 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKEYGLAH 33 (217)
T ss_dssp EECTTSSHHHHHHHHHHHHCCEE
T ss_pred ECCCCCCHHHHHHHHHHHhCceE
Confidence 599999999999988 56443
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.95 E-value=0.43 Score=42.70 Aligned_cols=16 Identities=0% Similarity=-0.226 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|++||||||+++.|.
T Consensus 15 ~G~~GsGKsTla~~la 30 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999885
No 459
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=83.88 E-value=0.98 Score=42.71 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=34.9
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL 112 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~ 112 (307)
+.-|++...-+ ....+..+++| .+...+-+. ....+.|++|+|+++. .+ +......+.++
T Consensus 34 ~~~C~Rc~~l~-hy~~~~~v~~~-----------~e~f~~~l~----~i~~~~~~il~VvD~~-d~---~~~~~~~l~~~ 93 (368)
T 3h2y_A 34 QVICQRCFRLK-HYNEIQDVSLT-----------DDDFLRILN----GIGKSDALVVKIVDIF-DF---NGSWLPGLHRF 93 (368)
T ss_dssp ----------------------------------CHHHHHHHH----HHHHSCCEEEEEEETT-SH---HHHCCTTHHHH
T ss_pred CcEEhhhhhhh-ccCccccCCCC-----------HHHHHHHHH----HHhccCcEEEEEEECC-CC---cccHHHHHHHH
Confidence 45677665555 55555656655 233222222 2234788999999986 33 23334455666
Q ss_pred hccccCCeEEEEEecCCCCCC
Q 044972 113 FGKKVFDYMIVVFTRGDELED 133 (307)
Q Consensus 113 FG~~~~~~~IVLfT~~D~L~~ 133 (307)
++ -+.+|||+|+.|.+..
T Consensus 94 ~~---~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 94 VG---NNKVLLVGNKADLIPK 111 (368)
T ss_dssp SS---SSCEEEEEECGGGSCT
T ss_pred hC---CCcEEEEEEChhcCCc
Confidence 65 4679999999998765
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.80 E-value=0.44 Score=41.40 Aligned_cols=16 Identities=6% Similarity=-0.336 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|.+||||||+++.|.
T Consensus 22 ~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLA 37 (233)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999883
No 461
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.80 E-value=0.46 Score=41.90 Aligned_cols=16 Identities=6% Similarity=-0.363 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.|+|||||||++..|.
T Consensus 35 ~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLK 50 (243)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999884
No 462
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=83.77 E-value=2.4 Score=38.92 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=53.0
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.||+|+||+++...|... . . .|.. ....+..+|.. |- ..+.+++.. +...+...+
T Consensus 24 ~Gp~G~GKtt~a~~la~~--~--~--------~~~~------~~~d~~~l~~~---~~---~~~id~ir~-li~~~~~~p 78 (305)
T 2gno_A 24 NGEDLSYPREVSLELPEY--V--E--------KFPP------KASDVLEIDPE---GE---NIGIDDIRT-IKDFLNYSP 78 (305)
T ss_dssp ECSSSSHHHHHHHHHHHH--H--H--------TSCC------CTTTEEEECCS---SS---CBCHHHHHH-HHHHHTSCC
T ss_pred ECCCCCCHHHHHHHHHHh--C--c--------hhhc------cCCCEEEEcCC---cC---CCCHHHHHH-HHHHHhhcc
Confidence 699999999999887641 0 0 0100 12345666655 41 233444443 444443332
Q ss_pred -CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 83 -DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 83 -pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
.|.+-|+++-.++ +||..-.+++-.+.+ +--.+++++|+
T Consensus 79 ~~~~~kvviIdead-~lt~~a~naLLk~LE----ep~~~t~fIl~ 118 (305)
T 2gno_A 79 ELYTRKYVIVHDCE-RMTQQAANAFLKALE----EPPEYAVIVLN 118 (305)
T ss_dssp SSSSSEEEEETTGG-GBCHHHHHHTHHHHH----SCCTTEEEEEE
T ss_pred ccCCceEEEeccHH-HhCHHHHHHHHHHHh----CCCCCeEEEEE
Confidence 3566777777777 999877665444433 22356666655
No 463
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.68 E-value=0.28 Score=46.32 Aligned_cols=19 Identities=11% Similarity=-0.337 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|..
