BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044973
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
          Length = 175

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 13/146 (8%)

Query: 42  ALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVXXXXXXXXXXYATSSVEQS 101
           A +W L+ +      V   TSD     + L+HVQ   +             YA+    + 
Sbjct: 30  AFEWTLEKI------VRSNTSD---FKILLLHVQVVDED----GFDDVDSIYASPEDFRD 76

Query: 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161
            R++ +     LL   +  C +  V  E  + TGDPKD+ICQ  +++  D LVVGSRGLG
Sbjct: 77  XRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG 136

Query: 162 KIKRALLGSVSDYCAHHVQCPIIIVK 187
           + ++  +G+VS +C  H +CP+  +K
Sbjct: 137 RFQKVFVGTVSAFCVKHAECPVXTIK 162


>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
           Thermus Themophilus Hb8
 pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
          Length = 137

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 127 KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
           K + L+L G P + I QAA     DL+V+G+RGLG +    LGS S        CP+++V
Sbjct: 77  KEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136

Query: 187 K 187
           +
Sbjct: 137 R 137


>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
 pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
          Length = 294

 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 108 ENSAALLSRALQICKDKNVKAETL--VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKR 165
           E +  +L    Q  +   +KAE +     GDP   I +A+E  +   +  GSRG  K K+
Sbjct: 82  EKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEIIKASE--NYSFIAXGSRGASKFKK 139

Query: 166 ALLGSVSDYCAHHVQCPIIIVK 187
            LLGSVS+   H  + P+ I K
Sbjct: 140 ILLGSVSEGVLHDSKVPVYIFK 161



 Score = 33.9 bits (76), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/86 (20%), Positives = 38/86 (44%)

Query: 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161
           I  +++ +  A L    ++   + ++    + +G P   I    E+++   +  GSRG G
Sbjct: 204 IHVSEDGDKTADLRVXEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFXGSRGAG 263

Query: 162 KIKRALLGSVSDYCAHHVQCPIIIVK 187
            +   +LGS S+        P+ + K
Sbjct: 264 SVXTXILGSTSESVIRRSPVPVFVCK 289


>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
 pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
          Length = 162

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 121 CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180
            +D   K + +++ G P + I + AE   +D++++GS G   +K  LLGSV++       
Sbjct: 92  LEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSN 151

Query: 181 CPIIIVK 187
            P+++VK
Sbjct: 152 KPVLVVK 158


>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea
          Length = 150

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 128 AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
           A   ++ G+P++ I + AEQ ++DL+VVGS G   +   LLGS ++   H+ +C ++ V+
Sbjct: 88  AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea With Amp Bound
          Length = 150

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 128 AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
           A   ++ G+P++ I + AEQ ++DL+VVGS G   +   LLGS ++   H+ +C ++ V+
Sbjct: 88  AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
          Length = 147

 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 127 KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
           K    V  G P   I + A +   DL+V+G++G    K  LLGSV+   A    CP+++V
Sbjct: 88  KVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147


>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
          Length = 170

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 104 KAQEENSAALLSRALQI---CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160
           K +EE S  L  +A ++    + KNV+  T++  G P D I + AE+ ++ L+++ SRG 
Sbjct: 71  KLKEEASRKLQEKAEEVKRAFRAKNVR--TIIRFGIPWDEIVKVAEEENVSLIILPSRGK 128

Query: 161 GKIKRALLGSVSDYCAHHVQCPIIIVK 187
             +    LGS         + P++I+K
Sbjct: 129 LSLSHEFLGSTVMRVLRKTKKPVLIIK 155


>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
          Length = 163

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 124 KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183
           KNV+   +V  G P D +   A++   DLLVVG+ GL  I   LLGSV    +   +  +
Sbjct: 96  KNVEERPIV--GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDV 153

Query: 184 IIV 186
           +IV
Sbjct: 154 LIV 156


>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
          Length = 146

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 125 NVKAETLVLTGDPKDMICQAAEQM-HMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183
           N+K E  +  G PK  I   A+Q   +DL+V+G+ G     R  +GS + Y   H  C +
Sbjct: 85  NLKTE--ISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNV 142

Query: 184 IIVK 187
           I+++
Sbjct: 143 IVIR 146


>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
           Tuberculosis
          Length = 305

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
           NV    +V+   P   + Q +E+    L+VVGSRG G     L+GSV +  A   + P+I
Sbjct: 233 NVAITRVVVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGXLVGSVGETVAQLARTPVI 290

Query: 185 IVK 187
           + +
Sbjct: 291 VAR 293



 Score = 36.2 bits (82), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 21/106 (19%)

Query: 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDP---KDMICQAAEQMHMD------L 152
           + + Q+++   L+  AL++ +  +++A      G P    +++  AA    +D      L
Sbjct: 60  VLRWQQDHGRHLIDDALKVVEQASLRA------GPPTVHSEIVPAAAVPTLVDXSKDAVL 113

Query: 153 LVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII------VKPPPKQ 192
            VVG  G G+    LLGSVS     H  CP++I      V P P+Q
Sbjct: 114 XVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVXPHPQQ 159


