BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044973
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 22 MGKNEMKVMVALDESGESFY---------ALKWALDNLFGITGAVTPGTSDRGAGTVTLV 72
MG KVMVA++ S Y A +W L+ + V TSD + L+
Sbjct: 1 MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKI------VRSNTSD---FKILLL 51
Query: 73 HVQQPFQHFVFPAGPGGA-AFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETL 131
HVQ V G + YA+ + +R++ + LL + C + V E
Sbjct: 52 HVQ-----VVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW 106
Query: 132 VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+ TGDPKD+ICQ +++ D LVVGSRGLG+ ++ +G+VS +C H +CP++ +K
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 82 VFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMI 141
++P+ G AA + +++ + + Q E L S Q+ +D V E V G+P I
Sbjct: 49 IYPSFYGEAAIGFSQIIKEHLEEQQTEAREWLQSIVQQVQED-GVACEWDVKVGEPGRWI 107
Query: 142 CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
A+ DL+V+G RGL + LGSVS Y HHVQC ++IV+
Sbjct: 108 RDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++VA D S S AL A+D + A+T S H + Q + P P
Sbjct: 6 RIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHS----------HDMKDNQTVIDPPRP 55
Query: 88 GGAAFYAT-----------SSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGD 136
A Y + S V E+ + +++ A + ++ + +L GD
Sbjct: 56 AAEASYISGGMTSVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLNEQQADGDIDILEGD 115
Query: 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
P + I + A ++ D++V GSR ++K+ + GSVS+ + P++IVK
Sbjct: 116 PAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIVK 166
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161
IR ++ +L A + +K V+AET+ G+P I A++ + L+VVGSRG+
Sbjct: 63 IRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGIS 122
Query: 162 KIKRALLGSVSDYCAHHVQCPIIIVK 187
+K +LGSVS + CP++IV+
Sbjct: 123 GLKEMMLGSVSHKVSQLSTCPVLIVR 148
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKR 165
+EE AL + ++ ++ VK T +L G P + I + AE+ DL+V+G+ G ++R
Sbjct: 85 KEEGQEAL-KKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLER 143
Query: 166 ALLGSVSDYCAHHVQCPIIIVKPPPKQ 192
LLGSV++ + CP+++VK P K+
Sbjct: 144 ILLGSVAERVIKNAHCPVLVVKKPKKE 170
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 95 TSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLV 154
T V Q + E+ L + Q +++ + + G P +ICQ A+Q + D++V
Sbjct: 13 TMEVWQQQWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRAKQDNSDIIV 72
Query: 155 VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189
VG RG + LLGSV +Y HH C + +V P
Sbjct: 73 VGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVPTP 107
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFP 84
E ++V +D S ES A++WA A D +TL+HV P +P
Sbjct: 6 TEYGILVGVDSSAESDAAVRWA---------AREASLHD---APITLMHVIAPVV-VSWP 52
Query: 85 AGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKD-----KNVKAETLVLTGDPKD 139
AGP + AT + + QEEN+ + +A ++ D + +T +
Sbjct: 53 AGP----YMAT------VLECQEENARHAIEQAQKVVADCLGETHGLTVQTEIRKESVAR 102
Query: 140 MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
+ A++ M +VVG+RG+G + R LLGS S H+ P+++V
Sbjct: 103 TLIDASKSAQM--VVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 106 QEENSAALLSRALQICKDK--NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKI 163
QEE ALL+ L +++ +VK V P + + A+Q L+VVGS G G
Sbjct: 211 QEETGRALLAERLAGWQERYPDVKVHRRVERAQPAYWLLEEAKQAQ--LVVVGSHGRGGF 268
Query: 164 KRALLGSVSDYCAHHVQCPIIIVKP 188
LLGSVS A P+++V+P
Sbjct: 269 TGMLLGSVSSRVAQSATTPVMVVRP 293
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1788 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q5HF64|Y1759_STAAC Putative universal stress protein SACOL1759 OS=Staphylococcus
aureus (strain COL) GN=SACOL1759 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q99TF3|Y1710_STAAM Putative universal stress protein SAV1710 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1710 PE=1 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2FG28|Y1656_STAA3 Putative universal stress protein SAUSA300_1656 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_1656 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A0N0|Y1653_STAAW Putative universal stress protein MW1653 OS=Staphylococcus aureus