T Consensus 77 iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999964
No 464
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.66 E-value=2.1 Score=45.03 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK 82 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~ 82 (307)
.||||+|||++...|.+.- |.++..||.| .+.+..... ..+.+...+..+.
T Consensus 244 ~GPPGTGKT~LAraiA~el------------------------g~~~~~v~~~---~l~sk~~ge--se~~lr~lF~~A~ 294 (806)
T 3cf2_A 244 YGPPGTGKTLIARAVANET------------------------GAFFFLINGP---EIMSKLAGE--SESNLRKAFEEAE 294 (806)
T ss_dssp ECCTTSCHHHHHHHHHTTT------------------------TCEEEEEEHH---HHHSSCTTH--HHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh------------------------CCeEEEEEhH---HhhcccchH--HHHHHHHHHHHHH
Confidence 5999999999999987641 2345667777 555433222 2223333344444
Q ss_pred CCCeEEEEEEeCCC-------CCCHHHHHHHHHHHHhh-ccccCCeEEEEEe
Q 044972 83 DGIHAVLIVFSVRN-------RFSEEEGAAIHSLESLF-GKKVFDYMIVVFT 126 (307)
Q Consensus 83 pGpha~LLVl~~~~-------RfT~ee~~~l~~i~~~F-G~~~~~~~IVLfT 126 (307)
...-+|||+-.++. .-.+.++.++..+...+ |-....+++|+.|
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 33335666655541 11233556666555443 3333445655544
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.63 E-value=0.31 Score=53.62 Aligned_cols=19 Identities=11% Similarity=-0.344 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++||||||+++.|+|--
T Consensus 422 vG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999964
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.58 E-value=0.28 Score=46.14 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++|+||||+++.|+|.
T Consensus 137 ~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999875
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.36 E-value=0.5 Score=47.99 Aligned_cols=20 Identities=15% Similarity=-0.200 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHCCCc
Q 044972 3 ACEYIKICTTTGNSILGRRA 22 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~ 22 (307)
+|+.||||||+++.|.|--.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCCCHHHHHHHHhcCCC
Confidence 69999999999999999753
No 468
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.33 E-value=0.45 Score=40.55 Aligned_cols=19 Identities=11% Similarity=-0.260 Sum_probs=16.4
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|.+||||||+.+.|++.
T Consensus 9 i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 3699999999999999863
No 469
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.27 E-value=2.1 Score=42.13 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+||+|||++++.|.|.
T Consensus 55 ~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 55 VGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999873
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.14 E-value=0.35 Score=43.80 Aligned_cols=16 Identities=0% Similarity=-0.267 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
+|.+||||||+++.|-
T Consensus 81 ~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK 96 (281)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999885
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.14 E-value=0.32 Score=43.28 Aligned_cols=16 Identities=13% Similarity=-0.130 Sum_probs=13.5
Q ss_pred CCCCCCcHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL 18 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL 18 (307)
.||||+|||+++.+|.
