Query 044973
Match_columns 197
No_of_seqs 150 out of 1824
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 2.4E-26 8E-31 169.3 17.1 139 27-187 6-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 4.1E-26 1.4E-30 171.1 18.4 152 25-189 4-160 (162)
3 2dum_A Hypothetical protein PH 99.9 9.5E-26 3.3E-30 170.5 17.4 155 25-193 4-161 (170)
4 3idf_A USP-like protein; unive 99.9 2.5E-25 8.4E-30 162.5 16.0 136 26-187 1-138 (138)
5 3hgm_A Universal stress protei 99.9 4.8E-26 1.6E-30 167.7 12.3 142 26-186 2-147 (147)
6 3fg9_A Protein of universal st 99.9 4.3E-25 1.5E-29 164.7 16.8 137 26-187 15-156 (156)
7 3tnj_A Universal stress protei 99.9 3.5E-25 1.2E-29 163.8 13.1 143 26-190 6-149 (150)
8 2gm3_A Unknown protein; AT3G01 99.9 1.8E-24 6E-29 164.4 15.8 153 26-191 5-166 (175)
9 3dlo_A Universal stress protei 99.9 2.1E-24 7.2E-29 161.6 15.6 132 20-187 21-155 (155)
10 2z08_A Universal stress protei 99.9 1.8E-24 6E-29 158.0 14.7 135 26-187 2-137 (137)
11 1tq8_A Hypothetical protein RV 99.9 1.6E-24 5.5E-29 163.6 14.3 146 22-191 13-161 (163)
12 3fdx_A Putative filament prote 99.9 2.7E-24 9.2E-29 157.7 12.2 137 27-187 2-143 (143)
13 3olq_A Universal stress protei 99.9 4.4E-23 1.5E-27 170.1 16.7 146 26-191 7-153 (319)
14 3loq_A Universal stress protei 99.9 1E-22 3.6E-27 166.5 13.0 146 22-191 18-165 (294)
15 1jmv_A USPA, universal stress 99.9 9.1E-23 3.1E-27 149.3 10.1 138 26-190 2-140 (141)
16 3cis_A Uncharacterized protein 99.9 2.3E-21 7.8E-26 159.7 17.1 143 24-191 17-164 (309)
17 3ab8_A Putative uncharacterize 99.9 5.9E-22 2E-26 159.7 13.3 148 27-191 1-152 (268)
18 3mt0_A Uncharacterized protein 99.9 7.7E-21 2.6E-25 155.2 16.6 137 25-189 133-277 (290)
19 1q77_A Hypothetical protein AQ 99.9 3.5E-21 1.2E-25 140.4 13.1 129 26-187 4-138 (138)
20 3mt0_A Uncharacterized protein 99.9 2.7E-21 9.2E-26 157.9 13.2 124 25-190 6-130 (290)
21 3loq_A Universal stress protei 99.8 1.7E-20 5.7E-25 153.3 15.2 126 24-191 168-293 (294)
22 3cis_A Uncharacterized protein 99.8 2.2E-20 7.4E-25 153.8 15.8 136 25-189 170-307 (309)
23 3olq_A Universal stress protei 99.8 2.1E-20 7.2E-25 154.0 15.7 145 25-192 155-309 (319)
24 3ab8_A Putative uncharacterize 99.8 2.5E-18 8.6E-23 138.4 13.0 116 25-187 153-268 (268)
25 2iel_A Hypothetical protein TT 97.1 0.044 1.5E-06 39.2 15.0 128 27-186 2-133 (138)
26 1wy5_A TILS, hypothetical UPF0 94.7 0.35 1.2E-05 39.3 10.8 98 22-159 20-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 94.6 0.26 8.9E-06 42.4 10.3 99 22-159 14-129 (464)
28 4b4k_A N5-carboxyaminoimidazol 93.3 0.7 2.4E-05 34.5 9.0 71 113-191 37-111 (181)
29 2xry_A Deoxyribodipyrimidine p 92.4 1.7 5.8E-05 37.4 11.7 116 34-188 46-161 (482)
30 4grd_A N5-CAIR mutase, phospho 92.0 0.9 3.1E-05 33.7 8.1 71 113-191 27-101 (173)
31 3umv_A Deoxyribodipyrimidine p 91.9 2.8 9.6E-05 36.4 12.6 119 34-187 47-167 (506)
32 3trh_A Phosphoribosylaminoimid 90.8 1.3 4.6E-05 32.7 8.0 70 113-190 21-94 (169)
33 3kuu_A Phosphoribosylaminoimid 90.8 1.5 5E-05 32.6 8.1 70 113-190 27-100 (174)