(strain MW2) GN=MW1653 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6G8L7|Y1637_STAAS Putative universal stress protein SAS1637 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1637 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2YTD0|Y1569_STAAB Putative universal stress protein SAB1569 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB1569 PE=3 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A551|Y1532_STAAN Putative universal stress protein SA1532 OS=Staphylococcus aureus
(strain N315) GN=SA1532 PE=1 SV=1
Length = 166
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGP 87
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 6 NILIAVDGSHEA----EWAFNRAVGV--------AKRNDAKLTIVNVIDSRTYSSYEV-- 51
Query: 88 GGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-A 145
Y E+S A+E LL+ ++ + VK ET + G PK +I + A
Sbjct: 52 -----YDAQFTEKSKHFAEE-----LLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLA 101
Query: 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 102 HEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 97 SVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVG 156
S EQS R E A +L + + DK V ++ G P+DMI + D L+VG
Sbjct: 187 SDEQSYRSLAEHIMAGILKK---VDDDKAVSIIVELVVGKPQDMILRTIHVYSPDSLIVG 243
Query: 157 SRG--LGKIKRAL-LGSVSDYCAHHVQCPIIIVKPPPKQHHTKQ 197
+RG L + L GSVS +C P+I+V+P K+ +K
Sbjct: 244 TRGKALNSFQSLLSSGSVSKFCLQKSPIPVIVVRPDRKRVRSKN 287
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 69 VTLVHVQQPFQHFVFPAGPGGAAF-----YATSSVEQSIRKAQEENSAALLSRALQICKD 123
+TL+H+ P V P G + + + +Q I +A+E L+ +L K
Sbjct: 38 ITLLHIVAP----VVVGWPVGQLYANMTEWQKDNAQQVIEQAREA-----LTNSLGESKP 88
Query: 124 KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183
V E + P + A++Q L+VVGS+G+G + R LLGS+S HH +CP+
Sbjct: 89 PQVHTELVFSNVVPT--LIDASQQAW--LMVVGSQGMGALGRLLLGSISTALLHHARCPV 144
Query: 184 IIV 186
I+
Sbjct: 145 AII 147
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 104 KAQEENSAALLSRALQICKDK--NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161
+ +E+ A +L+ L +++ +V+ ++ P + + +EQ L+VVGS G G
Sbjct: 209 REREKREAEVLAERLAGWQEQYPDVRVHRSLVCDKPARWLLEHSEQAQ--LVVVGSHGRG 266
Query: 162 KIKRALLGSVSDYCAHHVQCPIIIVKP 188
LLGSVS AH V+ P+I+V+P
Sbjct: 267 GFSGMLLGSVSSAVAHSVRIPVIVVRP 293
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 127 KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
+ + L+L G P + I QAA DL+V+G+RGLG + LGS S CP+++V
Sbjct: 77 REDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAVGSLFLGSQSQKVVAEAPCPVLLV 136
Query: 187 K 187
+
Sbjct: 137 R 137
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 103 RKAQEENSAALLSRALQICKD----------KNVKAETLVLTGDPKDMICQAAEQMHMDL 152
+K +E L R +I +D NVK ++L G+P D I + AE+ +D+
Sbjct: 48 KKVKEMMVKELTERGKEILRDMEKGLTGPENPNVKFRGVMLEGNPADEIVKLAEEEDVDV 107
Query: 153 LVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+++G+ G + + LLGSVS+ H+ C I +V+
Sbjct: 108 IIMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 141
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 103 RKAQEENSAALLSRALQICKD----------KNVKAETLVLTGDPKDMICQAAEQMHMDL 152
+K +E L R +I +D NV ++ GDP D I + AE+ +D+
Sbjct: 51 KKVKEMMVKELTQRGNEILRDMEKGLTGPENPNVSFRAVMREGDPADEIVKVAEEEDVDV 110
Query: 153 LVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+V+G+ G + + LLGSVS+ H+ C I +V+
Sbjct: 111 IVMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 144
>sp|P95192|Y3134_MYCTU Universal stress protein Rv3134c/MT3220 OS=Mycobacterium
tuberculosis GN=Rv3134c PE=2 SV=1
Length = 268
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 31/164 (18%)
Query: 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPG 88
V+V +D S + +A WA+D AV R LV+V P Q + AG G
Sbjct: 10 VVVGIDGSRAATHAALWAVDE------AVNRDIPLR------LVYVIDPSQ--LSAAGEG 55
Query: 89 GAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQM 148
G A +++ + RK + + VK ET VL G P + Q E
Sbjct: 56 GGQSAARAALHDASRKVEATG--------------QPVKIETEVLCGRPLTKLMQ--ESR 99
Query: 149 HMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQ 192
+L VGS GL + R GSV+ A CP+ ++ P P +
Sbjct: 100 SAAMLCVGSVGLDHV-RGRRGSVAATLAGSALCPVAVIHPSPAE 142
