Query 044973
Match_columns 197
No_of_seqs 150 out of 1824
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 6.6E-25 1.4E-29 163.2 16.8 139 26-187 2-142 (142)
2 PRK15005 universal stress prot 99.9 9.7E-25 2.1E-29 162.1 16.7 141 26-187 2-144 (144)
3 cd01989 STK_N The N-terminal d 99.9 2.7E-24 5.8E-29 160.2 16.9 141 28-188 1-145 (146)
4 PRK09982 universal stress prot 99.9 6.4E-24 1.4E-28 158.2 15.2 139 26-190 3-141 (142)
5 PRK15118 universal stress glob 99.9 5.4E-23 1.2E-27 153.0 15.7 139 25-190 2-141 (144)
6 PRK10116 universal stress prot 99.9 7.2E-22 1.6E-26 146.4 16.7 139 25-190 2-141 (142)
7 PF00582 Usp: Universal stress 99.9 5.2E-22 1.1E-26 144.3 15.3 138 27-187 3-140 (140)
8 cd01988 Na_H_Antiporter_C The 99.9 7.7E-22 1.7E-26 143.8 15.3 131 28-187 1-132 (132)
9 PRK11175 universal stress prot 99.9 6.2E-22 1.3E-26 164.3 16.7 146 25-190 2-148 (305)
10 cd01987 USP_OKCHK USP domain i 99.9 4.2E-21 9E-26 139.2 12.8 123 28-187 1-124 (124)
11 PRK11175 universal stress prot 99.8 2.9E-19 6.3E-24 148.2 16.5 143 25-190 151-302 (305)
12 cd00293 USP_Like Usp: Universa 99.8 1E-18 2.2E-23 125.7 16.2 130 28-186 1-130 (130)
13 COG0589 UspA Universal stress 99.8 1.3E-17 2.9E-22 123.8 18.2 146 26-189 5-153 (154)
14 PRK12652 putative monovalent c 99.6 1.9E-13 4E-18 115.8 17.7 133 25-189 4-152 (357)
15 COG2205 KdpD Osmosensitive K+ 99.3 2.6E-11 5.5E-16 109.8 14.7 129 27-192 249-378 (890)
16 PRK10490 sensor protein KdpD; 99.3 3.3E-11 7.1E-16 113.5 14.7 125 26-189 250-375 (895)
17 cd01984 AANH_like Adenine nucl 98.3 3E-06 6.5E-11 57.2 7.4 84 29-185 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.6 0.001 2.2E-08 62.8 11.7 150 26-190 458-617 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.1 0.018 3.9E-07 44.4 12.0 94 28-161 1-111 (189)
20 PLN03159 cation/H(+) antiporte 96.5 0.042 9.1E-07 52.1 11.8 145 26-188 630-794 (832)
21 cd01992 PP-ATPase N-terminal d 96.4 0.092 2E-06 40.1 11.4 94 28-161 1-108 (185)
22 PF01171 ATP_bind_3: PP-loop f 96.3 0.099 2.1E-06 40.2 11.2 94 28-161 1-108 (182)
23 PRK12342 hypothetical protein; 95.3 0.26 5.7E-06 40.2 10.0 107 32-184 30-140 (254)
24 PRK03359 putative electron tra 94.7 0.33 7.1E-06 39.7 9.1 106 33-183 32-142 (256)
25 cd01993 Alpha_ANH_like_II This 94.2 0.82 1.8E-05 34.6 10.1 95 28-160 1-117 (185)
26 PF01012 ETF: Electron transfe 94.2 0.86 1.9E-05 34.2 10.1 88 28-160 1-101 (164)
27 TIGR00591 phr2 photolyase PhrI 93.9 1.5 3.2E-05 38.7 12.2 91 34-158 32-122 (454)
28 COG0041 PurE Phosphoribosylcar 93.4 0.7 1.5E-05 34.6 7.8 71 113-191 17-91 (162)
29 PF00875 DNA_photolyase: DNA p 93.1 2.4 5.1E-05 31.8 10.7 103 65-188 23-125 (165)
30 COG2086 FixA Electron transfer 93.0 0.67 1.4E-05 38.0 8.0 82 32-160 32-122 (260)
31 PRK10696 tRNA 2-thiocytidine b 92.8 3.8 8.3E-05 33.3 12.3 99 22-161 25-143 (258)
32 TIGR01162 purE phosphoribosyla 91.6 1.4 3.1E-05 33.2 7.7 71 113-191 13-87 (156)
33 COG0037 MesJ tRNA(Ile)-lysidin 91.6 1.6 3.4E-05 35.9 8.9 95 27-163 22-134 (298)
34 COG0299 PurN Folate-dependent 89.1 9.4 0.0002 29.9 10.5 82 27-157 1-87 (200)
35 TIGR02765 crypto_DASH cryptoch 89.1 7.8 0.00017 33.9 11.4 103 67-184 27-129 (429)
36 PRK10660 tilS tRNA(Ile)-lysidi 88.4 4.2 9E-05 35.9 9.2 68 26-132 15-82 (436)
37 PRK10867 signal recognition pa 88.3 12 0.00025 33.1 11.8 94 29-166 104-200 (433)
38 PF00448 SRP54: SRP54-type pro 88.0 11 0.00024 29.4 11.1 112 29-186 5-120 (196)
39 PF00731 AIRC: AIR carboxylase 87.6 4.4 9.5E-05 30.4 7.6 71 113-191 15-89 (150)
40 PRK13820 argininosuccinate syn 87.5 15 0.00032 32.1 11.8 36 27-77 3-39 (394)
41 PRK14665 mnmA tRNA-specific 2- 86.7 18 0.00039 31.1 11.9 91 25-159 4-123 (360)
42 TIGR00268 conserved hypothetic 86.5 7 0.00015 31.6 8.9 88 26-159 12-117 (252)
43 PRK05253 sulfate adenylyltrans 86.1 6.7 0.00014 32.9 8.7 94 26-161 27-139 (301)
44 TIGR03556 photolyase_8HDF deox 86.0 11 0.00023 33.6 10.5 97 66-183 26-122 (471)
45 cd01713 PAPS_reductase This do 84.7 13 0.00028 27.2 9.1 37 28-77 1-37 (173)
46 COG0541 Ffh Signal recognition 84.1 21 0.00046 31.5 11.0 114 28-187 103-220 (451)
47 PRK07313 phosphopantothenoylcy 84.0 9.9 0.00021 29.3 8.3 27 26-52 1-27 (182)
48 PRK14664 tRNA-specific 2-thiou 82.3 30 0.00065 29.8 11.3 22 139-160 98-119 (362)
49 cd01990 Alpha_ANH_like_I This 82.1 14 0.0003 28.5 8.6 86 29-159 1-105 (202)
50 TIGR00959 ffh signal recogniti 81.9 36 0.00078 30.0 12.0 94 28-165 102-198 (428)
51 TIGR01425 SRP54_euk signal rec 81.4 32 0.0007 30.3 11.3 98 29-171 104-204 (429)
52 PF02601 Exonuc_VII_L: Exonucl 80.9 7.4 0.00016 32.5 7.1 54 135-188 53-115 (319)
53 PLN02948 phosphoribosylaminoim 78.3 12 0.00025 34.3 7.9 70 113-190 425-498 (577)
54 cd01714 ETF_beta The electron 77.6 32 0.00069 26.9 10.1 34 30-75 28-61 (202)
55 cd02067 B12-binding B12 bindin 77.4 17 0.00036 25.5 7.1 46 116-162 18-63 (119)
56 PRK06027 purU formyltetrahydro 76.7 39 0.00085 28.0 10.0 40 120-159 132-175 (286)
57 COG0036 Rpe Pentose-5-phosphat 76.6 31 0.00067 27.6 8.9 61 113-175 97-157 (220)
58 COG1927 Mtd Coenzyme F420-depe 76.4 23 0.0005 28.2 7.9 68 120-191 26-98 (277)
59 PLN00200 argininosuccinate syn 76.2 53 0.0012 28.8 12.6 36 27-77 6-41 (404)
60 PRK08185 hypothetical protein; 76.1 12 0.00026 31.0 6.8 73 117-189 4-77 (283)
61 COG1606 ATP-utilizing enzymes 75.8 43 0.00093 27.5 9.7 88 26-158 17-122 (269)
62 TIGR02039 CysD sulfate adenyly 75.4 36 0.00077 28.5 9.4 40 27-78 20-59 (294)
63 PRK13982 bifunctional SbtC-lik 75.4 26 0.00056 31.4 9.0 27 26-52 70-96 (475)
64 cd08550 GlyDH-like Glycerol_de 75.0 26 0.00056 29.7 8.8 69 113-189 37-110 (349)
65 PF02844 GARS_N: Phosphoribosy 75.0 3 6.4E-05 29.1 2.5 43 135-184 48-90 (100)
66 TIGR00853 pts-lac PTS system, 74.8 7.7 0.00017 26.5 4.6 66 113-189 19-84 (95)
67 TIGR02113 coaC_strep phosphopa 74.4 28 0.0006 26.7 8.0 25 27-51 1-25 (177)
68 TIGR02852 spore_dpaB dipicolin 74.4 24 0.00051 27.4 7.7 25 27-51 1-26 (187)
69 KOG0780 Signal recognition par 74.3 57 0.0012 28.7 10.4 96 29-169 105-203 (483)
70 PF03652 UPF0081: Uncharacteri 74.0 13 0.00027 27.3 5.8 64 128-191 28-98 (135)
71 COG1597 LCB5 Sphingosine kinas 73.4 26 0.00056 29.3 8.2 76 108-189 16-92 (301)
72 PRK06801 hypothetical protein; 73.2 21 0.00046 29.7 7.5 75 115-189 7-83 (286)
73 cd05565 PTS_IIB_lactose PTS_II 73.0 8.7 0.00019 26.6 4.5 65 113-188 16-80 (99)
74 TIGR00930 2a30 K-Cl cotranspor 72.9 85 0.0018 30.8 12.5 122 28-188 577-709 (953)
75 KOG1650 Predicted K+/H+-antipo 72.8 21 0.00045 34.0 8.2 42 26-79 614-655 (769)
76 PRK05579 bifunctional phosphop 72.8 32 0.00069 30.0 8.9 27 26-52 6-32 (399)
77 TIGR00655 PurU formyltetrahydr 72.7 46 0.001 27.5 9.4 84 25-159 83-170 (280)
78 COG1184 GCD2 Translation initi 72.7 56 0.0012 27.4 12.9 70 117-193 162-234 (301)
79 PRK09722 allulose-6-phosphate 72.6 38 0.00083 27.2 8.7 50 108-158 150-199 (229)
80 PRK08091 ribulose-phosphate 3- 72.5 41 0.00089 27.0 8.8 48 110-158 162-209 (228)
81 PRK00109 Holliday junction res 72.2 13 0.00028 27.3 5.5 54 137-190 42-99 (138)
82 PRK06806 fructose-bisphosphate 72.0 25 0.00053 29.2 7.7 75 115-189 7-83 (281)
83 PF10087 DUF2325: Uncharacteri 72.0 26 0.00057 23.7 6.7 71 113-189 11-84 (97)
84 PRK13010 purU formyltetrahydro 71.8 57 0.0012 27.1 10.0 84 25-159 92-179 (289)
85 cd01995 ExsB ExsB is a transcr 71.5 39 0.00085 25.1 8.5 23 139-161 66-88 (169)
86 PRK12737 gatY tagatose-bisphos 71.4 21 0.00046 29.6 7.2 75 115-189 7-83 (284)
87 PRK11889 flhF flagellar biosyn 70.9 68 0.0015 28.3 10.3 72 117-188 288-360 (436)
88 PRK00919 GMP synthase subunit 70.8 53 0.0011 27.6 9.4 37 27-78 22-58 (307)
89 PRK08745 ribulose-phosphate 3- 70.7 47 0.001 26.5 8.8 46 112-158 156-201 (223)
90 PRK12738 kbaY tagatose-bisphos 70.5 25 0.00055 29.2 7.4 74 116-189 8-83 (286)
91 PRK12857 fructose-1,6-bisphosp 70.5 24 0.00052 29.3 7.3 75 115-189 7-83 (284)
92 PRK09195 gatY tagatose-bisphos 70.2 22 0.00048 29.5 7.0 74 116-189 8-83 (284)
93 PRK09590 celB cellobiose phosp 69.5 10 0.00022 26.5 4.2 68 113-189 17-84 (104)
94 PF02887 PK_C: Pyruvate kinase 69.4 13 0.00028 26.1 4.9 44 137-189 4-48 (117)
95 PRK11914 diacylglycerol kinase 69.4 31 0.00068 28.5 7.9 70 113-189 27-97 (306)
96 TIGR01858 tag_bisphos_ald clas 69.4 26 0.00056 29.1 7.2 74 116-189 6-81 (282)
97 PRK00286 xseA exodeoxyribonucl 69.1 19 0.0004 31.7 6.7 54 135-188 174-232 (438)
98 cd00946 FBP_aldolase_IIA Class 68.1 29 0.00063 29.7 7.4 77 114-190 4-97 (345)
99 TIGR02069 cyanophycinase cyano 67.9 61 0.0013 26.3 9.0 62 114-177 45-110 (250)
100 TIGR02766 crypt_chrom_pln cryp 67.7 89 0.0019 27.7 12.9 97 68-184 24-120 (475)
101 PF03575 Peptidase_S51: Peptid 67.5 7.4 0.00016 28.9 3.4 63 114-178 2-64 (154)
102 PRK00994 F420-dependent methyl 67.0 38 0.00082 27.5 7.3 67 121-192 27-99 (277)
103 PRK14057 epimerase; Provisiona 66.8 57 0.0012 26.7 8.6 50 109-159 175-224 (254)
104 TIGR00884 guaA_Cterm GMP synth 66.5 67 0.0015 27.0 9.3 37 27-78 17-53 (311)
105 PF00885 DMRL_synthase: 6,7-di 66.3 46 0.001 24.6 7.4 78 108-185 16-104 (144)
106 PRK10674 deoxyribodipyrimidine 66.3 87 0.0019 27.9 10.4 75 67-158 29-105 (472)
107 cd02070 corrinoid_protein_B12- 65.8 34 0.00074 26.5 7.0 67 117-186 102-171 (201)
108 cd00952 CHBPH_aldolase Trans-o 65.6 79 0.0017 26.4 9.7 78 112-190 65-145 (309)
109 TIGR00032 argG argininosuccina 65.4 84 0.0018 27.4 9.9 23 137-159 94-116 (394)
110 cd01712 ThiI ThiI is required 65.2 56 0.0012 24.5 10.0 35 28-78 1-35 (177)
111 cd00954 NAL N-Acetylneuraminic 65.2 71 0.0015 26.3 9.1 52 139-190 86-138 (288)
112 PF04244 DPRP: Deoxyribodipyri 64.8 45 0.00098 26.6 7.6 79 107-190 44-127 (224)
113 cd00947 TBP_aldolase_IIB Tagat 64.5 31 0.00067 28.6 6.7 74 117-190 4-79 (276)
114 cd05564 PTS_IIB_chitobiose_lic 64.4 18 0.00039 24.6 4.6 66 113-189 15-80 (96)
115 cd01985 ETF The electron trans 64.3 60 0.0013 24.5 12.7 23 138-160 80-102 (181)
116 cd03557 L-arabinose_isomerase 64.3 65 0.0014 28.9 9.2 72 113-190 24-101 (484)
117 cd02071 MM_CoA_mut_B12_BD meth 64.1 47 0.001 23.5 7.0 59 117-178 19-77 (122)
118 COG1646 Predicted phosphate-bi 64.0 54 0.0012 26.5 7.7 54 136-191 28-81 (240)
119 TIGR00237 xseA exodeoxyribonuc 63.8 31 0.00068 30.4 7.1 55 135-189 168-228 (432)
120 COG1066 Sms Predicted ATP-depe 63.2 73 0.0016 28.2 8.9 112 28-189 95-219 (456)
121 cd00408 DHDPS-like Dihydrodipi 62.8 81 0.0018 25.6 9.1 79 111-190 53-133 (281)
122 TIGR00521 coaBC_dfp phosphopan 62.8 68 0.0015 27.9 8.8 26 26-51 3-28 (390)
123 PRK04147 N-acetylneuraminate l 62.7 68 0.0015 26.4 8.6 76 113-189 62-139 (293)
124 PRK07998 gatY putative fructos 62.7 35 0.00075 28.4 6.8 73 116-188 8-82 (283)
125 PRK09197 fructose-bisphosphate 62.6 46 0.00099 28.6 7.5 75 116-190 11-102 (350)
126 COG0191 Fba Fructose/tagatose 62.3 38 0.00083 28.2 6.8 75 115-189 7-84 (286)
127 PRK13059 putative lipid kinase 61.5 82 0.0018 26.0 8.9 70 113-189 20-91 (295)
128 cd07044 CofD_YvcK Family of Co 61.1 16 0.00036 30.7 4.6 52 136-189 163-215 (309)
129 cd01997 GMP_synthase_C The C-t 61.1 81 0.0017 26.3 8.7 35 28-77 1-35 (295)
130 TIGR00683 nanA N-acetylneurami 60.9 94 0.002 25.6 9.3 77 113-190 59-138 (290)
131 PRK13011 formyltetrahydrofolat 60.8 97 0.0021 25.7 9.5 84 25-159 88-175 (286)
132 PRK13054 lipid kinase; Reviewe 60.7 82 0.0018 26.0 8.8 70 114-189 20-93 (300)
133 cd01994 Alpha_ANH_like_IV This 60.6 77 0.0017 24.6 9.4 21 28-48 1-21 (194)
134 PRK04527 argininosuccinate syn 60.4 1.2E+02 0.0026 26.6 10.2 24 137-160 97-120 (400)
135 PF04459 DUF512: Protein of un 59.9 78 0.0017 24.9 8.0 81 110-190 108-203 (204)
136 TIGR00167 cbbA ketose-bisphosp 59.9 54 0.0012 27.3 7.4 75 115-189 7-86 (288)
137 TIGR01859 fruc_bis_ald_ fructo 59.9 48 0.001 27.4 7.2 73 116-188 6-82 (282)
138 TIGR02313 HpaI-NOT-DapA 2,4-di 59.7 90 0.0019 25.8 8.8 76 113-189 58-136 (294)
139 PRK02261 methylaspartate mutas 59.5 67 0.0014 23.5 7.5 67 117-186 23-91 (137)
140 PRK03170 dihydrodipicolinate s 59.4 96 0.0021 25.4 9.0 76 113-189 59-136 (292)
141 COG2379 GckA Putative glycerat 59.2 1.2E+02 0.0027 26.5 10.0 63 127-189 247-316 (422)
142 TIGR00250 RNAse_H_YqgF RNAse H 59.0 33 0.00072 24.8 5.4 55 136-190 35-93 (130)
143 PRK13055 putative lipid kinase 58.8 1E+02 0.0022 25.9 9.2 73 111-189 19-94 (334)
144 COG0036 Rpe Pentose-5-phosphat 58.7 93 0.002 24.9 8.3 45 112-158 155-199 (220)
145 cd00950 DHDPS Dihydrodipicolin 58.4 81 0.0017 25.7 8.3 77 112-189 57-135 (284)
146 PF13167 GTP-bdg_N: GTP-bindin 58.4 58 0.0012 22.4 6.7 48 110-157 6-65 (95)
147 COG3510 CmcI Cephalosporin hyd 58.3 21 0.00045 28.2 4.4 49 2-52 121-169 (237)
148 PF01008 IF-2B: Initiation fac 58.1 36 0.00079 27.8 6.2 64 119-189 152-219 (282)
149 PF02310 B12-binding: B12 bind 58.0 59 0.0013 22.4 8.1 70 114-186 17-86 (121)
150 TIGR02855 spore_yabG sporulati 57.6 41 0.00089 27.8 6.2 48 112-159 115-163 (283)
151 PRK12563 sulfate adenylyltrans 57.6 1E+02 0.0022 26.1 8.7 40 26-77 37-76 (312)
152 PRK13337 putative lipid kinase 57.5 1.1E+02 0.0024 25.3 9.3 71 113-189 20-92 (304)
153 PRK09423 gldA glycerol dehydro 57.4 97 0.0021 26.4 8.9 69 113-189 44-117 (366)
154 PLN02331 phosphoribosylglycina 57.1 94 0.002 24.5 10.2 42 118-159 42-88 (207)
155 TIGR01520 FruBisAldo_II_A fruc 57.1 72 0.0016 27.5 7.8 78 114-191 15-110 (357)
156 TIGR00273 iron-sulfur cluster- 56.5 50 0.0011 29.2 7.0 60 98-157 37-96 (432)
157 PF01116 F_bP_aldolase: Fructo 56.4 20 0.00042 29.9 4.3 73 114-186 5-79 (287)
158 PRK11070 ssDNA exonuclease Rec 56.2 1.4E+02 0.0031 27.4 10.1 37 124-160 126-162 (575)
159 cd07186 CofD_like LPPG:FO 2-ph 56.2 48 0.001 27.9 6.5 51 136-188 172-223 (303)
160 KOG1467 Translation initiation 55.9 1.6E+02 0.0034 26.6 10.4 69 117-193 402-474 (556)
161 PRK05703 flhF flagellar biosyn 55.5 1.4E+02 0.0031 26.2 9.7 110 31-188 227-340 (424)
162 TIGR01521 FruBisAldo_II_B fruc 55.4 65 0.0014 27.6 7.3 74 116-189 6-82 (347)
163 PRK13399 fructose-1,6-bisphosp 55.2 65 0.0014 27.6 7.3 75 115-189 7-84 (347)
164 TIGR01769 GGGP geranylgeranylg 55.1 39 0.00084 26.7 5.6 49 141-191 16-64 (205)
165 COG0415 PhrB Deoxyribodipyrimi 55.0 1.3E+02 0.0027 27.0 9.2 79 105-187 48-126 (461)
166 cd00951 KDGDH 5-dehydro-4-deox 54.9 1.1E+02 0.0023 25.2 8.5 73 113-187 58-132 (289)
167 cd08173 Gro1PDH Sn-glycerol-1- 54.7 81 0.0018 26.6 7.9 68 113-189 40-111 (339)
168 PF05582 Peptidase_U57: YabG p 54.7 43 0.00093 27.8 5.9 48 112-159 116-164 (287)
169 PF07355 GRDB: Glycine/sarcosi 54.7 59 0.0013 27.9 6.9 66 119-186 42-117 (349)
170 PRK06029 3-octaprenyl-4-hydrox 54.4 28 0.00061 26.9 4.6 26 27-52 2-27 (185)
171 COG0452 Dfp Phosphopantothenoy 54.3 73 0.0016 27.7 7.6 34 27-73 5-38 (392)
172 TIGR01826 CofD_related conserv 54.2 32 0.00069 29.0 5.2 52 136-190 161-214 (310)
173 TIGR00674 dapA dihydrodipicoli 54.2 1.1E+02 0.0024 25.0 8.5 76 113-189 56-133 (285)
174 PRK15424 propionate catabolism 54.1 76 0.0017 28.9 7.9 66 113-190 25-93 (538)
175 PRK07315 fructose-bisphosphate 53.6 69 0.0015 26.7 7.1 74 115-188 7-85 (293)
176 PRK02929 L-arabinose isomerase 53.6 86 0.0019 28.3 8.1 73 109-188 26-105 (499)
177 COG0420 SbcD DNA repair exonuc 53.0 34 0.00075 29.3 5.5 26 108-135 23-48 (390)
178 PRK08335 translation initiatio 52.4 89 0.0019 25.8 7.5 66 118-191 153-222 (275)
179 cd08171 GlyDH-like2 Glycerol d 52.3 87 0.0019 26.5 7.7 68 114-189 38-111 (345)
180 PRK08610 fructose-bisphosphate 52.2 78 0.0017 26.3 7.2 74 116-189 8-86 (286)
181 COG1570 XseA Exonuclease VII, 52.0 65 0.0014 28.6 6.9 54 135-189 174-234 (440)
182 cd02065 B12-binding_like B12 b 51.9 77 0.0017 21.9 6.7 68 115-186 17-86 (125)
183 PF01596 Methyltransf_3: O-met 51.7 51 0.0011 25.9 5.8 46 114-159 83-131 (205)
184 PRK08392 hypothetical protein; 51.5 70 0.0015 25.0 6.6 67 112-182 137-205 (215)
185 smart00851 MGS MGS-like domain 51.1 49 0.0011 21.9 4.9 65 119-184 24-89 (90)
186 cd00532 MGS-like MGS-like doma 51.0 81 0.0018 21.9 6.4 67 119-185 36-104 (112)
187 TIGR03249 KdgD 5-dehydro-4-deo 50.8 1.3E+02 0.0027 24.9 8.3 73 113-187 63-137 (296)
188 PRK00143 mnmA tRNA-specific 2- 50.8 1.6E+02 0.0034 25.1 10.0 23 138-160 105-127 (346)
189 PF01933 UPF0052: Uncharacteri 50.8 27 0.00059 29.2 4.3 53 137-191 173-226 (300)
190 KOG3180 Electron transfer flav 50.3 86 0.0019 24.8 6.6 24 136-159 101-124 (254)
191 PRK06372 translation initiatio 50.2 93 0.002 25.4 7.2 67 117-191 126-196 (253)
192 PRK08745 ribulose-phosphate 3- 50.0 90 0.0019 24.9 7.0 61 113-175 98-158 (223)
193 PRK00771 signal recognition pa 49.8 1.9E+02 0.004 25.7 11.5 48 117-166 142-192 (437)
194 PLN02858 fructose-bisphosphate 49.7 64 0.0014 32.9 7.3 94 96-189 1084-1178(1378)
195 PRK05720 mtnA methylthioribose 49.6 83 0.0018 26.9 7.1 68 118-191 199-270 (344)
196 KOG0781 Signal recognition par 49.4 2.1E+02 0.0045 26.1 11.1 51 136-186 453-503 (587)
197 PLN02285 methionyl-tRNA formyl 49.3 1.4E+02 0.0029 25.4 8.4 43 117-159 60-103 (334)
198 PRK10481 hypothetical protein; 49.1 1.4E+02 0.003 24.0 8.1 60 119-185 147-211 (224)
199 TIGR01501 MthylAspMutase methy 49.1 49 0.0011 24.2 5.0 42 117-159 21-62 (134)
200 cd00453 FTBP_aldolase_II Fruct 49.1 75 0.0016 27.2 6.6 73 117-189 4-94 (340)
201 PRK08535 translation initiatio 49.0 78 0.0017 26.5 6.8 64 118-189 164-231 (310)
202 TIGR00524 eIF-2B_rel eIF-2B al 48.9 66 0.0014 26.9 6.4 67 118-190 171-241 (303)
203 TIGR00342 thiazole biosynthesi 48.9 1.7E+02 0.0038 25.1 10.6 36 26-77 172-207 (371)
204 PRK07709 fructose-bisphosphate 48.8 1.1E+02 0.0023 25.5 7.4 75 115-189 7-86 (285)
205 TIGR03702 lip_kinase_YegS lipi 48.7 1.5E+02 0.0033 24.3 8.8 68 116-189 18-89 (293)
206 TIGR00640 acid_CoA_mut_C methy 48.6 64 0.0014 23.4 5.5 58 117-177 22-79 (132)
207 PF00834 Ribul_P_3_epim: Ribul 48.5 53 0.0011 25.7 5.4 49 108-157 147-195 (201)
208 PF12147 Methyltransf_20: Puta 48.5 77 0.0017 26.7 6.5 121 34-155 44-166 (311)
209 TIGR02329 propionate_PrpR prop 48.3 1.5E+02 0.0032 27.0 8.8 59 120-190 22-83 (526)
210 TIGR00511 ribulose_e2b2 ribose 48.3 82 0.0018 26.3 6.8 64 118-189 159-226 (301)
211 PRK13398 3-deoxy-7-phosphohept 48.1 1.5E+02 0.0033 24.2 12.2 94 28-161 27-122 (266)
212 PF01884 PcrB: PcrB family; I 47.9 46 0.001 26.8 5.0 52 136-191 19-70 (230)
213 COG0552 FtsY Signal recognitio 47.7 1.8E+02 0.0039 24.9 11.2 98 28-170 142-242 (340)
214 PRK05835 fructose-bisphosphate 47.7 98 0.0021 26.1 7.1 74 116-189 7-83 (307)
215 COG1058 CinA Predicted nucleot 47.6 1.2E+02 0.0025 24.9 7.4 66 115-185 24-92 (255)
216 cd00578 L-fuc_L-ara-isomerases 47.5 1.4E+02 0.0031 26.2 8.6 77 108-190 19-98 (452)
217 PRK08005 epimerase; Validated 47.5 98 0.0021 24.5 6.8 62 113-176 94-155 (210)
218 PRK00074 guaA GMP synthase; Re 47.4 2E+02 0.0044 25.9 9.6 36 27-77 216-251 (511)
219 cd07187 YvcK_like family of mo 47.3 47 0.001 27.9 5.2 52 136-189 164-216 (308)
220 PRK15411 rcsA colanic acid cap 47.2 1.3E+02 0.0029 23.3 8.4 65 117-188 16-85 (207)
221 cd02072 Glm_B12_BD B12 binding 47.1 56 0.0012 23.7 5.0 39 119-158 21-59 (128)
222 PRK03620 5-dehydro-4-deoxygluc 46.9 1.7E+02 0.0036 24.3 8.5 74 113-188 65-140 (303)
223 TIGR03573 WbuX N-acetyl sugar 46.7 1.8E+02 0.0039 24.7 8.9 23 137-159 148-170 (343)
224 PRK08334 translation initiatio 45.7 94 0.002 26.8 6.8 63 120-188 214-280 (356)
225 PRK07084 fructose-bisphosphate 45.4 99 0.0021 26.2 6.8 75 115-189 13-94 (321)
226 PRK09196 fructose-1,6-bisphosp 45.1 1.1E+02 0.0024 26.3 7.1 74 116-189 8-84 (347)
227 PF01791 DeoC: DeoC/LacD famil 45.1 1.5E+02 0.0032 23.5 7.7 79 107-186 107-199 (236)
228 COG0816 Predicted endonuclease 44.8 75 0.0016 23.5 5.4 53 137-189 41-97 (141)
229 cd01996 Alpha_ANH_like_III Thi 44.7 1.2E+02 0.0026 22.0 9.1 21 28-48 3-23 (154)
230 PRK05772 translation initiatio 44.4 1.5E+02 0.0032 25.7 7.8 64 120-189 222-289 (363)
231 KOG3111 D-ribulose-5-phosphate 44.4 1.6E+02 0.0034 23.3 8.0 56 114-171 101-156 (224)
232 TIGR00147 lipid kinase, YegS/R 44.3 1.7E+02 0.0038 23.8 9.0 72 112-189 19-92 (293)
233 TIGR00512 salvage_mtnA S-methy 44.1 1.1E+02 0.0024 26.1 6.9 65 119-189 200-268 (331)
234 cd00958 DhnA Class I fructose- 44.0 1.6E+02 0.0034 23.2 9.0 72 108-187 105-186 (235)
235 PRK06371 translation initiatio 43.4 94 0.002 26.4 6.4 65 118-188 189-257 (329)
236 TIGR00177 molyb_syn molybdenum 43.3 88 0.0019 22.8 5.7 40 117-156 32-73 (144)
237 PF03162 Y_phosphatase2: Tyros 43.1 78 0.0017 23.9 5.4 70 120-189 27-100 (164)
238 PF03746 LamB_YcsF: LamB/YcsF 42.8 1.8E+02 0.004 23.6 12.7 123 27-184 28-160 (242)
239 PRK11907 bifunctional 2',3'-cy 42.7 1.4E+02 0.0029 28.9 8.0 43 140-187 192-234 (814)
240 PRK13057 putative lipid kinase 42.7 1.3E+02 0.0027 24.6 7.1 68 114-189 15-83 (287)
241 PF03358 FMN_red: NADPH-depend 42.6 1.1E+02 0.0023 22.1 6.1 64 110-175 16-96 (152)
242 PF01261 AP_endonuc_2: Xylose 42.1 1.4E+02 0.0031 22.2 8.1 81 40-152 70-158 (213)
243 PRK06731 flhF flagellar biosyn 42.0 1E+02 0.0022 25.4 6.3 71 117-188 122-194 (270)
244 PF00072 Response_reg: Respons 41.9 1E+02 0.0022 20.3 6.9 66 116-189 13-80 (112)
245 COG0426 FpaA Uncharacterized f 41.9 1.9E+02 0.0041 25.3 8.1 45 114-160 264-308 (388)
246 PRK00861 putative lipid kinase 41.3 1.8E+02 0.0039 23.8 7.9 66 116-189 24-90 (300)
247 PRK08091 ribulose-phosphate 3- 41.1 1.5E+02 0.0033 23.8 7.0 61 113-175 104-166 (228)
248 PF13607 Succ_CoA_lig: Succiny 40.9 86 0.0019 23.0 5.2 73 115-191 15-92 (138)
249 cd02069 methionine_synthase_B1 40.8 1.3E+02 0.0028 23.7 6.6 67 117-186 108-175 (213)
250 cd01986 Alpha_ANH_like Adenine 40.5 1.1E+02 0.0025 20.5 8.6 34 29-78 1-34 (103)
251 TIGR02370 pyl_corrinoid methyl 40.5 1.7E+02 0.0037 22.6 7.2 59 117-178 104-162 (197)
252 COG0329 DapA Dihydrodipicolina 40.3 2.2E+02 0.0047 23.7 8.5 55 137-191 87-141 (299)
253 COG1139 Uncharacterized conser 40.0 1.4E+02 0.0029 26.6 6.9 91 99-189 52-154 (459)
254 COG3340 PepE Peptidase E [Amin 39.9 2E+02 0.0042 23.1 10.0 46 111-158 48-93 (224)
255 TIGR00583 mre11 DNA repair pro 39.6 86 0.0019 27.4 5.8 13 179-191 109-121 (405)
256 cd08175 G1PDH Glycerol-1-phosp 39.4 1.8E+02 0.0038 24.6 7.6 66 115-189 40-113 (348)
257 cd01424 MGS_CPS_II Methylglyox 38.9 1.3E+02 0.0027 20.6 6.8 64 119-185 37-100 (110)
258 PHA03368 DNA packaging termina 38.9 3.5E+02 0.0076 25.7 10.4 112 25-157 576-693 (738)
259 PRK11106 queuosine biosynthesi 38.8 2E+02 0.0044 23.0 9.3 35 27-77 2-36 (231)
260 cd03364 TOPRIM_DnaG_primases T 38.6 1.1E+02 0.0023 19.6 5.1 27 26-52 43-69 (79)
261 PF14582 Metallophos_3: Metall 38.5 73 0.0016 25.9 4.7 19 173-191 82-100 (255)
262 PRK10653 D-ribose transporter 38.4 2E+02 0.0043 23.1 7.7 71 112-188 43-115 (295)
263 PRK00509 argininosuccinate syn 38.1 2.8E+02 0.006 24.3 12.0 36 27-77 3-38 (399)
264 PRK06806 fructose-bisphosphate 37.9 2.3E+02 0.0051 23.4 10.1 76 112-187 115-207 (281)
265 cd06361 PBP1_GPC6A_like Ligand 37.7 2.7E+02 0.0058 24.0 11.4 33 128-160 235-269 (403)
266 COG4126 Hydantoin racemase [Am 37.6 54 0.0012 26.3 3.9 39 138-184 163-201 (230)
267 PRK09722 allulose-6-phosphate 37.5 1.6E+02 0.0034 23.6 6.6 59 114-174 97-155 (229)
268 TIGR00347 bioD dethiobiotin sy 37.3 1E+02 0.0022 22.6 5.3 13 175-187 124-136 (166)
269 cd03145 GAT1_cyanophycinase Ty 37.2 2E+02 0.0044 22.5 10.0 63 114-178 46-112 (217)
270 PRK05588 histidinol-phosphatas 37.0 2.2E+02 0.0047 22.8 9.3 80 111-190 165-250 (255)
271 TIGR00696 wecB_tagA_cpsF bacte 36.6 1.6E+02 0.0034 22.6 6.3 23 138-160 89-111 (177)
272 smart00852 MoCF_biosynth Proba 36.6 1.4E+02 0.003 21.3 5.7 40 117-156 23-64 (135)
273 cd05569 PTS_IIB_fructose PTS_I 36.5 70 0.0015 21.7 3.9 46 114-160 18-64 (96)
274 cd08170 GlyDH Glycerol dehydro 36.5 2.6E+02 0.0057 23.5 8.7 71 112-189 36-110 (351)
275 PF13662 Toprim_4: Toprim doma 36.4 66 0.0014 20.8 3.7 27 26-52 46-72 (81)
276 PRK00843 egsA NAD(P)-dependent 36.2 1.9E+02 0.0041 24.5 7.3 65 116-189 52-120 (350)
277 PF02441 Flavoprotein: Flavopr 36.1 82 0.0018 22.4 4.4 26 27-52 1-26 (129)
278 TIGR00420 trmU tRNA (5-methyla 36.1 2.8E+02 0.006 23.7 10.9 21 139-159 106-127 (352)
279 TIGR02127 pyrF_sub2 orotidine 36.0 2.4E+02 0.0052 23.0 9.5 27 26-52 13-49 (261)
280 TIGR01917 gly_red_sel_B glycin 36.0 1.9E+02 0.004 25.6 7.2 61 125-186 43-113 (431)
281 PRK14974 cell division protein 36.0 2.7E+02 0.0059 23.7 11.5 52 116-167 186-240 (336)
282 PRK08883 ribulose-phosphate 3- 35.7 1.9E+02 0.0041 22.9 6.8 57 113-171 94-150 (220)
283 TIGR01859 fruc_bis_ald_ fructo 35.4 2.6E+02 0.0055 23.1 9.0 75 113-187 116-207 (282)
284 PF02878 PGM_PMM_I: Phosphoglu 35.1 1.3E+02 0.0029 21.5 5.5 40 26-77 40-79 (137)
285 PRK13606 LPPG:FO 2-phospho-L-l 34.9 1.4E+02 0.0031 25.1 6.2 48 136-188 174-223 (303)
286 PF02142 MGS: MGS-like domain 34.8 38 0.00081 22.8 2.3 66 118-184 23-94 (95)
287 COG0391 Uncharacterized conser 34.7 96 0.0021 26.3 5.1 51 136-189 178-230 (323)
288 PRK06850 hypothetical protein; 34.7 3.5E+02 0.0075 24.6 8.9 77 27-133 35-111 (507)
289 cd01538 PBP1_ABC_xylose_bindin 34.6 2.4E+02 0.0052 22.5 7.9 71 112-188 16-88 (288)
290 TIGR03151 enACPred_II putative 34.5 2.2E+02 0.0048 23.8 7.3 66 117-186 101-167 (307)
291 PF02610 Arabinose_Isome: L-ar 34.3 1.3E+02 0.0028 25.9 5.9 45 138-188 60-105 (359)
292 cd01715 ETF_alpha The electron 34.3 1.9E+02 0.0042 21.4 10.9 25 137-161 71-95 (168)
293 COG2185 Sbm Methylmalonyl-CoA 34.2 2E+02 0.0042 21.4 6.2 65 117-184 32-96 (143)
294 PRK06455 riboflavin synthase; 34.1 2E+02 0.0044 21.6 7.4 76 113-188 16-99 (155)
295 TIGR00619 sbcd exonuclease Sbc 34.1 93 0.002 25.1 4.9 24 111-136 25-48 (253)
296 TIGR00289 conserved hypothetic 34.0 2.4E+02 0.0053 22.5 11.5 89 28-157 2-93 (222)
297 TIGR01304 IMP_DH_rel_2 IMP deh 33.8 3.1E+02 0.0067 23.7 8.2 66 115-185 122-193 (369)
298 cd00885 cinA Competence-damage 33.6 1.5E+02 0.0033 22.4 5.8 41 116-156 23-65 (170)
299 COG0434 SgcQ Predicted TIM-bar 33.6 2.2E+02 0.0048 23.2 6.8 49 136-187 164-212 (263)
300 PRK03670 competence damage-ind 33.4 2.6E+02 0.0057 22.7 7.4 41 116-156 24-67 (252)
301 PLN02925 4-hydroxy-3-methylbut 33.3 3.5E+02 0.0077 25.7 8.8 90 98-187 196-305 (733)
302 COG0788 PurU Formyltetrahydrof 33.3 92 0.002 25.8 4.6 64 116-188 129-196 (287)
303 PRK08673 3-deoxy-7-phosphohept 33.2 3E+02 0.0064 23.5 7.9 85 37-161 104-188 (335)
304 PRK08883 ribulose-phosphate 3- 33.0 2.5E+02 0.0054 22.3 8.8 45 113-158 153-197 (220)
305 cd08194 Fe-ADH6 Iron-containin 33.0 2.2E+02 0.0047 24.3 7.3 45 113-157 39-89 (375)
306 COG1691 NCAIR mutase (PurE)-re 32.8 2.7E+02 0.0058 22.6 7.9 68 114-189 133-204 (254)
307 TIGR01918 various_sel_PB selen 32.6 2.2E+02 0.0047 25.2 7.1 61 125-186 43-113 (431)
308 PRK14176 bifunctional 5,10-met 32.5 3E+02 0.0064 23.0 9.4 44 113-156 55-103 (287)
309 KOG1650 Predicted K+/H+-antipo 32.4 4.6E+02 0.0099 25.2 10.5 54 136-189 541-600 (769)
310 PRK08227 autoinducer 2 aldolas 32.3 2.8E+02 0.0062 22.7 10.3 71 108-188 123-200 (264)
311 cd06295 PBP1_CelR Ligand bindi 32.3 2.5E+02 0.0053 22.0 9.1 68 113-188 28-95 (275)
312 PF00701 DHDPS: Dihydrodipicol 32.2 2.8E+02 0.0061 22.6 9.7 76 113-189 59-136 (289)
313 cd07766 DHQ_Fe-ADH Dehydroquin 31.9 2.5E+02 0.0053 23.4 7.3 68 113-189 38-113 (332)
314 PF14639 YqgF: Holliday-juncti 31.7 86 0.0019 23.4 4.0 20 138-157 52-71 (150)
315 PHA02546 47 endonuclease subun 31.7 1.1E+02 0.0025 25.8 5.2 23 111-135 25-47 (340)
316 PF01993 MTD: methylene-5,6,7, 31.6 1.7E+02 0.0036 24.0 5.8 48 139-190 49-96 (276)
317 COG0107 HisF Imidazoleglycerol 31.5 1E+02 0.0022 25.0 4.5 60 125-185 20-79 (256)
318 cd00758 MoCF_BD MoCF_BD: molyb 31.3 1.8E+02 0.0039 20.7 5.6 40 117-156 24-65 (133)
319 PRK07328 histidinol-phosphatas 31.3 2.8E+02 0.0061 22.4 8.4 77 112-189 177-261 (269)
320 PRK03767 NAD(P)H:quinone oxido 31.3 2.4E+02 0.0051 21.7 6.6 13 148-160 68-80 (200)
321 PF03129 HGTP_anticodon: Antic 31.3 1.5E+02 0.0033 19.3 5.4 48 109-157 13-61 (94)
322 PRK12726 flagellar biosynthesi 31.2 3.7E+02 0.008 23.7 10.0 50 116-165 252-301 (407)
323 PLN02828 formyltetrahydrofolat 31.0 3E+02 0.0066 22.6 10.6 87 25-159 69-157 (268)
324 cd06315 PBP1_ABC_sugar_binding 30.9 2.7E+02 0.0059 22.1 7.4 71 112-188 17-89 (280)
325 PF00215 OMPdecase: Orotidine 30.8 2.1E+02 0.0046 22.4 6.5 45 113-157 43-93 (226)
326 PHA02031 putative DnaG-like pr 30.8 2E+02 0.0043 23.8 6.2 36 27-74 207-242 (266)
327 cd00886 MogA_MoaB MogA_MoaB fa 30.8 1.7E+02 0.0038 21.4 5.6 40 117-156 25-68 (152)
328 PRK12858 tagatose 1,6-diphosph 30.7 3.4E+02 0.0074 23.2 11.1 83 106-189 137-250 (340)
329 PRK03673 hypothetical protein; 30.7 3.2E+02 0.0069 23.9 7.9 66 116-185 25-92 (396)
330 cd01539 PBP1_GGBP Periplasmic 30.6 2.9E+02 0.0063 22.3 7.7 69 114-188 18-90 (303)
331 cd06318 PBP1_ABC_sugar_binding 30.4 2.7E+02 0.0058 21.8 8.6 71 112-188 16-88 (282)
332 TIGR02260 benz_CoA_red_B benzo 30.0 1.4E+02 0.0031 26.1 5.6 53 137-189 338-390 (413)
333 PRK12361 hypothetical protein; 29.9 3.3E+02 0.0072 24.6 8.2 70 112-189 260-330 (547)
334 PRK05282 (alpha)-aspartyl dipe 29.9 2.1E+02 0.0046 23.0 6.2 58 114-177 50-107 (233)
335 PRK09271 flavodoxin; Provision 29.9 1.8E+02 0.0039 21.5 5.6 10 149-158 51-60 (160)
336 TIGR01755 flav_wrbA NAD(P)H:qu 29.8 2.6E+02 0.0056 21.5 7.8 13 148-160 67-79 (197)
337 PLN02476 O-methyltransferase 29.7 1.8E+02 0.0038 24.1 5.9 47 113-159 155-204 (278)
338 cd06319 PBP1_ABC_sugar_binding 29.7 2.7E+02 0.0059 21.7 8.1 71 112-188 16-88 (277)
339 TIGR00290 MJ0570_dom MJ0570-re 29.7 2.9E+02 0.0063 22.0 11.5 22 28-49 2-23 (223)
340 cd08199 EEVS 2-epi-5-epi-valio 29.6 3.5E+02 0.0076 23.0 7.9 67 115-189 43-123 (354)
341 PRK07329 hypothetical protein; 29.5 2.9E+02 0.0064 22.0 7.7 72 112-184 165-243 (246)
342 COG1440 CelA Phosphotransferas 29.5 1.7E+02 0.0037 20.4 4.8 61 117-188 21-81 (102)
343 TIGR00646 MG010 DNA primase-re 29.4 3E+02 0.0064 22.0 8.0 27 26-52 154-180 (218)
344 COG2102 Predicted ATPases of P 29.3 3E+02 0.0065 22.1 10.8 37 121-157 55-94 (223)
345 cd00858 GlyRS_anticodon GlyRS 29.3 2E+02 0.0044 20.1 6.1 41 116-158 46-87 (121)
346 PF07302 AroM: AroM protein; 29.3 3E+02 0.0065 22.0 7.9 55 125-186 149-208 (221)
347 PRK08417 dihydroorotase; Provi 29.2 1.4E+02 0.0031 25.6 5.5 27 39-77 180-206 (386)
348 PRK00125 pyrF orotidine 5'-pho 29.2 3.3E+02 0.0072 22.5 8.2 26 27-52 14-49 (278)
349 PF01729 QRPTase_C: Quinolinat 29.1 1.2E+02 0.0025 23.1 4.4 45 113-158 113-157 (169)
350 PF07476 MAAL_C: Methylasparta 29.0 3.1E+02 0.0068 22.2 10.6 65 108-177 119-184 (248)
351 COG1504 Uncharacterized conser 28.9 1.5E+02 0.0033 21.1 4.5 39 148-189 60-98 (121)
352 COG0137 ArgG Argininosuccinate 28.8 4E+02 0.0087 23.4 13.3 108 26-164 4-127 (403)
353 PRK08305 spoVFB dipicolinate s 28.5 1.6E+02 0.0036 23.0 5.2 28 25-52 4-32 (196)
354 PRK06247 pyruvate kinase; Prov 28.4 1.7E+02 0.0036 26.4 5.8 45 137-190 357-402 (476)
355 PF01012 ETF: Electron transfe 28.3 2.4E+02 0.0052 20.7 7.4 82 108-189 15-99 (164)
356 PRK11921 metallo-beta-lactamas 28.1 3.9E+02 0.0084 23.0 10.6 36 123-160 276-311 (394)
357 cd06323 PBP1_ribose_binding Pe 28.1 2.8E+02 0.0061 21.4 7.0 70 113-188 17-88 (268)
358 TIGR02667 moaB_proteo molybden 28.0 2.1E+02 0.0046 21.4 5.7 40 117-156 27-70 (163)
359 cd02812 PcrB_like PcrB_like pr 27.9 1.8E+02 0.0039 23.2 5.4 51 138-191 14-65 (219)
360 TIGR00829 FRU PTS system, fruc 27.9 1.1E+02 0.0023 20.4 3.6 46 115-160 18-63 (85)
361 TIGR00364 exsB protein. This p 27.7 2.8E+02 0.006 21.2 10.8 22 139-160 101-122 (201)
362 COG0151 PurD Phosphoribosylami 27.6 61 0.0013 28.5 2.9 24 136-159 50-73 (428)
363 cd01537 PBP1_Repressors_Sugar_ 27.6 2.8E+02 0.006 21.1 9.5 70 113-189 17-88 (264)
364 cd00861 ProRS_anticodon_short 27.6 1.8E+02 0.0038 18.9 5.2 43 115-158 21-64 (94)
365 PRK08057 cobalt-precorrin-6x r 27.5 1.3E+02 0.0028 24.4 4.6 44 142-191 183-226 (248)
366 PF00994 MoCF_biosynth: Probab 27.4 1.9E+02 0.0041 20.8 5.2 41 116-156 21-63 (144)
367 PF04007 DUF354: Protein of un 27.4 2.2E+02 0.0048 24.2 6.2 49 112-163 14-62 (335)
368 PRK14057 epimerase; Provisiona 27.4 3E+02 0.0066 22.5 6.7 62 113-176 111-181 (254)
369 PF00781 DAGK_cat: Diacylglyce 27.2 2.2E+02 0.0049 19.9 6.3 69 115-189 18-91 (130)
370 PRK05265 pyridoxine 5'-phospha 27.1 1.9E+02 0.0042 23.4 5.5 48 110-160 111-158 (239)
371 cd01125 repA Hexameric Replica 27.1 3.1E+02 0.0068 21.5 13.0 57 137-193 99-162 (239)
372 PRK14561 hypothetical protein; 27.0 2.9E+02 0.0064 21.2 9.7 20 27-46 1-20 (194)
373 cd03146 GAT1_Peptidase_E Type 27.0 1.2E+02 0.0027 23.6 4.4 70 113-186 47-120 (212)
374 PF10881 DUF2726: Protein of u 26.7 2.3E+02 0.005 19.9 6.5 54 137-190 45-111 (126)
375 PF01207 Dus: Dihydrouridine s 26.6 3.8E+02 0.0081 22.3 7.5 61 125-185 122-188 (309)
376 COG3969 Predicted phosphoadeno 26.5 1.4E+02 0.003 25.8 4.7 45 22-77 23-67 (407)
377 PRK07945 hypothetical protein; 26.5 2.3E+02 0.0049 24.0 6.2 66 115-182 248-315 (335)
378 PRK00090 bioD dithiobiotin syn 26.4 1.8E+02 0.004 22.4 5.3 18 141-158 125-142 (222)
379 TIGR02699 archaeo_AfpA archaeo 26.3 3E+02 0.0065 21.1 7.6 25 28-52 1-26 (174)
380 PRK09420 cpdB bifunctional 2', 26.3 3.4E+02 0.0074 25.4 7.7 42 140-186 101-142 (649)
381 PLN02958 diacylglycerol kinase 26.3 4.7E+02 0.01 23.4 11.9 69 116-190 134-209 (481)
382 cd06291 PBP1_Qymf_like Ligand 26.3 3.1E+02 0.0067 21.2 8.6 67 112-189 16-84 (265)
383 COG0042 tRNA-dihydrouridine sy 26.3 3E+02 0.0066 23.2 6.9 32 126-157 137-173 (323)
384 PLN02781 Probable caffeoyl-CoA 26.1 2.3E+02 0.005 22.5 5.9 46 113-158 105-153 (234)
385 PLN02589 caffeoyl-CoA O-methyl 26.1 2.2E+02 0.0047 23.1 5.7 46 115-160 118-167 (247)
386 cd06284 PBP1_LacI_like_6 Ligan 26.1 3.1E+02 0.0067 21.1 8.7 67 113-188 17-85 (267)
387 PLN02461 Probable pyruvate kin 26.0 1.8E+02 0.0039 26.4 5.7 42 137-187 383-425 (511)
388 TIGR00330 glpX fructose-1,6-bi 25.6 4.2E+02 0.009 22.5 7.9 41 116-158 168-208 (321)
389 PRK05920 aromatic acid decarbo 25.6 1.8E+02 0.0039 22.9 5.0 26 27-52 4-29 (204)
390 PF00834 Ribul_P_3_epim: Ribul 25.6 1.1E+02 0.0024 23.9 3.9 61 113-175 93-153 (201)
391 PRK12388 fructose-1,6-bisphosp 25.6 4.2E+02 0.0091 22.5 7.8 41 116-158 168-208 (321)
392 TIGR01064 pyruv_kin pyruvate k 25.5 1.8E+02 0.0039 26.0 5.6 45 136-189 360-405 (473)
393 PRK07627 dihydroorotase; Provi 25.4 1.6E+02 0.0035 25.7 5.3 27 39-77 211-237 (425)
394 TIGR00736 nifR3_rel_arch TIM-b 25.3 3.6E+02 0.0078 21.6 7.8 69 116-186 125-197 (231)
395 cd06309 PBP1_YtfQ_like Peripla 25.3 3.3E+02 0.0072 21.3 8.2 72 111-188 15-88 (273)
396 PF02602 HEM4: Uroporphyrinoge 25.2 2E+02 0.0044 22.1 5.4 75 117-191 132-225 (231)
397 TIGR02634 xylF D-xylose ABC tr 25.0 3.7E+02 0.0081 21.7 8.1 70 113-188 16-87 (302)
398 cd08172 GlyDH-like1 Glycerol d 24.9 3.4E+02 0.0075 22.8 7.0 45 137-189 64-109 (347)
399 cd06533 Glyco_transf_WecG_TagA 24.8 1.7E+02 0.0036 22.1 4.6 44 137-186 87-130 (171)
400 PLN02417 dihydrodipicolinate s 24.8 3.9E+02 0.0084 21.8 8.0 62 126-189 71-134 (280)
401 TIGR00064 ftsY signal recognit 24.8 3.9E+02 0.0084 21.8 11.8 50 115-164 117-169 (272)
402 PRK06036 translation initiatio 24.8 3.1E+02 0.0068 23.4 6.6 64 119-188 201-267 (339)
403 PF13500 AAA_26: AAA domain; P 24.6 98 0.0021 23.6 3.4 23 141-163 121-143 (199)
404 cd06281 PBP1_LacI_like_5 Ligan 24.5 3.4E+02 0.0074 21.1 9.4 68 113-187 17-86 (269)
405 cd00840 MPP_Mre11_N Mre11 nucl 24.5 2.6E+02 0.0057 21.2 5.9 25 110-136 26-50 (223)
406 PF12683 DUF3798: Protein of u 24.4 1.8E+02 0.004 24.1 4.9 94 28-160 4-97 (275)
407 cd06317 PBP1_ABC_sugar_binding 24.4 3.4E+02 0.0074 21.1 7.8 70 113-188 18-89 (275)
408 TIGR00639 PurN phosphoribosylg 24.3 3.4E+02 0.0073 20.9 10.6 42 118-159 43-89 (190)
409 cd04724 Tryptophan_synthase_al 24.2 3.7E+02 0.008 21.4 9.1 73 113-185 117-192 (242)