34 2ywx_A Phosphoribosylaminoimid 90.5 1.5 5.2E-05 32.0 7.9 68 113-188 14-82 (157)
35 3oow_A Phosphoribosylaminoimid 90.4 2.4 8.2E-05 31.2 9.0 71 113-191 20-94 (166)
36 3lp6_A Phosphoribosylaminoimid 90.1 1 3.6E-05 33.4 6.9 70 113-190 22-95 (174)
37 3rg8_A Phosphoribosylaminoimid 90.1 2.2 7.5E-05 31.2 8.5 70 113-190 17-91 (159)
38 3ih5_A Electron transfer flavo 90.0 1.8 6E-05 33.3 8.5 86 26-159 3-101 (217)
39 1xmp_A PURE, phosphoribosylami 90.0 1.8 6.2E-05 32.0 8.1 70 113-190 26-99 (170)
40 3ors_A N5-carboxyaminoimidazol 89.7 2 6.9E-05 31.5 8.1 71 113-191 18-92 (163)
41 1o97_C Electron transferring f 89.5 3.7 0.00013 32.5 10.2 84 31-161 31-124 (264)
42 3g40_A Na-K-CL cotransporter; 89.4 1.2 3.9E-05 36.0 7.1 103 40-192 179-281 (294)
43 3g40_A Na-K-CL cotransporter; 89.3 7.3 0.00025 31.3 12.6 124 27-192 21-150 (294)
44 1u11_A PURE (N5-carboxyaminoim 88.8 2.4 8.2E-05 31.7 8.0 70 113-190 36-109 (182)
45 1o4v_A Phosphoribosylaminoimid 88.2 2.3 7.9E-05 31.8 7.6 70 113-190 28-101 (183)
46 2wq7_A RE11660P; lyase-DNA com 85.7 13 0.00045 32.3 12.4 130 28-188 30-161 (543)
47 1zun_A Sulfate adenylyltransfe 83.6 3.6 0.00012 33.5 7.3 94 26-161 46-158 (325)
48 3kcq_A Phosphoribosylglycinami 82.2 9.4 0.00032 29.2 8.8 62 119-189 52-113 (215)
49 1efv_B Electron transfer flavo 82.1 14 0.00047 29.0 10.0 80 35-161 38-128 (255)
50 3p9x_A Phosphoribosylglycinami 80.9 16 0.00056 27.7 10.4 84 27-159 3-91 (211)
51 1np7_A DNA photolyase; protein 80.5 23 0.0008 30.2 11.7 127 28-188 7-137 (489)
52 1efp_B ETF, protein (electron 80.1 15 0.0005 28.7 9.5 82 33-161 33-125 (252)
53 2j07_A Deoxyribodipyrimidine p 80.1 15 0.00051 30.9 10.2 94 68-188 28-121 (420)
54 1ni5_A Putative cell cycle pro 79.8 9.2 0.00031 32.3 8.8 41 26-77 13-53 (433)
55 2j4d_A Cryptochrome 3, cryptoc 79.3 30 0.001 29.9 13.1 127 27-188 40-174 (525)
56 1iv0_A Hypothetical protein; r 78.5 8.4 0.00029 25.6 6.6 54 136-190 38-95 (98)
57 3fni_A Putative diflavin flavo 77.8 9.7 0.00033 27.2 7.3 44 116-161 24-68 (159)
58 1k92_A Argininosuccinate synth 77.5 7.6 0.00026 33.3 7.5 36 26-77 10-45 (455)
59 3da8_A Probable 5'-phosphoribo 76.9 14 0.00048 28.2 8.2 42 118-159 53-99 (215)
60 1owl_A Photolyase, deoxyribodi 76.4 20 0.0007 30.6 10.1 100 68-188 30-129 (484)
61 2h31_A Multifunctional protein 75.1 8.9 0.00031 32.5 7.2 69 113-189 280-353 (425)
62 4ds3_A Phosphoribosylglycinami 73.8 26 0.00089 26.5 9.0 62 119-189 51-117 (209)
63 1dnp_A DNA photolyase; DNA rep 72.5 16 0.00054 31.2 8.4 74 67-157 28-103 (471)
64 3tvs_A Cryptochrome-1; circadi 72.4 17 0.00058 31.7 8.6 100 67-187 33-135 (538)
65 3fy4_A 6-4 photolyase; DNA rep 72.3 10 0.00036 33.1 7.2 79 105-187 61-139 (537)
66 2e0i_A 432AA long hypothetical 71.6 15 0.0005 31.2 7.9 100 67-188 27-126 (440)
67 3bl5_A Queuosine biosynthesis 70.6 29 0.001 25.6 9.5 36 26-77 3-38 (219)
68 2hma_A Probable tRNA (5-methyl 69.9 26 0.00089 28.9 8.9 96 26-159 9-133 (376)