>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
          Length = 309

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 15/94 (15%)

Query: 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDP---KDMICQAAEQMHMD------L 152
           + + Q+++   L+  AL++ +  +++A      G P    +++  AA    +D      L
Sbjct: 72  VLRWQQDHGRHLIDDALKVVEQASLRA------GPPTVHSEIVPAAAVPTLVDMSKDAVL 125

Query: 153 LVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
           +VVG  G G+    LLGSVS     H  CP++I+
Sbjct: 126 MVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159



 Score = 36.6 bits (83), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
           NV    +V+   P   + Q +E+    L+VVGSRG G     L+GSV +  A   + P+I
Sbjct: 245 NVAITRVVVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGMLVGSVGETVAQLARTPVI 302

Query: 185 IVK 187
           + +
Sbjct: 303 VAR 305


>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
           Proteus Mirabilis Hi4320
          Length = 319

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 129 ETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
           +T V  G P+ +I Q  E+++  ++V+G  G   +  A LG+ ++    H++C ++ +KP
Sbjct: 246 KTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305


>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
           Kpn_01444 - Atpase
 pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
           Kpn_01444 - Atpase
          Length = 144

 Score = 33.9 bits (76), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 132 VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
           V  G PKD I   A+ +  DL+++ S     I   LLGS +     H +C +++V+
Sbjct: 90  VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144


>pdb|3FDX|A Chain A, Putative Filament Protein  UNIVERSAL STRESS PROTEIN F FROM
           KLEBSIELLA Pneumoniae.
 pdb|3FDX|B Chain B, Putative Filament Protein  UNIVERSAL STRESS PROTEIN F FROM
           KLEBSIELLA Pneumoniae
          Length = 143

 Score = 33.9 bits (76), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 132 VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
           V  G PKD I   A+ +  DL+++ S     I   LLGS +     H +C +++V+
Sbjct: 89  VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143


>pdb|3AB7|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
           Universal Stress Protein Ttha0350 From Thermus
           Thermophilus Hb8
 pdb|3AB7|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
           Universal Stress Protein Ttha0350 From Thermus
           Thermophilus Hb8
 pdb|3AB8|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
           Universal Stress Protein Ttha0350 Complexed With Atps.
 pdb|3AB8|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
           Universal Stress Protein Ttha0350 Complexed With Atps
          Length = 268

 Score = 33.9 bits (76), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 121 CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180
            +D  V+A  LVL GD  D + +   Q   DLL +G+     ++R + GS ++    + Q
Sbjct: 208 LRDHGVEASALVLGGDAADHLLRL--QGPGDLLALGA----PVRRLVFGSTAERVIRNAQ 261

Query: 181 CPIIIVK 187
            P++  +
Sbjct: 262 GPVLTAR 268


>pdb|3IDF|A Chain A, The Crystal Structure Of A Usp-Like Protein From Wolinella
           Succinogenes To 2.0a
 pdb|3IDF|B Chain B, The Crystal Structure Of A Usp-Like Protein From Wolinella
           Succinogenes To 2.0a
          Length = 138

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 68  TVTLVHVQQPFQHFVXXXXXXXXXXYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK 127
           T+TL+HV+  F  +            A  +    I   +EE +  L  +      +K + 
Sbjct: 32  TLTLIHVKPEFMLY----------GEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81

Query: 128 AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
              ++  G+P +M+ + A+  +  LL++GS     + + +  S  D        P++IVK
Sbjct: 82  PFVVIKEGEPVEMVLEEAKDYN--LLIIGSSENSFLNK-IFASHQDDFIQKAPIPVLIVK 138


>pdb|3BWH|A Chain A, Atomic Resolution Structure Of Cucurmosin, A Novel Type 1
           Rip From The Sarcocarp Of Cucurbita Moschata
          Length = 245

 Score = 30.0 bits (66), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 108 ENSAALLSRALQICKDKNVKAETLVLTGDPK 138
           EN+ + LS+ +QI K+KN + ET V+  DP+
Sbjct: 187 ENNWSALSKQIQIAKNKNGQFETPVILIDPQ 217


>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
 pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
          Length = 155

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 114 LSRALQICKDKNVKAET--LVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSV 171
           LS A+ I + +  + E   LV   +P D I   A+++    +V+G R      + + GSV
Sbjct: 80  LSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSV 139

Query: 172 SDYCAHHVQCPIIIVK 187
           +         P+I +K
Sbjct: 140 ARDVILKANKPVICIK 155


>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
          Length = 155

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 114 LSRALQICKDKNVKAET--LVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSV 171
           LS A+ I + +  + E   LV   +P D I   A+++    +V+G R      + + GSV
Sbjct: 80  LSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSV 139

Query: 172 SDYCAHHVQCPIIIVK 187
           +         P+I +K
Sbjct: 140 ARDVILKANKPVICIK 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,833,466
Number of Sequences: 62578
Number of extensions: 149586
Number of successful extensions: 396
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 24
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)