410 PTZ00300 pyruvate kinase; Prov 24.2 2.2E+02 0.0048 25.4 5.8 44 137-189 336-380 (454)
411 PRK07369 dihydroorotase; Provi 24.2 1.6E+02 0.0035 25.7 5.0 28 38-77 211-238 (418)
412 cd08177 MAR Maleylacetate redu 24.2 2.1E+02 0.0045 24.0 5.6 45 138-190 66-111 (337)
413 COG0054 RibH Riboflavin syntha 24.0 3.2E+02 0.0069 20.6 7.6 77 109-185 26-113 (152)
414 smart00732 YqgFc Likely ribonu 24.0 2.2E+02 0.0047 18.6 5.3 53 137-189 39-93 (99)
415 cd06322 PBP1_ABC_sugar_binding 23.8 3.5E+02 0.0076 21.0 8.1 71 112-188 16-88 (267)
416 PF09370 TIM-br_sig_trns: TIM- 23.8 1.3E+02 0.0029 24.8 4.0 70 112-185 2-86 (268)
417 PF07279 DUF1442: Protein of u 23.7 3.8E+02 0.0083 21.4 8.1 45 116-162 84-128 (218)
418 PF02571 CbiJ: Precorrin-6x re 23.7 2.1E+02 0.0045 23.2 5.2 46 141-192 186-231 (249)
419 PRK09206 pyruvate kinase; Prov 23.6 2.1E+02 0.0045 25.7 5.6 45 137-190 358-403 (470)
420 cd06282 PBP1_GntR_like_2 Ligan 23.6 3.5E+02 0.0075 20.8 9.3 68 113-187 17-86 (266)
421 cd06277 PBP1_LacI_like_1 Ligan 23.5 3.6E+02 0.0077 21.0 9.1 67 113-188 20-88 (268)
422 PRK06354 pyruvate kinase; Prov 23.5 2.1E+02 0.0045 26.5 5.6 45 137-190 365-410 (590)
423 PF06506 PrpR_N: Propionate ca 23.4 3.2E+02 0.007 20.5 6.1 50 128-189 10-62 (176)
424 PF11965 DUF3479: Domain of un 23.4 3.4E+02 0.0073 20.6 7.9 46 113-158 47-94 (164)
425 PF13727 CoA_binding_3: CoA-bi 23.0 1.2E+02 0.0026 22.1 3.5 46 138-187 130-175 (175)
426 cd04731 HisF The cyclase subun 23.0 3.8E+02 0.0082 21.1 8.6 51 137-187 150-200 (243)
427 PRK10310 PTS system galactitol 23.0 2.4E+02 0.0053 18.9 4.8 40 114-158 20-59 (94)
428 PF09043 Lys-AminoMut_A: D-Lys 22.9 5.5E+02 0.012 23.0 8.2 43 128-170 149-194 (509)
429 TIGR00114 lumazine-synth 6,7-d 22.8 3.1E+02 0.0068 20.1 8.2 78 108-185 13-101 (138)
430 COG1197 Mfd Transcription-repa 22.8 7.3E+02 0.016 25.1 9.3 50 109-159 655-706 (1139)
431 PRK05826 pyruvate kinase; Prov 22.8 2.3E+02 0.005 25.3 5.7 45 136-189 359-405 (465)
432 PTZ00066 pyruvate kinase; Prov 22.8 2.4E+02 0.0052 25.6 5.8 45 136-189 398-443 (513)
433 PLN02765 pyruvate kinase 22.7 2.2E+02 0.0049 25.9 5.6 42 137-187 396-438 (526)
434 cd06300 PBP1_ABC_sugar_binding 22.7 3.7E+02 0.0081 20.9 8.2 70 113-188 17-93 (272)
435 PRK05406 LamB/YcsF family prot 22.7 4.3E+02 0.0092 21.6 10.8 71 104-184 82-162 (246)
436 PF00763 THF_DHG_CYH: Tetrahyd 22.6 2.1E+02 0.0045 20.1 4.5 48 110-157 43-95 (117)
437 COG1184 GCD2 Translation initi 22.6 4.7E+02 0.01 22.0 10.1 58 128-189 120-179 (301)
438 cd06267 PBP1_LacI_sugar_bindin 22.6 3.5E+02 0.0076 20.5 8.6 69 113-189 17-87 (264)
439 cd01971 Nitrogenase_VnfN_like 22.4 1.6E+02 0.0035 25.7 4.7 28 135-162 102-129 (427)
440 PRK10416 signal recognition pa 22.4 4.7E+02 0.01 22.0 11.7 51 116-166 160-213 (318)
441 PTZ00408 NAD-dependent deacety 22.4 3.9E+02 0.0084 21.5 6.6 52 132-190 154-209 (242)
442 cd06274 PBP1_FruR Ligand bindi 22.4 3.7E+02 0.0081 20.8 9.3 68 113-188 17-86 (264)
443 PLN02762 pyruvate kinase compl 22.4 2.4E+02 0.0051 25.7 5.7 44 137-189 397-441 (509)
444 cd04729 NanE N-acetylmannosami 22.4 3.7E+02 0.0081 20.8 7.9 69 116-187 113-184 (219)
445 COG0482 TrmU Predicted tRNA(5- 22.3 5.1E+02 0.011 22.4 9.6 24 137-160 104-127 (356)
446 PF05679 CHGN: Chondroitin N-a 22.3 5.8E+02 0.013 22.9 10.3 124 28-185 250-378 (499)
447 COG1201 Lhr Lhr-like helicases 22.1 5.2E+02 0.011 25.0 8.1 92 27-156 38-130 (814)
448 PRK00766 hypothetical protein; 22.1 2.6E+02 0.0057 21.9 5.3 58 125-186 42-104 (194)
449 TIGR01743 purR_Bsub pur operon 22.1 3.5E+02 0.0075 22.3 6.2 77 107-192 75-163 (268)
450 cd00288 Pyruvate_Kinase Pyruva 22.0 2.3E+02 0.0049 25.5 5.5 45 137-190 363-408 (480)
451 TIGR03297 Ppyr-DeCO2ase phosph 22.0 1.1E+02 0.0024 26.3 3.4 55 135-189 63-124 (361)
452 TIGR00715 precor6x_red precorr 22.0 2.1E+02 0.0045 23.3 4.9 44 142-191 190-234 (256)
453 cd07406 MPP_CG11883_N Drosophi 21.8 4.2E+02 0.0091 21.2 6.8 42 139-185 61-102 (257)
454 cd06320 PBP1_allose_binding Pe 21.7 3.9E+02 0.0085 20.8 7.6 71 113-189 17-91 (275)
455 cd06313 PBP1_ABC_sugar_binding 21.7 4E+02 0.0088 20.9 7.6 70 113-188 17-88 (272)
456 COG4635 HemG Flavodoxin [Energ 21.6 3.4E+02 0.0074 20.8 5.5 73 110-188 14-89 (175)
457 COG0300 DltE Short-chain dehyd 21.6 4.6E+02 0.01 21.5 9.1 45 112-156 41-91 (265)
458 cd08549 G1PDH_related Glycerol 21.5 4.9E+02 0.011 21.8 7.8 66 115-189 41-113 (332)
459 PRK08649 inosine 5-monophospha 21.4 5.4E+02 0.012 22.2 7.9 41 116-157 122-162 (368)
460 PRK05647 purN phosphoribosylgl 21.3 4E+02 0.0086 20.7 10.0 43 117-159 43-90 (200)
461 cd00860 ThrRS_anticodon ThrRS 21.3 2.3E+02 0.005 18.0 6.1 42 116-158 19-61 (91)
462 PRK15454 ethanol dehydrogenase 21.3 2E+02 0.0043 24.9 4.9 43 113-155 65-112 (395)
463 PRK08576 hypothetical protein; 21.2 5.9E+02 0.013 22.6 9.2 21 28-48 236-256 (438)
464 PRK05370 argininosuccinate syn 21.1 6E+02 0.013 22.7 12.9 28 137-164 110-137 (447)
465 PRK10474 putative PTS system f 21.0 1.5E+02 0.0033 19.7 3.3 44 117-160 6-49 (88)
466 KOG0350 DEAD-box ATP-dependent 21.0 1.9E+02 0.0042 26.3 4.7 95 22-155 179-276 (620)
467 KOG2310 DNA repair exonuclease 20.9 87 0.0019 28.7 2.6 52 136-187 39-96 (646)
468 KOG3076 5'-phosphoribosylglyci 20.8 4.2E+02 0.0092 20.8 7.6 84 27-157 7-95 (206)
469 COG0371 GldA Glycerol dehydrog 20.7 5.6E+02 0.012 22.2 7.4 70 113-189 45-117 (360)
470 cd06296 PBP1_CatR_like Ligand- 20.7 4.1E+02 0.0088 20.6 9.0 68 113-188 17-86 (270)
471 PRK07709 fructose-bisphosphate 20.7 5E+02 0.011 21.6 9.6 75 113-188 119-210 (285)
472 cd02696 MurNAc-LAA N-acetylmur 20.6 3.5E+02 0.0077 19.8 7.0 48 110-157 27-76 (172)
473 COG2876 AroA 3-deoxy-D-arabino 20.6 4.5E+02 0.0098 21.8 6.4 92 29-159 47-138 (286)
474 PLN02404 6,7-dimethyl-8-ribity 20.4 3.6E+02 0.0079 19.9 8.3 78 108-185 20-108 (141)
475 PRK07998 gatY putative fructos 20.2 5.1E+02 0.011 21.5 8.8 72 113-185 116-204 (283)
476 PRK09875 putative hydrolase; P 20.2 3.5E+02 0.0075 22.5 6.0 47 113-159 140-188 (292)
477 COG0512 PabA Anthranilate/para 20.1 4.3E+02 0.0094 20.6 7.2 64 115-186 15-80 (191)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.93 E-value=6.6e-25 Score=163.15 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCh--hhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 26 EMKVMVALDESG--ESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 26 ~~~ILv~~d~s~--~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
|+|||||+|+|+ .+..|+++|..+|+. . ++++++||+++........ . ....+...
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~------------~-~~l~llhv~~~~~~~~~~~--~-------~~~~~~~~ 59 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD------------D-GVIHLLHVLPGSASLSLHR--F-------AADVRRFE 59 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc------------C-CeEEEEEEecCcccccccc--c-------ccchhhHH
Confidence 489999999994 899999999999987 6 5899999998753211100 0 01112344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
+...+..++.++++.+.+...++++++++..|++.+.|++++++.++||||||+++++ +.++++||++++++++++|||
T Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pV 138 (142)
T PRK15456 60 EHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPV 138 (142)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCE
Confidence 5556666777777777766667889999999999999999999999999999999976 777899999999999999999
Q ss_pred EEEC
Q 044973 184 IIVK 187 (197)
Q Consensus 184 lvv~ 187 (197)
|+||
T Consensus 139 LvV~ 142 (142)
T PRK15456 139 LVVR 142 (142)
T ss_pred EEeC
Confidence 9996
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.93 E-value=9.7e-25 Score=162.12 Aligned_cols=141 Identities=17% Similarity=0.270 Sum_probs=110.1
Q ss_pred CCEEEEEeCCChh--hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 26 EMKVMVALDESGE--SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 26 ~~~ILv~~d~s~~--s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
|++||||+|+|+. +..|+++|..+|+. .+++++++||+++........ .. ..... ...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~------------~~~~l~ll~v~~~~~~~~~~~-~~-----~~~~~--~~~ 61 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKI------------DDAEVHFLTVIPSLPYYASLG-LA-----YSAEL--PAM 61 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhc------------cCCeEEEEEEEccCccccccc-cc-----ccccc--hHH
Confidence 3899999999998 57999999999999 899999999998644221110 00 00000 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
+...+..++.++++.+.+...+++++.++..|++.+.|++++++.++||||||+++ +.+.++++||++++|+++++|||
T Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~~vl~~a~cpV 140 (144)
T PRK15005 62 DDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAAAVVRHAECSV 140 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHHHHHHhCCCCE
Confidence 23344555666677776666678889999999999999999999999999999984 56788899999999999999999
Q ss_pred EEEC
Q 044973 184 IIVK 187 (197)
Q Consensus 184 lvv~ 187 (197)
|+||
T Consensus 141 lvVr 144 (144)
T PRK15005 141 LVVR 144 (144)
T ss_pred EEeC
Confidence 9996
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.93 E-value=2.7e-24 Score=160.23 Aligned_cols=141 Identities=27% Similarity=0.412 Sum_probs=118.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+||||+|+|+.+..|++||+.+|+. .+++|+++||.++......... .........+...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~------------~~~~l~ll~v~~~~~~~~~~~~--------~~~~~~~~~~~~~ 60 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT------------KGQTIVLVHVHPPITSIPSSSG--------KLEVASAYKQEED 60 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC------------CCCcEEEEEeccCcccCCCCcc--------chHHHHHHHHHHH
Confidence 4999999999999999999999999 8999999999886432221110 0122344445566
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccc-cHHHHHHhhCC--CCE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLG-SVSDYCAHHVQ--CPI 183 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~g-s~~~~il~~~~--~pV 183 (197)
+..++.++++.+.+...++.++..+..| ++.+.|+++|++.++|+||||+++++.+.++++| |++++++++++ |||
T Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~V 140 (146)
T cd01989 61 KEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTV 140 (146)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceE
Confidence 7778888888888888899999888886 8999999999999999999999999999888887 69999999999 999
Q ss_pred EEECC
Q 044973 184 IIVKP 188 (197)
Q Consensus 184 lvv~~ 188 (197)
|+|++
T Consensus 141 lvv~~ 145 (146)
T cd01989 141 YVVSK 145 (146)
T ss_pred EEEeC
Confidence 99986
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.92 E-value=6.4e-24 Score=158.19 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=107.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
|++||||+|+|+.|..|+++|+.+|+. .+++++++||.++..... +.. . . ...+...+.
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~------------~~a~l~llhV~~~~~~~~-~~~-~---~----~~~~~~~~~ 61 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARH------------NDAHLTLIHIDDGLSELY-PGI-Y---F----PATEDILQL 61 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHH------------hCCeEEEEEEccCcchhc-hhh-h---c----cchHHHHHH
Confidence 499999999999999999999999999 899999999987643211 100 0 0 011223344
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
..+..++.++++...+. ...++.++..|+|.+.|+++|++.++||||||++ ++.+.+++ | ++++++++++||||+
T Consensus 62 ~~~~~~~~l~~~~~~~~--~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLv 136 (142)
T PRK09982 62 LKNKSDNKLYKLTKNIQ--WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLI 136 (142)
T ss_pred HHHHHHHHHHHHHHhcC--CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEE
Confidence 45555566666666554 2457788888999999999999999999999986 77777766 5 999999999999999
Q ss_pred ECCCC
Q 044973 186 VKPPP 190 (197)
Q Consensus 186 v~~~~ 190 (197)
||...
T Consensus 137 v~~~~ 141 (142)
T PRK09982 137 VPFID 141 (142)
T ss_pred ecCCC
Confidence 99754
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.91 E-value=5.4e-23 Score=153.02 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
.|++||||+|+|+.+..|+++|..+|+. .+++++++||..+.... +... . ........+
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~-~~~~-~-------~~~~~~~~~ 60 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARP------------YNAKVSLIHVDVNYSDL-YTGL-I-------DVNLGDMQK 60 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHh------------hCCEEEEEEEccChhhh-hhhh-h-------hcchHHHHH
Confidence 3599999999999999999999999999 89999999995332111 1000 0 000111222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceE-EEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAE-TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~-~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
...+...+.++ ..+...|+.+. .++..|++.+.|+++|++.++||||||+++ +.+ +. +||++++++++++|||
T Consensus 61 ~~~~~~~~~l~---~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~-~~-lgSva~~v~~~a~~pV 134 (144)
T PRK15118 61 RISEETHHALT---ELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW-SK-LMSSARQLINTVHVDM 134 (144)
T ss_pred HHHHHHHHHHH---HHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH-HH-HHHHHHHHHhhCCCCE
Confidence 22223333333 33345677754 455679999999999999999999999996 333 33 5899999999999999
Q ss_pred EEECCCC
Q 044973 184 IIVKPPP 190 (197)
Q Consensus 184 lvv~~~~ 190 (197)
|+||.+.
T Consensus 135 Lvv~~~~ 141 (144)
T PRK15118 135 LIVPLRD 141 (144)
T ss_pred EEecCCc
Confidence 9999753
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.89 E-value=7.2e-22 Score=146.41 Aligned_cols=139 Identities=16% Similarity=0.251 Sum_probs=105.6
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
+|++|||++|+++.+..++++|..+|+. ++++|+++|++++...+.. . .....+...+
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~------------~~a~l~ll~v~~~~~~~~~---~-------~~~~~~~~~~ 59 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARP------------VNGKISLITLASDPEMYNQ---F-------AAPMLEDLRS 59 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHH------------hCCEEEEEEEccCcccchh---h-------hHHHHHHHHH
Confidence 4599999999999999999999999999 8999999999876432110 0 0111223333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCce-EEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 105 AQEENSAALLSRALQICKDKNVKA-ETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~-~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
...++.++.++++. .+.|+.. ...+..|++.+.|++++++.++||||+|+++++.+.+++ |++++++++++|||
T Consensus 60 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pV 134 (142)
T PRK10116 60 VMQEETQSFLDKLI---QDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDV 134 (142)
T ss_pred HHHHHHHHHHHHHH---HhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCE
Confidence 33344444444433 4457655 366678999999999999999999999999998887753 89999999999999
Q ss_pred EEECCCC
Q 044973 184 IIVKPPP 190 (197)
Q Consensus 184 lvv~~~~ 190 (197)
|+||.+.
T Consensus 135 Lvv~~~~ 141 (142)
T PRK10116 135 LLVPLTG 141 (142)
T ss_pred EEEeCCC
Confidence 9999753
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.89 E-value=5.2e-22 Score=144.29 Aligned_cols=138 Identities=32% Similarity=0.509 Sum_probs=104.5
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
+|||||+|+++.+..++++|..+|+. .+++|+++||.+......... ..........
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~------------~~~~i~~l~v~~~~~~~~~~~-----------~~~~~~~~~~ 59 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR------------SGAEITLLHVIPPPPQYSFSA-----------AEDEESEEEA 59 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH------------HTCEEEEEEEEESCHCHHHHH-----------HHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh------------hCCeEEEEEeecccccccccc-----------cccccccccc
Confidence 89999999999999999999999999 899999999999864322110 0000000000
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
..................+......+..|++.+.|++++++.++|+||||+++++.+.++++||++++|+++++||||||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 60 EEEEQARQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred chhhhhhhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 11111111111223334456777888889999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 044973 187 K 187 (197)
Q Consensus 187 ~ 187 (197)
|
T Consensus 140 ~ 140 (140)
T PF00582_consen 140 P 140 (140)
T ss_dssp E
T ss_pred C
Confidence 6
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.89 E-value=7.7e-22 Score=143.81 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=111.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+||||+|+++.+..++++|..+|+. .+++|+++|+.++...... . ......
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~------------~~~~v~ll~v~~~~~~~~~-------------~----~~~~~~ 51 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA------------QNGEIIPLNVIEVPNHSSP-------------S----QLEVNV 51 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc------------CCCeEEEEEEEecCCCCCc-------------c----hhHHHH
Confidence 5999999999999999999999999 8999999999987532110 0 012234
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+..++.++.+.+.+.+.|++++..+.. |++.++|++++++.++|+||||+++++.+.++++||++++++++++|||+++
T Consensus 52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 52 QRARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEe
Confidence 556678888888888889999887765 7899999999999999999999999998888899999999999999999998
Q ss_pred C
Q 044973 187 K 187 (197)
Q Consensus 187 ~ 187 (197)
+
T Consensus 132 ~ 132 (132)
T cd01988 132 K 132 (132)
T ss_pred C
Confidence 6
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.89 E-value=6.2e-22 Score=164.26 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=116.8
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
+|++||||+|+|+.+..|+++|+.+|+. .+++++++|+.++...... .. ..........+
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~------------~~a~l~ll~v~~~~~~~~~-~~-------~~~~~~~~~~~ 61 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQR------------NGGKITAFLPIYDFSYEMT-TL-------LSPDEREAMRQ 61 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHh------------cCCCEEEEEeccCchhhhh-cc-------cchhHHHHHHH
Confidence 3599999999999999999999999999 8999999999865322111 00 00111222333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEe-cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVL-TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~-~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
...+..++.++++...+...|++++..+. .|++.+.|+++|++.++||||+|+++.+.+.+.++||++++|+++++|||
T Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pv 141 (305)
T PRK11175 62 GVISQRTAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPV 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCE
Confidence 34445566777777777777899998776 58999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC
Q 044973 184 IIVKPPP 190 (197)
Q Consensus 184 lvv~~~~ 190 (197)
|+||+..
T Consensus 142 lvv~~~~ 148 (305)
T PRK11175 142 LMVKDQD 148 (305)
T ss_pred EEecccc
Confidence 9999753
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.86 E-value=4.2e-21 Score=139.15 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=102.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+||||+|+++.+.+++++|+.+|+. .+++|+++||.++... ...
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~------------~~~~l~ll~v~~~~~~------------------------~~~ 44 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR------------LKAPWYVVYVETPRLN------------------------RLS 44 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH------------hCCCEEEEEEecCccc------------------------cCC
Confidence 5999999999999999999999999 8999999999876321 011
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIV 186 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv 186 (197)
+..++.++.+.+.+++.++.+.. +..+++.+.|++++++.++|+||||+++++.+.++++||++++|++++ +|||||+
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 45 EAERRRLAEALRLAEELGAEVVT-LPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-EeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 22344566666666666665543 345689999999999999999999999999999999999999999999 9999998
Q ss_pred C
Q 044973 187 K 187 (197)
Q Consensus 187 ~ 187 (197)
+
T Consensus 124 ~ 124 (124)
T cd01987 124 A 124 (124)
T ss_pred C
Confidence 5
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.83 E-value=2.9e-19 Score=148.25 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=105.3
Q ss_pred CCCEEEEEeCCChhh-------HHHHHHHHHHhccccCCCCCCCCCCC-CCEEEEEEeeCCCCCccccCCCCCCccccCc
Q 044973 25 NEMKVMVALDESGES-------FYALKWALDNLFGITGAVTPGTSDRG-AGTVTLVHVQQPFQHFVFPAGPGGAAFYATS 96 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s-------~~al~~a~~la~~~~~~~~~~~~~~~-~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~ 96 (197)
.+++||+|+|+++.+ ..++++|..+|+. . +++++++||++..........+.
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~------------~~~a~l~ll~v~~~~~~~~~~~~~~-------- 210 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ------------LNHAEVHLVNAYPVTPINIAIELPE-------- 210 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh------------CcCCceEEEEEecCcchhccccccc--------
Confidence 358999999998653 6899999999999 7 89999999987643221110000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCce-EEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHH
Q 044973 97 SVEQSIRKAQEENSAALLSRALQICKDKNVKA-ETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~-~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~i 175 (197)
.......+...+...+.+++ ..+..+++. ..++..|++.+.|.+++++.++||||||+++++++.++++||++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v 287 (305)
T PRK11175 211 FDPSVYNDAIRGQHLLAMKA---LRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHV 287 (305)
T ss_pred cchhhHHHHHHHHHHHHHHH---HHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHH
Confidence 01112222222223333333 333446654 46677899999999999999999999999999999999999999999
Q ss_pred HhhCCCCEEEECCCC
Q 044973 176 AHHVQCPIIIVKPPP 190 (197)
Q Consensus 176 l~~~~~pVlvv~~~~ 190 (197)
+++++||||+||+..
T Consensus 288 ~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 288 IDHLNCDLLAIKPDG 302 (305)
T ss_pred HhcCCCCEEEEcCCC
Confidence 999999999998754
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.82 E-value=1e-18 Score=125.69 Aligned_cols=130 Identities=38% Similarity=0.579 Sum_probs=111.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+||||+|+++.+..++++|..+|+. .+++++++||.++...... ...+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~------------~~~~i~~l~v~~~~~~~~~-----------------~~~~~~~ 51 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR------------LGAELVLLHVVDPPPSSAA-----------------ELAELLE 51 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEecCCCCcch-----------------hHHHHHH
Confidence 5899999999999999999999999 8999999999876432110 2234445
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
...++.++++...+...+++++..+..|++.++|.+++++.++|+||+|+++++.+.+.++|+++++++++++||||++
T Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 52 EEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 5666778888877777789999988899999999999999999999999999988888899999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-17 Score=123.78 Aligned_cols=146 Identities=29% Similarity=0.394 Sum_probs=119.7
Q ss_pred CCEEEEEeC-CChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 26 EMKVMVALD-ESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 26 ~~~ILv~~d-~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
+++||+++| +++.+..+++.+..++.. .+..+.+++|.+............. .........
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~ 66 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR------------LGAPLILLVVIDPLEPTALVSVALA------DAPIPLSEE 66 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh------------cCCeEEEEEEecccccccccccccc------cchhhhhHH
Confidence 489999999 999999999999999999 8999999999887653322221110 000222334
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCc-eEEEEecCCh-HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCC
Q 044973 105 AQEENSAALLSRALQICKDKNVK-AETLVLTGDP-KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~-~~~~v~~g~~-~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~p 182 (197)
.......+.++.+...+...++. ++..+..|++ .+.|+.++++.++|+||||+++++.+.++++||++++++++++||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~p 146 (154)
T COG0589 67 ELEEEAEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCP 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCC
Confidence 44566677888888888888888 5888999998 799999999999999999999999999999999999999999999
Q ss_pred EEEECCC
Q 044973 183 IIIVKPP 189 (197)
Q Consensus 183 Vlvv~~~ 189 (197)
|+++|+.
T Consensus 147 Vlvv~~~ 153 (154)
T COG0589 147 VLVVRSE 153 (154)
T ss_pred EEEEccC
Confidence 9999975
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.58 E-value=1.9e-13 Score=115.79 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=92.1
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCC--CCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRG--AGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSI 102 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~--~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (197)
.|+|||||+|+|+.+.+|+++|+.+|+. . +++|+++||.+....... .
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~------------~g~~AeL~lL~Vv~~~~~~~~---------------~--- 53 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEE------------AAETPTVHLVAAASGRAVDPE---------------G--- 53 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHh------------cCCCCEEEEEEEecCcccccc---------------h---
Confidence 3599999999999999999999999988 5 599999999986421100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------cCCceEEEEec--------CChHHHHHHHHHHcCCCEEEEecCCCCccccccc
Q 044973 103 RKAQEENSAALLSRALQICKD------KNVKAETLVLT--------GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALL 168 (197)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~------~gi~~~~~v~~--------g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~ 168 (197)
....+..++.++++.+.+++ .|+++++.+.. |++.+.|+++|+++++||||||-.-.-....-++
T Consensus 54 -~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~ 132 (357)
T PRK12652 54 -QDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPML 132 (357)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCccc
Confidence 11122333344444444443 58999988865 8999999999999999999999643222222223
Q ss_pred ccHHHHHHhhCCCCEEEECCC
Q 044973 169 GSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 169 gs~~~~il~~~~~pVlvv~~~ 189 (197)
. ..+.-|.++.|.+=.-|-.
T Consensus 133 ~-~~~~~~~~~~~~~~~~~~~ 152 (357)
T PRK12652 133 Q-PLERELARAGITYEEAPVE 152 (357)
T ss_pred c-hHHHHHHhcCCceecCCcc
Confidence 3 3355666777766655543
No 15
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.35 E-value=2.6e-11 Score=109.81 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=110.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
.+||||+++++.+...+++|.++|.. .+++++++||..+... ..
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~------------~~a~~~av~v~~~~~~------------------------~~ 292 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASR------------LHAKWTAVYVETPELH------------------------RL 292 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHH------------hCCCeEEEEEeccccc------------------------cc
Confidence 78999999999999999999999999 8999999999887531 11
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEE
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIII 185 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlv 185 (197)
.+..+..+.+....+++.|-++.+.. .+++.++|.++|+.+++.-||+|.+.+++|.+.+.|+.+++++++.+ ..|.+
T Consensus 293 ~~~~~~~l~~~~~Lae~lGae~~~l~-~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 293 SEKEARRLHENLRLAEELGAEIVTLY-GGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHI 371 (890)
T ss_pred cHHHHHHHHHHHHHHHHhCCeEEEEe-CCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEE
Confidence 23455677778888888887777633 47899999999999999999999999999988889999999999997 99999
Q ss_pred ECCCCCC
Q 044973 186 VKPPPKQ 192 (197)
Q Consensus 186 v~~~~~~ 192 (197)
|+...+.
T Consensus 372 i~~~~~~ 378 (890)
T COG2205 372 VALDAPP 378 (890)
T ss_pred eeCCCCc
Confidence 9875543
No 16
>PRK10490 sensor protein KdpD; Provisional
Probab=99.32 E-value=3.3e-11 Score=113.49 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=99.3
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
-.+||||+++++.+.++++++.++|.. .++.++++||..+.....
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~------------~~a~~~~l~V~~~~~~~~----------------------- 294 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAAR------------LGSVWHAVYVETPRLHRL----------------------- 294 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHh------------cCCCEEEEEEecCCcCcC-----------------------
Confidence 378999999999999999999999999 899999999987632100
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVl 184 (197)
....+..+.+..+.+++.|.++.. +..++++++|+++|++.+++.||||.+.++++ ++.||+++++++.++ ..|.
T Consensus 295 -~~~~~~~l~~~~~lA~~lGa~~~~-~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~ 370 (895)
T PRK10490 295 -PEKKRRAILSALRLAQELGAETAT-LSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLV 370 (895)
T ss_pred -CHHHHHHHHHHHHHHHHcCCEEEE-EeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEE
Confidence 011222333344577777888554 33458999999999999999999999988765 556899999999998 9999
Q ss_pred EECCC
Q 044973 185 IVKPP 189 (197)
Q Consensus 185 vv~~~ 189 (197)
||+..
T Consensus 371 iv~~~ 375 (895)
T PRK10490 371 IVALD 375 (895)
T ss_pred EEeCC
Confidence 99744
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.33 E-value=3e-06 Score=57.22 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
|+|+++++..|..++.++.+++ . ....+.++|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~------------~~~~~~~~~~~--------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-S------------GGPEVVALVVV--------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-h------------cCCCEEEEEeH---------------------------------
Confidence 6899999999999999999987 4 56777777763
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccc-cHHHHHHhhCCCCEEE
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLG-SVSDYCAHHVQCPIII 185 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~g-s~~~~il~~~~~pVlv 185 (197)
...+.+.+.+++.++|+|++|.+........+.+ +++..+++.++|||+.
T Consensus 35 ---------------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 ---------------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred ---------------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 5567788889999999999999988877777777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.56 E-value=0.001 Score=62.83 Aligned_cols=150 Identities=10% Similarity=0.112 Sum_probs=86.5
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.-|||+|+...++-...++.+-..... .+..-.++++|+++...........- .......... ..
T Consensus 458 elriL~cv~~~~~v~~li~Lle~s~~t----------~~sp~~vy~lhLveL~~r~~~~l~~h----~~~~~~~~~~-~~ 522 (832)
T PLN03159 458 ELRMLVCVHTPRNVPTIINLLEASHPT----------KRSPICIYVLHLVELTGRASAMLIVH----NTRKSGRPAL-NR 522 (832)
T ss_pred ceeEEEEeccCCcHHHHHHHHHhcCCC----------CCCCceEEEEEEEeecCCCccceeee----eccccccccc-cc
Confidence 458999999887766666544332111 12556899999988543211100000 0000000000 00
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCceEEEEe---cCChHHHHHHHHHHcCCCEEEEecCCCCcccc------cccccHHHHH
Q 044973 106 QEENSAALLSRALQICKD-KNVKAETLVL---TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKR------ALLGSVSDYC 175 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~-~gi~~~~~v~---~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~------~~~gs~~~~i 175 (197)
.....++.+..+....+. .++.++.... ..+..+.|+..|++..+++|+++.|.+..... ..++.+...+
T Consensus 523 ~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~V 602 (832)
T PLN03159 523 TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNV 602 (832)
T ss_pred ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHH
Confidence 011122333333333322 2566664332 24789999999999999999999986533222 2557788999
Q ss_pred HhhCCCCEEEECCCC
Q 044973 176 AHHVQCPIIIVKPPP 190 (197)
Q Consensus 176 l~~~~~pVlvv~~~~ 190 (197)
++++||+|-|.=++.
T Consensus 603 L~~ApCsVgIlVDRg 617 (832)
T PLN03159 603 LANAPCSVGILVDRG 617 (832)
T ss_pred HccCCCCEEEEEeCC
Confidence 999999998886543
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.06 E-value=0.018 Score=44.36 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=67.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|+|++.++.+|..++..+..++.. .+.++.++||.....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~------------~~~~v~~v~vd~g~~---------------------------- 40 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK------------LKIRLIAAHVDHGLR---------------------------- 40 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH------------cCCCEEEEEeCCCCC----------------------------
Confidence 5899999999999999999888777 666799999876531
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC---------ChH--------HHHHHHHHHcCCCEEEEecCCCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG---------DPK--------DMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g---------~~~--------~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.......+.+...++..|+++....... +.. ..+.+.|++.+++.|+.|.+...
T Consensus 41 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 41 PESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 0112234456666777788766543321 122 57788999999999999987644
No 20
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.48 E-value=0.042 Score=52.12 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=81.0
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccC----CCCCCccccCchhHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPA----GPGGAAFYATSSVEQS 101 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 101 (197)
.++|.+..=+.++...||.+|.++|+. .+.++++++..+......... .+.........+.
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~------------p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 694 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEH------------PGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETD--- 694 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcC------------CCeEEEEEEEEccccccccccccccccccccccccccc---
Confidence 359999999999999999999999999 899999999986532111000 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCceEEEEec-C-ChHHHHHHHHHHcCCCEEEEecCCC--C----ccccc----cc
Q 044973 102 IRKAQEENSAALLSRALQICKD-KNVKAETLVLT-G-DPKDMICQAAEQMHMDLLVVGSRGL--G----KIKRA----LL 168 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~-~gi~~~~~v~~-g-~~~~~I~~~a~~~~~dliViG~~~~--~----~~~~~----~~ 168 (197)
.+..++.-++.+++++..... ..+.+.-++.. | +....|-...+ ++||+|+|.++. + ++..| -+
T Consensus 695 -~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~--~ydL~iVGr~~~~~~~~~~gL~~w~e~pEL 771 (832)
T PLN03159 695 -GKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDS--AHDLFIVGRGQGMISPLTAGLTDWSECPEL 771 (832)
T ss_pred -chhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhc--cCcEEEEecCCCCCcchhccccccccCCcc
Confidence 111222334456666665533 23444443332 3 23344444433 599999997532 1 11221 35
Q ss_pred ccHHHHHHhh---CCCCEEEECC
Q 044973 169 GSVSDYCAHH---VQCPIIIVKP 188 (197)
Q Consensus 169 gs~~~~il~~---~~~pVlvv~~ 188 (197)
|.+-|-+... +..+||||..