69 1nu0_A Hypothetical protein YQ 69.6 6.5 0.00022 27.9 4.5 54 137-190 41-98 (138)
70 3d0c_A Dihydrodipicolinate syn 69.0 40 0.0014 27.0 9.7 73 113-187 70-144 (314)
71 1ccw_A Protein (glutamate muta 68.8 26 0.00089 24.3 7.6 67 117-186 23-91 (137)
72 3tqr_A Phosphoribosylglycinami 68.8 36 0.0012 25.9 9.9 62 119-189 48-114 (215)
73 2ehh_A DHDPS, dihydrodipicolin 68.3 39 0.0013 26.7 9.4 76 113-189 58-135 (294)
74 2yxg_A DHDPS, dihydrodipicolin 66.9 40 0.0014 26.6 9.2 76 113-189 58-135 (289)
75 2vc6_A MOSA, dihydrodipicolina 66.8 41 0.0014 26.6 9.2 76 113-189 58-135 (292)
76 2r8w_A AGR_C_1641P; APC7498, d 66.8 46 0.0016 26.9 9.6 76 113-189 92-169 (332)
77 3o1l_A Formyltetrahydrofolate 66.7 48 0.0017 26.6 9.9 84 25-159 104-191 (302)
78 1xky_A Dihydrodipicolinate syn 66.2 45 0.0016 26.5 9.4 76 113-189 70-147 (301)
79 1sur_A PAPS reductase; assimil 66.1 38 0.0013 25.1 9.1 35 27-77 45-79 (215)
80 1vl2_A Argininosuccinate synth 65.3 37 0.0013 28.7 8.9 35 27-77 15-49 (421)
81 2yxb_A Coenzyme B12-dependent 65.0 22 0.00075 25.5 6.7 66 117-186 38-106 (161)
82 1o5k_A DHDPS, dihydrodipicolin 64.8 46 0.0016 26.5 9.2 76 113-189 70-147 (306)
83 2der_A TRNA-specific 2-thiouri 64.8 44 0.0015 27.6 9.3 100 22-159 13-142 (380)
84 2v9d_A YAGE; dihydrodipicolini 64.7 45 0.0015 27.1 9.2 76 113-189 89-166 (343)
85 2rfg_A Dihydrodipicolinate syn 64.6 43 0.0015 26.6 8.9 76 113-189 58-135 (297)
86 3cpr_A Dihydrodipicolinate syn 64.3 52 0.0018 26.2 9.4 64 126-189 86-151 (304)
87 1f6k_A N-acetylneuraminate lya 64.3 41 0.0014 26.6 8.8 75 113-188 62-138 (293)
88 3m5v_A DHDPS, dihydrodipicolin 64.2 52 0.0018 26.1 9.4 77 113-189 65-143 (301)
89 2nz2_A Argininosuccinate synth 63.9 42 0.0015 28.1 9.1 35 27-77 6-40 (413)
90 3rjz_A N-type ATP pyrophosphat 63.1 30 0.001 26.8 7.5 92 27-158 5-99 (237)
91 2wkj_A N-acetylneuraminate lya 62.4 45 0.0015 26.5 8.7 75 113-188 69-146 (303)
92 1y80_A Predicted cobalamin bin 62.1 25 0.00087 26.1 6.8 69 117-188 108-179 (210)
93 3lou_A Formyltetrahydrofolate 62.0 59 0.002 25.9 10.6 84 25-159 94-181 (292)
94 3n0v_A Formyltetrahydrofolate 62.0 58 0.002 25.8 10.5 103 26-188 90-196 (286)
95 3hly_A Flavodoxin-like domain; 61.5 23 0.00079 25.1 6.3 44 116-161 20-63 (161)
96 1kor_A Argininosuccinate synth 61.3 42 0.0014 28.0 8.6 36 27-77 1-36 (400)
97 2ojp_A DHDPS, dihydrodipicolin 61.0 36 0.0012 26.9 7.9 76 113-189 59-136 (292)
98 2ywr_A Phosphoribosylglycinami 60.9 51 0.0017 24.8 11.0 63 118-189 44-111 (216)
99 2i2x_B MTAC, methyltransferase 60.7 41 0.0014 26.0 8.0 69 117-188 143-212 (258)
100 3en0_A Cyanophycinase; serine 60.7 13 0.00046 29.7 5.2 115 20-179 19-140 (291)
101 1meo_A Phosophoribosylglycinam 59.4 54 0.0018 24.7 11.5 105 27-189 1-110 (209)
102 2pg3_A Queuosine biosynthesis 59.3 53 0.0018 24.6 10.0 35 27-77 3-37 (232)
103 3eb2_A Putative dihydrodipicol 59.3 65 0.0022 25.5 10.3 67 125-191 73-141 (300)
104 3k32_A Uncharacterized protein 59.2 35 0.0012 25.2 7.2 36 26-77 6-41 (203)
105 3a5f_A Dihydrodipicolinate syn 58.5 38 0.0013 26.7 7.6 76 113-189 59-136 (291)