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 129 ETLVLTGDPKDMICQA-AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
ET + G PK +I + A ++ +DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 84 ETRLEFGSPKAIIPKKLASELGVDLIMCGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 66 AGTVTLVHV---QQPFQHFVFPAGPGGAAFY-ATSSVEQSIRKAQEENSAALLSRALQIC 121
A V L+HV ++ + +F G A + E ++ E + + +
Sbjct: 33 AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92
Query: 122 KDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181
+D K + +++ G P + I + AE +D++++GS G +K LLGSV++
Sbjct: 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNK 152
Query: 182 PIIIVK 187
P+++VK
Sbjct: 153 PVLVVK 158
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPG 88
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 7 ILIAVDGSHEA----EWAFNKAVGV--------AKRNDAQLTIVNVIDSRTYSSYEV--- 51
Query: 89 GAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-AE 146
Y E+S ++E LL ++ + VK +T + G PK +I + A
Sbjct: 52 ----YDAQFTEKSKHFSEE-----LLKGYKEVATNAGVKNVDTRLEFGSPKAIIPKKLAR 102
Query: 147 QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 103 DVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPG 88
+++A+D S E+ +WA + G+ + R +T+V+V + +
Sbjct: 7 ILIAVDGSHEA----EWAFNKAVGV--------AKRNDAQLTIVNVIDSRTYSSYEV--- 51
Query: 89 GAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQA-AE 146
Y E+S ++E LL ++ + VK +T + G PK +I + A
Sbjct: 52 ----YDAQFTEKSKHFSEE-----LLKGYKEVATNAGVKNVDTRLEFGSPKAIIPKKLAR 102
Query: 147 QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
+ DL++ G+ GL ++R ++GSVS+ H C +++V+
Sbjct: 103 DVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|P44195|USPE_HAEIN Universal stress protein E homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uspE PE=1
SV=2
Length = 309
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 24 KNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVF 83
K+ +++VA++ SGE Y ++ + TG +RG V LV +
Sbjct: 154 KHPRRILVAVNVSGEQEYQDEFNQE--LVETGISLAENLNRG--NVHLV--------AAY 201
Query: 84 PAGPGGAAF----YATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKD 139
P+ P A + TS E IR N AL + I +D T V G P++
Sbjct: 202 PSAPINMAIDLPEFNTSGYENGIRGQHLINMKALRQK-FGIDED-----HTHVREGFPEE 255
Query: 140 MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191
+I + A+++ +L+++G+ G + ALLG+ +++ + C ++ +KP K
Sbjct: 256 VIPEVAKEIEAELVILGTVGRTGLSAALLGNTAEHVISKLSCNLLGIKPSKK 307
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 48/187 (25%)
Query: 23 GKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP--FQH 80
G + + ++V +D+S + A++WA + ++ +TLVH P
Sbjct: 4 GNSSLGIIVGIDDSPAAQVAVRWAARD------------AELRKIPLTLVHAVSPEVATW 51
Query: 81 FVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDP--- 137
P PG + + Q+++ L+ AL++ + +++A G P
Sbjct: 52 LEVPLPPG-------------VLRWQQDHGRHLIDDALKVVEQASLRA------GPPTVH 92
Query: 138 KDMICQAAEQMHMD------LLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII------ 185
+++ AA +D L+VVG G G+ LLGSVS H CP++I
Sbjct: 93 SEIVPAAAVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDS 152
Query: 186 VKPPPKQ 192
V P P+Q
Sbjct: 153 VMPHPQQ 159
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
NV +V+ P + Q +E+ L+VVGSRG G L+GSV + A + P+I
Sbjct: 233 NVAITRVVVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGMLVGSVGETVAQLARTPVI 290
Query: 185 IVK 187
+ +
Sbjct: 291 VAR 293
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 124 KNVKAETLVLTGDPKDMICQA-AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCP 182
KNV ET + G PK +I + A + DL++ G+ GL ++R ++GSVS+ H C
Sbjct: 81 KNV--ETRLEFGSPKAIIPKKLATDVDADLIMCGTSGLNAVERFIVGSVSEAIVRHSPCD 138
Query: 183 IIIVK 187
+++V+
Sbjct: 139 VLVVR 143
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRAL 167
E A LL A + + + +T+ G IC A++++ DL+V+G RGLG +
Sbjct: 78 EAVAKLLEAAQAVFSQQGIATKTIEREGMASFTICDVADEVNADLIVMGCRGLGLTTEGV 137
Query: 168 LGSVSDYCAHHVQCPIIIV 186
SV+ + CP+++V
Sbjct: 138 AESVTARVINLSPCPVLVV 156
>sp|O06153|Y1636_MYCTU Universal stress protein Rv1636/MT1672 OS=Mycobacterium
tuberculosis GN=Rv1636 PE=1 SV=1
Length = 146
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 124 KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183