T Consensus 772 G~iGD~LaS~d~~~~~SVLVvQQ 794 (832)
T PLN03159 772 GAIGDLLASSDFAATVSVLVVQQ 794 (832)
T ss_pred chhhhHHhcCCCCCceeEEEEEe
Confidence 6666666544 2478899864
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.39 E-value=0.092 Score=40.11 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=66.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|+|++++..+|..++..+...... .+.++.++|+.....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~------------~~~~v~~v~id~~~~---------------------------- 40 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR------------LGLRLVAVHVDHGLR---------------------------- 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH------------cCCcEEEEEecCCCC----------------------------
Confidence 5899999999999999999888776 567899999965421
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEE--E-ecCC-h----------HHHHHHHHHHcCCCEEEEecCCCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETL--V-LTGD-P----------KDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~--v-~~g~-~----------~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
....+..+.+.+.+...|++.+.. . ..+. . ...+.++|++.+++.|+.|.+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 41 PESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred chHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 011234455556667778877764 1 1111 1 145778899999999999987543
No 22
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.30 E-value=0.099 Score=40.16 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=61.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|+|++.+..+|..++..+..+.+. .+.++.++||......
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~------------~~~~~~~~~vdh~~~~--------------------------- 41 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRR------------NGIKLIAVHVDHGLRE--------------------------- 41 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTT------------TTTEEEEEEEE-STSC---------------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh------------cCCCeEEEEEecCCCc---------------------------
Confidence 6999999999999999999999888 7779999999876431
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-----C-Ch--------HHHHHHHHHHcCCCEEEEecCCCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-----G-DP--------KDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-----g-~~--------~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
......+.+.+.++..|+++...... + +. ...+.+.|.+.+++.|++|.+...
T Consensus 42 -~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 42 -ESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp -CHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHH
T ss_pred -ccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCc
Confidence 11122345667777878877655443 1 11 246668899999999999987543
No 23
>PRK12342 hypothetical protein; Provisional
Probab=95.26 E-value=0.26 Score=40.18 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=64.7
Q ss_pred EeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 044973 32 ALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSA 111 (197)
Q Consensus 32 ~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
+.-.++...+|++.|+++. . .+.+|+++++-++.. ...
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~------------~g~~Vtvls~Gp~~a-----------------------------~~~ 67 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-T------------DGDEIAALTVGGSLL-----------------------------QNS 67 (254)
T ss_pred CccCChhhHHHHHHHHHHh-h------------cCCEEEEEEeCCChH-----------------------------hHH
Confidence 3446788999999999998 6 678999999877621 011
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC-Ch---HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG-DP---KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g-~~---~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+.++...--+.++-+.-....| |+ +..|..+++..++|||+.|...-..-. |.+.-.+......|.+
T Consensus 68 ~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 68 KVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQLPVI 140 (254)
T ss_pred HHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhCCCcE
Confidence 112222232222233333222233 54 688889999889999999976543322 3344445555555543
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=94.68 E-value=0.33 Score=39.69 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=64.7
Q ss_pred eCCChhhHHHHHHHHHHhccccCCCCCCCCCCCC-CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 044973 33 LDESGESFYALKWALDNLFGITGAVTPGTSDRGA-GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSA 111 (197)
Q Consensus 33 ~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~-~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
.-.++...+|++.|+++... .+ .+|+++.+-++.. ...
T Consensus 32 ~~iN~~D~~AlE~Alrlke~------------~~g~~Vtvvs~Gp~~a-----------------------------~~~ 70 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQ------------AAEAQVTALSVGGKAL-----------------------------TNA 70 (256)
T ss_pred cccChhhHHHHHHHHHHhhh------------cCCCEEEEEEECCcch-----------------------------hhH
Confidence 34678899999999999998 54 8999999877631 011
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC-C---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG-D---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g-~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
..+.++...--+.++-+.-.-..| | .+..|..++++.++|||+.|...-..-. |-+.-.+......|.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~t----gqvg~~lAe~Lg~P~ 142 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYA----QQVGLLVGEILNIPA 142 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCC----CcHHHHHHHHhCCCc
Confidence 223333333223333333222223 3 4678888899989999999976643322 334444444555553
No 25
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.23 E-value=0.82 Score=34.65 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=59.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|+|++.+..+|..++..+..+..... .+-++.++|+.......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----------~~~~~~~~~~d~~~~~~-------------------------- 44 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----------YGFELEALTVDEGIPGY-------------------------- 44 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----------CCeEEEEEEEECCCCCC--------------------------
Confidence 589999999999999988877766510 15688899887653210
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-------------C---------ChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-------------G---------DPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-------------g---------~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.....+.+...+...|+++...... + .....+.+.|++.+++.|+.|.+..
T Consensus 45 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 45 --RDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred --cHHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChH
Confidence 0011222334455556655433221 0 0135667789999999999998754
No 26
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=94.23 E-value=0.86 Score=34.21 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=58.3
Q ss_pred EEEEEeCC-----ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHH
Q 044973 28 KVMVALDE-----SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSI 102 (197)
Q Consensus 28 ~ILv~~d~-----s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (197)
+|||-.+. ++.+..++..|..++.. .+.+++++.+-+...
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~------------~g~~v~av~~G~~~~----------------------- 45 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEA------------LGGEVTAVVLGPAEE----------------------- 45 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHC------------TTSEEEEEEEETCCC-----------------------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhh------------cCCeEEEEEEecchh-----------------------
Confidence 46666654 37899999999999999 788999998774221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEEecC--------ChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 103 RKAQEENSAALLSRALQICKDKNVKAETLVLTG--------DPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g--------~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+++.+...|..--..+... ...+.|.+.+++.++|+|++|....
T Consensus 46 ----------~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 46 ----------AAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp ----------HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred ----------hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 22234444555666433333221 1457888999999999999997654
No 27
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.85 E-value=1.5 Score=38.73 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=67.8
Q ss_pred CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 044973 34 DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAAL 113 (197)
Q Consensus 34 d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
|..-....||..|+..|.. .+..|.+|+++++..... .........+-
T Consensus 32 DLRl~DN~aL~~A~~~a~~------------~~~~vl~vyi~dp~~~~~--------------------~~~r~~Fl~es 79 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALK------------KKLPLHVCFCLVDFFLAA--------------------TRRHYFFMLGG 79 (454)
T ss_pred chhccCCHHHHHHHHHHHH------------cCCCEEEEEEeCCCcccc--------------------cHHHHHHHHHH
Confidence 4444566788888887766 556799999998743110 13455666677
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
|..+.+.+++.|+... +..|++.+.|.+.+++.+++.|+.-..
T Consensus 80 L~~L~~~L~~~g~~L~--v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 80 LDEVANECERLIIPFH--LLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHHHcCCceE--EeecChHHHHHHHHHHcCCCEEEEecc
Confidence 7788888888777764 457999999999999999999999764
No 28
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.7 Score=34.63 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHH---HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQA---AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~---a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+.+.+.+++.|++++..+... ...+.+.++ +++.++..||-|..+.-++.. = +.-.++.||+-||.
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG----m----vAa~T~lPViGVPv 88 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG----M----VAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch----h----hhhcCCCCeEeccC
Confidence 45566777788899999999876 344545444 567788889999887655443 2 44478999999998
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
..+
T Consensus 89 ~s~ 91 (162)
T COG0041 89 QSK 91 (162)
T ss_pred ccc
Confidence 744
No 29
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=93.07 E-value=2.4 Score=31.81 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHH
Q 044973 65 GAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQA 144 (197)
Q Consensus 65 ~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~ 144 (197)
.+.+|..|+|+++.. ..+...+ ........+.+..+...+++.|+.. .+..|++.+.|.++
T Consensus 23 ~~~~v~~vfv~d~~~--~~~~~~~---------------~~r~~Fl~~sL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l 83 (165)
T PF00875_consen 23 NGDPVLPVFVFDPEE--FHPYRIG---------------PRRRRFLLESLADLQESLRKLGIPL--LVLRGDPEEVLPEL 83 (165)
T ss_dssp TTSEEEEEEEE-HHG--GTTCSSC---------------HHHHHHHHHHHHHHHHHHHHTTS-E--EEEESSHHHHHHHH
T ss_pred cCCCeEEEEEecccc--cccccCc---------------chHHHHHHHHHHHHHHHHHhcCcce--EEEecchHHHHHHH
Confidence 567899999999851 0000111 4455566677888888888877664 45779999999999
Q ss_pred HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 145 AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 145 a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+++.+++.|+.... .+...+.. ..-....+.+.++.+..+..
T Consensus 84 ~~~~~~~~V~~~~~-~~~~~~~r-d~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 84 AKEYGATAVYFNEE-YTPYERRR-DERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHHHTESEEEEE----SHHHHHH-HHHHHHHHHHTTSEEEEE--
T ss_pred HHhcCcCeeEeccc-cCHHHHHH-HHHHHHHHHhcceEEEEECC
Confidence 99999999998744 33333222 23344455666777776653
No 30
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=93.01 E-value=0.67 Score=37.96 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=56.0
Q ss_pred EeCCChhhHHHHHHHHHHhc-cccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHH
Q 044973 32 ALDESGESFYALKWALDNLF-GITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENS 110 (197)
Q Consensus 32 ~~d~s~~s~~al~~a~~la~-~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
+...++...+|++.|++|.. . .+.+++++++-++. +
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~------------~~~eV~vlt~Gp~~-------------------------------a 68 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKG------------YGGEVTVLTMGPPQ-------------------------------A 68 (260)
T ss_pred CcccChhhHHHHHHHHHhhccC------------CCceEEEEEecchh-------------------------------h
Confidence 34456788899999999999 5 88999999997652 1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEe----cC----ChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 111 AALLSRALQICKDKNVKAETLVL----TG----DPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~----~g----~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
+..+.+ +-..|..--.++. .+ ..+..|..+++..+.|||++|...-
T Consensus 69 ~~~lr~----aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~ 122 (260)
T COG2086 69 EEALRE----ALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAI 122 (260)
T ss_pred HHHHHH----HHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 122222 2233443222222 22 3578888999999999999997654
No 31
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.79 E-value=3.8 Score=33.27 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=64.0
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQS 101 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
|...-.+|+|++.+..+|...+..+..+.+... .+-+|..+|+....... .
T Consensus 25 li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----------~~~~l~av~vd~g~~~~------~------------- 75 (258)
T PRK10696 25 MIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----------INFELVAVNLDQKQPGF------P------------- 75 (258)
T ss_pred CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----------CCeEEEEEEecCCCCCC------C-------------
Confidence 344557999999999999999988877765510 23478888875432100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec-----------CC---------hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLT-----------GD---------PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----------g~---------~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+ + .+.+.|++.|+++...-.. +. -...+.++|++.++|.|++|.+...
T Consensus 76 --~---~-------~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD 143 (258)
T PRK10696 76 --E---H-------VLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDD 143 (258)
T ss_pred --H---H-------HHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHH
Confidence 0 0 1345677778876643221 11 1145667899999999999987643
No 32
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=91.64 E-value=1.4 Score=33.17 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHH---HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKD---MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~---~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|++++..+..- ...+ .+.+.+++.+++.+|.+......+. --+.-++..||+-||.
T Consensus 13 ~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp--------gvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 13 TMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP--------GMVAALTPLPVIGVPV 84 (156)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH--------HHHHhccCCCEEEecC
Confidence 45667777888899999888764 3444 4444455678888888876644332 3355688999999998
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 85 ~~~ 87 (156)
T TIGR01162 85 PSK 87 (156)
T ss_pred Ccc
Confidence 643
No 33
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.63 E-value=1.6 Score=35.93 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=58.3
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
.+|+|++.+..+|..++..+..+.. . ..+.++||......+
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~-------------~-~~~~a~~Vd~~~~~~------------------------- 62 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGR-------------R-IEVEAVHVDHGLRGY------------------------- 62 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhcc-------------C-ceEEEEEecCCCCCc-------------------------
Confidence 6999999999999988876655522 2 688999998775421
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEE---ecC-C--------------hHHHHHHHHHHcCCCEEEEecCCCCcc
Q 044973 107 EENSAALLSRALQICKDKNVKAETLV---LTG-D--------------PKDMICQAAEQMHMDLLVVGSRGLGKI 163 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v---~~g-~--------------~~~~I~~~a~~~~~dliViG~~~~~~~ 163 (197)
.....+.....+...++.....- ..+ . -...+.+.|++.++|.|+.|.+.....
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 63 ---SDQEAELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred ---cchHHHHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 01122233344444454222111 111 0 134566788999999999998765433
No 34
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=89.12 E-value=9.4 Score=29.94 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=59.3
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
+||.|-+.++.+...|+--|+. ... .++++.+|....+..
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~------------~~a~i~~Visd~~~A--------------------------- 40 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGK------------LDAEIVAVISDKADA--------------------------- 40 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCC------------CCcEEEEEEeCCCCC---------------------------
Confidence 3688888898888888877776 444 567777775544321
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEecCC-----hHHHHHHHHHHcCCCEEEEec
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLTGD-----PKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~-----~~~~I~~~a~~~~~dliViG~ 157 (197)
...+++++.|++....-.... ...+|.+..++.++|+||+..
T Consensus 41 ---------~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 41 ---------YALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred ---------HHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 245677788898765444432 568899999999999999963
No 35
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=89.06 E-value=7.8 Score=33.86 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=62.0
Q ss_pred CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHH
Q 044973 67 GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAE 146 (197)
Q Consensus 67 ~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~ 146 (197)
.+|..|+|+++........... ...-.....-..+-|..+.+.+++.|+.... ..|++.+.|.+.++
T Consensus 27 ~~vl~vfi~dp~~~~~~~~~~~-----------~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v--~~G~~~~vl~~L~~ 93 (429)
T TIGR02765 27 DTLIPLYCFDPRQFKLTHFFGF-----------PKTGPARGKFLLESLKDLRTSLRKLGSDLLV--RSGKPEDVLPELIK 93 (429)
T ss_pred CeEEEEEEECchHhcccccccc-----------CCCCHHHHHHHHHHHHHHHHHHHHcCCCeEE--EeCCHHHHHHHHHH
Confidence 4689999998743211000000 0001344456667778888888887777744 57999999999999
Q ss_pred HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 147 QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 147 ~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
+.+++.|+.-..- +...+.. .....+.+....+++.
T Consensus 94 ~~~~~~V~~~~~~-~~~~~~r-d~~v~~~l~~~~i~~~ 129 (429)
T TIGR02765 94 ELGVRTVFLHQEV-GSEEKSV-ERLLQQALARLGIHVE 129 (429)
T ss_pred HhCCCEEEEeccC-CHHHHHH-HHHHHHHHHhcCceEE
Confidence 9999999987543 2222221 2223333444556643
No 36
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=88.40 E-value=4.2 Score=35.85 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++|+|++.+..+|...+.....+.... .+-+++++||.....
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----------~~~~l~a~hvnhglr-------------------------- 57 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTEN-----------PGVTLRAIHVHHGLS-------------------------- 57 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEeCCCC--------------------------
Confidence 3789999999999999988877765331 467899999976532
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLV 132 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v 132 (197)
....+..+.+.+.|++.|++++..-
T Consensus 58 --~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 58 --PNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred --cchHHHHHHHHHHHHHcCCcEEEEE
Confidence 1112233446677888888877543
No 37
>PRK10867 signal recognition particle protein; Provisional
Probab=88.30 E-value=12 Score=33.11 Aligned_cols=94 Identities=21% Similarity=0.129 Sum_probs=57.4
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+++..-++.-+..+...|..+++. .+.++.++.......
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~------------~G~kV~lV~~D~~R~----------------------------- 142 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKK------------KKKKVLLVAADVYRP----------------------------- 142 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh------------cCCcEEEEEccccch-----------------------------
Confidence 455556677888888888888766 567777775433210
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHH---HHHHHHHHcCCCEEEEecCCCCccccc
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKD---MICQAAEQMHMDLLVVGSRGLGKIKRA 166 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~~~~dliViG~~~~~~~~~~ 166 (197)
...+++..+++..|+++.......+|.+ ..++.++..++|+|++-+.++......
T Consensus 143 ---aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 143 ---AAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred ---HHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHH
Confidence 1223334455566777654322234433 344566777899999999887654433
No 38
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.02 E-value=11 Score=29.36 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=66.1
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+||.-.+..-...+.+.|.++... +.++.++.......
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-------------~~~v~lis~D~~R~----------------------------- 42 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-------------GKKVALISADTYRI----------------------------- 42 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-------------T--EEEEEESTSST-----------------------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-------------cccceeecCCCCCc-----------------------------
Confidence 567777777778888888777554 56777776533211
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHH---HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEE
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMI---CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPII 184 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I---~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVl 184 (197)
...++++..++..|+++.......++.+.+ ++..+..++|+|++-+.+++......+....+ ++.. .+..++
T Consensus 43 ---ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~-~~~~~~~~~~~ 118 (196)
T PF00448_consen 43 ---GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK-LLEALNPDEVH 118 (196)
T ss_dssp ---HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH-HHHHHSSSEEE
T ss_pred ---cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH-HhhhcCCccce
Confidence 144455566666677766533333555544 44455678999999999887665444444433 3333 355555
Q ss_pred EE
Q 044973 185 IV 186 (197)
Q Consensus 185 vv 186 (197)
+|
T Consensus 119 LV 120 (196)
T PF00448_consen 119 LV 120 (196)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 39
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=87.61 E-value=4.4 Score=30.39 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHc---CCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQM---HMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~---~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|+.++..+... ...+.+.+++++. +++.+|.++.....+ .--+.-++..||+-||.
T Consensus 15 ~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L--------pgvva~~t~~PVIgvP~ 86 (150)
T PF00731_consen 15 IAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL--------PGVVASLTTLPVIGVPV 86 (150)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H--------HHHHHHHSSS-EEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc--------hhhheeccCCCEEEeec
Confidence 45667777888899999888765 4566677776654 568777776554333 33355688999999986
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 87 ~~~ 89 (150)
T PF00731_consen 87 SSG 89 (150)
T ss_dssp -ST
T ss_pred Ccc
Confidence 543
No 40
>PRK13820 argininosuccinate synthase; Provisional
Probab=87.53 E-value=15 Score=32.05 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=28.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCC-EEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAG-TVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~-~l~lv~V~~~ 77 (197)
++|+|++.+.-+|..++.++.. . .+. +++++|+...
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e---~------------~g~~~Viav~vd~g 39 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKE---K------------YGYDEVITVTVDVG 39 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHH---h------------cCCCEEEEEEEECC
Confidence 6999999999999888887532 3 344 8999998654
No 41
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=86.71 E-value=18 Score=31.10 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
+-++|+|++.+.-+|.-++..+ +. .+..++.+|+...... .
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL----~~------------~G~~V~~v~~~~~~~~----------------~------- 44 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLL----LE------------AGYEVTGVTFRFYEFN----------------G------- 44 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHH----HH------------cCCeEEEEEEecCCCC----------------C-------
Confidence 4479999999998887766544 34 3467888887542110 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec-----------------C---Ch---------HHHHHHHHHHcCCCEEEE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT-----------------G---DP---------KDMICQAAEQMHMDLLVV 155 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----------------g---~~---------~~~I~~~a~~~~~dliVi 155 (197)
..+.++.+...++..|+++...-.. | ++ ...+.++|++.++|.|+.
T Consensus 45 -----~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IAT 119 (360)
T PRK14665 45 -----STEYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLAT 119 (360)
T ss_pred -----ChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0112444556666667665542221 1 11 245678899999999999
Q ss_pred ecCC
Q 044973 156 GSRG 159 (197)
Q Consensus 156 G~~~ 159 (197)
|.+.
T Consensus 120 GHya 123 (360)
T PRK14665 120 GHYV 123 (360)
T ss_pred CCcc
Confidence 9765
No 42
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=86.48 E-value=7 Score=31.64 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=53.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++++|++.+.-+|.-++..+.+. +.++..+|+..+... .
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----------------g~~v~av~~~~~~~~-----------------------~- 51 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----------------GTEVLAITVVSPSIS-----------------------P- 51 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----------------CCCEEEEEecCCCCC-----------------------H-
Confidence 478999999999888887666443 245888888543110 0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecC------------------ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTG------------------DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g------------------~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..++.+.+.++..|++++..-... .....+.+.|++.+++.|+.|.+.
T Consensus 52 ------~e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 52 ------RELEDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred ------HHHHHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 112233444555566554332110 123456678999999999999754
No 43
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=86.09 E-value=6.7 Score=32.85 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+.++++++.+..+|...+..+...... ....+.++|+..... + .+
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~------------~~~~~~vl~iDTG~~---F--------------------pE 71 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYP------------GKLPFPLLHVDTGWK---F--------------------PE 71 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcc------------cCCCeeEEEEeCCCC---C--------------------HH
Confidence 468999999999999999888665443 355788888876532 1 00
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEec-----C------C--------hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLT-----G------D--------PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----g------~--------~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.++-....++..|+++.+.... | + -...+.+++++.++|.++.|.+...
T Consensus 72 -------t~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 72 -------MIEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred -------HHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1111122345556666553211 1 0 1245778888899999999987643
No 44
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=86.05 E-value=11 Score=33.60 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHH
Q 044973 66 AGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAA 145 (197)
Q Consensus 66 ~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a 145 (197)
+..|.+|+++++..... ...+ ........+-|..+.+.+++.|++.. +..|++.+.|.+.+
T Consensus 26 ~~~vl~vfi~dp~~~~~--~~~~---------------~~r~~Fl~esL~~L~~~L~~~G~~L~--v~~G~p~~vl~~l~ 86 (471)
T TIGR03556 26 SAKVVGLFCLDPNILQA--DDMA---------------PARVAYLIGCLQELQQRYQQAGSQLL--ILQGDPVQLIPQLA 86 (471)
T ss_pred CCCEEEEEEEchhhhcc--ccCC---------------HHHHHHHHHHHHHHHHHHHHCCCCeE--EEECCHHHHHHHHH
Confidence 35699999998742110 0000 22234556667777777888787764 45799999999999
Q ss_pred HHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 146 EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 146 ~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
++.+++.|+.-..- +...... .....+.+....+.|
T Consensus 87 ~~~~~~~V~~~~~~-~~~~~~r-d~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 87 QQLGAKAVYWNLDV-EPYGRKR-DRAVAAALKEAGIAV 122 (471)
T ss_pred HHcCCCEEEEeccc-CHHHHHH-HHHHHHHHHHCCCEE
Confidence 99999999986543 2222222 233334444445554
No 45
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=84.75 E-value=13 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=26.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
+|+|++.+..+|..++..+...... . .++.++|+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~------------~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE------------L-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc------------c-cCceEEEeCCC
Confidence 4889999999998888877665443 2 46778877654
No 46
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.12 E-value=21 Score=31.49 Aligned_cols=114 Identities=20% Similarity=0.145 Sum_probs=73.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
-.||.+-+|.-...+-..|.++.+. +-++.++......+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~-------------~~kvllVaaD~~Rp---------------------------- 141 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK-------------GKKVLLVAADTYRP---------------------------- 141 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc-------------CCceEEEecccCCh----------------------------
Confidence 4678888998888888888888665 34444443322110
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChH---HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPK---DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPI 183 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~---~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pV 183 (197)
...+++.....+.++++-.....-+|. ..=++.+++..+|+||+-+.++-.....++....+ |-.. .|.-+
T Consensus 142 ----AA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~-Ik~~~~P~E~ 216 (451)
T COG0541 142 ----AAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKE-IKEVINPDET 216 (451)
T ss_pred ----HHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHH-HHhhcCCCeE
Confidence 255667777777788877663222444 55567788899999999999988777666555433 2222 24555
Q ss_pred EEEC
Q 044973 184 IIVK 187 (197)
Q Consensus 184 lvv~ 187 (197)
|+|-
T Consensus 217 llVv 220 (451)
T COG0541 217 LLVV 220 (451)
T ss_pred EEEE
Confidence 5553
No 47
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=83.95 E-value=9.9 Score=29.32 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=22.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
++||++++-++-.+.++.++...|.+.
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~ 27 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKR 27 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHC
Confidence 369999999999999998888777544
No 48
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=82.28 E-value=30 Score=29.81 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.++|++.++|.|..|.+.+
T Consensus 98 ~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 98 RMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHHHcCCCEEEECCccc
Confidence 4678899999999999998763
No 49
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=82.11 E-value=14 Score=28.48 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=52.4
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
|+|++.+.-+|..++..+... ...++.++|+.....
T Consensus 1 vvva~SGG~DS~~ll~ll~~~---------------~~~~v~~v~vd~g~~----------------------------- 36 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDA---------------LGDRVLAVTATSPLF----------------------------- 36 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHH---------------hCCcEEEEEeCCCCC-----------------------------
Confidence 578899988888777655443 223688888865421
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEec-----------------C--ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLT-----------------G--DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~-----------------g--~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.....+.+...++..|+++...-.. . -....+.++|++.+++.|+.|.+.
T Consensus 37 -~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 37 -PRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred -CHHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 0112333444556666665543221 0 123456678999999999999764
No 50
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=81.90 E-value=36 Score=30.03 Aligned_cols=94 Identities=20% Similarity=0.123 Sum_probs=55.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
-++++.-++.-+..+...|..+... .+.++.++.......
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~------------~g~kV~lV~~D~~R~---------------------------- 141 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKK------------QGKKVLLVACDLYRP---------------------------- 141 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh------------CCCeEEEEeccccch----------------------------
Confidence 3555666777888888888887655 456676664432210
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChH---HHHHHHHHHcCCCEEEEecCCCCcccc
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPK---DMICQAAEQMHMDLLVVGSRGLGKIKR 165 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~---~~I~~~a~~~~~dliViG~~~~~~~~~ 165 (197)
...+++..+....|+++.......+|. ...++.+...++|+|++-+.++.....
T Consensus 142 ----~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 142 ----AAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred ----HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 012234444555677665533223443 234455666789999999988765433
No 51
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.35 E-value=32 Score=30.34 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
.++..-++.-+..+...|..+.+. +.++.++...... .
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~-------------G~kV~lV~~D~~R-----------------------------~ 141 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK-------------GFKPCLVCADTFR-----------------------------A 141 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-------------CCCEEEEcCcccc-----------------------------h
Confidence 455666777777888888776544 4566666432210 0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHH---HHHHHHHHcCCCEEEEecCCCCcccccccccH
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKD---MICQAAEQMHMDLLVVGSRGLGKIKRALLGSV 171 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~ 171 (197)
...+++....+..++++.......+|.. .-++.++..++|+|++-+.++......++...
T Consensus 142 ---aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El 204 (429)
T TIGR01425 142 ---GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEM 204 (429)
T ss_pred ---hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHH
Confidence 1334444555566777765443345543 33445556689999999998876654444443
No 52
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=80.91 E-value=7.4 Score=32.54 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=33.7
Q ss_pred C-ChHHHHHHHHHHc-------CCCEEEEecCCCCccccccccc-HHHHHHhhCCCCEEEECC
Q 044973 135 G-DPKDMICQAAEQM-------HMDLLVVGSRGLGKIKRALLGS-VSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 135 g-~~~~~I~~~a~~~-------~~dliViG~~~~~~~~~~~~gs-~~~~il~~~~~pVlvv~~ 188 (197)
| +....|++..+.. .+|+||++..|-+...=|.|.+ ..-.-+..+++||+.-=.
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIG 115 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIG 115 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecC
Confidence 5 5667777665443 4899999976644332233443 345566788999886543
No 53
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=78.31 E-value=12 Score=34.34 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-Ch---HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DP---KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~---~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|++++..+..- .. ...+++.+++.+++.+|.++.....+. --+.-++.+||+-||.
T Consensus 425 ~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~--------~~~a~~t~~pvi~vp~ 496 (577)
T PLN02948 425 TMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLP--------GMVASMTPLPVIGVPV 496 (577)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccch--------HHHhhccCCCEEEcCC
Confidence 56677788888999999888764 23 344455567778998888876544333 3355688999999998
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 497 ~~ 498 (577)
T PLN02948 497 KT 498 (577)
T ss_pred CC
Confidence 64
No 54
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=77.58 E-value=32 Score=26.86 Aligned_cols=34 Identities=29% Similarity=0.103 Sum_probs=25.1
Q ss_pred EEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee
Q 044973 30 MVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ 75 (197)
Q Consensus 30 Lv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~ 75 (197)
.++.-.++.+..++..+..+++. .+..+.++.+-
T Consensus 28 ~~~~vi~e~~~~~l~ea~~la~~------------~g~~v~av~~G 61 (202)
T cd01714 28 GVPLIINPYDEYAVEEALRLKEK------------YGGEVTVVSMG 61 (202)
T ss_pred CCCccCChHhHHHHHHHHHhhhh------------cCCEEEEEEEC
Confidence 45556677888899999998887 56677776554
No 55
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.42 E-value=17 Score=25.48 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGK 162 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~ 162 (197)
-+...++..|.++.. .-...+.+.+++.+.+.++|+|.+.......
T Consensus 18 ~~~~~l~~~G~~V~~-lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~ 63 (119)
T cd02067 18 IVARALRDAGFEVID-LGVDVPPEEIVEAAKEEDADAIGLSGLLTTH 63 (119)
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 355667777887733 2234688999999999999999998764333
No 56
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=76.75 E-value=39 Score=27.99 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHhhcCCceEEEEec----CChHHHHHHHHHHcCCCEEEEecCC
Q 044973 120 ICKDKNVKAETLVLT----GDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~----g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+++.|+++...-.. .+....+.+..++.++|++|+....
T Consensus 132 lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 132 LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred HHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 367778988663321 2345578888999999999998654
No 57
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=76.60 E-value=31 Score=27.57 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~i 175 (197)
.+.+..+..++.|++.-..+-.+.|.+.|..+.. ..|+|.+-+-..+.-.+.|+.++.++|
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccCHHHHHHH
Confidence 4556777788889999888888899999999999 799999988777777777777776665
No 58
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=76.43 E-value=23 Score=28.20 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHhhcCCceEEEEecC--Ch---HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 120 ICKDKNVKAETLVLTG--DP---KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g--~~---~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
++.+.++.+.+.-... +| .....+..++.+.|+||+++....... .+-+..++..+..|.+|+...+.
T Consensus 26 rAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG----P~kARE~l~~s~~PaiiigDaPg 98 (277)
T COG1927 26 RADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG----PKKAREILSDSDVPAIIIGDAPG 98 (277)
T ss_pred hcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC----chHHHHHHhhcCCCEEEecCCcc
Confidence 3445567766533221 33 345567788999999999987764432 24678899999999999987653
No 59
>PLN00200 argininosuccinate synthase; Provisional
Probab=76.18 E-value=53 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=28.3
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++|+|++.+.-+|..++.++.. . .+..|+.+++...
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e---~------------~G~eViav~id~G 41 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRE---N------------YGCEVVCFTADVG 41 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---h------------hCCeEEEEEEECC
Confidence 6999999999988888877744 2 3567899988654
No 60
>PRK08185 hypothetical protein; Provisional
Probab=76.14 E-value=12 Score=31.05 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=52.0
Q ss_pred HHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+...+++.+.-+-...... ....++++.|++.+..+|+..+.+........+......+..++.+||.+-=..
T Consensus 4 ~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDH 77 (283)
T PRK08185 4 LLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDH 77 (283)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3445566666655544444 688999999999999999998776532222336778888999999998875443
No 61
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=75.85 E-value=43 Score=27.49 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=57.2
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
..+++|++.+.-+|.-.+..|... .+.++.++.|..|...
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~---------------lG~~v~AvTv~sP~~p------------------------- 56 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEA---------------LGDNVVAVTVDSPYIP------------------------- 56 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHH---------------hccceEEEEEecCCCC-------------------------
Confidence 359999999988777666655444 3456777777765220
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEec------------------CChHHHHHHHHHHcCCCEEEEecC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLT------------------GDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~------------------g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
.+.++.+...+++.|++.+..-.. -...+.|...|.+.++|.|+=|+.
T Consensus 57 -----~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 57 -----RREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred -----hhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 123444555566666654432211 124688999999999999999984
No 62
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=75.43 E-value=36 Score=28.47 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=30.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF 78 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~ 78 (197)
.++++++.+..+|..++..+...... .+..+.++|+....
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~------------~~~p~~vl~IDTG~ 59 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYP------------GPLPFPLLHVDTGW 59 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcc------------cCCCeEEEEEecCC
Confidence 46778899999999999888766544 45678999997653
No 63
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=75.36 E-value=26 Score=31.36 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=23.1
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|++++.++-.+.++++.+..|.+.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~ 96 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKER 96 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhC
Confidence 489999999999999999988877544
No 64
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=75.04 E-value=26 Score=29.72 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...+++.|+.+...+..|+ ..+.+.+.+++.++|.|| +|.... ..++..+......|++.||
T Consensus 37 ~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~--------~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 37 SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT--------LDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH--------HHHHHHHHHHcCCCEEEeC
Confidence 345666777777877666554554 345677778888999877 553221 2344444455578999999
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 109 Tt 110 (349)
T cd08550 109 TI 110 (349)
T ss_pred Cc
Confidence 64
No 65
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=75.03 E-value=3 Score=29.07 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 135 g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
-+-.+.|.++|+++++||+|+|.... +..-+++. ++...+|++
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~p------L~~Gl~D~-l~~~gi~vf 90 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEAP------LVAGLADA-LRAAGIPVF 90 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHHH------HHTTHHHH-HHHTT-CEE
T ss_pred CCCHHHHHHHHHHcCCCEEEECChHH------HHHHHHHH-HHHCCCcEE
Confidence 35678999999999999999996542 23344443 344555554
No 66
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=74.82 E-value=7.7 Score=26.54 Aligned_cols=66 Identities=6% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
....+.+.+++.|++++..-. + ...+.+... ++|+|+++..-.... .....++....+||.++++.
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~--~-~~~~~~~~~--~~Dvill~pqi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAG--S-YGAAGEKLD--DADVVLLAPQVAYML------PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEe--c-HHHHHhhcC--CCCEEEECchHHHHH------HHHHHHhhhcCCCEEEeChh
Confidence 345566777888888765332 2 222434444 789999986543222 23355667778999999875
No 67
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=74.42 E-value=28 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhc
Q 044973 27 MKVMVALDESGESFYALKWALDNLF 51 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~ 51 (197)
|||+|++.++....++.+..-.|.+
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~ 25 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK 25 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH
Confidence 5899999999988888876666643
No 68
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=74.41 E-value=24 Score=27.45 Aligned_cols=25 Identities=12% Similarity=-0.064 Sum_probs=19.7
Q ss_pred CEEEEEeCCChhhHHHH-HHHHHHhc
Q 044973 27 MKVMVALDESGESFYAL-KWALDNLF 51 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al-~~a~~la~ 51 (197)
++|++++.++-.+.+++ +..-.|.+
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~ 26 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVD 26 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHh
Confidence 58999999999999996 66655533
No 69
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.34 E-value=57 Score=28.67 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=63.4
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
.+|.+.++.-...+-.+|..+-+. +-++.++.. +.+.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkk-------------G~K~~Lvca-DTFR----------------------------- 141 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKK-------------GYKVALVCA-DTFR----------------------------- 141 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhc-------------CCceeEEee-cccc-----------------------------
Confidence 567788888778888888888666 334444322 2211
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHH---HHHHHHHHcCCCEEEEecCCCCcccccccc
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKD---MICQAAEQMHMDLLVVGSRGLGKIKRALLG 169 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~~~~dliViG~~~~~~~~~~~~g 169 (197)
...++++.+.+.+.++++-....+.+|+. +=++-.++.++|+||+-++++..-..-+|-
T Consensus 142 --agAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfe 203 (483)
T KOG0780|consen 142 --AGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFE 203 (483)
T ss_pred --cchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHH
Confidence 12566677777777888887666656544 334556778999999999987665544443
No 70
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.05 E-value=13 Score=27.27 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=44.8
Q ss_pred eEEEEec--CChHHHHHHHHHHcCCCEEEEecCCC----CcccccccccHHHHHHhhC-CCCEEEECCCCC
Q 044973 128 AETLVLT--GDPKDMICQAAEQMHMDLLVVGSRGL----GKIKRALLGSVSDYCAHHV-QCPIIIVKPPPK 191 (197)
Q Consensus 128 ~~~~v~~--g~~~~~I~~~a~~~~~dliViG~~~~----~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~~ 191 (197)
..+.... +...+.|.+.+++.+++.||+|-.-. ........-..++.+.... ++||..+-....
T Consensus 28 l~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 28 LETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp EEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred eEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 4444444 36899999999999999999997432 1222223456677788887 899999866543
No 71
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=73.42 E-value=26 Score=29.26 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGD-PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
....+.+.++...++..|..++.+..+.. -+..+++.+...++|+||.+.-+ + .++.++..+...-..|+-++
T Consensus 16 ~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD-G-----Tv~evingl~~~~~~~Lgil 89 (301)
T COG1597 16 GKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD-G-----TVNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc-c-----hHHHHHHHHhcCCCCceEEe
Confidence 45667888888999999999888887764 67777777777799999997443 2 23455665555544447777
Q ss_pred CCC
Q 044973 187 KPP 189 (197)
Q Consensus 187 ~~~ 189 (197)
|-.
T Consensus 90 P~G 92 (301)
T COG1597 90 PGG 92 (301)
T ss_pred cCC
Confidence 753
No 72
>PRK06801 hypothetical protein; Provisional
Probab=73.17 E-value=21 Score=29.66 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccc-cccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKR-ALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~-~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+....+++.+.-+-...... ....++++.|++.+..+|+..+.+...... ..+......++.++..||.+-=..
T Consensus 7 ~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH 83 (286)
T PRK06801 7 ANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDH 83 (286)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344455666666665555554 688999999999999999988776533222 346788889999999998875443
No 73
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=72.98 E-value=8.7 Score=26.62 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..++..+.+++.|++++..- ....++-...+ ++|+|++|..-+... .-....+.....||.++++
T Consensus 16 la~km~~~a~~~gi~~~i~a---~~~~e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 16 LANALNKGAKERGVPLEAAA---GAYGSHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEE---eeHHHHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcCCCEEEeCH
Confidence 34456667778899877543 23344555555 789999986543222 2335566667899998875
No 74
>TIGR00930 2a30 K-Cl cotransporter.
Probab=72.86 E-value=85 Score=30.75 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=75.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|||.+.........++++..+.+. ..-+.+.||.+... ....
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~~~-------------~gl~i~~~v~~~~~------------------------~~~~ 619 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFTKG-------------KGLMICGSVIQGPR------------------------LECV 619 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhccC-------------CcEEEEEEEecCch------------------------hhhH
Confidence 5899998777888899999998744 56777788876531 1112
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHH-----cCCCEEEEecCCCCccc-----ccccccHHHHHH
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQ-----MHMDLLVVGSRGLGKIK-----RALLGSVSDYCA 176 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~-----~~~dliViG~~~~~~~~-----~~~~gs~~~~il 176 (197)
++.+...++...+++..+++.-..+... +..+.+....+. ..+..|++|......-. ..++ .+... +
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~-~~i~~-a 697 (953)
T TIGR00930 620 KEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYI-GIIHD-A 697 (953)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHH-HHHHH-H
Confidence 2223334445555666777655545444 677777777764 45889999986531100 1111 22222 2
Q ss_pred hhCCCCEEEECC
Q 044973 177 HHVQCPIIIVKP 188 (197)
Q Consensus 177 ~~~~~pVlvv~~ 188 (197)
......|+|.+.
T Consensus 698 ~~~~~~v~i~r~ 709 (953)
T TIGR00930 698 FDAHLAVVVVRN 709 (953)
T ss_pred HHcCCcEEEEcc
Confidence 466788999885
No 75
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=72.78 E-value=21 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.021 Sum_probs=35.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQ 79 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~ 79 (197)
..+|.+..=+.++...|+.++.+++.+ ...++++++.++...
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~------------~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAEN------------PRVTLTVIRFFPDES 655 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhC------------CceEEEEEEeeccch
Confidence 357777777788888899999999998 899999999988653
No 76
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=72.76 E-value=32 Score=30.01 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=22.1
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|++++-++-...+++++...|.+.
T Consensus 6 ~k~IllgvTGsiaa~k~~~lv~~L~~~ 32 (399)
T PRK05579 6 GKRIVLGVSGGIAAYKALELVRRLRKA 32 (399)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHHHhC
Confidence 479999999999888888888777433
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=72.74 E-value=46 Score=27.54 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++.++..++-.+..- .. .++++.+|-...+.
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~------------l~~~i~~visn~~~-------------------------- 123 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GE------------LDAEIALVISNHED-------------------------- 123 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CC------------CCcEEEEEEEcChh--------------------------
Confidence 3468999999999888887666433 22 34565555332220
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec-C---ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT-G---DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g---~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+...+++.|+++...-.. . .....+.+..++.++|++|+....
T Consensus 124 ------------~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 124 ------------LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred ------------HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 122367778988654331 1 234678888999999999998544
No 78
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=72.73 E-value=56 Score=27.42 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=47.9
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccHHHHHHhhCCCCEEEECCCCCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQH 193 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~~ 193 (197)
..+.+++.|+++...+. .++..+.+ .+|.+++|++.- +.+....-.+..--+.++...|++++-...+.+
T Consensus 162 ~ak~L~~~gI~~~~I~D-----sa~~~~~~--~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~ 234 (301)
T COG1184 162 MAKELRQSGIPVTVIVD-----SAVGAFMS--RVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFV 234 (301)
T ss_pred HHHHHHHcCCceEEEec-----hHHHHHHH--hCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeeccc
Confidence 45667778888877653 34566666 799999999863 233333323556778899999999996554433
No 79
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=72.65 E-value=38 Score=27.16 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
...-+.+.++++...+.+.++...+..|--.+.|.+. .+-++|.+|+|+.
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~-~~aGad~~V~Gss 199 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKL-MEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH-HHcCCCEEEEChH
Confidence 3334455566666667788877777655444555544 4459999999965
No 80
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=72.49 E-value=41 Score=27.00 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
.-+.+.++++..++.+.++...+..|--.+.+ ..+.+-++|.+|+|+.
T Consensus 162 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti-~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 162 ILDRVIQVENRLGNRRVEKLISIDGSMTLELA-SYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCHHHH-HHHHHCCCCEEEEChh
Confidence 33455556666666777777766555344444 4555569999999965
No 81
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=72.15 E-value=13 Score=27.31 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC----CcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL----GKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~----~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
..+.|.+.+++.+++.||+|-.-. ...........++.|-...++||..+-...
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 478899999999999999995432 111122344567777777789999886543
No 82
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=72.00 E-value=25 Score=29.16 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+++.+.-+-.....+ ....++++.|++.+..+|+..+.+.-.. ...+++......++++.+||.+-=..
T Consensus 7 ~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH 83 (281)
T PRK06806 7 KELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDH 83 (281)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345556666677666555555 6889999999999999999887654222 22245677788899999998875443
No 83
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.96 E-value=26 Score=23.73 Aligned_cols=71 Identities=18% Similarity=0.079 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCceEEEEec-CChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLT-GDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~-g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
....+...+++.|.+...+-.. |.... .|-.... .+|+||+-+.--++-.- ..+.....+...|++.++..
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~----~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHNAM----WKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChHHH----HHHHHHHHHcCCcEEEECCC
Confidence 4566778888888888777222 22222 3666666 89999998766543322 34566778888999999854
No 84
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.84 E-value=57 Score=27.13 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=54.7
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++.++..++-.+... .. .++++.+| +.+.+
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~-~~------------l~~~i~~v--isn~~------------------------- 131 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRM-GE------------LDMDIVGI--ISNHP------------------------- 131 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHC-CC------------CCcEEEEE--EECCh-------------------------
Confidence 4468999999998888888766443 22 34555554 33311
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec----CChHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT----GDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~----g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+.+.+++.|+++...-.. ......+.+..++.++|++|+....
T Consensus 132 -----------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 132 -----------DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred -----------hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 1235567779988753211 2235678899999999999998654
No 85
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=71.46 E-value=39 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~ 161 (197)
..+.++|++.+++.|++|.+...
T Consensus 66 ~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 66 SIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHHHCCCCEEEEeeccCc
Confidence 45677889999999999987643
No 86
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=71.35 E-value=21 Score=29.60 Aligned_cols=75 Identities=8% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+++.+.-+-.....+ ....++++.|++.+..+|+.-+.+.-.. ..-.+......++.++++||.+-=..
T Consensus 7 ~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 7 KNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344455666666665555555 6889999999999999999876643221 11235677888999999999876443
No 87
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.85 E-value=68 Score=28.34 Aligned_cols=72 Identities=6% Similarity=0.018 Sum_probs=37.6
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC-CEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC-PIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~-pVlvv~~ 188 (197)
+...+...|+++.......+..+.|-.+.+..++|+|++-+-+++.-....+......+-...+. .+|++..