106 3na8_A Putative dihydrodipicol 57.3 71 0.0024 25.5 9.1 76 113-189 82-159 (315)
107 1u3d_A Cryptochrome 1 apoprote 57.2 92 0.0031 26.6 11.8 77 109-188 62-138 (509)
108 1jq5_A Glycerol dehydrogenase; 57.2 26 0.0009 28.6 6.6 69 113-189 46-119 (370)
109 3l21_A DHDPS, dihydrodipicolin 57.2 72 0.0024 25.4 9.1 76 113-189 73-150 (304)
110 2qv7_A Diacylglycerol kinase D 56.7 21 0.00073 28.7 5.9 71 113-189 43-115 (337)
111 3s40_A Diacylglycerol kinase; 56.3 23 0.0008 28.1 6.0 70 113-189 27-98 (304)
112 3h5i_A Response regulator/sens 56.3 41 0.0014 22.3 9.0 68 117-190 21-88 (140)
113 2wsi_A FAD synthetase; transfe 56.2 46 0.0016 26.5 7.8 105 27-162 54-170 (306)
114 3tak_A DHDPS, dihydrodipicolin 56.2 72 0.0025 25.1 9.3 77 112-189 58-136 (291)
115 3qze_A DHDPS, dihydrodipicolin 55.9 77 0.0026 25.3 9.4 76 113-189 81-158 (314)
116 3nbm_A PTS system, lactose-spe 55.9 11 0.00037 25.5 3.4 61 116-188 25-86 (108)
117 2nwr_A 2-dehydro-3-deoxyphosph 54.7 71 0.0024 25.1 8.4 63 114-188 64-126 (267)
118 3auf_A Glycinamide ribonucleot 54.2 70 0.0024 24.4 10.3 63 118-189 65-132 (229)
119 2l2q_A PTS system, cellobiose- 54.0 38 0.0013 22.4 6.0 62 115-188 22-84 (109)
120 3flu_A DHDPS, dihydrodipicolin 53.7 81 0.0028 24.9 9.4 76 113-189 65-142 (297)
121 3dm5_A SRP54, signal recogniti 53.5 1E+02 0.0035 26.1 11.1 48 116-163 146-196 (443)
122 2bon_A Lipid kinase; DAG kinas 53.4 40 0.0014 27.0 7.0 69 115-189 47-119 (332)
123 1vbk_A Hypothetical protein PH 53.3 59 0.002 25.9 7.9 32 27-75 180-211 (307)
124 2r91_A 2-keto-3-deoxy-(6-phosp 52.7 71 0.0024 25.0 8.3 54 136-189 75-131 (286)
125 3daq_A DHDPS, dihydrodipicolin 52.1 85 0.0029 24.7 8.7 65 125-189 71-137 (292)
126 2ohh_A Type A flavoprotein FPR 52.0 92 0.0032 25.1 11.0 46 113-160 273-318 (404)
127 2l69_A Rossmann 2X3 fold prote 51.6 12 0.00039 24.9 2.8 48 113-160 14-61 (134)
128 3b4u_A Dihydrodipicolinate syn 51.3 66 0.0022 25.4 7.9 64 126-189 73-142 (294)
129 1vhx_A Putative holliday junct 51.3 11 0.00039 26.9 3.0 55 136-190 42-100 (150)
130 3si9_A DHDPS, dihydrodipicolin 51.1 93 0.0032 24.9 9.2 76 113-189 80-157 (315)
131 2yvk_A Methylthioribose-1-phos 49.5 41 0.0014 27.9 6.5 65 119-189 227-295 (374)
132 3cg0_A Response regulator rece 49.4 52 0.0018 21.5 8.7 48 139-189 44-91 (140)
133 3pm6_A Putative fructose-bisph 49.3 26 0.00089 28.3 5.1 71 116-186 17-88 (306)
134 3qjg_A Epidermin biosynthesis 49.2 26 0.00088 25.8 4.8 30 20-52 2-31 (175)
135 1e5d_A Rubredoxin\:oxygen oxid 49.1 1E+02 0.0035 24.8 12.4 41 119-161 275-315 (402)
136 1qv9_A F420-dependent methylen 49.0 38 0.0013 26.5 5.7 46 141-190 56-101 (283)
137 2a0u_A Initiation factor 2B; S 48.6 44 0.0015 27.8 6.6 65 119-189 231-299 (383)
138 3ezx_A MMCP 1, monomethylamine 48.2 36 0.0012 25.7 5.6 67 117-186 112-183 (215)
139 3l52_A Orotidine 5'-phosphate 47.0 1.1E+02 0.0036 24.4 8.4 93 27-155 23-132 (284)
140 3eod_A Protein HNR; response r 46.9 56 0.0019 21.1 6.7 65 117-189 23-88 (130)