T Consensus 64 ~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 64 CGPANTGKSYFGMSFI 79 (212)
T ss_dssp ESCGGGCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999998876664
No 472
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.13 E-value=4.2 Score=37.31 Aligned_cols=110 Identities=7% Similarity=0.008 Sum_probs=51.4
Q ss_pred CCCCCCcHHHHHHHHH----CCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSIL----GRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI 78 (307)
Q Consensus 3 ~~~tGsGKSStgNsIL----G~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv 78 (307)
.|++|+||+++...+. +... .... +.+.-..|..... . ....+.+++.. +- ....+.+++ +++.+.+
T Consensus 30 ~G~~G~GKt~~a~~la~~l~~~~~-~~~~-~c~~c~~c~~~~~-~-~~~d~~~~~~~---~~-~~~~~i~~i-r~l~~~~ 100 (334)
T 1a5t_A 30 QALPGMGDDALIYALSRYLLCQQP-QGHK-SCGHCRGCQLMQA-G-THPDYYTLAPE---KG-KNTLGVDAV-REVTEKL 100 (334)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCSSC-BTTB-CCSCSHHHHHHHH-T-CCTTEEEECCC---TT-CSSBCHHHH-HHHHHHT
T ss_pred ECCCCchHHHHHHHHHHHHhCCCC-CCCC-CCCCCHHHHHHhc-C-CCCCEEEEecc---cc-CCCCCHHHH-HHHHHHH
Confidence 5999999999987653 3221 1000 1111111221000 0 11235556543 11 112333444 3454444
Q ss_pred HhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972 79 GMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 79 ~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
...+ .|..-|+++-.++ .+|.+-..++ .+.+-+ --.+++++++
T Consensus 101 ~~~~~~~~~kvviIdead-~l~~~a~naL---Lk~lEe-p~~~~~~Il~ 144 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAA-LLTDAAANAL---LKTLEE-PPAETWFFLA 144 (334)
T ss_dssp TSCCTTSSCEEEEESCGG-GBCHHHHHHH---HHHHTS-CCTTEEEEEE
T ss_pred hhccccCCcEEEEECchh-hcCHHHHHHH---HHHhcC-CCCCeEEEEE
Confidence 3332 3566777777777 8987655543 343333 2345555554
No 473
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.91 E-value=0.43 Score=48.33 Aligned_cols=19 Identities=16% Similarity=-0.162 Sum_probs=17.0
Q ss_pred CCCCCCCcHHHHHHHHHCC
Q 044972 2 CACEYIKICTTTGNSILGR 20 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~ 20 (307)
.+|.||||||+++|+|+..
T Consensus 219 IaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 219 VAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998864
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.89 E-value=0.45 Score=40.98 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=14.1
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
+|++|+||||++.+|
T Consensus 29 ~G~NgsGKStil~ai 43 (203)
T 3qks_A 29 IGQNGSGKSSLLDAI 43 (203)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 699999999999988
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.85 E-value=0.53 Score=47.87 Aligned_cols=24 Identities=17% Similarity=-0.184 Sum_probs=19.9
Q ss_pred CCCCCCcHHHHHHHHHCCCccccc
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSK 26 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~ 26 (307)
+|+.||||||+++.|.|-....++
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCC
Confidence 699999999999999997644433
No 476
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.82 E-value=0.45 Score=45.11 Aligned_cols=17 Identities=6% Similarity=-0.244 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+|||||||++..|..
T Consensus 13 ~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAK 29 (340)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCcCcHHHHHHHHHH
Confidence 69999999999998864
No 477
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.43 E-value=0.33 Score=47.29 Aligned_cols=19 Identities=0% Similarity=-0.433 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHCCC
Q 044972 3 ACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~ 21 (307)
+|++|+||||+++.|.|..
T Consensus 163 vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999964
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.28 E-value=0.52 Score=41.42 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=15.9
Q ss_pred CCCCCCCcHHHHHHHHHC
Q 044972 2 CACEYIKICTTTGNSILG 19 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG 19 (307)
..|+||+|||+++..|.+
T Consensus 49 l~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 49 LVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CBCSSCSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 369999999999998865
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.19 E-value=0.41 Score=41.69 Aligned_cols=17 Identities=12% Similarity=-0.169 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|++||||||+++.|.+
T Consensus 22 ~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ECSSCSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998854
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.14 E-value=0.48 Score=44.57 Aligned_cols=18 Identities=6% Similarity=-0.217 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|+|||||||++..|...
T Consensus 11 ~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADA 28 (323)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999988643
No 481
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=81.75 E-value=1.1 Score=44.21 Aligned_cols=17 Identities=6% Similarity=-0.285 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 244 ~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVAN 260 (489)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 59999999999999843
No 482
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=81.70 E-value=3.5 Score=37.41 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEe
Q 044972 48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFT 126 (307)
Q Consensus 48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT 126 (307)
.++||||| ..... .+.. ....-.|.+|+|++.+ ..+..+. .+++.+... | .+..-||+|
T Consensus 203 D~VIIDtp---p~~~~--~da~----------~l~~~aD~vllVv~~~-~~~~~~~~~~~~~l~~~-g---~~~~GvVlN 262 (286)
T 3la6_A 203 DLVLIDTP---PILAV--TDAA----------IVGRHVGTTLMVARYA-VNTLKEVETSLSRFEQN-G---IPVKGVILN 262 (286)
T ss_dssp SEEEEECC---CTTTC--THHH----------HHTTTCSEEEEEEETT-TSBHHHHHHHHHHHHHT-T---CCCCEEEEE
T ss_pred CEEEEcCC---CCcch--HHHH----------HHHHHCCeEEEEEeCC-CCcHHHHHHHHHHHHhC-C---CCEEEEEEc
Confidence 58999999 55432 1111 1234578899999987 6665543 344555432 2 445667788
Q ss_pred cCCC
Q 044972 127 RGDE 130 (307)
Q Consensus 127 ~~D~ 130 (307)
+.+.