KNV+ +V G P D + A++ DLLVVG+ GL I LLGSV + + +
Sbjct: 83 KNVEERPIV--GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDV 140
Query: 184 IIV 186
+IV
Sbjct: 141 LIV 143
>sp|P0AAC3|USPE_SHIFL Universal stress protein E OS=Shigella flexneri GN=uspE PE=3 SV=2
Length = 316
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G I A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC0|USPE_ECOLI Universal stress protein E OS=Escherichia coli (strain K12) GN=uspE
PE=1 SV=2
Length = 316
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G I A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC1|USPE_ECOL6 Universal stress protein E OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspE PE=3 SV=2
Length = 316
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G I A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC2|USPE_ECO57 Universal stress protein E OS=Escherichia coli O157:H7 GN=uspE PE=3
SV=2
Length = 316
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G I A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 106 QEENSAALLSRALQICK-----DKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160
QE+ +++ A+++ K D+ + ++ ++ P + + + + M +V+GS G
Sbjct: 64 QEDEGRQIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEISNEAEM--VVLGSSGR 121
Query: 161 GKIKRALLGSVSDYCAHHVQCPIIIV 186
G + R LLGSVS CP+ ++
Sbjct: 122 GALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
+V +V+ P + Q + L+VVGS G G + LLGSVS+ H + P+I
Sbjct: 233 DVPVSRVVVCDRPARKLVQKSASAQ--LVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVI 290
Query: 185 IVK 187
+ +
Sbjct: 291 VAR 293
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 106 QEENSAALLSRALQICK-----DKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160
QE+ +++ A+++ K D+ + ++ ++ P + + + + M +V+GS G
Sbjct: 64 QEDEGRQIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEISNEAEM--VVLGSSGR 121
Query: 161 GKIKRALLGSVSDYCAHHVQCPIIIV 186
G + R LLGSVS CP+ ++
Sbjct: 122 GALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
+V +V+ P + Q + L+VVGS G G + LLGSVS+ H + P+I
Sbjct: 233 DVPVSRVVVCDRPARKLVQKSASAQ--LVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVI 290
Query: 185 IVK 187
+ +
Sbjct: 291 VAR 293
>sp|Q8ZP84|USPE_SALTY Universal stress protein E OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspE PE=3 SV=3
Length = 315
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G + A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|Q8Z788|USPE_SALTI Universal stress protein E OS=Salmonella typhi GN=uspE PE=3 SV=3
Length = 315
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T V G P+++I AE + ++V+G+ G + A LG+ ++ H++C ++++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|O06188|Y2624_MYCTU Universal stress protein Rv2624c/MT2699 OS=Mycobacterium
tuberculosis GN=Rv2624c PE=1 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 35/171 (20%)
Query: 21 MMGKNE--MK-VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77
M G+ E MK ++V +D S + A W +D I+ AV + LV V +P
Sbjct: 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDE--AISRAVP----------LRLVSVIKP 48
Query: 78 FQHFVFPAGPGGAAF-YATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGD 136
P + + E+S+R+AQ AA K VK ET + G
Sbjct: 49 TH-------PSPDDYDRDLAHAERSLREAQSAVEAA----------GKLVKIETDIPRGP 91
Query: 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
++ +A+ M + VGS G+G+ ++LGS + A CP+ +++
Sbjct: 92 AGPVLVEASRDAEM--ICVGSVGIGRYASSILGSTATELAEKAHCPVAVMR 140
>sp|P60005|USPE_PHOLL Universal stress protein E OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=uspE PE=3 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 130 TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188
T + G P+ +I Q ++M+ ++V+G G + A LG+ +++ H++C I+ +KP
Sbjct: 244 THIHEGLPESVIPQMCDEMNAGIIVLGILGRTGLSAAFLGNTAEHVIDHLKCDILTIKP 302
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 28 KVMVALDES-GESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAG 86
K+ VA+D+ +S L WAL N G + L+HV QP Q
Sbjct: 46 KIFVAVDKHVAKSKSTLIWALQNT--------------GGKKICLIHVHQPSQMIPL--- 88
Query: 87 PGGAAFYATSSVEQSIRKAQE---ENSAALLSRALQICKDKNVKAETLVLTGDP-KDMIC 142