T Consensus 288 Lk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 288 LQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred HHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 33445556777664332233444444444445799999999887654443344443322222332 3455543
No 88
>PRK00919 GMP synthase subunit B; Validated
Probab=70.81 E-value=53 Score=27.62 Aligned_cols=37 Identities=24% Similarity=0.137 Sum_probs=28.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF 78 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~ 78 (197)
++++|++.+.-+|.-++..+.+ . .+.+++++|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~------------lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---A------------IGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---H------------hCCeEEEEEEECCC
Confidence 6899999999888888765544 3 45689999998763
No 89
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=70.65 E-value=47 Score=26.52 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
+.+.++++...+.+.++...+..|--.+.|- .+.+.++|.+|+|+.
T Consensus 156 ~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~-~l~~aGaDi~V~GSa 201 (223)
T PRK08745 156 DKLRAIRKKIDALGKPIRLEIDGGVKADNIG-AIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHHHhcCCCeeEEEECCCCHHHHH-HHHHcCCCEEEEChh
Confidence 3445555666666777777665453444444 455569999999965
No 90
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=70.54 E-value=25 Score=29.24 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
++...+++.+.-+-..-..+ ....++++.|++.+..+|+..+.+.-. .....+......++.++++||.+-=..
T Consensus 8 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 83 (286)
T PRK12738 8 YLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455566666655444444 688999999999999999987654321 222345678888999999999876443
No 91
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.49 E-value=24 Score=29.32 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+++.+.-+-.....+ ....++++.|++.+..+|+..+.+.... ..-.+......++.++++||.+-=..
T Consensus 7 k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH 83 (284)
T PRK12857 7 AELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDH 83 (284)
T ss_pred HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344455666666555544445 6889999999999999999887654221 22235667788889999999876443
No 92
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.17 E-value=22 Score=29.52 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccc-cccccHHHHHHhhCCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKR-ALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~-~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
++.+.+++.+.-+-.....+ ....++++.|++.+..+|+.-+.+.-.... -.+......++.++++||.+-=..
T Consensus 8 ~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 8 QMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455566666555444444 688999999999999999987765322121 245678888999999998875443
No 93
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=69.49 E-value=10 Score=26.53 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
......+.+++.|++++..- . ...++-+.....++|+|++|.+-+... .-...+......||.++++.
T Consensus 17 la~k~k~~~~e~gi~~~i~a--~-~~~e~~~~~~~~~~DvIll~PQi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 17 MAKKTTEYLKEQGKDIEVDA--I-TATEGEKAIAAAEYDLYLVSPQTKMYF------KQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHHHHHHHHHCCCceEEEE--e-cHHHHHHhhccCCCCEEEEChHHHHHH------HHHHHHhhhcCCCEEEeCHH
Confidence 44455666777888766433 2 223355555555799999985543211 23355556678999999863
No 94
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=69.44 E-value=13 Score=26.14 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
......+.|++.++..||+-+.. |.++..+.+.-| |||+.+-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCc
Confidence 45677888999999999998765 567777777765 999988654
No 95
>PRK11914 diacylglycerol kinase; Reviewed
Probab=69.43 E-value=31 Score=28.49 Aligned_cols=70 Identities=24% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+++...+++.|+.+....... .-...+.+.+.+.++|+||+.. +.+.+ ..++..+. ..+.|+-++|-.
T Consensus 27 ~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-GDGTi-----~evv~~l~-~~~~~lgiiP~G 97 (306)
T PRK11914 27 AAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-GDGVI-----SNALQVLA-GTDIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-CchHH-----HHHhHHhc-cCCCcEEEEeCC
Confidence 34455566777788776655433 3456666666667889877653 22322 23444443 457899999854
No 96
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=69.40 E-value=26 Score=29.09 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
++...+++.+.-+-..-..+ ....++++.|++.+..+|+.-+.+.-. .....+......++.++.+||.+-=..
T Consensus 6 ~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 6 YMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDH 81 (282)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455566666655544444 688999999999999999988765422 222335678889999999999876443
No 97
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.08 E-value=19 Score=31.66 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=34.0
Q ss_pred C-ChHHHHHHHHHHcC---CCEEEEecCCCCccccccccc-HHHHHHhhCCCCEEEECC
Q 044973 135 G-DPKDMICQAAEQMH---MDLLVVGSRGLGKIKRALLGS-VSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 135 g-~~~~~I~~~a~~~~---~dliViG~~~~~~~~~~~~gs-~~~~il~~~~~pVlvv~~ 188 (197)
| .....|++..+..+ +|+||++..|-+...=|.|.. ..-..+.++++||+.-=.
T Consensus 174 G~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IG 232 (438)
T PRK00286 174 GEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVG 232 (438)
T ss_pred CccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEecc
Confidence 5 46777777665444 599999976643222233443 345566788999886543
No 98
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=68.07 E-value=29 Score=29.68 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-ccc---------------ccccHHHHHH
Q 044973 114 LSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRA---------------LLGSVSDYCA 176 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~---------------~~gs~~~~il 176 (197)
+.++...+++.+.-+-...... ....+|++.|++.+..+|+.-+.+.... ... .+......+.
T Consensus 4 ~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A 83 (345)
T cd00946 4 VLKLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMA 83 (345)
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHH
Confidence 3344455666666665555554 6889999999999999999887653211 111 4567778899
Q ss_pred hhCCCCEEEECCCC
Q 044973 177 HHVQCPIIIVKPPP 190 (197)
Q Consensus 177 ~~~~~pVlvv~~~~ 190 (197)
.++++||.+-=...
T Consensus 84 ~~~~VPValHLDHg 97 (345)
T cd00946 84 EHYGVPVVLHTDHC 97 (345)
T ss_pred HHCCCCEEEECCCC
Confidence 99999988764443
No 99
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=67.86 E-value=61 Score=26.28 Aligned_cols=62 Identities=11% Similarity=-0.035 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCc-eEEEEecC---ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 114 LSRALQICKDKNVK-AETLVLTG---DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 114 l~~~~~~~~~~gi~-~~~~v~~g---~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
.+.+...++..|++ ++...... ....++.+..+ ++|.|+++--....+.+.+-++-..++|+
T Consensus 45 ~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~~l~~t~l~~~l~ 110 (250)
T TIGR02069 45 GERYITIFSRLGVKEVKILDVREREDASDENAIALLS--NATGIFFTGGDQLRITSLLGDTPLLDRLR 110 (250)
T ss_pred HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHHHHcCCcHHHHHH
Confidence 34455666777874 55444321 12244566666 89999998666555555555555555554
No 100
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=67.72 E-value=89 Score=27.72 Aligned_cols=97 Identities=11% Similarity=-0.014 Sum_probs=60.5
Q ss_pred EEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH
Q 044973 68 TVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ 147 (197)
Q Consensus 68 ~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~ 147 (197)
.|..|+|+++..... ...+ ........+-|..+.+.+++.|+...+.. .|++.+.|.+.+++
T Consensus 24 ~vlpvyi~dp~~~~~--~~~~---------------~~~~~fl~~sL~~L~~~L~~~G~~L~v~~-~g~~~~~l~~l~~~ 85 (475)
T TIGR02766 24 PVIPVFVWAPEEEGQ--YYPG---------------RVSRWWLKQSLAHLDQSLRSLGTCLVTIR-STDTVAALLDCVRS 85 (475)
T ss_pred CEEEEEEechHHhcc--cccc---------------HHHHHHHHHHHHHHHHHHHHcCCceEEEe-CCCHHHHHHHHHHH
Confidence 699999998743111 0001 12233556677778888888887776532 58999999999999
Q ss_pred cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 148 MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 148 ~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
.+++-|..-.. ....... ......+.+...++.+.
T Consensus 86 ~~i~~v~~~~~-~~~~~~~-rd~~v~~~l~~~gi~~~ 120 (475)
T TIGR02766 86 TGATRLFFNHL-YDPVSLV-RDHRAKEVLTAQGISVQ 120 (475)
T ss_pred cCCCEEEEecc-cCHHHHH-HHHHHHHHHHHcCCEEE
Confidence 99999988655 2332222 23334445554455443
No 101
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=67.54 E-value=7.4 Score=28.86 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
++++.+.+.+.|++++..-........+.+..+ ++|.|+++--......+.+.++-.+..|++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~--~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIR--EADAIFLGGGDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH--HSSEEEE--S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHhCCHHHHHHH
Confidence 567788888999887665555545567777777 799999986555555555555555655554
No 102
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.01 E-value=38 Score=27.53 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=44.1
Q ss_pred HhhcCCceEEEEecC------ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCCC
Q 044973 121 CKDKNVKAETLVLTG------DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 121 ~~~~gi~~~~~v~~g------~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~ 192 (197)
+.+.++.+.+.- .| +..+......++.+.|++|+.+....... ..-+..++..+..|.+|+...+..
T Consensus 27 AdRedI~vrv~g-sGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p~~ 99 (277)
T PRK00994 27 ADREDIDVRVVG-SGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAGIPCIVIGDAPGK 99 (277)
T ss_pred hcccCceEEEec-cCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcCCCEEEEcCCCcc
Confidence 344466666533 33 12334445567889999999877654332 245788999999999999876543
No 103
>PRK14057 epimerase; Provisional
Probab=66.78 E-value=57 Score=26.66 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..-+.+.++++...+.|..+...+..|--.+.|- .+.+-++|.+|+|+.-
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~-~l~~aGad~~V~GSal 224 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLP-SLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHH-HHHHCCCCEEEEChHh
Confidence 3334555666666677777777775554444444 4455699999999653
No 104
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=66.49 E-value=67 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=27.7
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF 78 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~ 78 (197)
++++|++.+.-+|..++..+.. . .+.+++++|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~---~------------~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHR---A------------IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHH---H------------hCCCEEEEEEeCCC
Confidence 6899999999888777655533 2 34689999998763
No 105
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=66.28 E-value=46 Score=24.65 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhcCC---ceEEEEecC--ChHHHHHHHHHHcCCCEEEE-ec--CCCCcccccccccHHHHHHhh-
Q 044973 108 ENSAALLSRALQICKDKNV---KAETLVLTG--DPKDMICQAAEQMHMDLLVV-GS--RGLGKIKRALLGSVSDYCAHH- 178 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi---~~~~~v~~g--~~~~~I~~~a~~~~~dliVi-G~--~~~~~~~~~~~gs~~~~il~~- 178 (197)
.-.+..++.+.+.+...|+ +++...+.| +..-.+-..++..++|.+|. |. ++.+..-.....+++..+++-
T Consensus 16 ~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~ls 95 (144)
T PF00885_consen 16 EITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLS 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHh
Confidence 4556677888888888888 677777777 57778888888877887765 53 666666566666666666543
Q ss_pred --CCCCEEE
Q 044973 179 --VQCPIII 185 (197)
Q Consensus 179 --~~~pVlv 185 (197)
...||..
T Consensus 96 l~~~~PV~~ 104 (144)
T PF00885_consen 96 LEYGIPVIF 104 (144)
T ss_dssp HHHTSEEEE
T ss_pred ccCCccEEE
Confidence 3567653
No 106
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=66.25 E-value=87 Score=27.87 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=51.4
Q ss_pred CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEe--cCChHHHHHHH
Q 044973 67 GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVL--TGDPKDMICQA 144 (197)
Q Consensus 67 ~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~--~g~~~~~I~~~ 144 (197)
..|..|+|+++....... . .........+-|..+.+.+++.|+......- .|++.+.|.+.
T Consensus 29 ~~vlpvyv~dp~~~~~~~--~---------------~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l 91 (472)
T PRK10674 29 ARVLALFIATPAQWAAHD--M---------------APRQAAFINAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQF 91 (472)
T ss_pred CCEEEEEEECchhhccCC--C---------------CHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHH
Confidence 359999999874311100 0 1334455666777777888888877755432 36899999999
Q ss_pred HHHcCCCEEEEecC
Q 044973 145 AEQMHMDLLVVGSR 158 (197)
Q Consensus 145 a~~~~~dliViG~~ 158 (197)
+++.+++-|+.-..
T Consensus 92 ~~~~~i~~v~~~~~ 105 (472)
T PRK10674 92 CQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHcCCCEEEEecc
Confidence 99999999988643
No 107
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.83 E-value=34 Score=26.55 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=43.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC---CCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ---CPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~---~pVlvv 186 (197)
+...++..|.++.. +-.+.+.+.|++.+++.++|+|.+.......... +..+.+.+-...+ ++|++-
T Consensus 102 v~~~l~~~G~~vi~-lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 102 VATMLEANGFEVID-LGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 45567778887732 2234589999999999999999998754443332 2445555544432 455554
No 108
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=65.59 E-value=79 Score=26.37 Aligned_cols=78 Identities=14% Similarity=0.022 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~ 188 (197)
+.++.+.+.+. ..+++-..+-..+. .-...+.|++.++|-+++-.........--+-..-..|+..+ +.||++...
T Consensus 65 ~v~~~~~~~~~-grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 65 AFVATVVETVA-GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 34444444442 24555555544344 344557889999999998876543333222223446678888 599999965
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
+.
T Consensus 144 P~ 145 (309)
T cd00952 144 PE 145 (309)
T ss_pred ch
Confidence 53
No 109
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=65.42 E-value=84 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~ 159 (197)
....+.+.|++.++|.|+-|+..
T Consensus 94 i~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 94 IAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred HHHHHHHHHHHcCCCEEEECccC
Confidence 34668899999999999999854
No 110
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=65.22 E-value=56 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=26.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF 78 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~ 78 (197)
+++|++.+.-+|..++.++.+ .+.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----------------~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----------------RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----------------cCCeEEEEEEeCCC
Confidence 488999998888877766543 34678899987663
No 111
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=65.18 E-value=71 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPPP 190 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 190 (197)
-++.+.|++.++|-+++...........-+-..-..|+..+ ++||++...+.
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 44557789999999998776544333222334456677888 79999996553
No 112
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=64.83 E-value=45 Score=26.65 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEec-----CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLT-----GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
.-.....+..+++.+++.|.+|...-.. ++..+.|.++.++.+++-|++-..+...+. .....+.....|
T Consensus 44 l~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~-----~~l~~~~~~~~i 118 (224)
T PF04244_consen 44 LVLFFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLE-----QRLESLAQQLGI 118 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHH-----HHHHH----SSS
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHH-----HHHHhhhcccCC
Confidence 3344556777888888899999987765 256899999999999999999766654333 334556677889
Q ss_pred CEEEECCCC
Q 044973 182 PIIIVKPPP 190 (197)
Q Consensus 182 pVlvv~~~~ 190 (197)
|+-+++.+.
T Consensus 119 ~~~~~~~~~ 127 (224)
T PF04244_consen 119 PLEVLEDPH 127 (224)
T ss_dssp -EEEE--TT
T ss_pred ceEEeCCCC
Confidence 999998753
No 113
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=64.50 E-value=31 Score=28.56 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=51.5
Q ss_pred HHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEECCCC
Q 044973 117 ALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+...+++.+.-+-...... +...++++.|++.+..+|+--+.+.-.. .-..+......+..++.+||.+-=...
T Consensus 4 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 4 LLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4455566666555544444 6889999999999999999876654222 223456778888999999998864433
No 114
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=64.38 E-value=18 Score=24.63 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.+.+++.|++++..-. +. ..+-.... ++|+|+++..-..... .....+....+||.++++.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~--~~-~~~~~~~~--~~Diil~~Pqv~~~~~------~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAV--PE-SELEEYID--DADVVLLGPQVRYMLD------EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEe--cH-HHHHHhcC--CCCEEEEChhHHHHHH------HHHHHhccCCCcEEEcChH
Confidence 345667778888888665432 22 22333444 7999999855432221 2233344568999999875
No 115
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=64.35 E-value=60 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+.|.+.+++.++|+|++|....
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 57788888888999999998765
No 116
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=64.30 E-value=65 Score=28.92 Aligned_cols=72 Identities=6% Similarity=-0.035 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcC-CceEEEEec-CChHHHHHHHHHHc----CCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 113 LLSRALQICKDKN-VKAETLVLT-GDPKDMICQAAEQM----HMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 113 ~l~~~~~~~~~~g-i~~~~~v~~-g~~~~~I~~~a~~~----~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
.-+++.+.+...+ ++++..... -+..+.|.+..++. ++|.||+-.+..+.- +..-.+++..++|||+.
T Consensus 24 ~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~PvL~~ 97 (484)
T cd03557 24 HSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPA------KMWIAGLTALQKPLLHL 97 (484)
T ss_pred HHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchH------HHHHHHHHHcCCCEEEE
Confidence 3334445544432 455553332 14556666666664 599999988877643 33445688899999999
Q ss_pred CCCC
Q 044973 187 KPPP 190 (197)
Q Consensus 187 ~~~~ 190 (197)
....
T Consensus 98 ~~q~ 101 (484)
T cd03557 98 HTQF 101 (484)
T ss_pred ccCC
Confidence 7654
No 117
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.06 E-value=47 Score=23.47 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
+...++..|.++...- ...+.+.+++.+.+.++|+|++.......... .....+.+-..
T Consensus 19 ~~~~l~~~G~~vi~lG-~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~--~~~~~~~L~~~ 77 (122)
T cd02071 19 IARALRDAGFEVIYTG-LRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTL--FPEVIELLREL 77 (122)
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEcccchhhHHH--HHHHHHHHHhc
Confidence 4456777777766522 23688999999999999999998765433322 23444444333
No 118
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=63.95 E-value=54 Score=26.48 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
+..+.|.+.+.+.+.|.|.+|-+.- ...--...+.+.|-.+...||++.|....
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~g--vt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDG--VTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccc--ccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 4678899999999999999996652 22112345667777788999999997543
No 119
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.76 E-value=31 Score=30.37 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=33.2
Q ss_pred C-ChHHHHHHHHHH----cCCCEEEEecCCCCccccccccc-HHHHHHhhCCCCEEEECCC
Q 044973 135 G-DPKDMICQAAEQ----MHMDLLVVGSRGLGKIKRALLGS-VSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 135 g-~~~~~I~~~a~~----~~~dliViG~~~~~~~~~~~~gs-~~~~il~~~~~pVlvv~~~ 189 (197)
| .....|+...+. ..+|+||++..|-+.-.=|.|.. ..-.-+..+++||+.-=..
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGH 228 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGH 228 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCc
Confidence 5 456666665442 33799999976644332233443 3445667889999875433
No 120
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.19 E-value=73 Score=28.16 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 28 KVMVALDES-GESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 28 ~ILv~~d~s-~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
=||+.=|+. .-|.-.|+.+.++|+. . .++||.-..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~------------~----~vLYVsGEE---------------------------- 130 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR------------G----KVLYVSGEE---------------------------- 130 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc------------C----cEEEEeCCc----------------------------
Confidence 356655553 4677889999999988 4 678887652
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEE-EEecCChHHHHHHHHHHcCCCEEEEecCCC--CcccccccccH------HH---H
Q 044973 107 EENSAALLSRALQICKDKNVKAET-LVLTGDPKDMICQAAEQMHMDLLVVGSRGL--GKIKRALLGSV------SD---Y 174 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~-~v~~g~~~~~I~~~a~~~~~dliViG~~~~--~~~~~~~~gs~------~~---~ 174 (197)
...+.+-++++.|+.... .+..-.-.+.|++..++.++|++|+-+=.- +.-...--||+ +. +
T Consensus 131 ------S~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 131 ------SLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred ------CHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 233445555666765443 334446778899999999999999987321 11001112332 22 3
Q ss_pred HHhhCCCCEEEECCC
Q 044973 175 CAHHVQCPIIIVKPP 189 (197)
Q Consensus 175 il~~~~~pVlvv~~~ 189 (197)
+++...+++++|-.-
T Consensus 205 ~AK~~~i~~fiVGHV 219 (456)
T COG1066 205 LAKTKNIAIFIVGHV 219 (456)
T ss_pred HHHHcCCeEEEEEEE
Confidence 455567999998543
No 121
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=62.83 E-value=81 Score=25.60 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+.++.+.+.+. ..+++-..+...+. ...+.+.|++.++|-+++...........-+-..-..|+..++.||++...
T Consensus 53 ~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 53 KEVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 334444445443 23444444433333 445557789999999999876554433322334456677788999999865
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
+.
T Consensus 132 P~ 133 (281)
T cd00408 132 PG 133 (281)
T ss_pred cc
Confidence 54
No 122
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=62.81 E-value=68 Score=27.92 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLF 51 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~ 51 (197)
-++|++++.++-.+.++++.+..|.+
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~ 28 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVR 28 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 37999999999999999888877743
No 123
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=62.74 E-value=68 Score=26.42 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-..+-..+..+. ..+.|++.++|.+++-..........-+-..-..|+..++.||++...+
T Consensus 62 ~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 62 VLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred HHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 44444444432 3444443333344444 4577899999999998765544332222344566788889999999654
No 124
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.74 E-value=35 Score=28.37 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEECC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
++...+++.+.-+-.....+ ....++++.|++.+..+|+-.+.+.-.. .-..+......++.++.+||-+-=.
T Consensus 8 ~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLD 82 (283)
T PRK07998 8 ILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLD 82 (283)
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECc
Confidence 34455666666665555555 5789999999999999999887653222 2234567788899999999987544
No 125
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=62.62 E-value=46 Score=28.58 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c---ccc------------cccHHHHHHhh
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K---RAL------------LGSVSDYCAHH 178 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~---~~~------------~gs~~~~il~~ 178 (197)
++...+++.+.-+-.....+ ....+|++.|++.+..+|+..+.+.... . -.. +......++.+
T Consensus 11 ~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 90 (350)
T PRK09197 11 EMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEH 90 (350)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 34455566666666555555 6889999999999999999877653221 1 011 45677888899
Q ss_pred CCCCEEEECCCC
Q 044973 179 VQCPIIIVKPPP 190 (197)
Q Consensus 179 ~~~pVlvv~~~~ 190 (197)
+++||.+-=...
T Consensus 91 ~~VPValHLDHg 102 (350)
T PRK09197 91 YGVPVILHTDHC 102 (350)
T ss_pred CCCCEEEECCCC
Confidence 999988765443
No 126
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=62.28 E-value=38 Score=28.17 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccc--cccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKR--ALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~--~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+++.+.-+-..-..+ +...+|++.|++.+..+||=.+.+.-.... ..+-.....++.+.++||.+--..
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDH 84 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDH 84 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345556667777666555555 688999999999999999988876432221 233456778888999999886443
No 127
>PRK13059 putative lipid kinase; Reviewed
Probab=61.51 E-value=82 Score=25.96 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 189 (197)
.++++...+.+.|.++...... ..-.+...+.+ +.++|.||+. .+.+. +..++..++.. .++|+-++|-.
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~-GGDGT-----v~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDI-DESYKYILIA-GGDGT-----VDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHh-hcCCCEEEEE-CCccH-----HHHHHHHHHhcCCCCcEEEECCC
Confidence 3455667777778776543333 22223333333 4577877664 33232 24455666643 46899999854
No 128
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=61.09 E-value=16 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+.+++.+ ++|+||+|-.+. +.+...+.-.-..+.+++++||++.|.+-
T Consensus 163 ~~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIE--KADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 35677888888 799999997653 34433333333444666789999999875
No 129
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=61.05 E-value=81 Score=26.32 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=26.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
+++|++.+.-+|.-++..+.+ . .+.++.++|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~---~------------lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHK---A------------IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHH---H------------hCCcEEEEEecCC
Confidence 488999999888877766544 2 3457999999765
No 130
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=60.88 E-value=94 Score=25.64 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
.++.+.+.... .+++-..+-..+.. -++.+.|++.++|.|++...........-+-..-..|+..+ +.||++...+
T Consensus 59 ~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 59 IFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 44444444432 34544444333443 45558899999999999776544333222223345566666 6999999765
Q ss_pred C
Q 044973 190 P 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 138 ~ 138 (290)
T TIGR00683 138 F 138 (290)
T ss_pred c
Confidence 4
No 131
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=60.77 E-value=97 Score=25.71 Aligned_cols=84 Identities=11% Similarity=0.091 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-..++..+..+|-.+...- . .++++.+|-...+
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~------------~~~~i~~visn~~--------------------------- 127 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-E------------LPMDIVGVVSNHP--------------------------- 127 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-C------------CCcEEEEEEECCc---------------------------
Confidence 34689888888877777766554332 2 3456555533222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec-C---ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT-G---DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g---~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+...+++.|+++...... . +....+.+..++.++|++|+....
T Consensus 128 -----------~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 128 -----------DLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred -----------cHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChh
Confidence 0233367778987753211 1 234567888889999999998543
No 132
>PRK13054 lipid kinase; Reviewed
Probab=60.70 E-value=82 Score=25.96 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEECCC
Q 044973 114 LSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIVKPP 189 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 189 (197)
+.++...+.+.|+.++..... ..-..++.+.+...++|.||+...+ +.+ ..++..++.. ..+|+-++|-.
T Consensus 20 ~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl-----~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 20 LREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGD-GTI-----NEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCc-cHH-----HHHHHHHHhhccCCCCcEEEEeCC
Confidence 334455677778887764443 2345566665555678888765333 322 3455556543 35789999864
No 133
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=60.59 E-value=77 Score=24.55 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=16.8
Q ss_pred EEEEEeCCChhhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALD 48 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~ 48 (197)
+++|.+.+..+|..++..+..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~ 21 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE 21 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH
Confidence 478889999888888876665
No 134
>PRK04527 argininosuccinate synthase; Provisional
Probab=60.38 E-value=1.2e+02 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
....+.+.|++.++|.|+-|+.+.
T Consensus 97 ~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 97 IVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHHHCCCCEEEecCcCC
Confidence 457889999999999999999754
No 135
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=59.94 E-value=78 Score=24.94 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEEecCC------------hHHHHHHHHHH-cCCCEEEEecCCCCcccc-cccccHHHH
Q 044973 110 SAALLSRALQICKD-KNVKAETLVLTGD------------PKDMICQAAEQ-MHMDLLVVGSRGLGKIKR-ALLGSVSDY 174 (197)
Q Consensus 110 ~~~~l~~~~~~~~~-~gi~~~~~v~~g~------------~~~~I~~~a~~-~~~dliViG~~~~~~~~~-~~~gs~~~~ 174 (197)
+...++++.+.+.. .|++++......+ ....|++..+. ...|.|++-..-...-.. ++=+-+.+.
T Consensus 108 a~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~e 187 (204)
T PF04459_consen 108 AYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEE 187 (204)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHH
Confidence 34567777777722 3666665544322 35566655554 334899998754433223 344678889
Q ss_pred HHhhCCCCEEEECCCC
Q 044973 175 CAHHVQCPIIIVKPPP 190 (197)
Q Consensus 175 il~~~~~pVlvv~~~~ 190 (197)
+....++||.+|+.+.
T Consensus 188 l~~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 188 LEERLGVPVIVVRGPG 203 (204)
T ss_pred HHHHhCCcEEEeCCCC
Confidence 9999999999998754
No 136
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=59.88 E-value=54 Score=27.30 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c-ccccccHHHHHHhhC--CCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K-RALLGSVSDYCAHHV--QCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~-~~~~gs~~~~il~~~--~~pVlvv~~~ 189 (197)
.++...+++.+.-+-.....+ ....++++.|++.+..+|+.-+.+.... . -..+.........++ .+||.+-=..
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 7 KELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCC
Confidence 344555666666665555555 6889999999999999999877654322 1 224567778888899 8898875443
No 137
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=59.87 E-value=48 Score=27.41 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c-ccccccHHHHHHhhCC-CCEEEECC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K-RALLGSVSDYCAHHVQ-CPIIIVKP 188 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~-~~~~gs~~~~il~~~~-~pVlvv~~ 188 (197)
++...+++.+.-+-.....+ ...+++++.|++.+..+|+.-+.+.-.. . ...+......+..+++ +||.+--.
T Consensus 6 ~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 6 EILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC
Confidence 34455566666555544444 6889999999999999999877654222 1 1235667788888888 89887644
No 138
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=59.73 E-value=90 Score=25.82 Aligned_cols=76 Identities=18% Similarity=0.104 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
.++.+.+... ..+++-..+-..+..+. +.+.|++.++|.+++...........-+-..-..|+..+ +.||++..-+
T Consensus 58 l~~~~~~~~~-g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 58 AIENAIDQIA-GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred HHHHHHHHhC-CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 4444444333 23555444433344444 557899999999999887654443322334455678888 7999999654
No 139
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.49 E-value=67 Score=23.45 Aligned_cols=67 Identities=9% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-C-CCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-V-QCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~-~~pVlvv 186 (197)
+...++..|+++.. +-...+.+.|.+.|.+.++|+|.+.+....... .+..+.+.+-.. . .++|++-
T Consensus 23 v~~~lr~~G~eVi~-LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~--~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 23 LDRALTEAGFEVIN-LGVMTSQEEFIDAAIETDADAILVSSLYGHGEI--DCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcCccccCHH--HHHHHHHHHHhcCCCCCeEEEE
Confidence 44566677777655 222468999999999999999999875543322 224444544333 2 2444443
No 140
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=59.39 E-value=96 Score=25.44 Aligned_cols=76 Identities=17% Similarity=0.077 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+. ..+.+-..+...+. .-+..+.|++.++|-+++...........-+-..-..|+..++.||++...+
T Consensus 59 ~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 59 LIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 4444444443 23455444443344 3445577889999999997665433332222344566777889999999654
No 141
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=59.15 E-value=1.2e+02 Score=26.45 Aligned_cols=63 Identities=11% Similarity=0.232 Sum_probs=46.8
Q ss_pred ceEEEEecC--ChHHHHHHHHHHcCCCEEEEecC--CCCcccccccccHHHHHHhhC---CCCEEEECCC
Q 044973 127 KAETLVLTG--DPKDMICQAAEQMHMDLLVVGSR--GLGKIKRALLGSVSDYCAHHV---QCPIIIVKPP 189 (197)
Q Consensus 127 ~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~--~~~~~~~~~~gs~~~~il~~~---~~pVlvv~~~ 189 (197)
+++.++... ...+++..++++.++..+|+|.. +...-...++.+++.++.++- +-|++++-..
T Consensus 247 ~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsGG 316 (422)
T COG2379 247 NVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSGG 316 (422)
T ss_pred cceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 455555544 47789999999999999999985 333333457788999888887 6899888654
No 142
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=59.01 E-value=33 Score=24.84 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC----CcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL----GKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~----~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
...+.|.+.+++.+++.||+|-.-. ........-..++.|-...+.||..+-...
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 3578899999999999999994322 111122334567777777789999987653
No 143
>PRK13055 putative lipid kinase; Reviewed
Probab=58.79 E-value=1e+02 Score=25.93 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEEC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVK 187 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~ 187 (197)
.+.+.++...+.+.|+.++...... .-...+.+.+.+.++|+||+..-+ +.+ ..++..++.. ...|+-++|
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGD-GTl-----~evvngl~~~~~~~~LgiiP 92 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGD-GTI-----NEVVNGIAPLEKRPKMAIIP 92 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCC-CHH-----HHHHHHHhhcCCCCcEEEEC
Confidence 3455667777888888887655542 345666666666678888775332 222 3344555432 346788888
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 93 ~G 94 (334)
T PRK13055 93 AG 94 (334)
T ss_pred CC
Confidence 54
No 144
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=58.72 E-value=93 Score=24.88 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
+.+.++++...+.+ ++...+. |....+-...+.+-++|.+|.|+.
T Consensus 155 ~Ki~~lr~~~~~~~-~~~IeVD-GGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 155 EKIRELRAMIDERL-DILIEVD-GGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHHHhcccC-CeEEEEe-CCcCHHHHHHHHHcCCCEEEEEEE
Confidence 34445555555555 6666665 445455555566669999999984
No 145
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.44 E-value=81 Score=25.72 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.++.+.+.+. ..+.+-..+...+. .-++.+.|++.++|.|++...........-+-..-..|+..+++||++...+
T Consensus 57 ~l~~~~~~~~~-~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 57 AVIEAVVEAVN-GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHhC-CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 34444444443 23443333322233 4455577899999999998765433332222244566777889999998654
No 146
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=58.42 E-value=58 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEec-----------C-ChHHHHHHHHHHcCCCEEEEec
Q 044973 110 SAALLSRALQICKDKNVKAETLVLT-----------G-DPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~-----------g-~~~~~I~~~a~~~~~dliViG~ 157 (197)
.+..++++..+++..|+.+-..+.. | .-.++|...++..++|+||...
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 4567788888888888765432221 3 3579999999999999999974
No 147
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=58.26 E-value=21 Score=28.20 Aligned_cols=49 Identities=16% Similarity=-0.059 Sum_probs=36.9
Q ss_pred ccccccchhhhhhhHhhhhhccCCCCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 2 EAVEGAGLAMQRTKEEGEEMMGKNEMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~m~~~~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.|++|++.+..- .+....|...+.+|+|++|........|.....++..
T Consensus 121 ~f~egss~dpai--~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pl 169 (237)
T COG3510 121 LFIEGSSTDPAI--AEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPL 169 (237)
T ss_pred EEEeCCCCCHHH--HHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhH
Confidence 467888887542 2334455666789999999999999999888888777
No 148
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=58.12 E-value=36 Score=27.75 Aligned_cols=64 Identities=9% Similarity=0.277 Sum_probs=36.1
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|++++..... ++..+... ++|.|++|+..- +.+.. -.|+. .--+.++...||+++-+.
T Consensus 152 ~~L~~~gi~v~~i~d~-----~~~~~m~~-~vd~VliGad~v~~nG~v~n-k~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 152 KELAEAGIPVTLIPDS-----AVGYVMPR-DVDKVLIGADAVLANGGVVN-KVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp HHHHHTT-EEEEE-GG-----GHHHHHHC-TESEEEEE-SEEETTS-EEE-ETTHHHHHHHHHHTT-EEEEE--G
T ss_pred HHhhhcceeEEEEech-----HHHHHHHH-hCCeeEEeeeEEecCCCEee-hhhHHHHHHHHHhhCCCEEEEccc
Confidence 3445568887775542 25555552 599999999753 33332 24543 444777889999999553
No 149
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=57.96 E-value=59 Score=22.39 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+..+...+++.|.++... ......+.+.+.+++.++|+|.+...-...... .-.+++.+-...+...+++
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~--~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGISVSMTPNLPE--AKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH--HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH--HHHHHHHHHhcCCCCEEEE
Confidence 334566667778866642 222356999999999999999998743222221 2345555433344333333
No 150
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=57.64 E-value=41 Score=27.84 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCceE-EEEecCChHHHHHHHHHHcCCCEEEEecCC
Q 044973 112 ALLSRALQICKDKNVKAE-TLVLTGDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~-~~v~~g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..|+...+..++.|+++. ..+.+..-.+.|..+.++..+|++|+-.|.
T Consensus 115 ~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 477888888899999877 445556788999999999999999996654
No 151
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=57.56 E-value=1e+02 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
+.++++++.+..+|...+..+...... ....+-++||...
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~------------~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRP------------TRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcc------------cCCCeeEEEeCCC
Confidence 467899999999999999988877654 4567888988654
No 152
>PRK13337 putative lipid kinase; Reviewed
Probab=57.47 E-value=1.1e+02 Score=25.28 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 189 (197)
.+.++...+.+.|++++..... ..-...+.+.+.+.+.|+||+..-+ +.+ ..++..++.. .+.|+-++|-.
T Consensus 20 ~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl-----~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 20 NLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGD-GTL-----NEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCC-CHH-----HHHHHHHhhCCCCCcEEEECCc
Confidence 3445566677788887765544 3445555555555577877765332 222 3344444432 34688888854
No 153
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=57.37 E-value=97 Score=26.41 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...+++.|+.+......++ ..+.+.+.+++.++|.|| +|.... ..++..+......|++.||
T Consensus 44 ~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~IP 115 (366)
T PRK09423 44 VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT--------LDTAKAVADYLGVPVVIVP 115 (366)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH--------HHHHHHHHHHcCCCEEEeC
Confidence 446666677777776644334443 345667778888999887 442211 2334444445578999998
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 116 Tt 117 (366)
T PRK09423 116 TI 117 (366)
T ss_pred Cc
Confidence 64
No 154
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=57.14 E-value=94 Score=24.46 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHhhcCCceEEEEecC-----ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 118 LQICKDKNVKAETLVLTG-----DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g-----~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+.+++.|+++...-... .-..++.+..++.++|++|+....
T Consensus 42 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 42 AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcc
Confidence 456777889876432221 114678888899999999996543
No 155
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=57.13 E-value=72 Score=27.46 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c----c------------cccccHHHHH
Q 044973 114 LSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K----R------------ALLGSVSDYC 175 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~----~------------~~~gs~~~~i 175 (197)
+.++...+++.+.-+-..-... ....++++.|++.+..+|+..+.+.-.. . . ..+......+
T Consensus 15 ~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (357)
T TIGR01520 15 VHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSI 94 (357)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHH
Confidence 3344455666666665555555 6889999999999999999887654211 1 0 1145677888
Q ss_pred HhhCCCCEEEECCCCC
Q 044973 176 AHHVQCPIIIVKPPPK 191 (197)
Q Consensus 176 l~~~~~pVlvv~~~~~ 191 (197)
+.++++||.+-=....
T Consensus 95 Ae~a~VPValHLDHg~ 110 (357)
T TIGR01520 95 AEHYGVPVVLHTDHCA 110 (357)
T ss_pred HHHCCCCEEEECCCCC
Confidence 9999999987654443
No 156
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=56.49 E-value=50 Score=29.17 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEec
Q 044973 98 VEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~ 157 (197)
....+++...+...++++++.+.++..|..+...-...+..+.|.+.+++.+..-|+.|.
T Consensus 37 ~~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 37 LVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 344556666677788899999989888887777444446778889999999999999984
No 157
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=56.40 E-value=20 Score=29.86 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCccc-ccccccHHHHHHhhCCCCEEEE
Q 044973 114 LSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIK-RALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~-~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.++.+.+++.+.-+=.....+ ....++++.|++.+..+|+.-+.+..... -..+......+.+++++||.+-
T Consensus 5 ~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 5 MKELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 3444555566666666555555 68899999999999999988876543222 2356778899999999999763
No 158
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=56.19 E-value=1.4e+02 Score=27.45 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.7
Q ss_pred cCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 124 KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 124 ~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.|...-..+..|....+-+++|++.++|+||+..|..
T Consensus 126 ~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 126 RGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCC
Confidence 4666666677787788888999999999999987743
No 159
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=56.15 E-value=48 Score=27.86 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEEEECC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+++.+ ++|+||+|-... +.+...+.=.-..+.|++++.|++.|-|
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 46778888888 799999996543 4444444444455567888999998876
No 160
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=55.92 E-value=1.6e+02 Score=26.63 Aligned_cols=69 Identities=14% Similarity=0.354 Sum_probs=43.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---Cccccccccc-HHHHHHhhCCCCEEEECCCCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGS-VSDYCAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs-~~~~il~~~~~pVlvv~~~~~~ 192 (197)
..+.+.+.|+++.+....+ ...|+ ..++-|++|+|.- +.+-.. .|. ...-+.++..+|||++=...+.
T Consensus 402 ~lr~Lv~~GinctYv~I~a--~syim-----~evtkvfLGahailsNG~vysR-~GTa~valvAna~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 402 LLRRLVDRGINCTYVLINA--ASYIM-----LEVTKVFLGAHAILSNGAVYSR-VGTACVALVANAFNVPVLVCCEAYKF 473 (556)
T ss_pred HHHHHHHcCCCeEEEEehh--HHHHH-----HhcceeeechhhhhcCcchhhh-cchHHHHHHhcccCCCEEEEechhhh
Confidence 3455667799999866543 33344 2578999999863 222222 243 3444666778999999765544
Q ss_pred C
Q 044973 193 H 193 (197)
Q Consensus 193 ~ 193 (197)
+
T Consensus 474 ~ 474 (556)
T KOG1467|consen 474 H 474 (556)
T ss_pred h
Confidence 3
No 161
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.51 E-value=1.4e+02 Score=26.17 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=57.5
Q ss_pred EEeCCChhhHHHHHHHHHHh-ccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHH
Q 044973 31 VALDESGESFYALKWALDNL-FGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEEN 109 (197)
Q Consensus 31 v~~d~s~~s~~al~~a~~la-~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
+.-.+..-+..+...|..++ .. .+.++.++...+. ..
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~------------~g~~V~li~~D~~-----------------------------r~- 264 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLY------------GKKKVALITLDTY-----------------------------RI- 264 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc------------CCCeEEEEECCcc-----------------------------HH-
Confidence 33345566777778888877 44 4567777754221 00
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC--CC-EEEE
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ--CP-IIIV 186 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~--~p-Vlvv 186 (197)
...+++..+.+..|+++.......+....|-. ..++|+|++-+.++........ .....++..+. .. .||+
T Consensus 265 --~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~-~~L~~ll~~~~~~~~~~LVl 338 (424)
T PRK05703 265 --GAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLI-EELKALIEFSGEPIDVYLVL 338 (424)
T ss_pred --HHHHHHHHHHHHhCCceEccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHH-HHHHHHHhccCCCCeEEEEE
Confidence 11244445555567776543322233333332 2369999999888765443222 22334444332 23 5555
Q ss_pred CC
Q 044973 187 KP 188 (197)
Q Consensus 187 ~~ 188 (197)
+.
T Consensus 339 ~a 340 (424)
T PRK05703 339 SA 340 (424)
T ss_pred EC
Confidence 54
No 162
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=55.40 E-value=65 Score=27.65 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCC-CCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
++...+++.+.-+-.....+ ....+|++.|++.+..+|+..+.+.... ...++......++.+++ +||-+-=..
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDH 82 (347)
T TIGR01521 6 QLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDH 82 (347)
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 44455666666665555555 6889999999999999999987764322 22345677888888886 899875443
No 163
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=55.20 E-value=65 Score=27.61 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCccc-ccccccHHHHHHhhCC-CCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIK-RALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~-~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
.++...+.+.+.-+-...... ....+|++.|++.+..+|+..+.+..... ..++......+..+++ +||.+-=..
T Consensus 7 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDH 84 (347)
T PRK13399 7 RQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDH 84 (347)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 344455666666665555554 68899999999999999998876543222 2346677888888885 898875443
No 164
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=55.11 E-value=39 Score=26.66 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 141 ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
+...+.+.+.|.|++|.+. .....-+..+...+=++.+.||++.|....
T Consensus 16 ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 4456667789999998653 122222344555554557899999876543
No 165
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=54.98 E-value=1.3e+02 Score=26.98 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
....-..+-|..+.+.+.+.|++.- +..|++...|.+++++.+++-|+....- ....+. .......-+....+-+.
T Consensus 48 ~~~~Fl~~sL~~L~~~L~~~gi~L~--v~~~~~~~~l~~~~~~~~~~~v~~n~~~-~~~~~~-rD~al~~~l~~~gi~~~ 123 (461)
T COG0415 48 RHAAFLLQSLQALQQSLAELGIPLL--VREGDPEQVLPELAKQLAATTVFWNRDY-EEWERQ-RDAALAQPLTEVGIAVH 123 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceE--EEeCCHHHHHHHHHHHhCcceEEeeeee-chhHHH-HHHHHHHHHHhcCceEE
Confidence 3445556667777777777776654 4679999999999999998777776443 322221 12334444555555555
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
.+.
T Consensus 124 ~~~ 126 (461)
T COG0415 124 SFW 126 (461)
T ss_pred Eec
Confidence 443
No 166
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.89 E-value=1.1e+02 Score=25.24 Aligned_cols=73 Identities=14% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.++...+... ..+++-..+-. +. .-++.+.|++.++|.+++-.........--+-..-..|+..++.||++..
T Consensus 58 l~~~~~~~~~-~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 58 VVRAAVEETA-GRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred HHHHHHHHhC-CCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3444444432 23555544433 43 34455788999999999976554433222222344567778899999996
No 167
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=54.72 E-value=81 Score=26.56 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC---ChHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG---DPKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g---~~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.+ .+...+... +..+.+.+.+++.++|.|| +|.-. ...++..+.....+|++.||-
T Consensus 40 ~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs--------~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 40 AGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGR--------VIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCch--------HHHHHHHHHHhcCCCEEEecC
Confidence 4455556666666 554433322 2356677777888899888 55222 134455555566799999996
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 111 T 111 (339)
T cd08173 111 A 111 (339)
T ss_pred c
Confidence 4
No 168
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=54.71 E-value=43 Score=27.82 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCCceEEEE-ecCChHHHHHHHHHHcCCCEEEEecCC
Q 044973 112 ALLSRALQICKDKNVKAETLV-LTGDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v-~~g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..|+...+..++.|+++.-.. .+..-.+.|.++.++..+|+||+-.|.