T Consensus 263 ~v~~ 266 (286)
T 3la6_A 263 SIFR 266 (286)
T ss_dssp EECC
T ss_pred Cccc
Confidence 8764
No 483
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=81.64 E-value=3.4 Score=39.78 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=51.5
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC---------CHHHH
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF---------SEEEG 103 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf---------T~ee~ 103 (307)
|.........+ ++..+.++||+ |--.- ......+..+.|+||||+++. .| ...=.
T Consensus 204 TiGi~~~~~~~-~~v~l~iwDta---GQe~~-----------r~~w~~yf~~a~~iIfV~dis-~ydq~l~ed~~~ns~~ 267 (402)
T 1azs_C 204 TSGIFETKFQV-DKVNFHMFDVG---GQRDE-----------RRKWIQCFNDVTAIIFVVASS-SYNMVIREDNQTNRLQ 267 (402)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEEC---CSGGG-----------GGGGGGGTTTCCEEEEEEETT-GGGCBCTTTSCSBHHH
T ss_pred eeeeEEEEeec-CCccceecccc---hhhhh-----------hhhhHhhccCCCEEEEEEECc-ccccccccccccchHH
Confidence 33334445567 88999999999 85321 111234678999999999987 42 11223
Q ss_pred HHHHHHHHhhccccC--CeEEEEEecCCCC
Q 044972 104 AAIHSLESLFGKKVF--DYMIVVFTRGDEL 131 (307)
Q Consensus 104 ~~l~~i~~~FG~~~~--~~~IVLfT~~D~L 131 (307)
.+..++..+...... -.+|||+++.|..
T Consensus 268 e~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 268 EALNLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 345556665544322 3578888888854
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.60 E-value=0.43 Score=43.87 Aligned_cols=18 Identities=11% Similarity=-0.322 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
.|++|+||||++..|.+.
T Consensus 52 ~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALARE 69 (340)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988764
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.58 E-value=0.54 Score=44.32 Aligned_cols=69 Identities=17% Similarity=0.002 Sum_probs=36.9
Q ss_pred CCCCCCcHHHHHHHHHCCCc--ccccc------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRRA--FKSKV------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI 74 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~--F~s~~------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI 74 (307)
+|||||||||++..|.-.-. +.|.. +..-.|.... ..+. +|.+-.+||.- .+.+. .+..+..+..
T Consensus 9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~-~gvphhlid~~---~~~e~-~s~~~F~~~a 81 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEM-DGVPHHLIDIK---DPSES-FSVADFQDLA 81 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHH-TTCCEESSSCB---CTTSC-CCHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHH-cCCCEEEeccC---Chhhh-ccHHHHHHHH
Confidence 69999999999999964321 11111 1111222111 1234 77788888877 55443 3444444443
Q ss_pred HHHH
Q 044972 75 VKCI 78 (307)
Q Consensus 75 ~kcv 78 (307)
...+
T Consensus 82 ~~~i 85 (322)
T 3exa_A 82 TPLI 85 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 486
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.57 E-value=1.4 Score=46.01 Aligned_cols=17 Identities=6% Similarity=-0.253 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|..
T Consensus 594 ~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 594 LGPTGVGKTELAKTLAA 610 (854)
T ss_dssp BSCSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999987753
No 487
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=81.48 E-value=7.4 Score=36.60 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=52.4
Q ss_pred CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC---------CHHHH
Q 044972 33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF---------SEEEG 103 (307)
Q Consensus 33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf---------T~ee~ 103 (307)
|.........+ ++..+.++||+ |- + ........+..|.|++|||+++. .| ...=.