GA F + E+ +R +E E +L L+IC+ + V+AE + + + ++ I
Sbjct: 89 -MGAKFPVGAVKEEEVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIV 147
Query: 143 QAAEQMHMDLLVVGS 157
Q ++ + LV+G+
Sbjct: 148 QLISELGIRKLVMGA 162
>sp|P67091|USPF_SALTY Universal stress protein F OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspF PE=3 SV=1
Length = 144
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 80 HF--VFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETL---VLT 134
HF V P+ P A+ S E A ++ A S+ I K N+ A+ + V
Sbjct: 36 HFLTVIPSLPYYASLGLAYSAELP---AMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAE 92
Query: 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
G PKD I + A+++ D++++ S I LLGS + H +C +++V+
Sbjct: 93 GSPKDKILEMAKKLPADMVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P67092|USPF_SALTI Universal stress protein F OS=Salmonella typhi GN=uspF PE=3 SV=1
Length = 144
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 80 HF--VFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETL---VLT 134
HF V P+ P A+ S E A ++ A S+ I K N+ A+ + V
Sbjct: 36 HFLTVIPSLPYYASLGLAYSAELP---AMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAE 92
Query: 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
G PKD I + A+++ D++++ S I LLGS + H +C +++V+
Sbjct: 93 GSPKDKILEMAKKLPADMVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 138 KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQHHTK 196
K +I + + + L+V+GSRG +K LLGS S+Y + P+++ + K++ +
Sbjct: 520 KHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPVMVARKKLKKNKQR 578
>sp|Q83AC1|USPA1_COXBU Universal stress protein A homolog 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA1 PE=3 SV=1
Length = 144
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 67 GTVTLVHVQQPFQHFVFPAGPGGA-AFYATSSVEQSIRKAQEENSAALLSRALQICKDKN 125
T+ +VHV +H P GG + ++EQ+I + E AL ++C
Sbjct: 32 ATLDVVHV---IEHS--PVAYGGEFSIPINVNLEQTI---ESEARKALT----ELCHTVK 79
Query: 126 VKAETL-VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184
V +E L+G K M+ + AE++++DL+VVG+ G + + LLGS ++ H C ++
Sbjct: 80 VPSERQHTLSGVVKHMVIELAEKLNIDLIVVGTHGHHGLDK-LLGSRANAILHVATCDVL 138
Query: 185 IV 186
V
Sbjct: 139 AV 140
>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
Length = 146
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 116 RALQICKDKNVKAE-TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174
R +I N+ ++ +V G K +I + A+ +DL++VGS G I+ LLGS S+
Sbjct: 71 RMNEIASQLNISSDHQIVKVGPAKFLILEQAKNWGVDLIIVGSHGRHGIQ-LLLGSTSNA 129
Query: 175 CAHHVQCPIIIVK 187
H +C ++ V+
Sbjct: 130 VLHGAKCDVLAVR 142
>sp|P0A5F8|Y2019_MYCBO Universal stress protein Mb2019 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2019 PE=3 SV=1
Length = 317
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 98 VEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGS 157
VEQ+ + A E +S+ RA QI + VL G + + Q+ M +V+G
Sbjct: 83 VEQAHKVALEASSSG---RAAQITGE--------VLHGQIVPTLANISRQVAM--VVLGY 129
Query: 158 RGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
RG G + ALLGSVS H P+ ++
Sbjct: 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>sp|P0A5F7|Y1996_MYCTU Universal stress protein Rv1996/MT2052 OS=Mycobacterium
tuberculosis GN=Rv1996 PE=1 SV=1
Length = 317
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 98 VEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGS 157
VEQ+ + A E +S+ RA QI + VL G + + Q+ M +V+G
Sbjct: 83 VEQAHKVALEASSSG---RAAQITGE--------VLHGQIVPTLANISRQVAM--VVLGY 129
Query: 158 RGLGKIKRALLGSVSDYCAHHVQCPIIIV 186
RG G + ALLGSVS H P+ ++
Sbjct: 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>sp|Q8XBT3|USPG_ECO57 Universal stress protein G OS=Escherichia coli O157:H7 GN=uspG PE=3
SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187
G +D + + AE++ D++V+GSR I LLGS + H P+++V+
Sbjct: 91 GSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVVR 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,237,798
Number of Sequences: 539616
Number of extensions: 2793275
Number of successful extensions: 7623
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7559
Number of HSP's gapped (non-prelim): 79
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)