T Consensus 116 ~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 478888888999999887544 456788999999999999999996654
No 169
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=54.70 E-value=59 Score=27.87 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=45.1
Q ss_pred HHHhhcCCceEEEEecCC---------hHHHHHHHHHHcCCCEEEEecC-CCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 119 QICKDKNVKAETLVLTGD---------PKDMICQAAEQMHMDLLVVGSR-GLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~---------~~~~I~~~a~~~~~dliViG~~-~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
..+.+ +.++-..+.+|| ..+.|++++++.++|++|.|-. ..++. ...-|.++..|-.+..+|++.-
T Consensus 42 ~~l~~-~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrY-G~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 42 KALKD-DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRY-GVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHhcC-CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchH-HHHHHHHHHHHHHhhCCCEEEE
Confidence 34444 455555555653 4678899999999999999953 22222 2345788888888999999865
No 170
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=54.42 E-value=28 Score=26.94 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=23.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
+||++++.++-.+.++.+.+..|.+.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~ 27 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDV 27 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 69999999999999999988888775
No 171
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=54.29 E-value=73 Score=27.72 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=26.7
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEE
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVH 73 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~ 73 (197)
|+|||++.+|-.+.++++.+..|-+ .++.+.++-
T Consensus 5 k~ill~v~gsiaayk~~~l~r~L~~-------------~ga~v~vvm 38 (392)
T COG0452 5 KRILLGVTGSIAAYKSVELVRLLRR-------------SGAEVRVVM 38 (392)
T ss_pred ceEEEEecCchhhhhHHHHHHHHhh-------------CCCeeEEEc
Confidence 6999999999998999887766644 477777663
No 172
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=54.24 E-value=32 Score=28.99 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-Ccccc-cccccHHHHHHhhCCCCEEEECCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIKR-ALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~~-~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+....+++.+ ++|+||+|-.+. +.+.. ++...+.+ .+++++||++.|.+-.
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~gI~e-AI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSLYTSIIPNLLVPEIAE-ALRESKAPKVYVCNLM 214 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhchhcCchhHHH-HHHhCCCCEEEEeCCC
Confidence 45677888888 899999997653 44433 34444544 5577899999998753
No 173
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=54.23 E-value=1.1e+02 Score=25.05 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-..+-..+.. -++.+.|++.++|.+++..........--+-..-..|...++.||++...+
T Consensus 56 ~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 56 VIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 34444444432 34444433322333 345577889999999998765443332222234455777889999998654
No 174
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=54.06 E-value=76 Score=28.90 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHH---HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQA---AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~---a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.+.+...+.+.+..++..+..+...+.+-.. ....++|+||-. |+++..|-.+.+.||+-|+..
T Consensus 25 l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s 92 (538)
T PRK15424 25 LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 92 (538)
T ss_pred HHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEecCC
Confidence 44455566666666666665555444433333 445578988853 678888888889999999865
Q ss_pred C
Q 044973 190 P 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 93 ~ 93 (538)
T PRK15424 93 G 93 (538)
T ss_pred H
Confidence 4
No 175
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.64 E-value=69 Score=26.70 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c-ccccccHHHHHHhhC--CCCEEEECC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K-RALLGSVSDYCAHHV--QCPIIIVKP 188 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~-~~~~gs~~~~il~~~--~~pVlvv~~ 188 (197)
.++...+++.+.-+-..-..+ ....++++.|++.+..+|+.-+.+.... . -..+......++.++ ..||.+-=.
T Consensus 7 ~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLD 85 (293)
T PRK07315 7 EKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLD 85 (293)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 344455666666555555555 6889999999999999999877654222 2 123466777888888 568876533
No 176
>PRK02929 L-arabinose isomerase; Provisional
Probab=53.61 E-value=86 Score=28.29 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhhc-CCceEEEEecC--ChHHHHHHHHHHcC----CCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 109 NSAALLSRALQICKDK-NVKAETLVLTG--DPKDMICQAAEQMH----MDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~-gi~~~~~v~~g--~~~~~I~~~a~~~~----~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
+..+.-+++.+.+... .+.++.. ..+ +..+.|...+++.+ +|.||+-.+..+.- +..-.+++..++
T Consensus 26 ~~~~~~~~i~~~l~~~~~~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~ 98 (499)
T PRK02929 26 QVAEHAEEIVDGLNASGKLPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPA------KMWIRGLSALQK 98 (499)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchH------HHHHHHHHHcCC
Confidence 3333344444555443 3455554 333 45666667777766 99999988877643 344456888999
Q ss_pred CEEEECC
Q 044973 182 PIIIVKP 188 (197)
Q Consensus 182 pVlvv~~ 188 (197)
|||+...
T Consensus 99 PvL~~~~ 105 (499)
T PRK02929 99 PLLHLHT 105 (499)
T ss_pred CEEEEec
Confidence 9999976
No 177
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=52.97 E-value=34 Score=29.34 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG 135 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g 135 (197)
+.....+.++...+.+..+ ...+..|
T Consensus 23 ~d~~~~f~~~l~~a~~~~v--D~vliAG 48 (390)
T COG0420 23 EDQKKAFDELLEIAKEEKV--DFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHHHHHHccC--CEEEEcc
Confidence 3444445555555554333 3334443
No 178
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=52.38 E-value=89 Score=25.85 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCCCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~~~ 191 (197)
...+.+.|+++..... +..-.+ .. .+|.+++|+..- +..-. -.|.. .--+.++..+|++++-+..+
T Consensus 153 a~eL~~~GI~vtlI~D--sa~~~~---m~--~vd~VivGAD~I~~nG~v~N-KiGT~~lA~~Ak~~~vPfyV~a~~~k 222 (275)
T PRK08335 153 ANELEFLGIEFEVITD--AQLGLF---AK--EATLALVGADNVTRDGYVVN-KAGTYLLALACHDNGVPFYVAAETFK 222 (275)
T ss_pred HHHHHHCCCCEEEEec--cHHHHH---HH--hCCEEEECccEEecCCCEee-hhhHHHHHHHHHHcCCCEEEECccce
Confidence 4555666888886543 222223 33 399999999753 22222 24554 34466788899999966443
No 179
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=52.34 E-value=87 Score=26.48 Aligned_cols=68 Identities=9% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCceEEEE-ecCCh----HHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 114 LSRALQICKDKNVKAETLV-LTGDP----KDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v-~~g~~----~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+++.+.+++.|+.+.... ..+++ .+.+.+.+++.++|.|| +|...- -.++..+.....+|++.||
T Consensus 38 ~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~--------~D~aK~ia~~~~~p~i~VP 109 (345)
T cd08171 38 KDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA--------IDTVKVLADKLGKPVFTFP 109 (345)
T ss_pred HHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH--------HHHHHHHHHHcCCCEEEec
Confidence 5556666777788765332 33443 45666777888999988 552221 1334444444578999999
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 110 Tt 111 (345)
T cd08171 110 TI 111 (345)
T ss_pred Cc
Confidence 64
No 180
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=52.23 E-value=78 Score=26.34 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-c-ccccccHHHHHHhhCC--CCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-K-RALLGSVSDYCAHHVQ--CPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~-~~~~gs~~~~il~~~~--~pVlvv~~~ 189 (197)
++.+.+++.+.-+-..-... ....++++.|++.+..+|+.-+.+.... . -..+......+..+++ .||.+-=..
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDH 86 (286)
T PRK08610 8 EMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDH 86 (286)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 44455666666555544444 6889999999999999999887654322 2 1235677888888887 788775443
No 181
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.99 E-value=65 Score=28.55 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=34.7
Q ss_pred C-ChHHHHHHHHH---HcC-CCEEEEecCCCCcccc-cccc-cHHHHHHhhCCCCEEEECCC
Q 044973 135 G-DPKDMICQAAE---QMH-MDLLVVGSRGLGKIKR-ALLG-SVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 135 g-~~~~~I~~~a~---~~~-~dliViG~~~~~~~~~-~~~g-s~~~~il~~~~~pVlvv~~~ 189 (197)
| +...+|++..+ +.+ +|+||+|..| +.++. |.|. ...-+-+..|+.||+--=..
T Consensus 174 G~~A~~eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 174 GEGAAEEIVEAIERANQRGDVDVLIVARGG-GSIEDLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred CCCcHHHHHHHHHHhhccCCCCEEEEecCc-chHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence 5 56777776644 444 9999999766 44544 3333 34556777889999865433
No 182
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=51.95 E-value=77 Score=21.87 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC--CCEEEE
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ--CPIIIV 186 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~--~pVlvv 186 (197)
.-+...+++.|..+... ....+.+.+.+.+.+.++|+|.+......... .-.....+.+..+ +++++-
T Consensus 17 ~~~~~~l~~~G~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~---~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 17 NIVAIALRDNGFEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALSTTHME---AMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHHHCCCEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecchHhHHH---HHHHHHHHHHhcCCCCeEEEe
Confidence 34455577778876654 23457889999999999999999876543321 1234556666665 555554
No 183
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=51.69 E-value=51 Score=25.86 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHc---CCCEEEEecCC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQM---HMDLLVVGSRG 159 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~---~~dliViG~~~ 159 (197)
.+.++..++..|+.-...+..|+..+.|-+...+. .+|+|++-...
T Consensus 83 ~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 83 AEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 34455566667776556667799988888888765 59999998754
No 184
>PRK08392 hypothetical protein; Provisional
Probab=51.51 E-value=70 Score=25.03 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCc--ccccccccHHHHHHhhCCCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGK--IKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~--~~~~~~gs~~~~il~~~~~p 182 (197)
..++++.+.+.+.|+.+|.-.....|...+++.+.+.+. -+++|+..+.. +.. + ..+..++++++.+
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~vg~--~-~~a~~~~~~~g~~ 205 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDVGN--V-SWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHCCc--H-HHHHHHHHHcCCC
Confidence 455667777888888777655455677889999999986 58999876542 222 1 3467788887754
No 185
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=51.05 E-value=49 Score=21.92 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 119 QICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+++.|+++++.+.. +.-...+.+..+...+|+||--......... --|....+.+-...+|++
T Consensus 24 ~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~-~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 24 KFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPH-EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceec-cCcHHHHHHHHHcCCCee
Confidence 4455678887643322 2222458999999999999986543222111 124455556666666654
No 186
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=50.96 E-value=81 Score=21.87 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=40.5
Q ss_pred HHHhhcCCceEEEEecCC-hHHHHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 119 QICKDKNVKAETLVLTGD-PKDMICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+.+++.|++++....... -...|.+..++ ..+|+||--..+.......--|....+..-...+|++-
T Consensus 36 ~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 36 RVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 344567888887544311 23568888888 89999988654332111112355556666666888764
No 187
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=50.84 E-value=1.3e+02 Score=24.91 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.++.+.+.... .+++-..+- .+.. -++.+.|++.++|.+++-..........-+-..-..|+..++.||++..
T Consensus 63 v~~~~~~~~~g-~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 63 VVEIAVSTAKG-KVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHhCC-CCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 44444443322 345444443 2333 3456788899999999976554333322223345567778899999986
No 188
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=50.79 E-value=1.6e+02 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~ 160 (197)
...+.+.|++.++|.|+.|.+..
T Consensus 105 ~~~l~~~A~~~g~~~IATGH~a~ 127 (346)
T PRK00143 105 FKAFLEYARELGADYIATGHYAR 127 (346)
T ss_pred HHHHHHHHHHCCCCEEEeeeecc
Confidence 35677899999999999998654
No 189
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=50.79 E-value=27 Score=29.20 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
+....+++.+ ++|+||+|-... +.+...+.-.-....++++++|++.|.+--.
T Consensus 173 ~~p~~l~AI~--~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni~~ 226 (300)
T PF01933_consen 173 ANPEALEAIE--EADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNIMT 226 (300)
T ss_dssp B-HHHHHHHH--H-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SSB-
T ss_pred CCHHHHHHHH--hCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCCCC
Confidence 5577788888 799999997553 4454444444455677788899999987543
No 190
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=50.34 E-value=86 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.++..+-..++..+.|||++|-..
T Consensus 101 ~vAKiLk~~vekek~~lVllGKQA 124 (254)
T KOG3180|consen 101 HVAKILKKLVEKEKSDLVLLGKQA 124 (254)
T ss_pred HHHHHHHHHHHhhcCCEEEEcccc
Confidence 567888889999999999999753
No 191
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=50.21 E-value=93 Score=25.41 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=40.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccHH-HHHHhhCCCCEEEECCCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVS-DYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~-~~il~~~~~pVlvv~~~~~ 191 (197)
....+.+.|+++.... .+. +..+.. .+|.+++|++.- +..-. -.|+.. .-+.++...||+++-...+
T Consensus 126 ~a~~L~~~GI~vtli~--Dsa---~~~~m~--~vd~VlvGAd~V~~nG~v~n-kvGT~~~Al~A~~~~vPv~V~~~s~K 196 (253)
T PRK06372 126 MAKLLVKSGIDVVLLT--DAS---MCEAVL--NVDAVIVGSDSVLYDGGLIH-KNGTFPLALCARYLKKPFYSLTISMK 196 (253)
T ss_pred HHHHHHHCCCCEEEEe--hhH---HHHHHH--hCCEEEECccEEecCCCEee-hhhHHHHHHHHHHcCCCEEEEeeccc
Confidence 4445556789886533 222 222333 599999999863 22322 345544 4455888899999865433
No 192
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=50.01 E-value=90 Score=24.91 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~i 175 (197)
.+.++.+.+++.|+++-.-+-.+.+.+.|..+.. .+|+|.+-+-..+...+.+..+..++|
T Consensus 98 ~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PGf~GQ~fi~~~l~KI 158 (223)
T PRK08745 98 HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPGFGGQAFIPSALDKL 158 (223)
T ss_pred cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccccHHHHHHH
Confidence 3556778888889988887877889999999998 789888877666655665666555554
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.80 E-value=1.9e+02 Score=25.68 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=25.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHH---HHHHHHHcCCCEEEEecCCCCccccc
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDM---ICQAAEQMHMDLLVVGSRGLGKIKRA 166 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~---I~~~a~~~~~dliViG~~~~~~~~~~ 166 (197)
+..++...++++.......++... .++.++ ..|+||+-+.++......
T Consensus 142 L~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~ 192 (437)
T PRK00771 142 LKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEED 192 (437)
T ss_pred HHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHH
Confidence 334445556665432222344433 333344 459999988887655433
No 194
>PLN02858 fructose-bisphosphate aldolase
Probab=49.71 E-value=64 Score=32.93 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH
Q 044973 96 SSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174 (197)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~ 174 (197)
++......+.+....+..+.++...+++.+.-+-.....+ ....++++.|++.+..+|+.-+.+.-.....-+......
T Consensus 1084 ~~tL~~~~~~l~~~~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~ 1163 (1378)
T PLN02858 1084 STALAEVVKSWARPARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIA 1163 (1378)
T ss_pred hHHHHHHHHHhcCcCCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHH
Confidence 4444455555555555667777777888887776666665 688999999999999999987765322122224566777
Q ss_pred HHhhCCCCEEEECCC
Q 044973 175 CAHHVQCPIIIVKPP 189 (197)
Q Consensus 175 il~~~~~pVlvv~~~ 189 (197)
+++++.+||.+-=..
T Consensus 1164 ~a~~~~vpV~lHLDH 1178 (1378)
T PLN02858 1164 AAEQASVPITVHFDH 1178 (1378)
T ss_pred HHHHCCCCEEEECCC
Confidence 889999999876443
No 195
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=49.61 E-value=83 Score=26.91 Aligned_cols=68 Identities=12% Similarity=0.249 Sum_probs=42.2
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCCCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~~~ 191 (197)
...+.+.|+++.... .+. +........+|.|++|+..- +..-. -.|+. ..-+.++..+|++++-+..+
T Consensus 199 a~eL~~~GI~vtlI~--Dsa---~~~~M~~~~vd~VivGAd~I~~nG~v~N-kiGT~~lAl~Ak~~~vPfyV~a~~~k 270 (344)
T PRK05720 199 AWELYQAGIDVTVIT--DNM---AAHLMQTGKIDAVIVGADRIAANGDVAN-KIGTYQLAIAAKYHGVPFYVAAPSST 270 (344)
T ss_pred HHHHHHCCCCEEEEc--ccH---HHHHhcccCCCEEEEcccEEecCCCEee-hhhHHHHHHHHHHhCCCEEEeccccc
Confidence 344566788887644 322 33334445799999999763 22222 34554 34456788899999876543
No 196
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.39 E-value=2.1e+02 Score=26.06 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
.++.+-+++|+..++|.|.|-+-++..-...++++.+.-+=-+-|--|+.|
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~v 503 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFV 503 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEe
Confidence 367788899999999999999988776666777777654433333334443
No 197
>PLN02285 methionyl-tRNA formyltransferase
Probab=49.29 E-value=1.4e+02 Score=25.41 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcCCCEEEEecCC
Q 044973 117 ALQICKDKNVKAETLVLTGD-PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..+.+.+.|+++........ -.+.+++..++.++|++|+...+
T Consensus 60 v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 60 VAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYG 103 (334)
T ss_pred HHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHhh
Confidence 44556677888553222222 13456677778899999998655
No 198
>PRK10481 hypothetical protein; Provisional
Probab=49.12 E-value=1.4e+02 Score=23.96 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHhhcCCceEEEEecC--ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 119 QICKDKNVKAETLVLTG--DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g--~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+.+...|..+....... ...+.+.+.++ ..++|+||+++-+.+. ...+.+-+..+.||+.
T Consensus 147 ~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 147 QKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEc
Confidence 33334477666433221 34456777777 5689999999988653 2346677788899875
No 199
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=49.08 E-value=49 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=30.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+...+++.|.++... -...+.+.+++.|.++++|+|.+.+--
T Consensus 21 v~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 21 LDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred HHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 334556767766541 123688999999999999999997644
No 200
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=49.07 E-value=75 Score=27.17 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=50.0
Q ss_pred HHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecC-CCCc-cc---------------ccccccHHHHHHhh
Q 044973 117 ALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSR-GLGK-IK---------------RALLGSVSDYCAHH 178 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~-~~~~-~~---------------~~~~gs~~~~il~~ 178 (197)
+.+.+++.+.-+-.....+ ....++++.|++.+..+|+..+. +... .. -..+...+..++.+
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 83 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEH 83 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHH
Confidence 3344556666665555555 67889999999999999998776 2211 11 12355677888889
Q ss_pred CCCCEEEECCC
Q 044973 179 VQCPIIIVKPP 189 (197)
Q Consensus 179 ~~~pVlvv~~~ 189 (197)
+.+||.+-=..
T Consensus 84 ~~VPV~lHLDH 94 (340)
T cd00453 84 YGVPVILHTDH 94 (340)
T ss_pred CCCCEEEEcCC
Confidence 99999876443
No 201
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=49.01 E-value=78 Score=26.54 Aligned_cols=64 Identities=16% Similarity=0.313 Sum_probs=39.8
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
...+.+.|+++..... +. +..... .+|.|++|++.- +..-. -.|+. ..-+.++...||+++-+.
T Consensus 164 a~~L~~~GI~vtlI~D--sa---v~~~m~--~vd~VivGAd~v~~nG~v~n-kiGT~~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 164 AKELAEYGIPVTLIVD--SA---VRYFMK--DVDKVVVGADAITANGAVIN-KIGTSQIALAAHEARVPFMVAAET 231 (310)
T ss_pred HHHHHHCCCCEEEEeh--hH---HHHHHH--hCCEEEECccEEecCCCEEe-HHhHHHHHHHHHHhCCCEEEeccc
Confidence 3455667888887553 22 222334 499999999763 22322 34543 444667888999998654
No 202
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=48.94 E-value=66 Score=26.93 Aligned_cols=67 Identities=12% Similarity=0.245 Sum_probs=40.9
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~~ 190 (197)
...+.+.|+++.... .+. +........+|.|++|+..- +..-. -.|+. .--+.++...||+++-+..
T Consensus 171 a~~L~~~gI~vtlI~--Dsa---~~~~m~~~~vd~VlvGAd~v~~nG~v~n-k~GT~~lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 171 AWELMQDGIDVTLIT--DSM---AAYFMQKGEIDAVIVGADRIARNGDVAN-KIGTYQLAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred HHHHHHCCCCEEEEC--hhH---HHHHccccCCCEEEEcccEEecCCCEeE-hhhHHHHHHHHHHhCCCEEEecccc
Confidence 344556788887644 222 33333345799999999753 22332 24544 4445688889999996543
No 203
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=48.90 E-value=1.7e+02 Score=25.08 Aligned_cols=36 Identities=22% Similarity=0.089 Sum_probs=26.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
-.++||.+.+.-+|.-++-++ .. .+.++.++|+...
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll----~k------------rG~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMM----MK------------RGCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHH----HH------------cCCeEEEEEEeCC
Confidence 379999999988887776544 33 3468999998743
No 204
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=48.78 E-value=1.1e+02 Score=25.55 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc--cccccccHHHHHHhhCC--CCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI--KRALLGSVSDYCAHHVQ--CPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~--~~~~~gs~~~~il~~~~--~pVlvv~~~ 189 (197)
.++...+++.+.-+-.....+ ....++++.|++.+..+|+-.+.+.... .-..+......++.++. .||.+-=..
T Consensus 7 ~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (285)
T PRK07709 7 KEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDH 86 (285)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 344455666666665555555 6789999999999999999887654322 12235677888888876 688765443
No 205
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=48.67 E-value=1.5e+02 Score=24.29 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 189 (197)
++...+++.|+.++..... ..-+.++.+.+...++|.||+. .+.+. +..++..++.. .++|+-++|-.
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGT-----i~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAG-GGDGT-----LREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEE-cCChH-----HHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 3444567778887765443 2445666665555678877654 33232 23455555543 34688888854
No 206
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.62 E-value=64 Score=23.40 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
+...++..|.++...-. ..+.+++++.|.+.++|.|++.+..-+... .+..+.+.+-.
T Consensus 22 v~~~l~~~GfeVi~lg~-~~s~e~~v~aa~e~~adii~iSsl~~~~~~--~~~~~~~~L~~ 79 (132)
T TIGR00640 22 IATAYADLGFDVDVGPL-FQTPEEIARQAVEADVHVVGVSSLAGGHLT--LVPALRKELDK 79 (132)
T ss_pred HHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcCchhhhHH--HHHHHHHHHHh
Confidence 44556666776654221 257789999999999999999776543333 23556665544
No 207
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.53 E-value=53 Score=25.75 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEec
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~ 157 (197)
...-+.++++++...+.|..+...+..| ....-+..+.+.++|.+|+|+
T Consensus 147 ~~~~~KI~~l~~~~~~~~~~~~I~vDGG-I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 147 PEVLEKIRELRKLIPENGLDFEIEVDGG-INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCGSEEEEESS-ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEECC-CCHHHHHHHHHcCCCEEEECH
Confidence 3344566677788888788888877655 333344444456999999996
No 208
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=48.52 E-value=77 Score=26.65 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=79.2
Q ss_pred CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 044973 34 DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAAL 113 (197)
Q Consensus 34 d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
....-...+.++++++.-....++.-|+.+++++-.++=||..+.+....+.+..-...+...--. .--...+...++.
T Consensus 44 s~~~l~~~~~r~~m~~~g~lS~Gi~lG~~tGFDSGstLDYVYrN~p~G~~~~GrliDr~yLnaiGW-rGIR~Rk~~l~~~ 122 (311)
T PF12147_consen 44 SPKGLYWRFQRASMRTGGRLSEGIRLGLETGFDSGSTLDYVYRNQPQGKGPLGRLIDRNYLNAIGW-RGIRQRKVHLEEL 122 (311)
T ss_pred CHHHhHHHHHHHHHHhccccccceeechhcCCCCcchHhHHhcCCCCCcchHHHHHHHhhhcccch-HHHHHHHHHHHHH
Confidence 444556677788888877777888899999999999999998876543332221100001100000 1224455667778
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCC--CEEEE
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHM--DLLVV 155 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~--dliVi 155 (197)
+.++...+...|-+++..-..+.....|++..++..- +-|.+
T Consensus 123 i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~L 166 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILL 166 (311)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEE
Confidence 8888888888888888877777777788888776554 55555
No 209
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.34 E-value=1.5e+02 Score=26.98 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=38.2
Q ss_pred HHhhcCCceEEEEecCChHHHHHHH---HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQA---AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~---a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+.+.+-..+..+..|+..+.+-.+ ....++|+||-. |+++..|-.+.+.||+-|+...
T Consensus 22 i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s~ 83 (526)
T TIGR02329 22 IAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKPTG 83 (526)
T ss_pred HHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecCCh
Confidence 3334333344555667665555543 445688988753 6777878888899999998654
No 210
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=48.26 E-value=82 Score=26.32 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
...+.+.|+++..... +. +..... .+|.+++|++.- +..-. -.|+. .--+.++...||+++-+.
T Consensus 159 a~~L~~~gI~vtlI~D--sa---~~~~m~--~vd~VivGad~v~~nG~v~n-kiGT~~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 159 AKELRDYGIPVTLIVD--SA---VRYFMK--EVDHVVVGADAITANGALIN-KIGTSQLALAAREARVPFMVAAET 226 (301)
T ss_pred HHHHHHCCCCEEEEeh--hH---HHHHHH--hCCEEEECccEEecCCCEEE-HHhHHHHHHHHHHhCCCEEEEccc
Confidence 4455677888887542 22 222334 499999999763 22322 24543 444667888999998653
No 211
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.09 E-value=1.5e+02 Score=24.24 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=57.6
Q ss_pred EEEEEeCC-C-hhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 28 KVMVALDE-S-GESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 28 ~ILv~~d~-s-~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++|-..+ + ++...++++|..+... +.++...+.++|........+.
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~-------------g~~~~r~~~~kpRTs~~s~~G~------------------ 75 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKEL-------------GVHMLRGGAFKPRTSPYSFQGL------------------ 75 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHc-------------CCCEEEEeeecCCCCCCccCCc------------------
Confidence 44444443 3 4556778888888665 4668888888865532111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
..+-+..+.+.+++.|+.+-+.+..-.-.+.+. +. +|++-+|++.-.
T Consensus 76 ----g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~----~~-vd~~kIga~~~~ 122 (266)
T PRK13398 76 ----GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA----DY-ADMLQIGSRNMQ 122 (266)
T ss_pred ----HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH----Hh-CCEEEECccccc
Confidence 134455566667888999988776655444443 33 688989887643
No 212
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=47.93 E-value=46 Score=26.79 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
...+.+++.+.+.+.|.|++|.+. . ...+..+...+-+..+.||++.|....
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~-~---~~~~d~vv~~ik~~~~lPvilfPg~~~ 70 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD-T---GVTLDNVVALIKRVTDLPVILFPGSPS 70 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST-H---CHHHHHHHHHHHHHSSS-EEEETSTCC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC-C---ccchHHHHHHHHhcCCCCEEEeCCChh
Confidence 345677777788899999999777 2 223455666666668999999987544
No 213
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.74 E-value=1.8e+02 Score=24.90 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=64.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
-++|.+++..-.-..-+.|.++-.. +-+|.+. .-+.+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~-------------g~~Vlla-A~DTF----------------------------- 178 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ-------------GKSVLLA-AGDTF----------------------------- 178 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC-------------CCeEEEE-ecchH-----------------------------
Confidence 4677888888777777777776544 4555444 22221
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHH---HHHHHHcCCCEEEEecCCCCccccccccc
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMI---CQAAEQMHMDLLVVGSRGLGKIKRALLGS 170 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I---~~~a~~~~~dliViG~~~~~~~~~~~~gs 170 (197)
.....+++..|.++.|+++-..-..+||+.-+ +++|+..++|+|++-+-++-.-...++..
T Consensus 179 --RAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~E 242 (340)
T COG0552 179 --RAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDE 242 (340)
T ss_pred --HHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHH
Confidence 22356677778888888877754333776444 45678889999999998876555555443
No 214
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=47.73 E-value=98 Score=26.06 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCC-CCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
++...+++.+.-+-.....+ ....++++.|++.+..+|+..+.+.... ....+......+..+++ .||.+-=..
T Consensus 7 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 83 (307)
T PRK05835 7 EILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDH 83 (307)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 44455566666665555555 6889999999999999999877654221 12234567777888886 999876443
No 215
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=47.61 E-value=1.2e+02 Score=24.90 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHH---HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQA---AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~---a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
..+.+.+...|+++..+...||-.+.|.+. +.+. +|+||+. .+.+.-.. .-+.+.+++-...|+.+
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~D---DiT~e~vAka~g~~lv~ 92 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHD---DLTAEAVAKALGRPLVL 92 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCcc---HhHHHHHHHHhCCCccc
Confidence 346677788899999988889766666654 4444 9999984 33322211 23556666666666654
No 216
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=47.53 E-value=1.4e+02 Score=26.21 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEe-cC--ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVL-TG--DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~-~g--~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
+..++..+++.+.+++.++++...-. .. +-...+++.++..++|.||+-....+.- +..-.+++..++|||
T Consensus 19 ~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~------~~~~~~~~~~~~Pvl 92 (452)
T cd00578 19 EQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA------KMWIAGLSELRKPVL 92 (452)
T ss_pred HHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH------HHHHHHHHhcCCCEE
Confidence 33444444455555554554432111 11 2345666777777899999976654422 233445677899999
Q ss_pred EECCCC
Q 044973 185 IVKPPP 190 (197)
Q Consensus 185 vv~~~~ 190 (197)
+.-...
T Consensus 93 l~a~~~ 98 (452)
T cd00578 93 LLATQF 98 (452)
T ss_pred EEeCCC
Confidence 997554
No 217
>PRK08005 epimerase; Validated
Probab=47.50 E-value=98 Score=24.47 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.+.+..+.+++.|.++-.-+-.+.+.+.|..+.. .+|+|.+-+-..+...+.+.....++|-
T Consensus 94 ~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~--~vD~VlvMsV~PGf~GQ~f~~~~~~KI~ 155 (210)
T PRK08005 94 NPSEILADIRAIGAKAGLALNPATPLLPYRYLAL--QLDALMIMTSEPDGRGQQFIAAMCEKVS 155 (210)
T ss_pred CHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH--hcCEEEEEEecCCCccceecHHHHHHHH
Confidence 3556777888889988887777889999999988 7898888776666666666665555554
No 218
>PRK00074 guaA GMP synthase; Reviewed
Probab=47.39 E-value=2e+02 Score=25.95 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=27.4
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|++.+.-+|.-++..+.+ . .+.++.++|+...
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~---~------------lg~~v~av~vd~g 251 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHK---A------------IGDQLTCVFVDHG 251 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHH---H------------hCCceEEEEEeCC
Confidence 6899999999888877765543 2 3457999999765
No 219
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=47.29 E-value=47 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+....+++.+ ++|+||+|-.+. +.+...+.-.-..+.+++++||.+.|.+-
T Consensus 164 ~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~ 216 (308)
T cd07187 164 KANPEALEAIE--EADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNL 216 (308)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecC
Confidence 35577888888 799999997654 44443333333444557889999999764
No 220
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=47.24 E-value=1.3e+02 Score=23.26 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEe----cCCCCcccccccccHHHHHHhhCC-CCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVG----SRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG----~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~ 188 (197)
+...+...+..++. +...+-.++.+..++...+|++++. -+..++. ...+.+..+.| ++|+++-.
T Consensus 16 l~~~L~~~~~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt~ 85 (207)
T PRK15411 16 LTGYLLSRGVKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFMA 85 (207)
T ss_pred HHHHHHhCCCcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEEC
Confidence 34444444444443 2233344445566777789999999 3332211 36777777666 89888843
No 221
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.11 E-value=56 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.4
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
..++..|.++-. .-...+.+.+++.|.++++|+|.+.+-
T Consensus 21 ~~L~~~GfeVid-LG~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 21 HAFTEAGFNVVN-LGVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred HHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 355666766543 112368899999999999999999764
No 222
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=46.91 E-value=1.7e+02 Score=24.31 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.++.+.+.+.. .+++-..+- ++.. -...+.+++.++|-+++...........-+-..-..|...++.||++...
T Consensus 65 ~~~~~~~~~~~-~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 65 VVRAAVETTAG-RVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred HHHHHHHHhCC-CCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 44444444422 355554443 2433 34457788999999999766544333222334456678888999999964
No 223
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=46.73 E-value=1.8e+02 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~ 159 (197)
....+.++|.+.++.+|+.|...
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCH
Confidence 34667789999999999999764
No 224
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=45.71 E-value=94 Score=26.78 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccHH-HHHHhhCCCCEEEECC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVS-DYCAHHVQCPIIIVKP 188 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~-~~il~~~~~pVlvv~~ 188 (197)
.+.+.|+++..... + ++..+..+..+|.||+|+++- +..- .-+|... .-+.++...|++++-|
T Consensus 214 eL~~~GI~vtlI~D--s---av~~~M~~~~Vd~VivGAd~I~~nG~v~-NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 214 EYHYDGIPLKLISD--N---MAGFVMQQGKVDAIIVGADRIVANGDFA-NKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHCCCCEEEEeh--h---HHHHHhhhcCCCEEEECccEEecCCCEe-ehhhHHHHHHHHHHhCCCEEEEcc
Confidence 45567888887553 2 233344455799999999763 2222 2345544 4456888899999854
No 225
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=45.37 E-value=99 Score=26.23 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccc----cccccHHHHHHhhC--CCCEEEEC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKR----ALLGSVSDYCAHHV--QCPIIIVK 187 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~----~~~gs~~~~il~~~--~~pVlvv~ 187 (197)
.++...+++.+.-+-..-..+ ....++++.|++.+..+|+-.+.+...... ..+.........++ .+||.+-=
T Consensus 13 k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL 92 (321)
T PRK07084 13 REMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHL 92 (321)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 344455566666665555454 688999999999999999988765422111 12333445566666 68887754
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
..
T Consensus 93 DH 94 (321)
T PRK07084 93 DH 94 (321)
T ss_pred CC
Confidence 43
No 226
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.11 E-value=1.1e+02 Score=26.26 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCC-CCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
++...+++.+.-+-...... ....+|++.|++.+.-+|+.-+.+.... ...++......+..+++ +||-+-=..
T Consensus 8 ~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 84 (347)
T PRK09196 8 QLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 34455566666665544444 6889999999999999999887654322 22345677888888886 898875443
No 227
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=45.06 E-value=1.5e+02 Score=23.47 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEec-CCh---------HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLT-GDP---------KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~~---------~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.....+.+.++.+.|++.++++-.+... +.. ....++.+.+.++|+|=..+... .....---....+++
T Consensus 107 ~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~ 185 (236)
T PF01791_consen 107 EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAV 185 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHH
Confidence 4555667778888888888876655332 212 25566777789999999987633 111111123445677
Q ss_pred hhCCCC----EEEE
Q 044973 177 HHVQCP----IIIV 186 (197)
Q Consensus 177 ~~~~~p----Vlvv 186 (197)
..+++| |.+-
T Consensus 186 ~~~~~p~~~~Vk~s 199 (236)
T PF01791_consen 186 EAAPVPGKVGVKAS 199 (236)
T ss_dssp HTHSSTTTSEEEEE
T ss_pred HhcCCCcceEEEEe
Confidence 778899 7765
No 228
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=44.84 E-value=75 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC----CCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRG----LGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~----~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.|.+.+++.+++.||+|-.- .........-..++.|-.+.+.||.++-.+
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 57889999999999999999753 222222234456777888888999988654
No 229
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=44.73 E-value=1.2e+02 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=16.8
Q ss_pred EEEEEeCCChhhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALD 48 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~ 48 (197)
.++|++.+.-+|..++..+.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~ 23 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKE 23 (154)
T ss_pred CEEEECCCchhHHHHHHHHHH
Confidence 689999999888888766543
No 230
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=44.44 E-value=1.5e+02 Score=25.67 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccHH-HHHHhhCCCCEEEECCC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVS-DYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~-~~il~~~~~pVlvv~~~ 189 (197)
.+.+.|+++.... .+. +..+.....+|.|++|+.+- +..- .-+|+.. .-+.++..+|++++-|.
T Consensus 222 eL~~~GIpvtlI~--Dsa---~~~~m~~~~Vd~VivGAD~I~~NG~v~-NKiGTy~lA~~Ak~~~vPfyV~ap~ 289 (363)
T PRK05772 222 ELMEEGIKVTLIT--DTA---VGLVMYKDMVNNVMVGADRILRDGHVF-NKIGTFKEAVIAHELGIPFYALAPT 289 (363)
T ss_pred HHHHCCCCEEEEe--hhH---HHHHHhhcCCCEEEECccEEecCCCEe-ehhhhHHHHHHHHHhCCCEEEEccc
Confidence 3556688888654 322 33333345799999999763 2222 2346554 44567888999999654
No 231
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.36 E-value=1.6e+02 Score=23.31 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccH
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSV 171 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~ 171 (197)
..++.+.+++.|..+-.-+..|.+.+.|..+++ ..|++.+-+-..+...+.|.-+.
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGGQKFMEDM 156 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCchhhhHHHH
Confidence 456777888899999999999999999999999 78888887766655555554443
No 232
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=44.28 E-value=1.7e+02 Score=23.76 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGD-PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
+...++...+.+.|+.++....... -...+...+.+.++|+||+.. +.+. +..++..+..... .|+-++|-.
T Consensus 19 ~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~G-GDGT-----l~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 19 KPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGG-GDGT-----INEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEEC-CCCh-----HHHHHHHHhcCCCCCcEEEEcCc
Confidence 4455566777888888776554432 333445444455788777643 2222 2344455554333 366667753
No 233
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=44.05 E-value=1.1e+02 Score=26.06 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccHH-HHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVS-DYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~-~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|+++.... .+..-.++ .+..+|.+++|++.- +..- .-.|+.. .-+.++...|++++-+.
T Consensus 200 ~~L~~~GI~vtlI~--Dsav~~~m---~~~~vd~VivGAd~v~~nG~v~-nkiGT~~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 200 WELVQEGIPATLIT--DSMAAHLM---KHGEVDAVIVGADRIAANGDTA-NKIGTYQLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred HHHHHCCCCEEEEc--ccHHHHHh---cccCCCEEEEcccEEecCCCEe-ehhhHHHHHHHHHHhCCCEEEeccc
Confidence 44556788887643 33333333 345799999999763 2232 2346543 44557888999998653
No 234
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.01 E-value=1.6e+02 Score=23.19 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-C---------ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-G---------DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-g---------~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
....+.+.++.+.+.+.|+++-..... | +......+.+.+.++|+|-+.... . -...+++..
T Consensus 105 ~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~------~~~~~~i~~ 176 (235)
T cd00958 105 REMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--D------AESFKEVVE 176 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--C------HHHHHHHHh
Confidence 344456667777777888876543322 1 112222444777899999885221 1 134577888
Q ss_pred hCCCCEEEEC
Q 044973 178 HVQCPIIIVK 187 (197)
Q Consensus 178 ~~~~pVlvv~ 187 (197)
.+++||++.-
T Consensus 177 ~~~~pvv~~G 186 (235)
T cd00958 177 GCPVPVVIAG 186 (235)
T ss_pred cCCCCEEEeC
Confidence 8899987654
No 235
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=43.40 E-value=94 Score=26.44 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~ 188 (197)
...+.+.|+++.... .+.. ..+.....+|.|++|++.- +..- .-.|+. ..-+.++..+|++++-+
T Consensus 189 a~eL~~~GI~vtlI~--Dsa~---~~~M~~~~Vd~VivGAd~I~aNG~v~-NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 189 AWELAQEGIDHAIIA--DNAA---GYFMRKKEIDLVIVGADRIASNGDFA-NKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHCCCCEEEEc--ccHH---HHHhhhcCCCEEEECccEEecCCCEe-ehhhHHHHHHHHHHcCCCEEEecc
Confidence 345566788887644 3333 3333445799999999763 2222 234554 44455788899999865
No 236
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.32 E-value=88 Score=22.81 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
+.+.+++.|+++.......|-.+.|.+..++ .++|+||..
T Consensus 32 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 32 LAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 4455666788877666566555555554332 279999984
No 237
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=43.13 E-value=78 Score=23.87 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCc----ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGK----IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~----~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++..|++.-.-+...++......++++.++.++-++...... .....+-...+.++....-||||.=..
T Consensus 27 fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~ 100 (164)
T PF03162_consen 27 FLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNH 100 (164)
T ss_dssp HHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SS
T ss_pred HHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 4455577766655555566777889999999999999765443 112122233345677778999997544
No 238
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=42.81 E-value=1.8e+02 Score=23.59 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
...=++..+.-.....++..+.+|+. .+..+- .|..-|... +.+ ....+.-.++.
T Consensus 28 ~saNIACG~HAGDp~~M~~tv~lA~~------------~gV~iG-AHPsyPD~~-----gFG-------Rr~m~~s~~el 82 (242)
T PF03746_consen 28 SSANIACGFHAGDPETMRRTVRLAKE------------HGVAIG-AHPSYPDRE-----GFG-------RRSMDISPEEL 82 (242)
T ss_dssp SEEEEE-SSSS--HHHHHHHHHHHHH------------TT-EEE-EE---S-TT-----TTT--------S-----HHHH
T ss_pred hhHHHhhcccccCHHHHHHHHHHHHH------------cCCEec-cCCCCCCCC-----CCC-------CCCCCCCHHHH
Confidence 45556667766677889999999999 554443 343322211 111 01122223455
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEecC----------ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLTG----------DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~g----------~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.......+..+...++..|.++...=..| ..++.|++.+...+.+|.+++.. ||...+..
T Consensus 83 ~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a----------gs~~~~~A 152 (242)
T PF03746_consen 83 RDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA----------GSELEKAA 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET----------TSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC----------CcHHHHHH
Confidence 55555666677778888898887654443 35788999999999999999865 44555566
Q ss_pred hhCCCCEE
Q 044973 177 HHVQCPII 184 (197)
Q Consensus 177 ~~~~~pVl 184 (197)
++...+++
T Consensus 153 ~~~Gl~~~ 160 (242)
T PF03746_consen 153 KELGLPVV 160 (242)
T ss_dssp HHCT--EE
T ss_pred HHCCCcEE
Confidence 66666654
No 239
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=42.68 E-value=1.4e+02 Score=28.87 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 140 MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 140 ~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
-++++.+..++|...+|.|....... ....++..+.+|++.--
T Consensus 192 P~i~amN~LGyDA~tLGNHEFDyG~d-----~L~~~l~~a~fPvl~AN 234 (814)
T PRK11907 192 PMYAALEALGFDAGTLGNHEFNYGLD-----YLEKVIATANMPIVNAN 234 (814)
T ss_pred HHHHHHhccCCCEEEechhhcccCHH-----HHHHHHHhCCCCEEEee
Confidence 47888999999999999998764433 23567788899988653
No 240
>PRK13057 putative lipid kinase; Reviewed
Probab=42.67 E-value=1.3e+02 Score=24.64 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 114 LSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.++...+++.|+++....... .-+..+.+.+ ..++|+||+..-+ + .+..++..++ ..+.|+-++|-.
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GGD-G-----Tv~~v~~~l~-~~~~~lgiiP~G 83 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGGD-G-----TLNAAAPALV-ETGLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECch-H-----HHHHHHHHHh-cCCCcEEEECCC
Confidence 4566677788888877655442 3344444443 3468887775322 2 2344555554 457899999854
No 241
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=42.59 E-value=1.1e+02 Score=22.07 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCC-----------------hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHH
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGD-----------------PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVS 172 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~-----------------~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~ 172 (197)
.....+.+.+.+++.|++++..-+... ..+.+.+... .+|.||+++.-+..-....+-...
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEeecEEcCcCChhhhHHH
Confidence 344556666667666777776655432 2234444444 799999999765332222233444
Q ss_pred HHH
Q 044973 173 DYC 175 (197)
Q Consensus 173 ~~i 175 (197)
+++
T Consensus 94 D~~ 96 (152)
T PF03358_consen 94 DRL 96 (152)
T ss_dssp HTH
T ss_pred HHh
Confidence 444
No 242
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.06 E-value=1.4e+02 Score=22.21 Aligned_cols=81 Identities=17% Similarity=0.061 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeC--CCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Q 044973 40 FYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQ--PFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRA 117 (197)
Q Consensus 40 ~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (197)
..-+..++++|+. .+++...+|... ... ....++..+...+.+.++
T Consensus 70 ~~~~~~~i~~a~~------------lg~~~i~~~~g~~~~~~--------------------~~~~~~~~~~~~~~l~~l 117 (213)
T PF01261_consen 70 LEYLKKAIDLAKR------------LGAKYIVVHSGRYPSGP--------------------EDDTEENWERLAENLREL 117 (213)
T ss_dssp HHHHHHHHHHHHH------------HTBSEEEEECTTESSST--------------------TSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------hCCCceeecCccccccc--------------------CCCHHHHHHHHHHHHHHH
Confidence 5678888999999 788888887541 110 001235566677788888
Q ss_pred HHHHhhcCCceEEEEecCCh---H---HHHHHHHHHcCCCE
Q 044973 118 LQICKDKNVKAETLVLTGDP---K---DMICQAAEQMHMDL 152 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~---~---~~I~~~a~~~~~dl 152 (197)
...+++.|+.+-.+...+.. . +.+.++.++.+.+-
T Consensus 118 ~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 118 AEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp HHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred HhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 88888889887776655433 2 88889988877654
No 243
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.02 E-value=1e+02 Score=25.41 Aligned_cols=71 Identities=7% Similarity=0.049 Sum_probs=35.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCC-EEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCP-IIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~p-Vlvv~~ 188 (197)
....+...++++.......+..+.|-...+..++|+|++-+.++.......+....+ ++... +.- +|++..