T Consensus 148 TiGi~~~~~~~-~~v~l~iwDta---GQ-------e----~~R~~w~~yy~~a~~iIfV~diS-~ydq~l~e~~~~nr~~ 211 (340)
T 4fid_A 148 TTGIHEYDFVV-KDIPFHLIDVG---GQ-------R----SERKXWVSFFSDVDCAIFVTSLA-EYDMKLYEDGNTSRLT 211 (340)
T ss_dssp CCSCEEEEEES-SSCEEEEEECC---SC-------H----HHHHHHHTTSCSCSEEEEEEEGG-GTTCBCC--CCSBHHH
T ss_pred eeeeEEEEEEe-eeeeeccccCC---Cc-------c----cccccHHHHhccCCEEEEEEECC-ccccccccccccchHH
Confidence 33444555666 88899999999 73 1 11222335678999999999985 22 11123
Q ss_pred HHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972 104 AAIHSLESLFGKKVF--DYMIVVFTRGDELE 132 (307)
Q Consensus 104 ~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~ 132 (307)
..+.++..+...... -.+||++++.|.+.
T Consensus 212 es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 212 ESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 345566666554433 36778888888653
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.41 E-value=0.58 Score=40.08 Aligned_cols=15 Identities=13% Similarity=-0.254 Sum_probs=12.9
Q ss_pred CCCCCCcHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSI 17 (307)
Q Consensus 3 ~~~tGsGKSStgNsI 17 (307)
+|+||+|||+++-.|
T Consensus 36 ~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 36 TGGTGTGKTTFAAQF 50 (251)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred EeCCCCCHHHHHHHH
Confidence 699999999998554
No 489
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.38 E-value=11 Score=30.42 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=23.2
Q ss_pred HhcHHHHHHHHHHHHhhhhhhHHhhcCC
Q 044972 272 IKSNEEIFNLREKLERGQRETEELRNGV 299 (307)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (307)
..-.+||..|+.+|..|.-+.+.||+..
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456899999999999999999998754
No 490
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.33 E-value=0.62 Score=40.90 Aligned_cols=17 Identities=18% Similarity=-0.206 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|++||||||+++.|..
T Consensus 32 ~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYH 48 (229)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.13 E-value=0.57 Score=45.55 Aligned_cols=69 Identities=9% Similarity=-0.112 Sum_probs=37.2
Q ss_pred CCCCCCcHHHHHHHHHCCC--ccccccCC-----CC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972 3 ACEYIKICTTTGNSILGRR--AFKSKVGS-----SE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI 74 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~--~F~s~~s~-----~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI 74 (307)
+|+|||||||++..|.-.- .+.|..+. -+ .|.... ..+. +|.+-.+||.- .+.+ ..+..+..+..
T Consensus 8 ~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~--~~E~-~gv~hhlid~~---~~~~-~~s~~~F~~~a 80 (409)
T 3eph_A 8 AGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHP--LQER-EGIPHHVMNHV---DWSE-EYYSHRFETEC 80 (409)
T ss_dssp EECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCC--GGGT-TTCCEESCSCB---CTTS-CCCHHHHHHHH
T ss_pred ECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCC--HHHH-cCchhhcCCcc---ChHh-HhhHHHHHHHH
Confidence 6999999999999885321 23332221 12 122111 1234 67778888877 5443 34444444444
Q ss_pred HHHH
Q 044972 75 VKCI 78 (307)
Q Consensus 75 ~kcv 78 (307)
...+
T Consensus 81 ~~~i 84 (409)
T 3eph_A 81 MNAI 84 (409)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.97 E-value=0.47 Score=50.98 Aligned_cols=20 Identities=15% Similarity=-0.157 Sum_probs=18.1
Q ss_pred CCCCCCCcHHHHHHHHHCCC
Q 044972 2 CACEYIKICTTTGNSILGRR 21 (307)
Q Consensus 2 ~~~~tGsGKSStgNsILG~~ 21 (307)
.+|+.||||||+++.|.|.-
T Consensus 704 IiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 704 VIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp ECSCCCHHHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999963
No 493
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=80.92 E-value=3.3 Score=44.09 Aligned_cols=13 Identities=0% Similarity=-0.526 Sum_probs=11.7
Q ss_pred CCCCCCcHHHHHH
Q 044972 3 ACEYIKICTTTGN 15 (307)
Q Consensus 3 ~~~tGsGKSStgN 15 (307)
+|++||||||+++
T Consensus 616 ~G~SGSGKSTLl~ 628 (916)
T 3pih_A 616 TGVSGSGKSSLVM 628 (916)
T ss_dssp ECSTTSSHHHHHH
T ss_pred EccCCCChhhhHH
Confidence 6999999999974
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.89 E-value=0.59 Score=43.94 Aligned_cols=17 Identities=6% Similarity=-0.269 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+||||||||+++..|..