141 1gvf_A Tagatose-bisphosphate a 46.7 23 0.0008 28.3 4.4 70 117-186 9-80 (286)
142 3obi_A Formyltetrahydrofolate 46.6 62 0.0021 25.7 7.0 40 120-159 133-176 (288)
143 4dad_A Putative pilus assembly 46.4 60 0.0021 21.5 6.2 52 134-189 51-104 (146)
144 1t9k_A Probable methylthioribo 46.3 44 0.0015 27.4 6.2 65 119-189 202-270 (347)
145 1w2w_B 5-methylthioribose-1-ph 45.8 24 0.00082 26.3 4.2 64 120-189 25-94 (191)
146 2ywb_A GMP synthase [glutamine 45.7 1.4E+02 0.0048 25.4 11.2 35 27-77 210-244 (503)
147 3ecs_A Translation initiation 45.5 46 0.0016 26.9 6.1 64 118-189 165-232 (315)
148 3gxq_A Putative regulator of t 45.2 23 0.00078 19.8 2.9 27 127-153 11-38 (54)
149 3f6p_A Transcriptional regulat 45.1 59 0.002 20.8 8.3 62 119-188 20-81 (120)
150 2dpl_A GMP synthetase, GMP syn 45.1 1.1E+02 0.0038 24.2 8.4 36 27-77 21-56 (308)
151 2l69_A Rossmann 2X3 fold prote 45.1 64 0.0022 21.3 6.4 37 112-148 88-124 (134)
152 2qjg_A Putative aldolase MJ040 45.0 1E+02 0.0035 23.6 8.1 70 112-189 132-211 (273)
153 3e96_A Dihydrodipicolinate syn 44.6 1.2E+02 0.004 24.2 8.4 73 113-187 70-144 (316)
154 2q5c_A NTRC family transcripti 44.2 93 0.0032 22.9 8.9 49 129-189 30-79 (196)
155 3elf_A Fructose-bisphosphate a 44.1 38 0.0013 27.9 5.4 74 115-188 10-95 (349)
156 3q94_A Fructose-bisphosphate a 43.3 26 0.00089 28.0 4.2 70 117-186 12-86 (288)
157 2amj_A Modulator of drug activ 43.2 88 0.003 23.0 7.1 51 109-161 31-82 (204)
158 3nrb_A Formyltetrahydrofolate 43.0 62 0.0021 25.7 6.4 85 25-159 87-175 (287)
159 2nuw_A 2-keto-3-deoxygluconate 42.4 64 0.0022 25.4 6.5 54 136-189 76-132 (288)
160 2ppv_A Uncharacterized protein 42.2 35 0.0012 27.9 4.9 51 137-190 167-219 (332)
161 1t5o_A EIF2BD, translation ini 42.1 49 0.0017 27.1 5.8 65 119-189 200-267 (351)
162 3vk5_A MOEO5; TIM barrel, tran 41.5 39 0.0013 27.0 4.9 47 141-188 58-105 (286)
163 1w3i_A EDA, 2-keto-3-deoxy glu 41.1 66 0.0023 25.4 6.4 54 136-189 76-132 (293)
164 1y5e_A Molybdenum cofactor bio 41.0 55 0.0019 23.5 5.5 40 117-156 36-79 (169)
165 3exr_A RMPD (hexulose-6-phosph 40.9 51 0.0017 24.9 5.5 23 26-49 5-27 (221)
166 3iwt_A 178AA long hypothetical 40.9 53 0.0018 23.6 5.4 40 117-156 45-88 (178)
167 3ayv_A Putative uncharacterize 39.9 78 0.0027 23.6 6.5 80 40-149 75-154 (254)
168 2p0y_A Hypothetical protein LP 39.7 35 0.0012 27.9 4.6 51 136-189 177-229 (341)
169 2q9u_A A-type flavoprotein; fl 39.3 1.5E+02 0.0052 24.0 12.5 71 114-186 274-347 (414)
170 4es1_A BH0342 protein; ferredo 39.2 25 0.00085 23.4 3.0 30 18-52 1-33 (100)
171 2is8_A Molybdopterin biosynthe 38.9 59 0.002 23.2 5.3 40 117-156 26-69 (164)
172 3hv2_A Response regulator/HD d 38.3 88 0.003 20.9 7.8 65 117-189 30-95 (153)
173 3zqu_A Probable aromatic acid 37.8 60 0.002 24.5 5.3 35 26-73 4-38 (209)
174 1vb5_A Translation initiation 37.6 83 0.0029 24.7 6.4 63 121-191 156-222 (276)
175 1qzu_A Hypothetical protein MD 37.5 37 0.0013 25.6 4.1 31 21-51 14-44 (206)
176 1jkx_A GART;, phosphoribosylgl 37.4 1.3E+02 0.0044 22.5 11.8 63 118-189 43-110 (212)