T Consensus 122 l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~-~~~~~~~~~~~LVl~a 194 (270)
T PRK06731 122 LQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQVEPDYICLTLSA 194 (270)
T ss_pred HHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHH-HHhhhCCCeEEEEEcC
Confidence 334444556555432212233344444444457999999998876544333344332 33322 222 556654
No 244
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.90 E-value=1e+02 Score=20.34 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=39.2
Q ss_pred HHHHHHhhcCC-ceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 116 RALQICKDKNV-KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi-~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
.+...++..|+ .+. ...+ ..+..+..+...+|++++...-... .. -.+.+.|-... .+|++++-..
T Consensus 13 ~l~~~l~~~~~~~v~---~~~~-~~~~~~~~~~~~~d~iiid~~~~~~-~~---~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 13 LLEKLLERAGYEEVT---TASS-GEEALELLKKHPPDLIIIDLELPDG-DG---LELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHTTEEEEE---EESS-HHHHHHHHHHSTESEEEEESSSSSS-BH---HHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHhCCCCEEE---EECC-HHHHHHHhcccCceEEEEEeeeccc-cc---cccccccccccccccEEEecCC
Confidence 34444555555 222 2334 4555677788899999999665431 11 24556665555 4888888644
No 245
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=41.88 E-value=1.9e+02 Score=25.28 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
...+.+-+.+.|+.++..-.......+|.+.+. +++-+|+|+...
T Consensus 264 a~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT~ 308 (388)
T COG0426 264 AQAIAEGLMKEGVDVEVINLEDADPSEIVEEIL--DAKGLVVGSPTI 308 (388)
T ss_pred HHHHHHHhhhcCCceEEEEcccCCHHHHHHHHh--hcceEEEecCcc
Confidence 334555667779999988887778889999888 799999999864
No 246
>PRK00861 putative lipid kinase; Reviewed
Probab=41.27 E-value=1.8e+02 Score=23.85 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
++...++. +++++...... ....++.+.+...+.|+||+.. +.+.+ ..++..++ ...+|+-++|-.
T Consensus 24 ~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTl-----~evv~~l~-~~~~~lgviP~G 90 (300)
T PRK00861 24 LIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASG-GDGTL-----SAVAGALI-GTDIPLGIIPRG 90 (300)
T ss_pred HHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEEC-ChHHH-----HHHHHHHh-cCCCcEEEEcCC
Confidence 33334444 35666544443 4556677666667889877642 32322 34455554 346888888864
No 247
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=41.09 E-value=1.5e+02 Score=23.78 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCC--ceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNV--KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi--~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~i 175 (197)
.+.+..+.+++.|. ++-.-+-.+.+.+.|..+.. .+|+|.+-+-..+...+.+..+..++|
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~f~~~~l~KI 166 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKAPSDLILDRV 166 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccccHHHHHHH
Confidence 35567777888888 66666666789999999998 689888877665555555555444444
No 248
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=40.86 E-value=86 Score=22.96 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCceEEEEecCC-----hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTGD-----PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~-----~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+...+.+.|+.+...+-.|| ..+.|--++++.+...|++--.+.....++ -..+.+..++ .||++++..
T Consensus 15 ~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f--~~~~~~a~~~--KPVv~lk~G 90 (138)
T PF13607_consen 15 TAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRF--LEAARRAARR--KPVVVLKAG 90 (138)
T ss_dssp HHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHH--HHHHHHHCCC--S-EEEEE--
T ss_pred HHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHH--HHHHHHHhcC--CCEEEEeCC
Confidence 3455677778898888887774 345555556667788888877765554332 2444444333 999999876
Q ss_pred CC
Q 044973 190 PK 191 (197)
Q Consensus 190 ~~ 191 (197)
..
T Consensus 91 rt 92 (138)
T PF13607_consen 91 RT 92 (138)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 249
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=40.77 E-value=1.3e+02 Score=23.70 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv 186 (197)
+...++..|.++.. +-...|.+.+++.+++.++|+|.+...-...... +..+.+.+-.... ++|++-
T Consensus 108 v~~~l~~~G~~Vi~-LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~vG 175 (213)
T cd02069 108 VGVILSNNGYEVID-LGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLIG 175 (213)
T ss_pred HHHHHHhCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEEE
Confidence 44566777777655 2234689999999999999999998654433332 2445555543322 555443
No 250
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=40.47 E-value=1.1e+02 Score=20.53 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=24.3
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF 78 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~ 78 (197)
|+|++.+..+|...+..+.++ . .++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~--~--------------~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL--G--------------YQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh--C--------------CCEEEEEEcCCC
Confidence 578999998888777666443 2 268888887653
No 251
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=40.46 E-value=1.7e+02 Score=22.59 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=39.4
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
+...++..|.++... -.+-|.+.+++.+++.++|+|.+...-...... +....+.+-..
T Consensus 104 v~~~l~~~G~~vi~L-G~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~--~~~~i~~l~~~ 162 (197)
T TIGR02370 104 VVTMLRANGFDVIDL-GRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG--QKDINDKLKEE 162 (197)
T ss_pred HHHHHHhCCcEEEEC-CCCCCHHHHHHHHHHcCCCEEEEccccccCHHH--HHHHHHHHHHc
Confidence 445666677776552 234589999999999999999998765444433 24454544443
No 252
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.26 E-value=2.2e+02 Score=23.71 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
.+-++.+.|++.++|-+++-..-..+....-+=..-..|+..+..|+++..-+..
T Consensus 87 eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 3556678899999999999887766555433334556788888999999975543
No 253
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=39.97 E-value=1.4e+02 Score=26.58 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC-----------cccccc
Q 044973 99 EQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG-----------KIKRAL 167 (197)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~-----------~~~~~~ 167 (197)
..+.+....+....+++++.+.+.+.|..+..--...+..+.|-+.+.+.+.+.||.+-+--+ .....+
T Consensus 52 ~~eik~~~lenLd~~l~~~~~~v~~~Gg~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ 131 (459)
T COG1139 52 AREIKLHVLENLDEYLEQLEENVTRNGGHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVW 131 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEE
Confidence 344555555667778888888888889888875544567777888999999999999864211 111233
Q ss_pred cccHHHHHHhhCC-CCEEEECCC
Q 044973 168 LGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 168 ~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
-....+.|++-+. -|.-||-|.
T Consensus 132 ETDLGE~IlQl~~~~PsHIV~PA 154 (459)
T COG1139 132 ETDLGELILQLAGEPPSHIVAPA 154 (459)
T ss_pred EccHHHHHHHhcCCCCcceeccc
Confidence 4567788887775 777777553
No 254
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=39.90 E-value=2e+02 Score=23.10 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
....++.++.+.+.|+.+...-+.-.+.++|..... .+|.|.+|..
T Consensus 48 ~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~--~~d~IyVgGG 93 (224)
T COG3340 48 DFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLM--KADIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhh--hccEEEECCc
Confidence 456777888889999998887777788899998888 7999999853
No 255
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=39.64 E-value=86 Score=27.44 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=9.8
Q ss_pred CCCCEEEECCCCC
Q 044973 179 VQCPIIIVKPPPK 191 (197)
Q Consensus 179 ~~~pVlvv~~~~~ 191 (197)
..+||++|+....
T Consensus 109 ~~iPVf~I~GNHD 121 (405)
T TIGR00583 109 VAIPVFSIHGNHD 121 (405)
T ss_pred CCCCEEEEcCCCC
Confidence 5799999986543
No 256
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=39.39 E-value=1.8e+02 Score=24.58 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCceEEEEec-CC--h----HHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 115 SRALQICKDKNVKAETLVLT-GD--P----KDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~-g~--~----~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+++.+.+++.|+.+...... ++ + .+.+.+.+++ ++|.|| +|.-.. ..++..+....+.|++.|
T Consensus 40 ~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~--------~D~aK~vA~~~~~p~i~I 110 (348)
T cd08175 40 KKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI--------NDITKYVSYKTGIPYISV 110 (348)
T ss_pred HHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH--------HHHHHHHHHhcCCCEEEe
Confidence 55666677778876544322 32 2 3345555555 899887 552211 234444555567899999
Q ss_pred CCC
Q 044973 187 KPP 189 (197)
Q Consensus 187 ~~~ 189 (197)
|-.
T Consensus 111 PTT 113 (348)
T cd08175 111 PTA 113 (348)
T ss_pred cCc
Confidence 964
No 257
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=38.94 E-value=1.3e+02 Score=20.64 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+.+++.|++++.......-...|.+..++..+|+||--..+... .-.|....+..-...+|++-
T Consensus 37 ~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 37 KYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhCCCEEe
Confidence 34556788876544332333678888899999999986543221 11244455555566788763
No 258
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=38.89 E-value=3.5e+02 Score=25.72 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=71.9
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
.++.|=|++.++.+...|+..|..+......-...|.. .....+.+.|-.++.....+|....
T Consensus 576 ~~~~v~vavEGNSsQdsaVaIa~~i~~~~~~~~~~~~~-~~~~~~~F~H~~~~~~~v~~P~yll---------------- 638 (738)
T PHA03368 576 RFRSVRVAVEGNSSQDSAVAIATRIARELASLRASGVA-PMPPSLLFYHCRPPGSAVAYPFFLL---------------- 638 (738)
T ss_pred cccEEEEEEecCccHHHHHHHHHHHHHHHhhhhhcccC-CCCceeEEEeeCCCCCceeCcchhh----------------
Confidence 46889999999888888888888877762000000000 0024788888888765555555443
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceE------EEEecCChHHHHHHHHHHcCCCEEEEec
Q 044973 105 AQEENSAALLSRALQICKDKNVKAE------TLVLTGDPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~------~~v~~g~~~~~I~~~a~~~~~dliViG~ 157 (197)
.++-...++.+...+....+... ++-+.-||.+.+++..+ +..-+++|.
T Consensus 639 --~~~K~~Afe~Fi~~fNsg~i~aSQ~lvS~Ti~l~~DPv~YL~~Qi~--ni~~~~~~~ 693 (738)
T PHA03368 639 --QKQKTPAFDHFIKRFNSGRVMASQELVSNTVRLQTDPVEYLTKQLK--NLTEVVTGG 693 (738)
T ss_pred --ccchhHHHHHHHHHhcCCceEeeeeeeeeeeeeccChHHHHHHHHh--hcEEEecCC
Confidence 23333466777777777655432 22334599999999999 888888854
No 259
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=38.76 E-value=2e+02 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=25.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|.+.+.-+|..++.++.+ . ..+++.+++...
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~---~-------------~~~v~alt~dyg 36 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ---Q-------------YDEVHCVTFDYG 36 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh---c-------------CCeEEEEEEEeC
Confidence 4799999999888888876632 2 246888888765
No 260
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=38.58 E-value=1.1e+02 Score=19.65 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|++++|.++....+.+...+....
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~ 69 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLK 69 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence 379999999999888888777777666
No 261
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=38.45 E-value=73 Score=25.88 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=12.6
Q ss_pred HHHHhhCCCCEEEECCCCC
Q 044973 173 DYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 173 ~~il~~~~~pVlvv~~~~~ 191 (197)
-..|...+||+++||.+..
T Consensus 82 f~~L~~~~~p~~~vPG~~D 100 (255)
T PF14582_consen 82 FRILGELGVPVFVVPGNMD 100 (255)
T ss_dssp HHHHHCC-SEEEEE--TTS
T ss_pred HHHHHhcCCcEEEecCCCC
Confidence 3567888999999997654
No 262
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=38.44 E-value=2e+02 Score=23.07 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+.+..+.+.+++.|+.+.......++ ....++.....++|.+|++....... ...-..+.+.++|++++-.
T Consensus 43 ~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~------~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV------GNAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHH------HHHHHHHHHCCCCEEEEcc
Confidence 45555666777788777654333343 33445555667899888875332111 1112455667899999864
No 263
>PRK00509 argininosuccinate synthase; Provisional
Probab=38.07 E-value=2.8e+02 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.6
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++|+|++.+.-+|.-++.++.+ . .+.+++.+++...
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e---~------------lG~eViavt~d~G 38 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKE---T------------YGCEVIAFTADVG 38 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHH---h------------hCCeEEEEEEecC
Confidence 5899999999888888776644 2 3567899988655
No 264
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.86 E-value=2.3e+02 Score=23.39 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEec-C-------------ChHHHHHHHHHHcCCCEEEE--ecCCCCcccccccc-cHHHH
Q 044973 112 ALLSRALQICKDKNVKAETLVLT-G-------------DPKDMICQAAEQMHMDLLVV--GSRGLGKIKRALLG-SVSDY 174 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~-g-------------~~~~~I~~~a~~~~~dliVi--G~~~~~~~~~~~~g-s~~~~ 174 (197)
+...++.+.++..|+.++..+.. | .-.++..+++++.++|.|-+ |+-........-+| ....+
T Consensus 115 ~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~ 194 (281)
T PRK06806 115 QKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQE 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHH
Confidence 34455667777888877744322 2 23456677777789999999 76433222111122 44566
Q ss_pred HHhhCCCCEEEEC
Q 044973 175 CAHHVQCPIIIVK 187 (197)
Q Consensus 175 il~~~~~pVlvv~ 187 (197)
+....++|+.++-
T Consensus 195 i~~~~~iPlV~hG 207 (281)
T PRK06806 195 INDVVHIPLVLHG 207 (281)
T ss_pred HHHhcCCCEEEEC
Confidence 7777889987765
No 265
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=37.66 E-value=2.7e+02 Score=24.01 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=22.6
Q ss_pred eEEEEecC--ChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 128 AETLVLTG--DPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 128 ~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+..+..+ .....|++.+++.+.+.+.+|+.+.
T Consensus 235 a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 235 VNVIVVFARQFHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred CeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 34444444 4567778888888888888887664
No 266
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=37.61 E-value=54 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..++.+..++.++|.|++|+-+-+ ..+++|-...++||+
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms--------~la~~Lq~~~gvPVI 201 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMS--------DLADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHH--------HHHHHHHHHhCCCcc
Confidence 456667788999999999987754 446666666777764
No 267
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.48 E-value=1.6e+02 Score=23.64 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~ 174 (197)
+.+..+.+++.|.++-.-+-.+.+.+.+..+.. ..|+|.+-+-..+...+.+..++.++
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~fi~~~l~K 155 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQPFIPEMLDK 155 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchhccHHHHHH
Confidence 445667788889988877777889999999998 68888776655554444444444333
No 268
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=37.27 E-value=1e+02 Score=22.64 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.9
Q ss_pred HHhhCCCCEEEEC
Q 044973 175 CAHHVQCPIIIVK 187 (197)
Q Consensus 175 il~~~~~pVlvv~ 187 (197)
++....+||++|-
T Consensus 124 l~~~~~~~vilV~ 136 (166)
T TIGR00347 124 LIKLLQLPVILVV 136 (166)
T ss_pred HHHHhCCCEEEEE
Confidence 5555555555553
No 269
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=37.20 E-value=2e+02 Score=22.51 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCc-eEEEEecC---ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 114 LSRALQICKDKNVK-AETLVLTG---DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 114 l~~~~~~~~~~gi~-~~~~v~~g---~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
.+++.+.+.+.|+. ++...... .....+.+..+ ++|.|+++--....+.+.+.++-..++|+.
T Consensus 46 ~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~ 112 (217)
T cd03145 46 GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLRITSALGGTPLLDALRK 112 (217)
T ss_pred HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHHHHHHHcCChHHHHHHH
Confidence 34455555555764 44433321 13345666666 799999987665566666666666665554
No 270
>PRK05588 histidinol-phosphatase; Provisional
Probab=37.01 E-value=2.2e+02 Score=22.78 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhcCCceEEEEec------CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 111 AALLSRALQICKDKNVKAETLVLT------GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~------g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
....+++.+.+.+.|+.+|.-... -.+...+++.+.+.+..+|++|+..+....=..--.-+..+++..+.++.
T Consensus 165 ~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~~~ 244 (255)
T PRK05588 165 KEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLKPV 244 (255)
T ss_pred HHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCEEE
Confidence 345567777778888766643311 12556789999998999999999776532210011346778999998876
Q ss_pred EECCCC
Q 044973 185 IVKPPP 190 (197)
Q Consensus 185 vv~~~~ 190 (197)
......
T Consensus 245 ~f~~~~ 250 (255)
T PRK05588 245 YFKNRK 250 (255)
T ss_pred EEcCCc
Confidence 666553
No 271
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.57 E-value=1.6e+02 Score=22.56 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.++|++.+++.++|+|++|-...
T Consensus 89 ~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCc
Confidence 47799999999999999996543
No 272
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.55 E-value=1.4e+02 Score=21.32 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
+.+++++.|.++.......|-.+.|.+..++ ..+|+||..
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 4556777888765544444544444444332 268988874
No 273
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=36.49 E-value=70 Score=21.71 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcCCCEEEEecCCC
Q 044973 114 LSRALQICKDKNVKAETLVLTGD-PKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
-+.+.+.+++.|+.+........ +...+- ...-..+|+||+-....
T Consensus 18 a~~L~~aa~~~g~~~~ve~~~~~g~~~~l~-~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 18 AEALEKAAKKLGWEIKVETQGSLGIENELT-AEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHHCCCeEEEEEecCcCccCcCC-HHHHhhCCEEEEecCCC
Confidence 34566777888998887765543 333333 12333799999987653
No 274
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=36.46 E-value=2.6e+02 Score=23.55 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh----HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP----KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~----~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
...+++...+++.|+.+......+++ .+.+.+.+++.++|+||-= -+-+.+ .++..+......|++.||
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav-GGGS~i------D~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 36 LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGI-GGGKTL------DTAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEe-cCchhh------HHHHHHHHHcCCCEEEeC
Confidence 46667777777888877544444543 4566677788899976642 221111 233344444578999998
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 109 TT 110 (351)
T cd08170 109 TI 110 (351)
T ss_pred Cc
Confidence 64
No 275
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=36.36 E-value=66 Score=20.76 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|++++|++.....+..+....+..
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~ 72 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLP 72 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHh
Confidence 479999999999888888888885555
No 276
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=36.19 E-value=1.9e+02 Score=24.53 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHHHhhcCCceEEEEecC---ChHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 116 RALQICKDKNVKAETLVLTG---DPKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g---~~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+...+...+ .+...+... +..+.+.+.+++.++|.|| +|... .+.++..+.....+|++.||-.
T Consensus 52 ~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGs--------v~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 52 RVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGGGK--------VIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred HHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCCch--------HHHHHHHHHHhcCCCEEEeCCC
Confidence 3444455555 444433222 2355677777777899877 45221 2345555555667899999864
No 277
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=36.13 E-value=82 Score=22.40 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=20.4
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
|||++++.++.....+.++...+.+.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~ 26 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA 26 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC
Confidence 58999999999999988887777555
No 278
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=36.10 E-value=2.8e+02 Score=23.72 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.3
Q ss_pred HHHHHHHHHc-CCCEEEEecCC
Q 044973 139 DMICQAAEQM-HMDLLVVGSRG 159 (197)
Q Consensus 139 ~~I~~~a~~~-~~dliViG~~~ 159 (197)
..+.++|++. ++|.|+.|.+.
T Consensus 106 ~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 106 GAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 5667888886 99999999864
No 279
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=36.04 E-value=2.4e+02 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=19.8
Q ss_pred CCEEEEEeCCChh----------hHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGE----------SFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~----------s~~al~~a~~la~~ 52 (197)
...+.|.+|..+. .....+|...+++.
T Consensus 13 ~s~lcvglDp~~~~~~~~~~~~~~~~~~~f~~~ii~~ 49 (261)
T TIGR02127 13 RSPLCVGLDPRLELLPEWGLPSSAAGLQAFCLRIIDA 49 (261)
T ss_pred CCCEEEEECCChhhcccccccchHHHHHHHHHHHHHh
Confidence 3578889999774 33445888889888
No 280
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.01 E-value=1.9e+02 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCceEEEEecCC---------hHHHHHHHHHHcCCCEEEEecC-CCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 125 NVKAETLVLTGD---------PKDMICQAAEQMHMDLLVVGSR-GLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 125 gi~~~~~v~~g~---------~~~~I~~~a~~~~~dliViG~~-~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.++-..+..|| ..+.|++++++.++|++|.|-- ..++. ...-|.++..+-.+..+|++.-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrY-G~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRY-GMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccH-HHHHHHHHHHHHHhhCCCeEEE
Confidence 455555555653 2367899999999999999943 22222 2345778888888899998865
No 281
>PRK14974 cell division protein FtsY; Provisional
Probab=36.00 E-value=2.7e+02 Score=23.65 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCceEEEEecCChHH---HHHHHHHHcCCCEEEEecCCCCcccccc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKD---MICQAAEQMHMDLLVVGSRGLGKIKRAL 167 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~~~~dliViG~~~~~~~~~~~ 167 (197)
++...+...|+++......+++.. ..++.++..++|+|++-+.++......+
T Consensus 186 qL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~l 240 (336)
T PRK14974 186 QLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANL 240 (336)
T ss_pred HHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHH
Confidence 344455566777654443345554 3344566678999999988876543333
No 282
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=35.71 E-value=1.9e+02 Score=22.95 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccH
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSV 171 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~ 171 (197)
.+.++.+..++.|.++-.-+-.+.+.+.|..+.. ..|+|.+-+-..+...+.++...
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~--~~D~vlvMtV~PGfgGq~fi~~~ 150 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD--KVDLILLMSVNPGFGGQSFIPHT 150 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--hCCeEEEEEecCCCCCceecHhH
Confidence 3556777888889988887777889999999998 68877775544444343343333
No 283
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=35.41 E-value=2.6e+02 Score=23.13 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCceEEEEec--C------------ChHHHHHHHHHHcCCCEEEE--ec-CCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLT--G------------DPKDMICQAAEQMHMDLLVV--GS-RGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~--g------------~~~~~I~~~a~~~~~dliVi--G~-~~~~~~~~~~~gs~~~~i 175 (197)
...++.+.+...|+.++..+-. | .-.++..++.++.++|.|.+ |+ |+...-...+--.....|
T Consensus 116 ~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i 195 (282)
T TIGR01859 116 LTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEI 195 (282)
T ss_pred HHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHH
Confidence 4555667777778877755533 1 13456677887789999994 55 321111111111345667
Q ss_pred HhhCCCCEEEEC
Q 044973 176 AHHVQCPIIIVK 187 (197)
Q Consensus 176 l~~~~~pVlvv~ 187 (197)
....++|+.+.-
T Consensus 196 ~~~~~iPlv~hG 207 (282)
T TIGR01859 196 KELTNIPLVLHG 207 (282)
T ss_pred HHHhCCCEEEEC
Confidence 777789987654
No 284
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=35.07 E-value=1.3e+02 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.027 Sum_probs=33.5
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
..+|+|+.|....|....+.++.-... .+.++..+...+.
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~------------~G~~V~~~g~~~t 79 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRA------------NGVDVIDIGLVPT 79 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHH------------TTEEEEEEEEB-H
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhh------------cccccccccccCc
Confidence 479999999999999999999999999 8899988885544
No 285
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=34.88 E-value=1.4e+02 Score=25.06 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-Cccc-ccccccHHHHHHhhCCCCEEEECC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIK-RALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~-~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+++.+ ++|+||+|-... +.+. .+.+..+.+.| ++.||+.|-|
T Consensus 174 ~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 174 KPAPGVLEAIE--EADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEEcC
Confidence 36778888888 799999997653 3333 34456667766 7888886654
No 286
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=34.80 E-value=38 Score=22.80 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=37.4
Q ss_pred HHHHhhcCCceEEEEe-cCCh--HH---HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 118 LQICKDKNVKAETLVL-TGDP--KD---MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~-~g~~--~~---~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
.+.+++.|+++...+. .+.+ .+ .+.+..++..+|+||.-......... --|....+++-+..+|++
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 4556778888443322 3333 22 49999999999988887655432221 135555666666667654
No 287
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=96 Score=26.35 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-Cccc-ccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIK-RALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~-~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+.+++.+ ++|+||+|-.+. +.+. .+++..+.+.| +++..|++.+.+-
T Consensus 178 ~a~~eaveAI~--~AD~IviGPgSl~TSIlP~Lllp~I~eaL-r~~~ap~i~v~n~ 230 (323)
T COG0391 178 SAAPEAVEAIK--EADLIVIGPGSLFTSILPILLLPGIAEAL-RETVAPIVYVCNL 230 (323)
T ss_pred CCCHHHHHHHH--hCCEEEEcCCccHhhhchhhchhHHHHHH-HhCCCCEEEeccC
Confidence 45677788888 799999997653 3333 34566666655 5599999988764
No 288
>PRK06850 hypothetical protein; Provisional
Probab=34.65 E-value=3.5e+02 Score=24.59 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=43.6
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
.-++|++.+..+|..++..+..-..... ......++++++....... ...
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al~~lp-------~e~r~k~v~Vi~~DTgvE~-----------------------Pe~ 84 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNALAGLP-------PEKRTKPVYVISSDTLVEN-----------------------PVV 84 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHHHhcc-------hhccCCcEEEEECCCCCcc-----------------------HHH
Confidence 3478999999999998887765433310 0001235666655333221 223
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEe
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVL 133 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~ 133 (197)
.......++.+...+++.|+++.++++
T Consensus 85 ~~~v~~~l~~i~~~a~~~glpi~~~~v 111 (507)
T PRK06850 85 VDWVNKSLERINEAAKKQGLPITPHKL 111 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEee
Confidence 344455555666666677777766553
No 289
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.58 E-value=2.4e+02 Score=22.53 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|+.+......+++. ..+++.+...++|-||+......... ...+ .+.+.++||+.+-.
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-----~~l~-~l~~~~ipvV~~~~ 88 (288)
T cd01538 16 RDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALA-----SAVE-KAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHH-----HHHH-HHHHCCCCEEEECC
Confidence 355556666777788777654444433 35555556679999988653222111 1222 34567899999854
No 290
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=34.52 E-value=2.2e+02 Score=23.77 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=36.2
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcc-cccccccHHHHHHhhCCCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKI-KRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~-~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.+.++..|+.+-.. .++.. ....+.+.++|.|++-.+..+.. ...-.-....++....++||+.-
T Consensus 101 ~i~~lk~~g~~v~~~--v~s~~--~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaa 167 (307)
T TIGR03151 101 YIPRLKENGVKVIPV--VASVA--LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAA 167 (307)
T ss_pred HHHHHHHcCCEEEEE--cCCHH--HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 455666667655432 34443 34667777999999832211111 11111234556666778998764
No 291
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=34.33 E-value=1.3e+02 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 138 KDMICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 138 ~~~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
...++..|+. .+++.||+=.+..+..+-| -..++..++|++.+.-
T Consensus 60 i~~~~~~an~~~~c~gvi~wMhTfSpakmw------I~gl~~l~kPllhl~t 105 (359)
T PF02610_consen 60 ITRVCKEANADEDCDGVITWMHTFSPAKMW------IPGLQRLQKPLLHLHT 105 (359)
T ss_dssp HHHHHHHHHH-TTEEEEEEEESS---THHH------HHHHHH--S-EEEEE-
T ss_pred HHHHHHHhhccCCccEEeehhhhhccHHHH------HHHHHHhCCCeEEeec
Confidence 3444455543 5888999888887655433 4577889999999853
No 292
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=34.33 E-value=1.9e+02 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
..+.|.+.+++.++|+|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 4677888888888999999987643
No 293
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.15 E-value=2e+02 Score=21.42 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=40.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
+...+.+.|..+...-.. ...++++..|-+.++|.|++.+..-.+.. ++-.+.+.+-..=.-.++
T Consensus 32 ia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~--l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 32 IARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLT--LVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHH--HHHHHHHHHHHhCCcceE
Confidence 455667777766553222 45688888888889999999876544332 334455544333335555
No 294
>PRK06455 riboflavin synthase; Provisional
Probab=34.13 E-value=2e+02 Score=21.64 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhc--CCceEEEEecC--ChHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHH---hhCCCCEE
Q 044973 113 LLSRALQICKDK--NVKAETLVLTG--DPKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCA---HHVQCPII 184 (197)
Q Consensus 113 ~l~~~~~~~~~~--gi~~~~~v~~g--~~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il---~~~~~pVl 184 (197)
.++-+.+.+++. +.++....+.| +..-++.++++..++|.|| +|+-+.+.........++..|. -+...||+
T Consensus 16 L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi 95 (155)
T PRK06455 16 MGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHII 95 (155)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEE
Confidence 445566666663 46666655667 5677777888777888766 4665554443444444444443 34568888
Q ss_pred EECC
Q 044973 185 IVKP 188 (197)
Q Consensus 185 vv~~ 188 (197)
-|--
T Consensus 96 ~v~v 99 (155)
T PRK06455 96 EVFV 99 (155)
T ss_pred EEEe
Confidence 7743
No 295
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.10 E-value=93 Score=25.08 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGD 136 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~ 136 (197)
...++++...+.+.+ +...+..||
T Consensus 25 ~~~l~~l~~~~~~~~--~D~lli~GD 48 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQ--IDALLVAGD 48 (253)
T ss_pred HHHHHHHHHHHHHcC--CCEEEECCc
Confidence 345666666666643 444555554
No 296
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=33.97 E-value=2.4e+02 Score=22.45 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=49.4
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
++++.+.+..+|..|+-++..- . .-+.++.+.+............
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~--~--------------~V~~L~~~~~~~~~s~~~h~~~------------------- 46 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE--H--------------EVISLVGVFSENEESYMFHSPN------------------- 46 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc--C--------------eeEEEEEEcCCCCCccccccCC-------------------
Confidence 5888899999988888777653 2 2234444444321111111111
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC---ChHHHHHHHHHHcCCCEEEEec
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG---DPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g---~~~~~I~~~a~~~~~dliViG~ 157 (197)
++-+...++..|++.......+ +..+.+.+..++.+++.||.|.
T Consensus 47 ------~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~Gd 93 (222)
T TIGR00289 47 ------LHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGA 93 (222)
T ss_pred ------HHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECc
Confidence 1223344455577765444333 3455566666677888888886
No 297
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.85 E-value=3.1e+02 Score=23.72 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCC-----CcccccccccHHHHHHhhCCCCEEE
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGL-----GKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~-----~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
.+....+++.++.+...+ + ....++.+.+.+.++|+|++-.+-. +....+ ....+++++.++||++
T Consensus 122 ~~ii~~vr~a~VtvkiRl--~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p---~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 122 GERIAEVRDSGVITAVRV--SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEP---LNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHHhcceEEEEec--CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCH---HHHHHHHHHCCCCEEE
Confidence 334444555554444444 3 3577889999999999999853211 110111 1234566777899885
No 298
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.60 E-value=1.5e+02 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
-+...+.+.|+++......+|-.+.|.+..++ ..+|+||..
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 34566777888887666666655555554433 268988884
No 299
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=33.60 E-value=2.2e+02 Score=23.24 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
+..+.+.+..+...+|.||+..+.-+..... .-...+-..++.|||+=.
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~TG~~~d~---~el~~a~~~~~~pvlvGS 212 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSRTGSPPDL---EELKLAKEAVDTPVLVGS 212 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEecccCCCCCCH---HHHHHHHhccCCCEEEec
Confidence 6677777888888999999865443322211 223444555678888743
No 300
>PRK03670 competence damage-inducible protein A; Provisional
Probab=33.42 E-value=2.6e+02 Score=22.68 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH---cCCCEEEEe
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ---MHMDLLVVG 156 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~---~~~dliViG 156 (197)
-+.+.+.+.|+.+......+|-.+.|.+..++ ..+|+||+.
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC
Confidence 35566778899988777777766667766543 247988885
No 301
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=33.29 E-value=3.5e+02 Score=25.66 Aligned_cols=90 Identities=8% Similarity=0.056 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHH-----------HH-------HHHHHcCCCEEEEecCC
Q 044973 98 VEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDM-----------IC-------QAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~-----------I~-------~~a~~~~~dliViG~~~ 159 (197)
+.++..++..++.++.+..+.+.|++.|+.++.=+-.|+..+. ++ +.+++++++=||+..+.
T Consensus 196 YtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~Ks 275 (733)
T PLN02925 196 YTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKA 275 (733)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence 3345556666777888889999999999888876666543332 22 34678899999998776
Q ss_pred CCcccccc-cccHHHHHHhh-CCCCEEEEC
Q 044973 160 LGKIKRAL-LGSVSDYCAHH-VQCPIIIVK 187 (197)
Q Consensus 160 ~~~~~~~~-~gs~~~~il~~-~~~pVlvv~ 187 (197)
........ ..-.+..+... ...|+++=-
T Consensus 276 Sn~~~~V~AyR~La~~L~~~g~~yPLhLgv 305 (733)
T PLN02925 276 SNPVVMVQAYRLLVAEMYVLGWDYPLHLGV 305 (733)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 44332211 11222322222 578888743
No 302
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=33.27 E-value=92 Score=25.79 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 116 RALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.++......|+++...-...+ ....+++..++.++||||+..+=. =.+..+.++.+..++=++.
T Consensus 129 dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMq---------ILS~d~~~~~~g~iINIHH 196 (287)
T COG0788 129 DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQ---------ILSPDFVERFPGKIINIHH 196 (287)
T ss_pred HHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHh---------hCCHHHHHhccCcEEEecc
Confidence 355566677899887655432 457788999999999999985421 1233445555555555543
No 303
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=33.17 E-value=3e+02 Score=23.50 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHH
Q 044973 37 GESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSR 116 (197)
Q Consensus 37 ~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (197)
+....++++|..+.+. ++++.-.+++.|........+.+ .+-+..
T Consensus 104 Es~e~~~~~A~~lk~~-------------ga~~~r~~~fKpRTsp~sf~G~g----------------------~~gL~~ 148 (335)
T PRK08673 104 ESEEQILEIARAVKEA-------------GAQILRGGAFKPRTSPYSFQGLG----------------------EEGLKL 148 (335)
T ss_pred CCHHHHHHHHHHHHHh-------------chhhccCcEecCCCCCccccccc----------------------HHHHHH
Confidence 4556778888887666 45555556666654322111111 223334
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+.+.+++.|+.+-+.+..-.-.+.+. +. +|++=+|++.-.
T Consensus 149 L~~~~~~~Gl~v~tev~d~~~~~~l~----~~-vd~lqIgAr~~~ 188 (335)
T PRK08673 149 LAEAREETGLPIVTEVMDPRDVELVA----EY-VDILQIGARNMQ 188 (335)
T ss_pred HHHHHHHcCCcEEEeeCCHHHHHHHH----Hh-CCeEEECccccc
Confidence 55557778999888776554444443 33 789999887543
No 304
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.05 E-value=2.5e+02 Score=22.25 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
.+.++++...+.|..+...+..|--.+.+-.. .+.++|.+|+|+.
T Consensus 153 kI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l-~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESGRDIRLEIDGGVKVDNIREI-AEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcCCCeeEEEECCCCHHHHHHH-HHcCCCEEEEeHH
Confidence 45556666666676666666555334555544 4569999999964
No 305
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.02 E-value=2.2e+02 Score=24.35 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCceEEEE-ecCCh----HHHHHHHHHHcCCCEEE-Eec
Q 044973 113 LLSRALQICKDKNVKAETLV-LTGDP----KDMICQAAEQMHMDLLV-VGS 157 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v-~~g~~----~~~I~~~a~~~~~dliV-iG~ 157 (197)
.++++...+++.|+.+.... ..++| .+.+++.+++.++|.|| +|.
T Consensus 39 ~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 89 (375)
T cd08194 39 LVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG 89 (375)
T ss_pred hHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45556677777787765432 22332 45677778888999988 553
No 306
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=32.75 E-value=2.7e+02 Score=22.60 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCceEEEEecCC--hHHHHH--HHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 114 LSRALQICKDKNVKAETLVLTGD--PKDMIC--QAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~--~~~~I~--~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+++...++..|++++..+..|- +-+-+. +.-+..++|.+|+-+.-.+.+ ..-+.--..|||+-+|-+
T Consensus 133 AeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaL--------PsvvagLvD~PVIavPTs 204 (254)
T COG1691 133 AEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEGAL--------PSVVAGLVDVPVIAVPTS 204 (254)
T ss_pred HHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEcccccch--------HHHHHhccCCCeEecccc
Confidence 34555666777999998888873 344444 455667899888875544332 233445678999999864
No 307
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.62 E-value=2.2e+02 Score=25.23 Aligned_cols=61 Identities=13% Similarity=0.313 Sum_probs=41.9
Q ss_pred CCceEEEEecCC---------hHHHHHHHHHHcCCCEEEEecC-CCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 125 NVKAETLVLTGD---------PKDMICQAAEQMHMDLLVVGSR-GLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 125 gi~~~~~v~~g~---------~~~~I~~~a~~~~~dliViG~~-~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.++-..+..|| ..+.|++++++.++|++|.|-- ..++. ...-|.++..+-.+..+|++.-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrY-G~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRY-GVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccH-HHHHHHHHHHHHHhhCCCeEEE
Confidence 455555555553 2367899999999999999943 22222 2345778888888899998865
No 308
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.50 E-value=3e+02 Score=22.99 Aligned_cols=44 Identities=11% Similarity=0.317 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcC----CCEEEEe
Q 044973 113 LLSRALQICKDKNVKAETLVLTGD-PKDMICQAAEQMH----MDLLVVG 156 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~----~dliViG 156 (197)
+.+.-.+.|++.|+.++......+ ..+++++..++.| +|-|++-
T Consensus 55 Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvq 103 (287)
T PRK14176 55 YVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQ 103 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 444455677777888887666543 4455666666554 4456553
No 309
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=32.38 E-value=4.6e+02 Score=25.15 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCccc------ccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIK------RALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~------~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.-.+.||..|.+.+.+++++.-+.+.... ...+..+...+++++||.|-+.=.+
T Consensus 541 ~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdR 600 (769)
T KOG1650|consen 541 LMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDR 600 (769)
T ss_pred hchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEec
Confidence 46789999999999999999987653211 1223467888999999999887543
No 310
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.33 E-value=2.8e+02 Score=22.74 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC----ChHHHH---HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG----DPKDMI---CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g----~~~~~I---~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~ 180 (197)
.+.-+.+.++.+.|.++|+++-.....| +..+.| .+.+-+.++|+|=+-.. +..-++++..++
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~----------~~~f~~vv~a~~ 192 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV----------EEGFERITAGCP 192 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC----------HHHHHHHHHcCC
Confidence 3444567788889999999866533334 223323 34466899999876543 233456777899
Q ss_pred CCEEEECC
Q 044973 181 CPIIIVKP 188 (197)
Q Consensus 181 ~pVlvv~~ 188 (197)
+||++--.
T Consensus 193 vPVviaGG 200 (264)
T PRK08227 193 VPIVIAGG 200 (264)
T ss_pred CcEEEeCC
Confidence 99997643
No 311
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=32.32 E-value=2.5e+02 Score=22.01 Aligned_cols=68 Identities=7% Similarity=0.054 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.++.+.+.+++.|+.+.......+....+.+.....++|-||+-..... . ... +-+...+.||+++-.
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--~-----~~~-~~~~~~~ipvV~~~~ 95 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ--D-----PLP-ERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHH-HHHHhCCCCEEEECC
Confidence 3444455666667776654433333455666666678887776432211 1 112 234567888888854
No 312
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.18 E-value=2.8e+02 Score=22.60 Aligned_cols=76 Identities=20% Similarity=0.097 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+.+.. .+++-.-+...+. .-+..+.|++.++|.+++...........-+-.--..|+..++.|+++...+
T Consensus 59 l~~~~~~~~~~-~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 59 LLEIVVEAAAG-RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHHTT-SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHHHccC-ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 34444443332 3555555544344 3455677899999999887765444433222344566888889999998643
No 313
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=31.88 E-value=2.5e+02 Score=23.37 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCCceEEEEec-CC----hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhC--CCCEE
Q 044973 113 LLSRALQICKDKNVKAETLVLT-GD----PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHV--QCPII 184 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~-g~----~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~--~~pVl 184 (197)
..+++...+++. +.+...... ++ ..+.+.+.+++.++|.|| +|.-.- ..++..+.... ..|++
T Consensus 38 ~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~--------~D~aK~ia~~~~~~~p~i 108 (332)
T cd07766 38 VGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST--------LDTAKAVAALLNRGLPII 108 (332)
T ss_pred HHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH--------HHHHHHHHHHhcCCCCEE
Confidence 344455555554 444433222 22 356777778888999988 563221 12333333333 78999
Q ss_pred EECCC
Q 044973 185 IVKPP 189 (197)
Q Consensus 185 vv~~~ 189 (197)
.||-.
T Consensus 109 ~iPTt 113 (332)
T cd07766 109 IVPTT 113 (332)
T ss_pred EEeCC
Confidence 99864
No 314
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=31.75 E-value=86 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCCEEEEec
Q 044973 138 KDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~ 157 (197)
.+.|.++.+++++|+|++|.
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHcCCeEEEEcC
Confidence 34556677777788888854
No 315
>PHA02546 47 endonuclease subunit; Provisional
Probab=31.68 E-value=1.1e+02 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTG 135 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g 135 (197)
...++++...+.+.++ ...+..|
T Consensus 25 ~~~l~~ii~~a~~~~v--D~VliaG 47 (340)
T PHA02546 25 LKFIKQAIEYSKAHGI--TTWIQLG 47 (340)
T ss_pred HHHHHHHHHHHHHcCC--CEEEECC
Confidence 3456666666665443 3344444
No 316
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=31.64 E-value=1.7e+02 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+...+..++.+.|++|+-+....... ..-+..++.....|.+|+...+
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG----P~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG----PTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH----HHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHHHHhCCCCEEEEcCCC
Confidence 34445557899999999877654332 1347789999999999997643
No 317
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=31.47 E-value=1e+02 Score=25.05 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=40.7
Q ss_pred CCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 125 NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 125 gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
|+++.-+-..|+|.+....|.++.--.|+++--.. +...+..+-++.+++..++-+|+.+
T Consensus 20 Gv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~vfiPltV 79 (256)
T COG0107 20 GVNFKNLRDAGDPVELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQVFIPLTV 79 (256)
T ss_pred cccccchhhcCChHHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhceeeeEe
Confidence 67777777779999988888776444455554322 2233445567888888888888876
No 318
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.32 E-value=1.8e+02 Score=20.75 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=23.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
+...+++.|.++.......|-.++|.+..++ .++|+||..
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 4455667787776654445444444444322 148998884
No 319
>PRK07328 histidinol-phosphatase; Provisional
Probab=31.30 E-value=2.8e+02 Score=22.38 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEe-------cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 112 ALLSRALQICKDKNVKAETLVL-------TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~-------~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..++++.+.+.+.|+.+|.-.. .-.|...|++.+.+.+.- +++|+..+..-.-..-=..+..+++.++.+-+
T Consensus 177 ~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~~~ 255 (269)
T PRK07328 177 ELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYTET 255 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCcEE
Confidence 4456777888888877765441 124667899999999987 89998766432210001346789999996655
Q ss_pred -EECCC
Q 044973 185 -IVKPP 189 (197)
Q Consensus 185 -vv~~~ 189 (197)
+...+
T Consensus 256 ~~f~~~ 261 (269)
T PRK07328 256 VVFRAR 261 (269)
T ss_pred EEEcCC
Confidence 44443
No 320
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=31.28 E-value=2.4e+02 Score=21.68 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=10.8
Q ss_pred cCCCEEEEecCCC
Q 044973 148 MHMDLLVVGSRGL 160 (197)
Q Consensus 148 ~~~dliViG~~~~ 160 (197)
..+|.||+|+..+
T Consensus 68 ~~aD~ii~gsPty 80 (200)
T PRK03767 68 ADYDAIIFGTPTR 80 (200)
T ss_pred HhCCEEEEEeccc
Confidence 4799999998765
No 321
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=31.27 E-value=1.5e+02 Score=19.29 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCC-EEEEec
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMD-LLVVGS 157 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~d-liViG~ 157 (197)
.....-.++.+.+...|+.++......++...|-.+ +..++- .||+|.
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a-~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYA-DKLGIPFIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHH-HHTTESEEEEEEH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHH-hhcCCeEEEEECc
Confidence 344566677788888898888776444555555554 444544 555664
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.20 E-value=3.7e+02 Score=23.68 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKR 165 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~ 165 (197)
++....+..++++.......+..++|-.+....++|+|++-+.+++....
T Consensus 252 QLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~ 301 (407)
T PRK12726 252 QFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAE 301 (407)
T ss_pred HHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCH
Confidence 44455555677665321111223333333323468999999988765443
No 323
>PLN02828 formyltetrahydrofolate deformylase
Probab=30.97 E-value=3e+02 Score=22.64 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++.++..+|-.+.+-- . .++++.+|-...+.. +.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g-~------------l~~eI~~ViSn~~~~-------~~---------------- 112 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDG-R------------LPVDITCVISNHERG-------PN---------------- 112 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcC-C------------CCceEEEEEeCCCCC-------CC----------------
Confidence 45789999999999888887765442 2 356666554433210 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec--CChHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT--GDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~--g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
..+...+++.|+++...-.. ....+.+.+..+ ++|+||+....