T Consensus 16 ~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 16 MGPTASGKTALAIELRK 32 (316)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 69999999999999864
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.79 E-value=0.58 Score=41.50 Aligned_cols=17 Identities=6% Similarity=-0.306 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
+|+||+|||++...|..
T Consensus 56 ~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAK 72 (310)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999998853
No 496
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.74 E-value=0.55 Score=42.72 Aligned_cols=17 Identities=6% Similarity=-0.453 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+||+|||++...|.+
T Consensus 43 ~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999998875
No 497
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=80.47 E-value=0.69 Score=40.26 Aligned_cols=17 Identities=6% Similarity=-0.310 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHHC
Q 044972 3 ACEYIKICTTTGNSILG 19 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG 19 (307)
.|+|||||+|.+..|.-
T Consensus 6 ~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988853
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.28 E-value=1.8 Score=49.97 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC-----------------c
Q 044972 3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS-----------------A 65 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~-----------------~ 65 (307)
.||||+|||+++-.+.-.- | . .|..+.+||++ +.+++- .
T Consensus 1433 ~GppGtGKT~LA~ala~ea--------------~------~-~G~~v~Fi~~e---~~~~~l~a~~~G~dl~~l~v~~~~ 1488 (2050)
T 3cmu_A 1433 YGPESSGKTTLTLQVIAAA--------------Q------R-EGKTCAFIDAE---HALDPIYARKLGVDIDNLLCSQPD 1488 (2050)
T ss_dssp ECCTTSSHHHHHHHHHHHH--------------H------T-TTCCEEEECTT---SCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ECCCCCCHHHHHHHHHHHH--------------H------H-cCCcEEEEEcc---cccCHHHHHHcCCCchhceeecCC
Confidence 6999999999997774311 0 0 45567777777 654221 1
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCH---------------HHHHHHHHHHHhhccccCCeEEEEEec
Q 044972 66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSE---------------EEGAAIHSLESLFGKKVFDYMIVVFTR 127 (307)
Q Consensus 66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~---------------ee~~~l~~i~~~FG~~~~~~~IVLfT~ 127 (307)
+.+...+.+.+++.. .+|+++ +|-+++ -+.. +++..-..+.++.|---...++|+||.
T Consensus 1489 ~~E~~l~~~~~lvr~--~~~~lV-VIDsi~-al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1489 TGEQALEICDALARS--GAVDVI-VVDSVA-ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp SHHHHHHHHHHHHHH--TCCSEE-EESCGG-GCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHHHHHHHHHhc--CCCCEE-EEcChh-HhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 223444444444433 356543 444453 2221 334344556666666666778888774
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.96 E-value=0.33 Score=48.79 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHCC
Q 044972 3 ACEYIKICTTTGNSILGR 20 (307)
Q Consensus 3 ~~~tGsGKSStgNsILG~ 20 (307)
+|++||||||+++.|.|.
T Consensus 375 iG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EESSCHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHh
Confidence 599999999999999875
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.86 E-value=0.67 Score=42.98 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=15.1
Q ss_pred CCCCCCCcHHHHHHHHH
Q 044972 2 CACEYIKICTTTGNSIL 18 (307)
Q Consensus 2 ~~~~tGsGKSStgNsIL 18 (307)
.+|++|+|||+++.+|.
T Consensus 28 i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 28 IIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 37999999999999983
Done!