177 3r89_A Orotidine 5'-phosphate 37.4 1.5E+02 0.0053 23.5 9.0 94 27-156 18-128 (290)
178 3av3_A Phosphoribosylglycinami 37.2 1.3E+02 0.0044 22.5 11.8 64 117-189 45-113 (212)
179 2ftp_A Hydroxymethylglutaryl-C 37.0 1.5E+02 0.0052 23.3 8.8 77 108-185 120-208 (302)
180 3tqi_A GMP synthase [glutamine 36.9 60 0.0021 28.0 5.9 36 27-77 231-266 (527)
181 3ctl_A D-allulose-6-phosphate 36.5 59 0.002 24.8 5.2 44 114-158 154-198 (231)
182 3egc_A Putative ribose operon 36.3 1.4E+02 0.0047 22.5 9.9 71 112-190 25-97 (291)
183 2pju_A Propionate catabolism o 36.2 1.4E+02 0.0048 22.6 9.4 61 117-189 28-91 (225)
184 2b4a_A BH3024; flavodoxin-like 35.8 87 0.003 20.4 5.6 61 119-187 33-95 (138)
185 2o2z_A Hypothetical protein; s 35.7 40 0.0014 27.4 4.2 51 137-190 168-220 (323)
186 2hmc_A AGR_L_411P, dihydrodipi 35.6 1.8E+02 0.006 23.6 8.6 64 126-189 93-160 (344)
187 3h5d_A DHDPS, dihydrodipicolin 35.5 1.7E+02 0.0057 23.3 8.6 64 126-189 77-143 (311)
188 2ejb_A Probable aromatic acid 35.5 69 0.0024 23.7 5.3 26 27-52 2-27 (189)
189 3inp_A D-ribulose-phosphate 3- 35.4 42 0.0014 26.0 4.2 45 113-158 181-225 (246)
190 2q62_A ARSH; alpha/beta, flavo 35.1 49 0.0017 25.5 4.6 47 113-161 53-110 (247)
191 1sbz_A Probable aromatic acid 35.0 67 0.0023 24.0 5.2 35 27-73 1-35 (197)
192 1mkz_A Molybdenum cofactor bio 34.9 90 0.0031 22.4 5.8 40 117-156 33-76 (172)
193 2q7x_A UPF0052 protein SP_1565 34.8 40 0.0014 27.4 4.1 50 137-189 174-225 (326)
194 3rpe_A MDAB, modulator of drug 34.4 1.1E+02 0.0039 23.0 6.5 63 112-176 47-110 (218)
195 2a5l_A Trp repressor binding p 33.8 82 0.0028 22.5 5.5 13 148-160 70-82 (200)
196 2xxa_A Signal recognition part 33.5 2.1E+02 0.0072 23.9 10.2 36 28-75 102-138 (433)
197 4f2d_A L-arabinose isomerase; 33.5 2.3E+02 0.0078 24.3 9.7 75 104-188 25-105 (500)
198 3jy6_A Transcriptional regulat 33.3 1.5E+02 0.0051 22.1 10.4 69 112-189 24-94 (276)
199 3m9w_A D-xylose-binding peripl 33.0 1.6E+02 0.0055 22.4 10.0 72 113-190 20-93 (313)
200 2qr3_A Two-component system re 32.9 1E+02 0.0035 20.0 6.8 65 117-188 19-88 (140)
201 1g63_A Epidermin modifying enz 32.7 47 0.0016 24.4 3.9 26 27-52 3-28 (181)
202 2qxy_A Response regulator; reg 32.7 1E+02 0.0036 20.1 7.4 64 117-189 20-84 (142)
203 3o1i_D Periplasmic protein TOR 32.6 1.6E+02 0.0054 22.2 8.8 68 113-187 23-94 (304)
204 3rfq_A Pterin-4-alpha-carbinol 32.5 95 0.0032 22.8 5.6 41 116-156 53-96 (185)
205 3l4e_A Uncharacterized peptida 32.3 44 0.0015 25.0 3.8 72 113-186 45-119 (206)
206 1ycg_A Nitric oxide reductase; 32.3 1.9E+02 0.0066 23.1 12.1 41 119-161 274-314 (398)
207 1qkk_A DCTD, C4-dicarboxylate 32.1 97 0.0033 20.7 5.5 62 119-188 21-83 (155)
208 3fkr_A L-2-keto-3-deoxyarabona 32.1 1.9E+02 0.0065 22.9 8.9 64 126-189 78-146 (309)
209 3kbq_A Protein TA0487; structu 32.0 81 0.0028 23.0 5.1 41 116-156 27-69 (172)
210 3hzh_A Chemotaxis response reg 31.8 1.2E+02 0.004 20.4 8.5 65 118-189 53-120 (157)