T Consensus 113 ----------a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 113 ----------THVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred ----------chHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeeeh
Confidence 02445567789988754332 222346666666 69999998544
No 324
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.87 E-value=2.7e+02 Score=22.07 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|..+-.....++.. ..+++.....++|-||+-....... .+.. ..+....+||+++-.
T Consensus 17 ~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~-----~~~~-~~~~~~~iPvV~~d~ 89 (280)
T cd06315 17 GVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAEL-----QAEL-ELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH-----HHHH-HHHHHCCCCEEEecC
Confidence 355566667777776654433333433 3567777788999999964321100 0112 335567899999954
No 325
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=30.82 E-value=2.1e+02 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHH------HHcCCCEEEEec
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAA------EQMHMDLLVVGS 157 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a------~~~~~dliViG~ 157 (197)
.+.++.+.+++.+..+-.....+|.......++ .+.++|.+.+-.
T Consensus 43 ~l~~~i~~l~~~~~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~ 93 (226)
T PF00215_consen 43 ALPEIIEELKERGKPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHP 93 (226)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEG
T ss_pred hHHHHHHHHHHhcCCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEec
Confidence 566666777777766656566677777777777 467888877743
No 326
>PHA02031 putative DnaG-like primase
Probab=30.78 E-value=2e+02 Score=23.76 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=30.0
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEe
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHV 74 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V 74 (197)
++|++++|++.....|...|+.++.. .+..+.++.+
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~------------~~~~v~vv~l 242 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRP------------LLIEGQVIIT 242 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHH------------cCCceEEEEC
Confidence 79999999999999999999999887 5666665554
No 327
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.75 E-value=1.7e+02 Score=21.41 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+.+.+++.|.++.......|-.+.|.+..++ ..+|+||..
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4556778888766555455444445444332 269999884
No 328
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.75 E-value=3.4e+02 Score=23.16 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEe--c-C-----------ChHHHHHHH----HH-HcCCCEEEEecCCCCccccc
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVL--T-G-----------DPKDMICQA----AE-QMHMDLLVVGSRGLGKIKRA 166 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~--~-g-----------~~~~~I~~~----a~-~~~~dliViG~~~~~~~~~~ 166 (197)
.+.+..+.+.++...|.+.|+++-..+. . | ...+.|... ++ +.++|++=+-.....+...-
T Consensus 137 ~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg 216 (340)
T PRK12858 137 INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEG 216 (340)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccc
Confidence 3456667899999999999998765421 1 1 112333333 33 58899988866543211110
Q ss_pred ccc------------cHHHHHHhhCCCCEEEECCC
Q 044973 167 LLG------------SVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 167 ~~g------------s~~~~il~~~~~pVlvv~~~ 189 (197)
++ ....++...++.|+++.-..
T Consensus 217 -~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG 250 (340)
T PRK12858 217 -FDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAG 250 (340)
T ss_pred -cccccccccHHHHHHHHHHHHhhCCCCEEEECCC
Confidence 11 23455677789999998654
No 329
>PRK03673 hypothetical protein; Provisional
Probab=30.66 E-value=3.2e+02 Score=23.90 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
.+...+.+.|+.+......+|-.+.|.+..++ ..+|+||+. .+-+.-. -.-+.+.+.+-..+|+..
T Consensus 25 ~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~t-GGlGpt~---dD~t~~avA~a~g~~L~~ 92 (396)
T PRK03673 25 WLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVN-GGLGPTS---DDLSALAAATAAGEGLVL 92 (396)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEc-CCCCCCC---cccHHHHHHHHcCCCcee
Confidence 34566788899998888888777777766443 268988873 2222211 133455566666666654
No 330
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.59 E-value=2.9e+02 Score=22.31 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHhh--cCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 114 LSRALQICKD--KNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 114 l~~~~~~~~~--~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+..+.+.+++ .|+.+.......++. ..+++.+...++|.||+........ ..... -+...++||+++-.
T Consensus 18 ~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~giPvV~~~~ 90 (303)
T cd01539 18 RKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA-----QTVIN-KAKQKNIPVIFFNR 90 (303)
T ss_pred HHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH-----HHHHH-HHHHCCCCEEEeCC
Confidence 3344444555 455554433333443 3456666777999988864332111 12223 34667899998843
No 331
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.36 E-value=2.7e+02 Score=21.85 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|+.+......+++. ...++.....++|.||+........ ....+ .+.....||+++-.
T Consensus 16 ~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~-----~~~i~-~~~~~~iPvV~~~~ 88 (282)
T cd06318 16 ALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGL-----VPAVA-AAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccch-----HHHHH-HHHHCCCCEEEecC
Confidence 355556666677788776543334543 3455666777999999965332110 11122 33467899998854
No 332
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=30.04 E-value=1.4e+02 Score=26.15 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
-.+.|.+.+++.++|-||.-....-.....-...+-..+..+.++|+|.+--.
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D 390 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETD 390 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcC
Confidence 46779999999999999997765443332212233455656689999999544
No 333
>PRK12361 hypothetical protein; Provisional
Probab=29.93 E-value=3.3e+02 Score=24.59 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+++.+.+++. ++++...... .-+..+.+.+.+.++|+||+.. |.+. +..+++.++ +.++|+-++|-.
T Consensus 260 ~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~G-GDGT-----l~ev~~~l~-~~~~~lgiiP~G 330 (547)
T PRK12361 260 EYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACG-GDGT-----VTEVASELV-NTDITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEEC-CCcH-----HHHHHHHHh-cCCCCEEEecCC
Confidence 3455555555553 5555444332 3456677666666788877642 2222 234455554 456899999854
No 334
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=29.90 E-value=2.1e+02 Score=22.96 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
.+++.+.++..|+.+...-.. +.+.+... ++|.|+++--....+.+.+.++-.+.+|+
T Consensus 50 ~~~~~~af~~lG~~v~~l~~~----~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~ 107 (233)
T PRK05282 50 TAKVAEALAPLGIEVTGIHRV----ADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred HHHHHHHHHHCCCEEEEeccc----hhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence 345666677777775543222 22334444 78888887554344444444443444443
No 335
>PRK09271 flavodoxin; Provisional
Probab=29.89 E-value=1.8e+02 Score=21.48 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=5.7
Q ss_pred CCCEEEEecC
Q 044973 149 HMDLLVVGSR 158 (197)
Q Consensus 149 ~~dliViG~~ 158 (197)
++|+|++|+.
T Consensus 51 ~~d~vilgt~ 60 (160)
T PRK09271 51 DYDLYLLGTW 60 (160)
T ss_pred cCCEEEEECc
Confidence 4566666654
No 336
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=29.81 E-value=2.6e+02 Score=21.49 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=10.8
Q ss_pred cCCCEEEEecCCC
Q 044973 148 MHMDLLVVGSRGL 160 (197)
Q Consensus 148 ~~~dliViG~~~~ 160 (197)
.++|.||+|+..+
T Consensus 67 ~~aD~ii~GSPty 79 (197)
T TIGR01755 67 ADYDAIIFGTPTR 79 (197)
T ss_pred HHCCEEEEEeccc
Confidence 4799999999764
No 337
>PLN02476 O-methyltransferase
Probab=29.71 E-value=1.8e+02 Score=24.15 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHH---HcCCCEEEEecCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAE---QMHMDLLVVGSRG 159 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~---~~~~dliViG~~~ 159 (197)
..+.+++.+++.|+.-...+..|+..+.+-+... ...+|+|++....
T Consensus 155 ~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 155 SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 3445556666778876677778988887766643 2479999998764
No 338
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.67 E-value=2.7e+02 Score=21.70 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+...+++.|+++......+++.. ..++.....++|.||++........ .. -..+...++||+++-.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~-----~~-l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 16 IMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAV-----TL-LKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhH-----HH-HHHHHHCCCCEEEEec
Confidence 3555566666777777655433344432 3333344568999988653321111 11 2345567899988853
No 339
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.67 E-value=2.9e+02 Score=22.03 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDN 49 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~l 49 (197)
++++.+.+..+|..|+-.|...
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~ 23 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE 23 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh
Confidence 4778899999999999888776
No 340
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=29.62 E-value=3.5e+02 Score=23.05 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCceEEEEecC-------ChHHHHHHHHHHcCC----CEEE-EecCCCCcccccccccHHHHHH--hhCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-------DPKDMICQAAEQMHM----DLLV-VGSRGLGKIKRALLGSVSDYCA--HHVQ 180 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-------~~~~~I~~~a~~~~~----dliV-iG~~~~~~~~~~~~gs~~~~il--~~~~ 180 (197)
+++...++..|+.+...+..+ +..+.+.+.+.+.++ |+|| +|.-.- +.++..+. ....
T Consensus 43 ~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v--------~D~ak~~A~~~~rg 114 (354)
T cd08199 43 KKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVL--------TDVAGLAASLYRRG 114 (354)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHH--------HHHHHHHHHHhcCC
Confidence 455666666788777544432 234555666667677 9888 553221 23333343 4457
Q ss_pred CCEEEECCC
Q 044973 181 CPIIIVKPP 189 (197)
Q Consensus 181 ~pVlvv~~~ 189 (197)
+|++.||-.
T Consensus 115 ~p~i~VPTT 123 (354)
T cd08199 115 TPYVRIPTT 123 (354)
T ss_pred CCEEEEcCc
Confidence 899999874
No 341
>PRK07329 hypothetical protein; Provisional
Probab=29.51 E-value=2.9e+02 Score=22.02 Aligned_cols=72 Identities=13% Similarity=-0.010 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEe----c--CChHHHHHHHHHHcCCCEEEEecCCCCcccc-cccccHHHHHHhhCCCCEE
Q 044973 112 ALLSRALQICKDKNVKAETLVL----T--GDPKDMICQAAEQMHMDLLVVGSRGLGKIKR-ALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~----~--g~~~~~I~~~a~~~~~dliViG~~~~~~~~~-~~~gs~~~~il~~~~~pVl 184 (197)
...+++.+.+.+.|+.+|.-.. . ......+++.+.+.+...|++|+..+..-.- .-+ ..+..++++++.+.+
T Consensus 165 ~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~-~~a~~~l~~~g~~~~ 243 (246)
T PRK07329 165 PQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNF-DDAQKLLKEHGIKEI 243 (246)
T ss_pred HHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH-HHHHHHHHHcCCceE
Confidence 4455666777777776654331 1 1233667888988888778999877653221 111 356778888776544
No 342
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.47 E-value=1.7e+02 Score=20.42 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=38.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+.++..|..++..-.. ..++.++.. ++|++.+|-.-+ +. -...+++......||-++++
T Consensus 21 m~~aA~~kg~~~~I~A~s---~~e~~~~~~--~~DvvLlGPQv~-----y~-~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 21 MKKAAESKGKDVTIEAYS---ETELSEYID--NADVVLLGPQVR-----YM-LKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHhCCCceEEEEec---hhHHHHhhh--cCCEEEEChHHH-----HH-HHHHHHHhcccCCCeEEeCH
Confidence 334444567776654433 344555555 899999995432 22 23456677778889999875
No 343
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=29.45 E-value=3e+02 Score=22.02 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=24.5
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|.+++|++..-..|...+..++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~ 180 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKK 180 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999887
No 344
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=29.35 E-value=3e+02 Score=22.08 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=26.9
Q ss_pred HhhcCCceEEEEecC---ChHHHHHHHHHHcCCCEEEEec
Q 044973 121 CKDKNVKAETLVLTG---DPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 121 ~~~~gi~~~~~v~~g---~~~~~I~~~a~~~~~dliViG~ 157 (197)
++..|+++......| .-.+.+.+..+..++|.||.|.
T Consensus 55 Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~Ga 94 (223)
T COG2102 55 AEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGA 94 (223)
T ss_pred HHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEch
Confidence 344577766655555 4667788888888899999986
No 345
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.33 E-value=2e+02 Score=20.06 Aligned_cols=41 Identities=2% Similarity=-0.074 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCE-EEEecC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDL-LVVGSR 158 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dl-iViG~~ 158 (197)
++...+++.|+.++.... .....-+++|+..++.. +++|..
T Consensus 46 ~la~~LR~~gi~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 46 EISEELRELGFSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHHCCCEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 445556677999988765 56666777888888884 555643
No 346
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=29.27 E-value=3e+02 Score=22.03 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=34.9
Q ss_pred CCceEEEEec--CChHHHHHHHHHH---cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 125 NVKAETLVLT--GDPKDMICQAAEQ---MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 125 gi~~~~~v~~--g~~~~~I~~~a~~---~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.++.+.... ....+++.++|++ .++|+||+-+=+++...+ +.+-+.++.||++-
T Consensus 149 ~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r-------~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 149 GNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMR-------DIVQRALGKPVLLS 208 (221)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHH-------HHHHHHhCCCEEeH
Confidence 4444443332 1345667766664 579999999888764332 44566788999874
No 347
>PRK08417 dihydroorotase; Provisional
Probab=29.19 E-value=1.4e+02 Score=25.57 Aligned_cols=27 Identities=7% Similarity=-0.175 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 39 SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 39 s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
...++..++.+|+. .+++++++|+...
T Consensus 180 E~~~v~~~~~la~~------------~~~~lhi~hvS~~ 206 (386)
T PRK08417 180 ETKEVAKMKELAKF------------YKNKVLFDTLALP 206 (386)
T ss_pred HHHHHHHHHHHHHH------------hCCCEEEEeCCCH
Confidence 44578899999999 8899999999765
No 348
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=29.16 E-value=3.3e+02 Score=22.51 Aligned_cols=26 Identities=12% Similarity=-0.093 Sum_probs=18.1
Q ss_pred CEEEEEeCCChhh----------HHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGES----------FYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s----------~~al~~a~~la~~ 52 (197)
..+.|.+|+.+.- ....+|-..+.+.
T Consensus 14 ~~lcvGlDP~~~~l~~~~~~~~~~~~~~f~~~ivd~ 49 (278)
T PRK00125 14 GSLCVGLDPHPSLLPAWGLSGDADGLFEFCRIIVDA 49 (278)
T ss_pred CCEEEEECCChHhcccccccccHHHHHHHHHHHHHh
Confidence 3588899987644 4456667777777
No 349
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=29.11 E-value=1.2e+02 Score=23.11 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
.+.++...++..+.++...+-.|-..+.|.++++. ++|.|.+|+-
T Consensus 113 ~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~-gvD~isvg~~ 157 (169)
T PF01729_consen 113 DLKEAVEELRELNPRVKIEASGGITLENIAEYAKT-GVDVISVGSL 157 (169)
T ss_dssp HHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT-T-SEEEECHH
T ss_pred HHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc-CCCEEEcChh
Confidence 34444454445455677766656677889999964 7999999973
No 350
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=28.99 E-value=3.1e+02 Score=22.18 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
+..-+.+..++..+++.|+.++....+ -|..+.|..++....+|+|=+=+...+.+ ..+.+.++.
T Consensus 119 ~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi-----~ntieAvly 184 (248)
T PF07476_consen 119 EAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGI-----NNTIEAVLY 184 (248)
T ss_dssp HHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSST-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccch-----hhHHHHHHH
Confidence 334457788899999999999987765 58999999999999999999988776654 245555554
No 351
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=1.5e+02 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=30.4
Q ss_pred cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 148 MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 148 ~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+++.||+|+...+.+. ++.-+....++-.|-|++.|-+
T Consensus 60 e~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 60 EGPEVIVVGTGQSGMLE---LSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred cCCcEEEEecCceeEEE---eCHHHHHHHHhcCCeEEEeCCH
Confidence 58999999987765443 4667788888889999988854
No 352
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=28.83 E-value=4e+02 Score=23.36 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++|++++.+.-+..-++.|... . .+..|+.+.+.=.. . .+..+...+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e---~------------~~~eVia~tadvGQ---------------~-eed~~~i~eK 52 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKE---K------------GGAEVIAVTADVGQ---------------P-EEDLDAIREK 52 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHH---h------------cCceEEEEEEeCCC---------------C-hHHhHHHHHH
Confidence 47999999998777777776543 3 55666666553221 0 1222322222
Q ss_pred HHH----------HHHHHHHHHHHHHhhcCCceEEEEecC------ChHHHHHHHHHHcCCCEEEEecCCCCccc
Q 044973 106 QEE----------NSAALLSRALQICKDKNVKAETLVLTG------DPKDMICQAAEQMHMDLLVVGSRGLGKIK 164 (197)
Q Consensus 106 ~~~----------~~~~~l~~~~~~~~~~gi~~~~~v~~g------~~~~~I~~~a~~~~~dliViG~~~~~~~~ 164 (197)
..+ ..+++.+.+...+-..+..++....-| -.++.+++.|++.+++.|.-|+.+.++-.
T Consensus 53 A~~~Ga~~~~viD~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ 127 (403)
T COG0137 53 ALELGAEEAYVIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ 127 (403)
T ss_pred HHHhCCceEEEeecHHHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCce
Confidence 221 113344444444444444455432222 24789999999999999999998876554
No 353
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=28.46 E-value=1.6e+02 Score=22.99 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCChhhHH-HHHHHHHHhcc
Q 044973 25 NEMKVMVALDESGESFY-ALKWALDNLFG 52 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~-al~~a~~la~~ 52 (197)
.-++|++++.++-.+.+ +++.+-.+.+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~ 32 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE 32 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 34799999999999888 58777666444
No 354
>PRK06247 pyruvate kinase; Provisional
Probab=28.36 E-value=1.7e+02 Score=26.36 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~~ 190 (197)
.+...+..|+..++.+||+-++. |+++..+.+.-| |||+.+-+.+
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s---------G~ta~~isk~RP~~pI~a~t~~~ 402 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS---------GDTALRAARERPPLPILALTPNP 402 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 55666778888999999997654 567777777655 9999987643
No 355
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=28.31 E-value=2.4e+02 Score=20.66 Aligned_cols=82 Identities=9% Similarity=0.030 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
....+.+..+.+..+..|.++...+..+ ...+.+.+.....++|-++.-.... .............+++.+.+..++
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lV 94 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLV 94 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 4455677777777777788888766654 3455566666668999777765442 222222345666778888888888
Q ss_pred EECCC
Q 044973 185 IVKPP 189 (197)
Q Consensus 185 vv~~~ 189 (197)
+++..
T Consensus 95 l~~~t 99 (164)
T PF01012_consen 95 LFGST 99 (164)
T ss_dssp EEESS
T ss_pred EEcCc
Confidence 88753
No 356
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=28.13 E-value=3.9e+02 Score=22.98 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=23.3
Q ss_pred hcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 123 DKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 123 ~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..|++++..-........|..... ++|.||+|+...
T Consensus 276 ~~g~~v~~~~~~~~~~~~i~~~~~--~~d~ii~GspT~ 311 (394)
T PRK11921 276 NKDVTVKLYNSAKSDKNDIITEVF--KSKAILVGSSTI 311 (394)
T ss_pred CCCCeEEEEECCCCCHHHHHHHHH--hCCEEEEECCCc
Confidence 456777654444444556655444 699999999764
No 357
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.12 E-value=2.8e+02 Score=21.38 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+...+++.|+.+.......++. ...++.....++|-||++....... ... -..+.+.++|++.+-.
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~-----~~~-l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 17 LKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAV-----VPA-VKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHH-----HHH-HHHHHHCCCcEEEEcc
Confidence 34444555555677665433333443 2445555566899988864321100 011 1234567899998844
No 358
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=28.02 E-value=2.1e+02 Score=21.41 Aligned_cols=40 Identities=5% Similarity=0.085 Sum_probs=23.7
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHH----HcCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAE----QMHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~----~~~~dliViG 156 (197)
+...+++.|..+.......|-.+.|.+..+ ..++|+||..
T Consensus 27 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 27 LVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred HHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345566778877655444544444444433 3479999884
No 359
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.95 E-value=1.8e+02 Score=23.21 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCCCC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPPPK 191 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~~~ 191 (197)
...+.+.+.+.+.|.|++|.+..-. .....+...+-+... .||++.|....
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4567788888899999999765221 122344444433344 89999987654
No 360
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=27.92 E-value=1.1e+02 Score=20.42 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
+.+.+.+++.|+.+..+.....-...-+...+-..+|+||+.....
T Consensus 18 e~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 18 EALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 3345556677888777766543222223222223799999987653
No 361
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=27.75 E-value=2.8e+02 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+..+|++.+++.|++|.+..
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~~ 122 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCET 122 (201)
T ss_pred HHHHHHHHHCCCCEEEEEeccC
Confidence 4456889999999999998643
No 362
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.64 E-value=61 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.-.+.|+++|++.++||+|+|...
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcH
Confidence 346889999999999999999754
No 363
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=27.62 E-value=2.8e+02 Score=21.10 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
....+...+++.|+.+...-..+++ ....++.....++|.+|+........ . .-..+.+.+.|++.+...
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~------~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAP------T-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcch------h-HHHHhhhcCCCEEEeccC
Confidence 4444445555567777655444443 23444444445899999875443211 1 234567788999988654
No 364
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.62 E-value=1.8e+02 Score=18.86 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCC-EEEEecC
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMD-LLVVGSR 158 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~d-liViG~~ 158 (197)
..+...++..|+.++.... +.....-++.|+..++. ++++|..
T Consensus 21 ~~la~~Lr~~g~~v~~d~~-~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 21 EKLYAELQAAGVDVLLDDR-NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHCCCEEEEECC-CCCcccchhHHHhcCCCEEEEECCc
Confidence 3455556677888887554 44555666777888888 5555643
No 365
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.48 E-value=1.3e+02 Score=24.43 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 142 CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 142 ~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
....++.++|.||.=.+|..+....+ ...+..++||++|.++..
T Consensus 183 ~aL~~~~~i~~lVtK~SG~~g~~eKi------~AA~~lgi~vivI~RP~~ 226 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSGGAGTEAKL------EAARELGIPVVMIARPAL 226 (248)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHHHH------HHHHHcCCeEEEEeCCCC
Confidence 45677889999998666543222221 467788999999976543
No 366
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=27.45 E-value=1.9e+02 Score=20.84 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
-+.+.+++.|+.+.......|-.+.|.+..+. .+.|+||.-
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~Vitt 63 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITT 63 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEc
Confidence 35566677888776544444444444433322 266999883
No 367
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=27.42 E-value=2.2e+02 Score=24.22 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcc
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKI 163 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~ 163 (197)
.++..+...+++.|.++....+.- +.+.+..+..+++.+++|.++.+..
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~ 62 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLY 62 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHH
Confidence 467778888888888887766654 4566666788999999999885433
No 368
>PRK14057 epimerase; Provisional
Probab=27.36 E-value=3e+02 Score=22.49 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCc---------eEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 113 LLSRALQICKDKNVK---------AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~---------~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.+.+..+.+++.|.+ +-.-+-.+.+.+.|..+.. .+|+|.+-+-..+...+.+..+..++|-
T Consensus 111 ~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~--~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~ 181 (254)
T PRK14057 111 HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS--DVEVIQLLAVNPGYGSKMRSSDLHERVA 181 (254)
T ss_pred CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH--hCCEEEEEEECCCCCchhccHHHHHHHH
Confidence 355566777777763 5555555789999999998 6898888776666656666665555543
No 369
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=27.21 E-value=2.2e+02 Score=19.93 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCC-CEEEEecCCCCcccccccccHHHHHHhhCC---CCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHM-DLLVVGSRGLGKIKRALLGSVSDYCAHHVQ---CPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~-dliViG~~~~~~~~~~~~gs~~~~il~~~~---~pVlvv~~~ 189 (197)
.++...+...+..++...... +....|.......+. |.||+..-+ +. +..+...++.... +|+-++|-.
T Consensus 18 ~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGD-GT-----l~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 18 KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGD-GT-----LNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESH-HH-----HHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCc-cH-----HHHHHHHHhhcCCCccceEEEecCC
Confidence 566667777777777766654 677777775555555 777775332 21 2234444444332 488888853
No 370
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=27.11 E-value=1.9e+02 Score=23.40 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
....+..+.+.+++.|+.+...+ +|..+=+++|.+.++|.|=+=+..+
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSLFi---dP~~~qi~~A~~~GAd~VELhTG~y 158 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSLFI---DPDPEQIEAAAEVGADRIELHTGPY 158 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEEechhh
Confidence 34678888899999999998877 5777788999999999998865443
No 371
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=27.08 E-value=3.1e+02 Score=21.52 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC-------CcccccccccHHHHHHhhCCCCEEEECCCCCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL-------GKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQH 193 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~-------~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~~ 193 (197)
..+.|.+.+...++++||+-.-.. .......+-.....+.....|.|+++....+..
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 345666666667999999984211 010011111233445666789999998765543
No 372
>PRK14561 hypothetical protein; Provisional
Probab=27.02 E-value=2.9e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=15.7
Q ss_pred CEEEEEeCCChhhHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWA 46 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a 46 (197)
++|+|++.+.-+|..++..+
T Consensus 1 mkV~ValSGG~DSslll~~l 20 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILL 20 (194)
T ss_pred CEEEEEEechHHHHHHHHHH
Confidence 36999999998888776544
No 373
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.01 E-value=1.2e+02 Score=23.63 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhc-CCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC---CCCEEEE
Q 044973 113 LLSRALQICKDK-NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV---QCPIIIV 186 (197)
Q Consensus 113 ~l~~~~~~~~~~-gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv 186 (197)
....+.+.+... |+.+....... ...+.+... ++|+|+++--......+.+.++-.+.+++.. ..|++-+
T Consensus 47 ~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~--~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~ 120 (212)
T cd03146 47 YTARFYAAFESLRGVEVSHLHLFD--TEDPLDALL--EADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGW 120 (212)
T ss_pred HHHHHHHHHhhccCcEEEEEeccC--cccHHHHHh--cCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEE
Confidence 333455556666 77666443322 333344444 7999999873333444445455555555543 5666544
No 374
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=26.73 E-value=2.3e+02 Score=19.88 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCccc-------------ccccccHHHHHHhhCCCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIK-------------RALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~-------------~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.............+|+||+........- ..--...-+.++..++.|++-+++..
T Consensus 45 ~~~~~~~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~ 111 (126)
T PF10881_consen 45 ERKEAFNRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKD 111 (126)
T ss_pred hHHHHHHHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4566667777789999999844322211 11223467889999999999997653
No 375
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=26.62 E-value=3.8e+02 Score=22.34 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=33.4
Q ss_pred CCceEEEEecCCh-----HHHHHHHHHHcCCCEEEEecCCC-CcccccccccHHHHHHhhCCCCEEE
Q 044973 125 NVKAETLVLTGDP-----KDMICQAAEQMHMDLLVVGSRGL-GKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 125 gi~~~~~v~~g~~-----~~~I~~~a~~~~~dliViG~~~~-~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
++++...++.|.- ...+++..++.+++.|.+=.+.. .......--.....+....++||+.
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE
Confidence 4677777776532 46777888889999998855432 1111111223445566677777765
No 376
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=26.51 E-value=1.4e+02 Score=25.83 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=37.6
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
....+-+|.|...+..+|.-.|..++++|+.. ...+|.++|+.-.
T Consensus 23 if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~-----------~~~~i~VlfiD~E 67 (407)
T COG3969 23 IFNTFPRVCVSFSGGKDSGLMLHLVAEVAREN-----------GRDKISVLFIDWE 67 (407)
T ss_pred HHhcCCeEEEEecCCCchhHHHHHHHHHHHHh-----------CCCceEEEEEcch
Confidence 34678899999999999999999999999994 4457888887544
No 377
>PRK07945 hypothetical protein; Provisional
Probab=26.48 E-value=2.3e+02 Score=24.01 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCceEEEEec--CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCC
Q 044973 115 SRALQICKDKNVKAETLVLT--GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~--g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~p 182 (197)
+++.+.+.+.|+.+|.-... -.|...|++.+.+.++- +++|+..+..-.=..++. +..+++.+.+|
T Consensus 248 ~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~-vtigSDAH~p~~v~~~~~-~~~~a~~~g~~ 315 (335)
T PRK07945 248 EAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCL-FSIDTDAHAPGQLDWLGY-GCERAEEAGVP 315 (335)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCe-EEecCCCCChhhcchHHH-HHHHHHHcCCC
Confidence 56667777778777754422 25888999999999985 799987664322112233 66777777754
No 378
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=26.40 E-value=1.8e+02 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCEEEEecC
Q 044973 141 ICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~ 158 (197)
..+.++..+..+|++...
T Consensus 125 ~adl~~~l~~pvilV~~~ 142 (222)
T PRK00090 125 LADLAKQLQLPVILVVGV 142 (222)
T ss_pred HHHHHHHhCCCEEEEECC
Confidence 344555555666555543
No 379
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=26.34 E-value=3e+02 Score=21.06 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=18.3
Q ss_pred EEEEEeCCChhh-HHHHHHHHHHhcc
Q 044973 28 KVMVALDESGES-FYALKWALDNLFG 52 (197)
Q Consensus 28 ~ILv~~d~s~~s-~~al~~a~~la~~ 52 (197)
||++++-+|... ...++.+..+++.
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~ 26 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNR 26 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHh
Confidence 588999998444 4477778778766
No 380
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=26.32 E-value=3.4e+02 Score=25.37 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 140 MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 140 ~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
-++++.+..++|...+|.|....-.. ....++..+++|++..
T Consensus 101 p~i~amN~lgyDa~tlGNHEFd~G~~-----~L~~~~~~a~fP~l~A 142 (649)
T PRK09420 101 PVYKAMNTLDYDVGNLGNHEFNYGLD-----YLKKALAGAKFPYVNA 142 (649)
T ss_pred hHHHHHHhcCCcEEeccchhhhcCHH-----HHHHHHhcCCCCEEEE
Confidence 37888999999999999998764333 3356778899999855
No 381
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=26.32 E-value=4.7e+02 Score=23.38 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh------CCCCEEEECC
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH------VQCPIIIVKP 188 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~------~~~pVlvv~~ 188 (197)
.+...++..++.++...... .-+..+++.+...++|.||+.. +.+- +..+...++.. .+.|+-++|-
T Consensus 134 ~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vG-GDGT-----lnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 134 VVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEc-CCCH-----HHHHHHHHhhCccccccccCceEEecC
Confidence 45667788888888766553 4566666666566788777642 3232 23445555533 2589999986
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 208 GT 209 (481)
T PLN02958 208 GT 209 (481)
T ss_pred cC
Confidence 53
No 382
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=26.30 E-value=3.1e+02 Score=21.24 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......+++ ...+++.+...++|-||+...... .. -+...+.||+.+-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~----------~~-~~~~~gipvv~~~~~ 84 (265)
T cd06291 16 ELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLG----------IE-EYENIDLPIVSFDRY 84 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCCcC----------HH-HHhcCCCCEEEEeCC
Confidence 34445566667777776554333333 345556677778999998654311 11 334668899988654
No 383
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.29 E-value=3e+02 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=24.8
Q ss_pred CceEEEEecCC-----hHHHHHHHHHHcCCCEEEEec
Q 044973 126 VKAETLVLTGD-----PKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 126 i~~~~~v~~g~-----~~~~I~~~a~~~~~dliViG~ 157 (197)
+++++.++.|. ....|.+.+++.+++.+.+=.
T Consensus 137 iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHg 173 (323)
T COG0042 137 IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHG 173 (323)
T ss_pred CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEec
Confidence 78888887773 245799999999999998833
No 384
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=26.13 E-value=2.3e+02 Score=22.51 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH---cCCCEEEEecC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ---MHMDLLVVGSR 158 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~---~~~dliViG~~ 158 (197)
..+.+++.++..|+.-...+..|+..+.+-+.... ..+|+|++...
T Consensus 105 ~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 105 AYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 33445555566677655667778887776665443 47999999754
No 385
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=26.07 E-value=2.2e+02 Score=23.08 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEecCCC
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVGSRGL 160 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG~~~~ 160 (197)
+.++..++..|+.-...+..|+..+.+-+.... ..+|+|++-....
T Consensus 118 ~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~ 167 (247)
T PLN02589 118 ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKD 167 (247)
T ss_pred HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHH
Confidence 345566677787766777789888877776643 4799999986543
No 386
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.06 E-value=3.1e+02 Score=21.14 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
....+.+.+++.|+.+.......++ ...+++.....++|.||+....... . ....+ ....||+++-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-------~-~~~~~-~~~ipvv~~~~ 85 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP-------T-ALTAL-AKLPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH-------H-HHHHH-hcCCCEEEEec
Confidence 4455556666678777654433344 3455666777789988874322110 1 11222 34789988843
No 387
>PLN02461 Probable pyruvate kinase
Probab=26.04 E-value=1.8e+02 Score=26.40 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEEC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVK 187 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~ 187 (197)
.+...++.|...++.+||+-++. |.++..+.+.-| |||+.+-
T Consensus 383 ia~sav~~A~~l~a~aIiv~T~s---------G~tA~~iSk~RP~~pIia~t 425 (511)
T PLN02461 383 LASSAVRTANKVKASLIVVLTRG---------GTTARLVAKYRPAVPILSVV 425 (511)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 55666788889999999997654 567777777765 9999994
No 388
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=25.63 E-value=4.2e+02 Score=22.49 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
++.+.+++.|.++.. +..||+.-.|.......++|++ +|.-
T Consensus 168 ~lI~eiR~~Gari~L-i~DGDVa~ai~~~~~~s~vD~~-~GiG 208 (321)
T TIGR00330 168 AVIAEMQQLGVRVFA-IPDGDVAASILTCMPDSEVDVL-YGIG 208 (321)
T ss_pred HHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EEcC
Confidence 455666777888876 4468998888888887888875 4543
No 389
>PRK05920 aromatic acid decarboxylase; Validated
Probab=25.63 E-value=1.8e+02 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=21.8
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
+||++++.++-.+.++++..-.|.+.
T Consensus 4 krIllgITGsiaa~ka~~lvr~L~~~ 29 (204)
T PRK05920 4 KRIVLAITGASGAIYGVRLLECLLAA 29 (204)
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHC
Confidence 79999999999888888877777554
No 390
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.58 E-value=1.1e+02 Score=23.88 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~i 175 (197)
...+..+.+++.|+++-.-+-.+.+.+.+..+.. ..|+|.+-+-..+.-.+.+...+.++|
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~PG~~Gq~f~~~~~~KI 153 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVDMVLVMSVEPGFGGQKFIPEVLEKI 153 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-TTTSSB--HGGHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcCEEEEEEecCCCCcccccHHHHHHH
Confidence 3445667777789988887777888888888888 799987777666555555555555543
No 391
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=25.57 E-value=4.2e+02 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
++.+.+++.|.++.. +..||+.-.|.....+.++|++ +|.-
T Consensus 168 ~lI~eiR~~GarI~L-i~DGDVa~ai~~~~~~s~vD~~-~GiG 208 (321)
T PRK12388 168 AAIEEATQLGVKVFA-LPDGDVAASVLTCWQDNPYDVM-YTIG 208 (321)
T ss_pred HHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EEcC
Confidence 455667777888877 3468998888888787888875 4543
No 392
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=25.50 E-value=1.8e+02 Score=26.02 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
..+...++.|+..++++||+-+.. |+++..+.+.-| |||+.+-+.
T Consensus 360 ~ia~~a~~~a~~~~akaIVv~T~S---------G~TA~~vSr~rp~~PIiAvT~~ 405 (473)
T TIGR01064 360 AIALSAVEAAEKLDAKAIVVLTES---------GRTARLLSKYRPNAPIIAVTPN 405 (473)
T ss_pred HHHHHHHHHHhhcCCCEEEEEcCC---------hHHHHHHHhhCCCCCEEEEcCC
Confidence 355666788889999999998654 566666766655 999998764
No 393
>PRK07627 dihydroorotase; Provisional
Probab=25.38 E-value=1.6e+02 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 39 SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 39 s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
...++..++.+|+. .+++++++|+...
T Consensus 211 E~~av~r~~~la~~------------~~~~~hi~HvSs~ 237 (425)
T PRK07627 211 ETIALHTIFELMRV------------TGARVHLARLSSA 237 (425)
T ss_pred HHHHHHHHHHHHHH------------HCCcEEEEeCCCH
Confidence 44588999999999 8899999999765
No 394
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=25.30 E-value=3.6e+02 Score=21.63 Aligned_cols=69 Identities=13% Similarity=-0.112 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCceEEEEecCC---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEE
Q 044973 116 RALQICKDKNVKAETLVLTGD---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIV 186 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv 186 (197)
++.+.++..++++...++.+. ....+.+.+++.++|.|.+-....+. ...--....++-...+ +||+-.
T Consensus 125 ~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~--~~a~~~~I~~i~~~~~~ipIIgN 197 (231)
T TIGR00736 125 EFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK--PYADMDLLKILSEEFNDKIIIGN 197 (231)
T ss_pred HHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC--chhhHHHHHHHHHhcCCCcEEEE
Confidence 333334444778888887653 34478888999999999884322111 0001133455555554 887754
No 395
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=25.29 E-value=3.3e+02 Score=21.25 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
...+..+.+.+++.|+++......++. ...+++.....++|-||+......... ... ..+.+...||+++-.
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~i-~~~~~~~iPvV~~~~ 88 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWD-----PVL-KEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccch-----HHH-HHHHHCCCCEEEEec
Confidence 345666677777778877764333343 234455566678999998643321111 111 235567899999864
No 396
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=25.23 E-value=2e+02 Score=22.15 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEEEecCC--------CC-------cccccccccHHHHHHh
Q 044973 117 ALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLVVGSRG--------LG-------KIKRALLGSVSDYCAH 177 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliViG~~~--------~~-------~~~~~~~gs~~~~il~ 177 (197)
+.+.+++.|+.+........ ....+.+..+...+|.|++.+.. .. ...-.-+|..+...++
T Consensus 132 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~ 211 (231)
T PF02602_consen 132 LPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAKALR 211 (231)
T ss_dssp HHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHHHHH
Confidence 44666777877765555443 56667777777789999997732 11 1122457888888889
Q ss_pred hCCCCEEEECCCCC
Q 044973 178 HVQCPIIIVKPPPK 191 (197)
Q Consensus 178 ~~~~pVlvv~~~~~ 191 (197)
+..+++.+++..+.
T Consensus 212 ~~g~~~~~va~~~~ 225 (231)
T PF02602_consen 212 ELGFKVDIVAERPT 225 (231)
T ss_dssp HTT-SCSEEESSSS
T ss_pred HcCCCceEECCCCC
Confidence 99988877766543
No 397
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=24.97 E-value=3.7e+02 Score=21.72 Aligned_cols=70 Identities=9% Similarity=-0.025 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+.+.+.+++.|+.+...-...+.. ..+++.....++|.||+........ ..... -+...++||+++-.
T Consensus 16 ~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~-----~~~l~-~~~~~~iPvV~~d~ 87 (302)
T TIGR02634 16 DRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVL-----SNAVQ-EAKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHH-----HHHHH-HHHHCCCeEEEecC
Confidence 44455566677677665433233433 3455666667888888864332111 12222 24566788888843
No 398
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.87 E-value=3.4e+02 Score=22.82 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.+.+++.++|.|| +|.... ..++..+......|++.||-.
T Consensus 64 ~v~~~~~~~~~~~~D~iIavGGGs~--------~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 64 NIERLAAQAKENGADVIIGIGGGKV--------LDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHH--------HHHHHHHHHHhCCCEEEecCc
Confidence 456777788888999777 442211 234444444457899999964
No 399
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.83 E-value=1.7e+02 Score=22.08 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
...+|++.+++.++|+|++|-.... .+. .+.+...+.+.+|++.
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~Pk--QE~----~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGAPK--QEL----WIARHKDRLPVPVAIG 130 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCH--HHH----HHHHHHHHCCCCEEEE
Confidence 3456899999999999999976532 112 2234455556777664
No 400
>PLN02417 dihydrodipicolinate synthase
Probab=24.82 E-value=3.9e+02 Score=21.83 Aligned_cols=62 Identities=15% Similarity=0.001 Sum_probs=35.6
Q ss_pred CceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 126 VKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+++-..+-..+. .-++.+.|++.++|.+++...........-+-..-..|+..+ ||++...+
T Consensus 71 ~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P 134 (280)
T PLN02417 71 IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVP 134 (280)
T ss_pred CcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEECh
Confidence 444444433244 344556788999999999876544332221222334455544 99998554
No 401
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.78 E-value=3.9e+02 Score=21.83 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHH---HHHHHHcCCCEEEEecCCCCccc
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMI---CQAAEQMHMDLLVVGSRGLGKIK 164 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I---~~~a~~~~~dliViG~~~~~~~~ 164 (197)
+++..+++..|+.+.......++.+.+ +..+...++|+|++-+.++....
T Consensus 117 ~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d 169 (272)
T TIGR00064 117 EQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNK 169 (272)
T ss_pred HHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcch
Confidence 345555666565543222223555433 34455678999999998876543
No 402
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.77 E-value=3.1e+02 Score=23.43 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC--cccccccccHH-HHHHhhCCCCEEEECC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG--KIKRALLGSVS-DYCAHHVQCPIIIVKP 188 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~--~~~~~~~gs~~-~~il~~~~~pVlvv~~ 188 (197)
..+.+.|+++..... .++..+..+..+|.|++|+..-. +.- .-.|+.. .-+.++..+|++++-|
T Consensus 201 ~eL~~~GI~vtlI~D-----sa~~~~M~~~~Vd~VivGAd~I~anGv~-NKiGT~~lA~~Ak~~~vPfyV~ap 267 (339)
T PRK06036 201 WELMQDNIPVTLITD-----SMAGIVMRQGMVDKVIVGADRITRDAVF-NKIGTYTHSVLAKEHEIPFYVAAP 267 (339)
T ss_pred HHHHHcCCCEEEEeh-----hHHHHHhccCCCCEEEECccchhhcCee-hhhhHHHHHHHHHHhCCCEEEEee
Confidence 344467888886543 23444555556999999997632 222 2345544 4456778899999855
No 403
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=24.62 E-value=98 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcc
Q 044973 141 ICQAAEQMHMDLLVVGSRGLGKI 163 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~~~~~~ 163 (197)
..+.|+..++..|++...+.+.+
T Consensus 121 n~dia~~L~a~vIlV~~~~~g~i 143 (199)
T PF13500_consen 121 NADIAKALGAPVILVASGRLGTI 143 (199)
T ss_dssp HHHHHHHHT-EEEEEEESSTTHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCH
Confidence 44556666666666665554433
No 404
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.50 E-value=3.4e+02 Score=21.12 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+..+.+.+++.|+.+.......++ ...+++.....++|-||+...... .......+++.++||+++-
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~-------~~~~~~~~~~~~ipvV~i~ 86 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDER-------DPELVDALASLDLPIVLLD 86 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-------cHHHHHHHHhCCCCEEEEe
Confidence 4444455555666665543332233 334445555567777776432211 0111223445567777774
No 405
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=24.45 E-value=2.6e+02 Score=21.16 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCC
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGD 136 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~ 136 (197)
....++++.+.+.+.++. ..+..||
T Consensus 26 ~~~~~~~~~~~~~~~~~d--~i~~~GD 50 (223)
T cd00840 26 QFEAFEEIVELAIEEKVD--FVLIAGD 50 (223)
T ss_pred HHHHHHHHHHHHHhcCCC--EEEECCc
Confidence 344555555555554433 3444554
No 406
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.42 E-value=1.8e+02 Score=24.05 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=51.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|=+.+.....+..-++-|-.+.+.+ +.. .++|+.-|... .
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Y------------g~~-~I~h~tyPdnf--------------------------~ 44 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKY------------GDV-MIKHVTYPDNF--------------------------M 44 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHH------------HHH-EEEEEE--TTG--------------------------G
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHh------------Ccc-eEEEEeCCCcc--------------------------c
Confidence 56677777777777788888888884 333 77777666431 1
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+.+..+.++..++.+..+++-.....-.-.-+-.+-.++.+.|++.+.....
T Consensus 45 ~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 45 SEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp GCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred chHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 22444566677777775554444332222234455667788999999987543
No 407
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.42 E-value=3.4e+02 Score=21.06 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+...+.+.|+.+.......++. ..+++.....++|-||+........ .... ..+...++||+++-.
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-----~~~l-~~~~~~~iPvV~~~~ 89 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY-----IPGL-RKAKQAGIPVVITNS 89 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc-----HHHH-HHHHHCCCcEEEeCC
Confidence 34444445555677766543333433 3344545566899998864322111 1122 334677899988843
No 408
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=24.28 E-value=3.4e+02 Score=20.94 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHHHhhcCCceEEEEecC-----ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 118 LQICKDKNVKAETLVLTG-----DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g-----~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+.+++.|+++...-... ...+++.+..++.++|++|+....
T Consensus 43 ~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 43 LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcc
Confidence 466777889876521111 124678888899999999997654
No 409
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.24 E-value=3.7e+02 Score=21.43 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccH---HHHHHhhCCCCEEE
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSV---SDYCAHHVQCPIII 185 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~---~~~il~~~~~pVlv 185 (197)
...++.+.+++.|+..-..+....+.+.|...+....--+.+|+..+-.+....+..++ ...+-...++||.+
T Consensus 117 e~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 117 EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 45677788888899888877767777777777763222244555444333322222222 33343444677766
No 410
>PTZ00300 pyruvate kinase; Provisional
Probab=24.19 E-value=2.2e+02 Score=25.40 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
.+...++.|...++++||+-++. |.++..+.+.-| |||+.+-+.
T Consensus 336 ia~sa~~~a~~l~a~aIiv~T~s---------G~tA~~vs~~RP~~pIia~t~~ 380 (454)
T PTZ00300 336 VCSSAVNSVYETKAKALVVLSNT---------GRSARLVAKYRPNCPIVCVTTR 380 (454)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 45566778889999999987654 566777777655 999988654
No 411
>PRK07369 dihydroorotase; Provisional
Probab=24.19 E-value=1.6e+02 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 38 ESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 38 ~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
....++..++.+|+. .+++++++|+...
T Consensus 211 aE~~av~r~~~la~~------------~~~~~hi~HvSs~ 238 (418)
T PRK07369 211 AETTALAALLELVAA------------IGTPVHLMRISTA 238 (418)
T ss_pred HHHHHHHHHHHHHHH------------HCCcEEEEeCCCH
Confidence 345678889999999 8999999999775
No 412
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=24.18 E-value=2.1e+02 Score=24.05 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 138 KDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+.+.+.+++.++|.|| +|.... ..++..+....+.|++.||-..
T Consensus 66 v~~~~~~~~~~~~d~IIaiGGGs~--------iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 66 TEAAVAAAREAGADGIVAIGGGST--------IDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHH--------HHHHHHHHHHhcCCEEEEcCCc
Confidence 45666667778999888 553221 2334444444588999998643
No 413
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=23.99 E-value=3.2e+02 Score=20.56 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhcCCceE---EEEecC--ChHHHHHHHHHHcCCCEEEE-ec--CCCCcccccccccHHHHHHh---
Q 044973 109 NSAALLSRALQICKDKNVKAE---TLVLTG--DPKDMICQAAEQMHMDLLVV-GS--RGLGKIKRALLGSVSDYCAH--- 177 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~---~~v~~g--~~~~~I~~~a~~~~~dliVi-G~--~~~~~~~~~~~gs~~~~il~--- 177 (197)
-.+..++-+.+.+++.|..++ .....| +..-.+.+.++..++|.||. |. ++.+..-....+.++..|.+
T Consensus 26 I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl 105 (152)
T COG0054 26 ITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSL 105 (152)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHH
Confidence 344566667777777776655 444556 45666778888888888764 44 44444444555666665554
Q ss_pred hCCCCEEE
Q 044973 178 HVQCPIII 185 (197)
Q Consensus 178 ~~~~pVlv 185 (197)
+...||..
T Consensus 106 ~~~~PV~~ 113 (152)
T COG0054 106 ETGVPVTF 113 (152)
T ss_pred hhCCCeEe
Confidence 44688865
No 414
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=23.97 E-value=2.2e+02 Score=18.63 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC--cccccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLG--KIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~--~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+.|.+..++..++.|.+|..+.- .....+.-.+.+.+-++.++||.++...
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa 93 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDER 93 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCC
Confidence 3455666666667888888865531 1111111344455555678999988764
No 415
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.81 E-value=3.5e+02 Score=20.97 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|+.+.......++ ...+++.+...++|-+|+........ ....+ .+...++||+.+-.
T Consensus 16 ~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~~ipvV~~~~ 88 (267)
T cd06322 16 ELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGI-----RAAIA-KAKKAGIPVITVDI 88 (267)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhh-----HHHHH-HHHHCCCCEEEEcc
Confidence 34555556666778777654333343 33455555667999999964322111 11223 34567899999854
No 416
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.79 E-value=1.3e+02 Score=24.77 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCC------CCcccccc-ccc-------HHHHHHh
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRG------LGKIKRAL-LGS-------VSDYCAH 177 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~------~~~~~~~~-~gs-------~~~~il~ 177 (197)
+.++++++..+.. +..+-.|--.-...++++.-++|||++-+++ ++.+..++ +|+ .+++||-
T Consensus 2 eil~~l~~~i~~~----~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp 77 (268)
T PF09370_consen 2 EILDRLRAQIKAG----KPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILP 77 (268)
T ss_dssp HHHHHHHHHHHTT------EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHhCC----CceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhh
Confidence 4566666666653 2222222222344577888899999997754 22222221 222 2455666
Q ss_pred hCC-CCEEE
Q 044973 178 HVQ-CPIII 185 (197)
Q Consensus 178 ~~~-~pVlv 185 (197)
..+ .||+.
T Consensus 78 ~v~~tPVia 86 (268)
T PF09370_consen 78 VVKDTPVIA 86 (268)
T ss_dssp G-SSS-EEE
T ss_pred hccCCCEEE
Confidence 665 78774
No 417
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=23.74 E-value=3.8e+02 Score=21.41 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGK 162 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~ 162 (197)
...+.+.+.|..-.+....|+..+.++..-+ ++|++++-++.+..
T Consensus 84 ~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~--~iDF~vVDc~~~d~ 128 (218)
T PF07279_consen 84 EYKKALGEAGLSDVVEFVVGEAPEEVMPGLK--GIDFVVVDCKREDF 128 (218)
T ss_pred HHHHHHhhccccccceEEecCCHHHHHhhcc--CCCEEEEeCCchhH
Confidence 4445555555542222334765555554434 78888888775443
No 418
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.74 E-value=2.1e+02 Score=23.18 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCCC
Q 044973 141 ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~ 192 (197)
=....++.++|.||.=.+|..+.... -...+...+||++|+++..+
T Consensus 186 n~al~~~~~i~~lVtK~SG~~g~~eK------i~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 186 NRALFRQYGIDVLVTKESGGSGFDEK------IEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred HHHHHHHcCCCEEEEcCCCchhhHHH------HHHHHHcCCeEEEEeCCCCC
Confidence 34567888999999876665422222 23567889999999776554
No 419
>PRK09206 pyruvate kinase; Provisional
Probab=23.63 E-value=2.1e+02 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~~ 190 (197)
.+...+..|...++.+||+-+.. |+++..+.+.-| |||+.+-+.+
T Consensus 358 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~is~~RP~~pIia~t~~~ 403 (470)
T PRK09206 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARSVRKYFPDATILALTTNE 403 (470)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 55666677888999999997654 677777876655 9999987643
No 420
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=23.56 E-value=3.5e+02 Score=20.84 Aligned_cols=68 Identities=6% Similarity=-0.009 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+..+.+.+++.|+.+.......++.. .+++.....++|.||+....... .. .-..+.+.+.|++++-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~------~~-~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT------SP-ALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc------hH-HHHHHhhCCCCEEEEe
Confidence 444455555667777766544334332 44444555688988886432111 11 1234566788887773
No 421
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.49 E-value=3.6e+02 Score=20.96 Aligned_cols=67 Identities=7% Similarity=-0.000 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+.......+. ...+.+.....++|-||+...... ...+ .+...++|++++-.
T Consensus 20 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~~~~-~l~~~~ipvV~~~~ 88 (268)
T cd06277 20 IYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--------EYIK-EIKELGIPFVLVDH 88 (268)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--------HHHH-HHhhcCCCEEEEcc
Confidence 4444555566667766554433332 223455555668888888543211 1122 34566788888854
No 422
>PRK06354 pyruvate kinase; Provisional
Probab=23.49 E-value=2.1e+02 Score=26.52 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~~ 190 (197)
.+...+..|+..++++||+-++. |+++..+.+.-| |||+.+-+.+
T Consensus 365 ia~aa~~~a~~~~a~~Iv~~T~s---------G~ta~~vsk~Rp~~pI~a~t~~~ 410 (590)
T PRK06354 365 ISQAVSHIALQLDAAAIVTLTKS---------GATARNVSKYRPKTPILAVTPNE 410 (590)
T ss_pred HHHHHHHHHhhcCCCEEEEECCC---------hHHHHHHHhhCCCCCEEEECCCH
Confidence 44556677889999999997654 667777777655 9999987643
No 423
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.39 E-value=3.2e+02 Score=20.45 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=26.8
Q ss_pred eEEEEecCChHHHHHHH--H-HHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 128 AETLVLTGDPKDMICQA--A-EQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 128 ~~~~v~~g~~~~~I~~~--a-~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+..++..+.+-.+ . ...++|.||-. |.+++.|-++.+.||+-++..
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~s 62 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVSIPVVEIPIS 62 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE---
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECCC
Confidence 44445566544444333 2 34688888753 667777777888999988764
No 424
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=23.37 E-value=3.4e+02 Score=20.63 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHc--CCCEEEEecC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQM--HMDLLVVGSR 158 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~--~~dliViG~~ 158 (197)
.++++.+.+.+.++-+-..+...+.++.|....+.. ++|.+|+-.+
T Consensus 47 ~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 47 ALEECEAAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFES 94 (164)
T ss_pred HHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEcC
Confidence 445566666666666666555556666666665554 6776666544
No 425
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=23.04 E-value=1.2e+02 Score=22.05 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+.+.++++++++|-|++.-..... .. +-.. -..+++.+|.|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~-~~--i~~i-i~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE-EQ--IKRI-IEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H-HH--HHHH-HHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH-HH--HHHH-HHHHHhCCCEEEEeC
Confidence 5789999999999999998655331 11 1122 234566789998887
No 426
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=23.03 E-value=3.8e+02 Score=21.11 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
....+.+.+++.++|.|++..........-..-.....+....++||+..=
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeC
Confidence 345666777888999777754433221111223556778888899988764
No 427
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.03 E-value=2.4e+02 Score=18.90 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
...+.+.+++.|++++..- .+.. ++-.++ .++|+|+.+..
T Consensus 20 ~~ki~~~l~~~gi~~~v~~--~~~~-e~~~~~--~~~D~iv~t~~ 59 (94)
T PRK10310 20 AEEIKELCQSHNIPVELIQ--CRVN-EIETYM--DGVHLICTTAR 59 (94)
T ss_pred HHHHHHHHHHCCCeEEEEE--ecHH-HHhhhc--CCCCEEEECCc
Confidence 3556677788899876433 3332 344444 37999988864
No 428
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=22.89 E-value=5.5e+02 Score=22.96 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=23.7
Q ss_pred eEEEEecCChHHHHHHH--HHHcCCCEEEEec-CCCCccccccccc
Q 044973 128 AETLVLTGDPKDMICQA--AEQMHMDLLVVGS-RGLGKIKRALLGS 170 (197)
Q Consensus 128 ~~~~v~~g~~~~~I~~~--a~~~~~dliViG~-~~~~~~~~~~~gs 170 (197)
..+++..|+..+.|.++ |-..++|.|.+=. .+.|.+.-...|.
T Consensus 149 iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~Ga 194 (509)
T PF09043_consen 149 IYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGA 194 (509)
T ss_dssp EEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S-
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCC
Confidence 44666679999999854 7788999987744 3444444334443
No 429
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=22.82 E-value=3.1e+02 Score=20.09 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhcCCceE---EEEecC--ChHHHHHHHHHHcCCCEEEE-ec--CCCCcccccccccHHHHHHhh-
Q 044973 108 ENSAALLSRALQICKDKNVKAE---TLVLTG--DPKDMICQAAEQMHMDLLVV-GS--RGLGKIKRALLGSVSDYCAHH- 178 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~---~~v~~g--~~~~~I~~~a~~~~~dliVi-G~--~~~~~~~~~~~gs~~~~il~~- 178 (197)
+-.+..++.+.+.+++.|+..+ .....| ...-.+..+++..++|-+|. |. ++.+..-......+++.|.+-
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~s 92 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLA 92 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHH
Confidence 4456677888888888887643 444456 45566667777777887664 55 455544444555555555543
Q ss_pred --CCCCEEE
Q 044973 179 --VQCPIII 185 (197)
Q Consensus 179 --~~~pVlv 185 (197)
...||..
T Consensus 93 l~~~~PV~~ 101 (138)
T TIGR00114 93 LDYDKPVIF 101 (138)
T ss_pred hhhCCCEEE
Confidence 3577764
No 430
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=22.82 E-value=7.3e+02 Score=25.10 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHHcCCCEEEEecCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+++..+.+.++++..+|+++..-+.- .....|++-..+..+|+ |+|+|.
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDI-vIGTHr 706 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDI-VIGTHR 706 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccE-EEechH
Confidence 355678889999999888888666553 46788888888888986 568876
No 431
>PRK05826 pyruvate kinase; Provisional
Probab=22.81 E-value=2.3e+02 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHcC-CCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 136 DPKDMICQAAEQMH-MDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~-~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
..+...+..|...+ +++||+-++. |.++..+.+.-| |||+.+-+.
T Consensus 359 ~ia~aa~~~a~~l~~a~~Ivv~T~s---------G~ta~~isk~RP~~pI~~~t~~ 405 (465)
T PRK05826 359 AIAMSAMYAANHLKGVKAIVALTES---------GRTARLISRFRPGAPIFAVTRD 405 (465)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 35566678888888 9988886544 566666766654 999998664
No 432
>PTZ00066 pyruvate kinase; Provisional
Probab=22.77 E-value=2.4e+02 Score=25.64 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
..+...++.|+..++.+||+-+.. |.++..+.+.-| |||+.+-+.
T Consensus 398 ~ia~aa~~~A~~l~a~aIv~~T~S---------G~TAr~iSk~RP~~pIia~t~~ 443 (513)
T PTZ00066 398 AVARSAVETAEDINAKLIIALTET---------GNTARLISKYRPSCTILALSAS 443 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 366777888999999999997654 567777777655 999998764
No 433
>PLN02765 pyruvate kinase
Probab=22.73 E-value=2.2e+02 Score=25.91 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEEC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVK 187 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~ 187 (197)
.+...++.|+..++.+||+-+.. |.++..+.+.-| |||+.+-
T Consensus 396 ia~sav~~A~~l~a~aIvv~T~s---------G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 396 IASSAVRAAIKVKASVIIVFTSS---------GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred HHHHHHHHHhhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 55666778889999999997654 667777777765 9999986
No 434
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.69 E-value=3.7e+02 Score=20.90 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhc---CCceEEEEecC--Ch--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 113 LLSRALQICKDK---NVKAETLVLTG--DP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 113 ~l~~~~~~~~~~---gi~~~~~v~~g--~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
.+..+.+.+++. |..++..+... +. ....++.+...++|.||+......... ... ..+...++||++
T Consensus 17 ~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~-----~~l-~~~~~~~iPvv~ 90 (272)
T cd06300 17 MLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALN-----PVI-EEACEAGIPVVS 90 (272)
T ss_pred HHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HHH-HHHHHCCCeEEE
Confidence 344444555555 77555555432 32 234444455569999999754322111 122 245567899998
Q ss_pred ECC
Q 044973 186 VKP 188 (197)
Q Consensus 186 v~~ 188 (197)
+-.
T Consensus 91 ~~~ 93 (272)
T cd06300 91 FDG 93 (272)
T ss_pred Eec
Confidence 854
No 435
>PRK05406 LamB/YcsF family protein; Provisional
Probab=22.69 E-value=4.3e+02 Score=21.56 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecC----------ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHH
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTG----------DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSD 173 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g----------~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~ 173 (197)
++........+..+...++..|.++...=..| ..++.|++.+...+.+|++++..+ +...
T Consensus 82 ~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~----------s~~~ 151 (246)
T PRK05406 82 EELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG----------SELI 151 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC----------hHHH
Confidence 34444445555666777888888877644442 367889999998899999988443 3345
Q ss_pred HHHhhCCCCEE
Q 044973 174 YCAHHVQCPII 184 (197)
Q Consensus 174 ~il~~~~~pVl 184 (197)
++.+....|++
T Consensus 152 ~~A~~~Gl~~~ 162 (246)
T PRK05406 152 RAAEEAGLRTA 162 (246)
T ss_pred HHHHHcCCcEE
Confidence 55556666554
No 436
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.61 E-value=2.1e+02 Score=20.14 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecC-C----hHHHHHHHHHHcCCCEEEEec
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTG-D----PKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g-~----~~~~I~~~a~~~~~dliViG~ 157 (197)
...+.......|++.|+.++...... . ..+.|-++-+..+++-|++=.
T Consensus 43 S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~ 95 (117)
T PF00763_consen 43 SISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQL 95 (117)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEES
T ss_pred HHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcC
Confidence 34455566677788899888777643 2 334444445555667777654
No 437
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=4.7e+02 Score=22.02 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=36.8
Q ss_pred eEEEEec--CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 128 AETLVLT--GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 128 ~~~~v~~--g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
-++.+.. +....+++..|.+.+-++-|+-..++-.+ -|...-+-|++..+|+.+|+..
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~----eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRG----EGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcc----hHHHHHHHHHHcCCceEEEech
Confidence 3344444 45777778777776654444444333222 2777788889999999998753
No 438
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=22.58 E-value=3.5e+02 Score=20.55 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
....+...+++.|+.+.......++ ....++.+...++|.||+.....+... -..+...+.||+.+-..
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~--------~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL--------LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--------HHHHHHcCCCEEEeccc
Confidence 3334444455567766654433343 233444455568888888654432110 23356778888887543
No 439
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.45 E-value=1.6e+02 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCc
Q 044973 135 GDPKDMICQAAEQMHMDLLVVGSRGLGK 162 (197)
Q Consensus 135 g~~~~~I~~~a~~~~~dliViG~~~~~~ 162 (197)
|+-.+.+++.+++.++.+|.+-+.+...
T Consensus 102 GdDi~~v~~~~~~~~~~vi~v~t~gf~g 129 (427)
T cd01971 102 GDDVGAVVSEFQEGGAPIVYLETGGFKG 129 (427)
T ss_pred hcCHHHHHHHhhhcCCCEEEEECCCcCc
Confidence 5556666665677788888888776543
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=22.45 E-value=4.7e+02 Score=21.96 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHH---HHHHHHcCCCEEEEecCCCCccccc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMI---CQAAEQMHMDLLVVGSRGLGKIKRA 166 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I---~~~a~~~~~dliViG~~~~~~~~~~ 166 (197)
++..+....++.+.......++...+ +..+...++|+|++-+.++......
T Consensus 160 ql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~ 213 (318)
T PRK10416 160 QLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTN 213 (318)
T ss_pred HHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHH
Confidence 33444555566665443333554322 3455667899999999887654443
No 441
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=22.44 E-value=3.9e+02 Score=21.49 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=30.9
Q ss_pred EecCC---hHHHHHHHHHHcCCCE-EEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 132 VLTGD---PKDMICQAAEQMHMDL-LVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 132 v~~g~---~~~~I~~~a~~~~~dl-iViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
|..|+ +.+.+.+.++ .+|+ ||||++..-..-. +.. ...+....+|++|-+.+
T Consensus 154 V~FGE~~~~~~~~~~~~~--~~DlllviGTSl~V~pa~----~l~-~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 154 VWFGEMPLYMDEIESVMS--KTDLFVAVGTSGNVYPAA----GFV-GRAQFYGATTLELNLEE 209 (242)
T ss_pred EEcCCCCCcHHHHHHHHH--hCCEEEEEccCCccccHH----HHH-HHHHHcCCeEEEECCCC
Confidence 34565 4566666666 6887 6778775432211 222 23456688999997654
No 442
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=22.44 E-value=3.7e+02 Score=20.80 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+......+++. ..+++.....++|-||+....... ..-.-+...+.||+++-.
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~--------~~~~~~~~~~ipvV~~~~ 86 (264)
T cd06274 17 IAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPD--------DPYYLCQKAGLPVVALDR 86 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCch--------HHHHHHHhcCCCEEEecC
Confidence 44445555666777766654444443 355666667789988876433211 112234566789888843
No 443
>PLN02762 pyruvate kinase complex alpha subunit
Probab=22.43 E-value=2.4e+02 Score=25.65 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~ 189 (197)
.+...++.|+..++.+||+-++. |+++..+.+.-| |||+.+-+.
T Consensus 397 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~iSk~RP~~pIia~t~~ 441 (509)
T PLN02762 397 ICNSAAKMANNLGVDAIFVYTKH---------GHMASLLSRNRPDCPIFAFTDT 441 (509)
T ss_pred HHHHHHHHHhhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 55666778889999999997654 566676776655 999888654
No 444
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=22.39 E-value=3.7e+02 Score=20.81 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCccccccc---ccHHHHHHhhCCCCEEEEC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALL---GSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~---gs~~~~il~~~~~pVlvv~ 187 (197)
++.+.+++.+ .....+...++.+. ..+.+.++|.+.+..++......... -.....+......||+..-
T Consensus 113 ~~i~~~~~~g-~~~iiv~v~t~~ea--~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~G 184 (219)
T cd04729 113 ELIKRIHEEY-NCLLMADISTLEEA--LNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEG 184 (219)
T ss_pred HHHHHHHHHh-CCeEEEECCCHHHH--HHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeC
Confidence 4444445545 33333323344333 45556699998775443322111011 1455666666678888764
No 445
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=22.30 E-value=5.1e+02 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
-...++++|.+.++|.|+.|..-+
T Consensus 104 KF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 104 KFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred HHHHHHHHHHHcCCCeEEEeeeEe
Confidence 357888999999999999997543
No 446
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=22.26 E-value=5.8e+02 Score=22.95 Aligned_cols=124 Identities=13% Similarity=0.056 Sum_probs=62.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQE 107 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
+|+||+.+. ....+.++.-.+++. -+.++....+++|.+.++.. ....
T Consensus 250 ~iIvPl~~r-~~~~~~~Fl~~~~~~-------~l~~~~~~~L~vV~~~~~~~------------------------~~~~ 297 (499)
T PF05679_consen 250 HIIVPLSGR-EADWFRRFLENFEKV-------CLETDDNVFLTVVLFYDPSD------------------------SDSI 297 (499)
T ss_pred EEEEEecCc-cHHHHHHHHHHHHHH-------hcccCCceEEEEEEecCccc------------------------chhH
Confidence 799999887 234555555555444 12222455666665555321 0111
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec-CC--hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC--CC
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT-GD--PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ--CP 182 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~--~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~--~p 182 (197)
...+..++.+.... .+.++.+.-.. |. -..++-..++..+.|-|++-+.-.-.+..-++...-...+..-. .|
T Consensus 298 ~~ik~~l~~l~~k~--~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~P 375 (499)
T PF05679_consen 298 SQIKELLEELERKY--PFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFP 375 (499)
T ss_pred HHHHHHHHHHHHhC--CccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEe
Confidence 11444555554444 34566666665 53 34445555666677777776665544444344433333333322 56
Q ss_pred EEE
Q 044973 183 III 185 (197)
Q Consensus 183 Vlv 185 (197)
|..
T Consensus 376 I~F 378 (499)
T PF05679_consen 376 IVF 378 (499)
T ss_pred eec
Confidence 555
No 447
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=22.13 E-value=5.2e+02 Score=25.04 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=54.4
Q ss_pred CEEEEEe-CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 27 MKVMVAL-DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 27 ~~ILv~~-d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++||.- .+|.-...|+=.++.-.... | --.....++++||.+-
T Consensus 38 ~nvLiiAPTGsGKTeAAfLpil~~l~~~------~-~~~~~~~i~~lYIsPL---------------------------- 82 (814)
T COG1201 38 ENVLIIAPTGSGKTEAAFLPVINELLSL------G-KGKLEDGIYALYISPL---------------------------- 82 (814)
T ss_pred CceEEEcCCCCChHHHHHHHHHHHHHhc------c-CCCCCCceEEEEeCcH----------------------------
Confidence 4555533 34555555544444433331 0 0003456999999764
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEe
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVG 156 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG 156 (197)
+....+.+.++....+..|+++ .+++||..+.=-+.-....+|+++.-
T Consensus 83 -kALn~Di~~rL~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTT 130 (814)
T COG1201 83 -KALNNDIRRRLEEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITT 130 (814)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeC
Confidence 3444555666666677778888 67889877666666556678877763
No 448
>PRK00766 hypothetical protein; Provisional
Probab=22.13 E-value=2.6e+02 Score=21.86 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCceEEEEecC-ChHHHHHHHHHH----cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 125 NVKAETLVLTG-DPKDMICQAAEQ----MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 125 gi~~~~~v~~g-~~~~~I~~~a~~----~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
|+-+......| |..+.|++..+. .+..+|++..-..+++. + -..+.|-++...||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN--v--vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN--V--VDIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE--E--ecHHHHHHHHCCCEEEE
Confidence 45555555666 789999999886 23446666443333221 1 23577888999999999
No 449
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.09 E-value=3.5e+02 Score=22.32 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCc------eEEEEecCCh--H----HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH
Q 044973 107 EENSAALLSRALQICKDKNVK------AETLVLTGDP--K----DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~------~~~~v~~g~~--~----~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~ 174 (197)
.+.++++++++.+.+.+.+.- +-+.+ -++| . +.+.......++|.|+ |....+ + ..+..
T Consensus 75 ~~~~~~~~~~l~~~l~~~~rilpgg~~~~s~l-l~~P~~l~~ig~~la~~~~~~~iD~Vv-gvetkG----I---pLA~a 145 (268)
T TIGR01743 75 QAEAEEFVEELCQSLSEPERILPGGYLYLTDI-LGKPSILSKIGKILASVFAEREIDAVM-TVATKG----I---PLAYA 145 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCeEEechh-hcCHHHHHHHHHHHHHHhcCCCCCEEE-EEccch----H---HHHHH
Confidence 355667777777777776432 11212 2343 2 3333333344788654 433322 1 34555
Q ss_pred HHhhCCCCEEEECCCCCC
Q 044973 175 CAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 175 il~~~~~pVlvv~~~~~~ 192 (197)
+......|++++++..+.
T Consensus 146 vA~~L~vp~vivRK~~K~ 163 (268)
T TIGR01743 146 VASVLNVPLVIVRKDSKV 163 (268)
T ss_pred HHHHHCCCEEEEEECCCC
Confidence 667789999999987653
No 450
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=22.03 E-value=2.3e+02 Score=25.52 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 190 (197)
.....++.|++.+++.||+-+.. |.++..+.+.- +|||+.+-+.+
T Consensus 363 ia~sAv~~A~~l~akaIVv~T~S---------G~TA~~lS~~RP~~pIiavT~~~ 408 (480)
T cd00288 363 VAMSAVRAAFELGAKAIVVLTTS---------GRTARLVSKYRPNAPIIAVTRNE 408 (480)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCCH
Confidence 45566677888899999987655 55666666554 49999997654
No 451
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=21.98 E-value=1.1e+02 Score=26.34 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHcCCC---EEEEecCCCCc----ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 135 GDPKDMICQAAEQMHMD---LLVVGSRGLGK----IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 135 g~~~~~I~~~a~~~~~d---liViG~~~~~~----~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
||..+.+...+...-+. ++++|.++... ..+...|.++..+|.-..+|..+++..
T Consensus 63 Gn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~ 124 (361)
T TIGR03297 63 GNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTD 124 (361)
T ss_pred hhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCC
Confidence 57777777774322333 47778887543 335668999999999999999999653
No 452
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.97 E-value=2.1e+02 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHcCCCEEEEecCCCC-cccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 142 CQAAEQMHMDLLVVGSRGLG-KIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 142 ~~~a~~~~~dliViG~~~~~-~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
....++.++|.||.=.++.. .....+ ...++..+||++|.++..
T Consensus 190 ~al~~~~~i~~lVtK~SG~~Gg~~eKi------~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGEQGGELEKV------KAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHHHcCCCEEEEcCCCCccchHHHH------HHHHHcCCcEEEEeCCCC
Confidence 46677889999998666553 222221 466788999999976653
No 453
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=21.81 E-value=4.2e+02 Score=21.18 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+.+++..+..++|+.++|.|....... ....+++++++|+|-
T Consensus 61 ~~~~~~l~~l~~d~~~~GNHefd~g~~-----~l~~~~~~~~~~~L~ 102 (257)
T cd07406 61 KQMVPVLNALGVDLACFGNHEFDFGED-----QLQKRLGESKFPWLS 102 (257)
T ss_pred ccHHHHHHhcCCcEEeecccccccCHH-----HHHHHHhhCCCCEEE
Confidence 568888889999999999998643222 234567788888877
No 454
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.73 E-value=3.9e+02 Score=20.81 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCceEEEEec--CChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLT--GDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~--g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+...... +++. ...++.....++|-||+........ .+..+ .+...++||+.+-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~~~ 90 (275)
T cd06320 17 LKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNL-----VPAVE-RAKKKGIPVVNVND 90 (275)
T ss_pred HHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHh-----HHHHH-HHHHCCCeEEEECC
Confidence 4445556666677776654332 2332 3344455556899888864322111 12222 34567899998854
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 91 ~ 91 (275)
T cd06320 91 K 91 (275)
T ss_pred C
Confidence 3
No 455
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.69 E-value=4e+02 Score=20.93 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+.......++. ...++.....++|-||+........ .....+ +...+.||+++-.
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~-----~~~i~~-~~~~~iPvV~~~~ 88 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTL-----TEAVQK-AIARGIPVIDMGT 88 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHh-----HHHHHH-HHHCCCcEEEeCC
Confidence 44455556666787777654444433 3445555567899999954321111 112222 3456899999854
No 456
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.56 E-value=3.4e+02 Score=20.77 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHH---HHHhhCCCCEEEE
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSD---YCAHHVQCPIIIV 186 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~---~il~~~~~pVlvv 186 (197)
.++.-+.+...+++.|+.++..-... +.. ..-.++|-||+|++-+...-+..+++... ..|...|.-++.|
T Consensus 14 T~kIA~~iA~~L~e~g~qvdi~dl~~-----~~~-~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~v 87 (175)
T COG4635 14 TRKIAEYIASHLRESGIQVDIQDLHA-----VEE-PALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFSV 87 (175)
T ss_pred HHHHHHHHHHHhhhcCCeeeeeehhh-----hhc-cChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 34556667778888888888754321 221 12347999999997654333323344332 3566667777777
Q ss_pred CC
Q 044973 187 KP 188 (197)
Q Consensus 187 ~~ 188 (197)
-.
T Consensus 88 nl 89 (175)
T COG4635 88 NL 89 (175)
T ss_pred eh
Confidence 54
No 457
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.56 E-value=4.6e+02 Score=21.55 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhc-CCceEEEEec-C--ChHHHHHHHHHHc--CCCEEEEe
Q 044973 112 ALLSRALQICKDK-NVKAETLVLT-G--DPKDMICQAAEQM--HMDLLVVG 156 (197)
Q Consensus 112 ~~l~~~~~~~~~~-gi~~~~~v~~-g--~~~~~I~~~a~~~--~~dliViG 156 (197)
+.|+++.+.+++. ++.++++... . +-...|.+..++. .+|++|=.
T Consensus 41 ~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 41 DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 3455555555543 5666655433 2 2334444444444 78888864
No 458
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=21.55 E-value=4.9e+02 Score=21.81 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCceEEEEecC--C----hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 115 SRALQICKDKNVKAETLVLTG--D----PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g--~----~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
+++...+++.|+.+......+ + ..+.+.+.+++ ++|+|| +|.-. .+.++..+.....+|++.||
T Consensus 41 ~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGs--------v~D~aK~iA~~~gip~I~VP 111 (332)
T cd08549 41 KEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGT--------IIDLVKFVSFKVGKPFISVP 111 (332)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcH--------HHHHHHHHHHHcCCCEEEeC
Confidence 455566666676555322111 1 23456666666 888877 44221 13444445555678999999
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 112 TT 113 (332)
T cd08549 112 TA 113 (332)
T ss_pred CC
Confidence 65
No 459
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.40 E-value=5.4e+02 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEec
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~ 157 (197)
+..+.+++.++.+...+ ......++.+.+.+.++|+|++-.
T Consensus 122 ~iv~~~~~~~V~v~vr~-~~~~~~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSL-SPQRAQELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred HHHHHHHhCeEEEEEec-CCcCHHHHHHHHHHCCCCEEEEec
Confidence 33444444455554433 123467888889999999999943
No 460
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=21.32 E-value=4e+02 Score=20.70 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHHHHhhcCCceEEEE--ec---CChHHHHHHHHHHcCCCEEEEecCC
Q 044973 117 ALQICKDKNVKAETLV--LT---GDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v--~~---g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+...+++.|+++...- .. ......+.+..+..++|++|+....
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 90 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM 90 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHhh
Confidence 4566788899875421 11 1124577888888899999986543
No 461
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.27 E-value=2.3e+02 Score=17.99 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEE-EEecC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLL-VVGSR 158 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dli-ViG~~ 158 (197)
.+...++..|+.++.... +.....-.++|+..++.++ ++|..
T Consensus 19 ~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 19 EVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcc
Confidence 344555667888887554 4566777778888888854 45543
No 462
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.27 E-value=2e+02 Score=24.94 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCceEEEE-ecCCh----HHHHHHHHHHcCCCEEEE
Q 044973 113 LLSRALQICKDKNVKAETLV-LTGDP----KDMICQAAEQMHMDLLVV 155 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v-~~g~~----~~~I~~~a~~~~~dliVi 155 (197)
.++++...+++.|+.+...- ..++| .+...+.+++.++|.||-
T Consensus 65 ~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 65 MTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 45566777777788765431 23333 567777888999998875
No 463
>PRK08576 hypothetical protein; Provisional
Probab=21.16 E-value=5.9e+02 Score=22.63 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=17.3
Q ss_pred EEEEEeCCChhhHHHHHHHHH
Q 044973 28 KVMVALDESGESFYALKWALD 48 (197)
Q Consensus 28 ~ILv~~d~s~~s~~al~~a~~ 48 (197)
+|+|++.+..+|..++..+..
T Consensus 236 rVvVafSGGKDStvLL~La~k 256 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKK 256 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHH
Confidence 899999999999888865544
No 464
>PRK05370 argininosuccinate synthase; Validated
Probab=21.08 E-value=6e+02 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCccc
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIK 164 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~ 164 (197)
.+..+++.|++.+++.|.-|+.+.++-.
T Consensus 110 ia~~lv~~A~~~ga~aIAHG~TGKGNDQ 137 (447)
T PRK05370 110 TGTMLVAAMKEDGVNIWGDGSTYKGNDI 137 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCCCCCch
Confidence 5789999999999999999998765443
No 465
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=21.01 E-value=1.5e+02 Score=19.73 Aligned_cols=44 Identities=9% Similarity=-0.058 Sum_probs=25.5
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
+.+.+++.|+.+.+......-.+..+..-.-..+|+||+.....
T Consensus 6 L~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~ 49 (88)
T PRK10474 6 LESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIG 49 (88)
T ss_pred HHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC
Confidence 44556677888777765543222222222223799999986543
No 466
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.99 E-value=1.9e+02 Score=26.33 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=60.3
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQS 101 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
+....+.|.|..-.. |-..|.|++-+... +++|.-..|.++-+++.
T Consensus 179 ~~~r~rDIcV~ApTG--SGKTLaY~iPIVQ~--------L~~R~v~~LRavVivPt------------------------ 224 (620)
T KOG0350|consen 179 PPSRPRDICVNAPTG--SGKTLAYVIPIVQL--------LSSRPVKRLRAVVIVPT------------------------ 224 (620)
T ss_pred CCCCCCceEEecCCC--CCceeeehhHHHHH--------HccCCccceEEEEEeeH------------------------
Confidence 333356777654322 33455566665555 44556667888888775
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcC---CCEEEE
Q 044973 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMH---MDLLVV 155 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~---~dliVi 155 (197)
.+.+.+....+..++...|+.|-......+..++.-+.+...+ +|++|-
T Consensus 225 -----r~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVa 276 (620)
T KOG0350|consen 225 -----RELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVA 276 (620)
T ss_pred -----HHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEc
Confidence 2444556666777777778876665555578888888888644 677765
No 467
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=20.90 E-value=87 Score=28.65 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEecC--CCCcccccc----cccHHHHHHhhCCCCEEEEC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSR--GLGKIKRAL----LGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~--~~~~~~~~~----~gs~~~~il~~~~~pVlvv~ 187 (197)
+..++|+..|++.++|+|++|.. +.....+.. ++..-.+++..-||-+=++.
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lS 96 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILS 96 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEec
Confidence 35799999999999999999973 223333322 23333344444456555553
No 468
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=4.2e+02 Score=20.83 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=52.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
+++.|-+.++.....||--+.+--.. +.+-.+++|+.....
T Consensus 7 ~rvavliSGtGsNlqaLid~~r~~~l-------------~~~a~VvlviSnk~~-------------------------- 47 (206)
T KOG3076|consen 7 ARVAVLISGTGSNLQALIDATRDGSL-------------GPNADVVLVISNKKG-------------------------- 47 (206)
T ss_pred eeEEEEEecCchhHHHHHHhhcCCCc-------------CCCceEEEEEecccc--------------------------
Confidence 58889999998888888766555333 234444555554210
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEe---cC--ChHHHHHHHHHHcCCCEEEEec
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVL---TG--DPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~---~g--~~~~~I~~~a~~~~~dliViG~ 157 (197)
..-.+.+.+.|+++...-- .+ ....+|.+...+.+.|+|+++.
T Consensus 48 --------~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~l~e~~~d~v~lAG 95 (206)
T KOG3076|consen 48 --------VYGLERAADAGIPTLVIPHKRFASREKYDNELAEVLLELGTDLVCLAG 95 (206)
T ss_pred --------chhhhHHHHCCCCEEEeccccccccccCcHHHHHHHHHhCCCEEEehh
Confidence 0122445667887643222 11 2337888888888999999974
No 469
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.75 E-value=5.6e+02 Score=22.17 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.-+.+...++..|+.+..........+++-+.+. +.++|.|| |-.+- .. =.++..+.+...+|+++||-.
T Consensus 45 ~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vI-GVGGG-k~-----iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 45 AGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVI-GVGGG-KT-----IDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred HHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEE-EecCc-HH-----HHHHHHHHHHcCCCEEEecCc
Confidence 3344556677778744443333334444444444 34566554 43331 11 267889999999999999953
No 470
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.73 E-value=4.1e+02 Score=20.58 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
....+...+++.|+.+......++. ....++.....++|.||+...... ....+ -+...+.||+.+-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-------~~~~~-~~~~~~ipvV~i~~ 86 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-------SAQRA-ALRRTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-------hHHHH-HHhcCCCCEEEEec
Confidence 4444555566667776655444433 234455555668998887643321 11222 33456788888843
No 471
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.71 E-value=5e+02 Score=21.58 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCCceEEEEec--C------------ChHHHHHHHHHHcCCCEEEEec---CCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLT--G------------DPKDMICQAAEQMHMDLLVVGS---RGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~--g------------~~~~~I~~~a~~~~~dliViG~---~~~~~~~~~~~gs~~~~i 175 (197)
...++.+.+...|+.+|.++-. | .-.++..+++++.++|.+.++- |+.......+--...+.|
T Consensus 119 ~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I 198 (285)
T PRK07709 119 TTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQV 198 (285)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHH
Confidence 4455667777889988876643 1 2357888999999999998854 333221111212345556
Q ss_pred HhhCCCCEEEECC
Q 044973 176 AHHVQCPIIIVKP 188 (197)
Q Consensus 176 l~~~~~pVlvv~~ 188 (197)
-...++|+ |++.
T Consensus 199 ~~~~~iPL-VLHG 210 (285)
T PRK07709 199 RDFTGVPL-VLHG 210 (285)
T ss_pred HHHHCCCE-EEeC
Confidence 66778896 5543
No 472
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=20.59 E-value=3.5e+02 Score=19.84 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHHcCCCEEEEec
Q 044973 110 SAALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQMHMDLLVVGS 157 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~ 157 (197)
..+.-..+...++..|+++....... .....-...++..++|++|-=.
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH 76 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIH 76 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 33445566667777788876644332 3678889999999999998643
No 473
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.58 E-value=4.5e+02 Score=21.83 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=54.3
Q ss_pred EEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 29 VMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 29 ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
++++=-+|=.+..-+..++.-.+. .++++.---.+.|....+...+.+ +
T Consensus 47 ~viAGPCsvEs~E~i~~~A~~vk~------------~Ga~~lRGgafKPRTSPYsFQGlg-------------------e 95 (286)
T COG2876 47 RVIAGPCSVESEEQVRETAESVKA------------AGAKALRGGAFKPRTSPYSFQGLG-------------------E 95 (286)
T ss_pred EEEecCcccCCHHHHHHHHHHHHH------------cchhhccCCcCCCCCCcccccccC-------------------H
Confidence 344333455566666666666677 677777666777765443333332 1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+-|..+.+...+.|..+.+++..-.-.+.+.++ +|+|=+|++.
T Consensus 96 ---~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-----~DilqvGARN 138 (286)
T COG2876 96 ---EGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY-----ADILQVGARN 138 (286)
T ss_pred ---HHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh-----hhHHHhcccc
Confidence 344445555667799999888765444444443 5677777654
No 474
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=20.40 E-value=3.6e+02 Score=19.89 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhcCCc---eEEEEecC--ChHHHHHHHHHHcCCCEEEE-ec--CCCCcccccccccHHHHHHh--
Q 044973 108 ENSAALLSRALQICKDKNVK---AETLVLTG--DPKDMICQAAEQMHMDLLVV-GS--RGLGKIKRALLGSVSDYCAH-- 177 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~---~~~~v~~g--~~~~~I~~~a~~~~~dliVi-G~--~~~~~~~~~~~gs~~~~il~-- 177 (197)
+-.+.+++.+.+.+...|+. ++...+.| ...-.+...++..++|-+|. |. ++.+..-......++..|.+
T Consensus 20 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~v~~gl~~vs 99 (141)
T PLN02404 20 IITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANSAASGVLSAG 99 (141)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHHHHHHHHHHH
Confidence 44556777788888888875 45555556 45666667777777887664 54 45444444444555555544
Q ss_pred -hCCCCEEE
Q 044973 178 -HVQCPIII 185 (197)
Q Consensus 178 -~~~~pVlv 185 (197)
+...||..
T Consensus 100 l~~~~PV~~ 108 (141)
T PLN02404 100 LNSGVPCIF 108 (141)
T ss_pred hccCCCEEE
Confidence 34677764
No 475
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.21 E-value=5.1e+02 Score=21.52 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCceEEEEec--C------------ChHHHHHHHHHHcCCCEEEEec---CCCCcccccccccHHHHH
Q 044973 113 LLSRALQICKDKNVKAETLVLT--G------------DPKDMICQAAEQMHMDLLVVGS---RGLGKIKRALLGSVSDYC 175 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~--g------------~~~~~I~~~a~~~~~dliViG~---~~~~~~~~~~~gs~~~~i 175 (197)
...++.+.+...|+.+|.++-. | .-.+...+++++.++|.+-+.- |+...... +--...+.|
T Consensus 116 ~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~-l~~~~l~~I 194 (283)
T PRK07998 116 FTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPR-IDIPLLKRI 194 (283)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCC-cCHHHHHHH
Confidence 4556667777889888766533 1 1356679999999999998864 33322111 111445667
Q ss_pred HhhCCCCEEE
Q 044973 176 AHHVQCPIII 185 (197)
Q Consensus 176 l~~~~~pVlv 185 (197)
-..+++|+.+
T Consensus 195 ~~~~~vPLVl 204 (283)
T PRK07998 195 AEVSPVPLVI 204 (283)
T ss_pred HhhCCCCEEE
Confidence 6677888554
No 476
>PRK09875 putative hydrolase; Provisional
Probab=20.17 E-value=3.5e+02 Score=22.51 Aligned_cols=47 Identities=9% Similarity=-0.087 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCC--CEEEEecCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHM--DLLVVGSRG 159 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~--dliViG~~~ 159 (197)
.++.+.....+-|.++.+|...++...++++..++.++ +-||+|.-.
T Consensus 140 vl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d 188 (292)
T PRK09875 140 VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCD 188 (292)
T ss_pred HHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCC
Confidence 34333444455588888876667666677888888787 778888654
No 477
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.12 E-value=4.3e+02 Score=20.65 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC--CCCEEEE
Q 044973 115 SRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV--QCPIIIV 186 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~--~~pVlvv 186 (197)
-.+.+.+.+.| .+..+...+..+.. ..+..++|.||++ .+.+..... |.. ..++++. ..|+|-|
T Consensus 15 yNLv~yl~~lg--~~v~V~rnd~~~~~--~~~~~~pd~iviS-PGPG~P~d~--G~~-~~~i~~~~~~~PiLGV 80 (191)
T COG0512 15 YNLVQYLRELG--AEVTVVRNDDISLE--LIEALKPDAIVIS-PGPGTPKDA--GIS-LELIRRFAGRIPILGV 80 (191)
T ss_pred HHHHHHHHHcC--CceEEEECCccCHH--HHhhcCCCEEEEc-CCCCChHHc--chH-HHHHHHhcCCCCEEEE
Confidence 34556666666 33334444422211 5566689999996 555555532 433 4455553 3799866
Done!