211 3n4p_A Terminase subunit UL89 31.8 1.9E+02 0.0065 22.8 10.9 103 24-155 129-237 (279)
212 3cu2_A Ribulose-5-phosphate 3- 31.7 1.1E+02 0.0038 23.4 6.1 49 111-159 171-220 (237)
213 2oq2_A Phosphoadenosine phosph 31.6 1.7E+02 0.006 22.3 7.6 39 26-77 41-79 (261)
214 3bul_A Methionine synthase; tr 31.5 1E+02 0.0036 27.1 6.5 69 117-188 118-187 (579)
215 1vp8_A Hypothetical protein AF 31.4 1.6E+02 0.0054 22.1 6.6 78 108-187 26-105 (201)
216 3qw3_A Orotidine-5-phosphate d 31.4 1.1E+02 0.0036 23.8 6.0 26 27-52 14-40 (255)
217 2vzf_A NADH-dependent FMN redu 31.2 1E+02 0.0036 22.2 5.8 45 114-160 22-80 (197)
218 3dbi_A Sugar-binding transcrip 31.2 1.8E+02 0.0063 22.5 10.1 70 113-189 81-152 (338)
219 3f6c_A Positive transcription 31.2 1.1E+02 0.0036 19.7 7.9 66 117-189 17-83 (134)
220 3e61_A Putative transcriptiona 31.2 1.6E+02 0.0055 21.8 8.9 68 112-189 25-95 (277)
221 1s8n_A Putative antiterminator 31.1 1.4E+02 0.0048 21.1 8.7 61 120-187 32-92 (205)
222 1of8_A Phospho-2-dehydro-3-deo 31.1 1.9E+02 0.0065 23.9 7.6 128 27-188 67-203 (370)
223 3dz1_A Dihydrodipicolinate syn 31.0 2E+02 0.0068 22.8 8.1 75 112-189 65-143 (313)
224 3i42_A Response regulator rece 30.8 1.1E+02 0.0036 19.6 8.8 66 117-190 19-87 (127)
225 2gkg_A Response regulator homo 30.7 1E+02 0.0035 19.4 8.2 59 121-186 25-86 (127)
226 2f6u_A GGGPS, (S)-3-O-geranylg 30.7 70 0.0024 24.6 4.7 48 139-189 23-70 (234)
227 3hdv_A Response regulator; PSI 30.6 1.1E+02 0.0038 19.8 7.4 65 118-189 24-90 (136)
228 3l6u_A ABC-type sugar transpor 30.4 1.7E+02 0.0058 21.9 10.2 73 112-190 25-99 (293)
229 1ta9_A Glycerol dehydrogenase; 30.2 1.4E+02 0.0047 25.2 6.9 68 113-189 106-178 (450)
230 2isw_A Putative fructose-1,6-b 30.2 93 0.0032 25.2 5.5 71 116-186 8-81 (323)
231 1ydn_A Hydroxymethylglutaryl-C 30.1 1.9E+02 0.0067 22.4 9.3 75 110-185 118-204 (295)
232 1dos_A Aldolase class II; lyas 30.0 73 0.0025 26.2 5.0 75 114-188 17-109 (358)
233 3n9r_A Fructose-bisphosphate a 29.8 71 0.0024 25.7 4.8 71 116-186 7-80 (307)
234 2o8v_A Phosphoadenosine phosph 29.4 1.9E+02 0.0064 22.0 8.5 23 27-49 46-68 (252)
235 2g2c_A Putative molybdenum cof 29.4 81 0.0028 22.5 4.7 36 121-156 38-76 (167)
236 2j48_A Two-component sensor ki 29.4 1E+02 0.0035 18.9 8.8 64 118-189 18-84 (119)
237 3ce9_A Glycerol dehydrogenase; 29.1 54 0.0019 26.5 4.1 69 113-190 49-122 (354)
238 2rjn_A Response regulator rece 28.3 1.3E+02 0.0046 19.9 6.8 63 118-188 24-87 (154)
239 3l49_A ABC sugar (ribose) tran 28.2 1.9E+02 0.0064 21.6 8.6 73 112-190 22-96 (291)
240 2zay_A Response regulator rece 28.1 1.3E+02 0.0044 19.7 7.5 50 135-189 39-91 (147)
241 3inp_A D-ribulose-phosphate 3- 27.9 52 0.0018 25.5 3.6 59 114-174 123-181 (246)
242 2fz5_A Flavodoxin; alpha/beta 27.9 1.3E+02 0.0045 19.8 8.2 42 113-160 16-57 (137)
243 3qfe_A Putative dihydrodipicol 27.8 2.3E+02 0.0078 22.5 8.9 66 126-191 81-150 (318)
244 3ctl_A D-allulose-6-phosphate 27.7 63 0.0021 24.7 4.0 57 114-172 95-151 (231)
245 3grf_A Ornithine carbamoyltran 27.7 2.4E+02 0.0083 22.7 7.8 27 150-185 101-127 (328)
246 3huu_A Transcription regulator 27.6 2E+02 0.0067 21.8 7.1 70 112-189 44-115 (305)
247 1rtt_A Conserved hypothetical 27.5 55 0.0019 23.6 3.6 20 140-161 65-84 (193)
248 1rvg_A Fructose-1,6-bisphospha 27.4 80 0.0027 25.4 4.7 70 116-186 7-78 (305)
249 3o3m_A Alpha subunit 2-hydroxy 27.2 66 0.0023 26.7 4.4 55 136-190 321-375 (408)
250 3rot_A ABC sugar transporter, 27.0 2E+02 0.0069 21.6 8.7 72 113-190 21-96 (297)
251 3pzy_A MOG; ssgcid, seattle st 26.7 78 0.0027 22.7 4.2 39 117-156 32-73 (164)
252 1jlj_A Gephyrin; globular alph 26.5 1.4E+02 0.0048 21.8 5.7 40 117-156 39-85 (189)
253 1uf3_A Hypothetical protein TT 26.5 1.3E+02 0.0044 21.6 5.6 8 70-77 7-14 (228)
254 3gv0_A Transcriptional regulat 26.5 2E+02 0.007 21.5 8.9 70 112-189 27-98 (288)
255 3dx5_A Uncharacterized protein 26.2 2.1E+02 0.0071 21.5 8.1 82 38-151 81-165 (286)
256 3w01_A Heptaprenylglyceryl pho 26.2 1.3E+02 0.0044 23.2 5.5 49 139-190 26-74 (235)
257 3vmk_A 3-isopropylmalate dehyd 26.2 2.6E+02 0.0087 23.1 7.6 28 36-75 178-205 (375)
258 5nul_A Flavodoxin; electron tr 26.1 1.5E+02 0.005 19.7 6.1 42 113-160 15-56 (138)
259 3lqk_A Dipicolinate synthase s 26.0 82 0.0028 23.5 4.3 28 25-52 6-34 (201)
260 3rag_A Uncharacterized protein 26.0 74 0.0025 24.7 4.1 39 25-76 9-48 (242)
261 2pjk_A 178AA long hypothetical 26.0 1.6E+02 0.0055 21.3 5.9 40 117-156 45-88 (178)
262 1uuy_A CNX1, molybdopterin bio 25.8 1.4E+02 0.0049 21.1 5.5 32 125-156 43-78 (167)
263 3t8y_A CHEB, chemotaxis respon 25.8 1.6E+02 0.0054 20.0 8.8 50 134-188 57-106 (164)
264 3gk0_A PNP synthase, pyridoxin 25.5 1.4E+02 0.0047 23.7 5.6 43 111-156 141-183 (278)
265 3hs3_A Ribose operon repressor 25.3 1.8E+02 0.0062 21.7 6.4 65 112-189 27-94 (277)
266 3gt7_A Sensor protein; structu 25.3 1.6E+02 0.0053 19.7 8.1 65 117-189 23-90 (154)
267 2q8u_A Exonuclease, putative; 25.2 76 0.0026 25.1 4.3 23 112-136 48-70 (336)
268 3k4h_A Putative transcriptiona 25.1 2.1E+02 0.0073 21.3 8.4 69 113-189 31-101 (292)
269 3cz5_A Two-component response 25.0 1.5E+02 0.0053 19.6 7.1 50 135-189 38-88 (153)
270 2pbq_A Molybdenum cofactor bio 24.8 1.5E+02 0.005 21.4 5.5 34 122-156 38-75 (178)
271 3zxs_A Cryptochrome B, rscryb; 24.7 2.6E+02 0.0089 24.2 7.7 76 105-189 60-140 (522)
272 3n0r_A Response regulator; sig 24.6 2.4E+02 0.0082 21.7 8.9 67 117-189 176-242 (286)
273 3vzx_A Heptaprenylglyceryl pho 24.6 88 0.003 24.0 4.3 48 140-190 22-69 (228)
274 3q9s_A DNA-binding response re 24.5 2.2E+02 0.0075 21.1 8.0 63 119-189 55-117 (249)
275 2lpm_A Two-component response 24.4 1.6E+02 0.0056 19.7 6.8 64 118-189 25-88 (123)
276 1wpw_A 3-isopropylmalate dehyd 24.4 2.5E+02 0.0084 22.8 7.1 30 36-77 143-172 (336)
277 3qay_A Endolysin; amidase A/B 24.2 2E+02 0.007 20.7 6.7 43 113-155 34-83 (180)
278 3cg4_A Response regulator rece 24.0 1.5E+02 0.0052 19.2 8.5 64 118-189 24-90 (142)
279 3h75_A Periplasmic sugar-bindi 23.9 2.6E+02 0.0087 21.7 8.0 70 113-189 22-95 (350)
280 1tqx_A D-ribulose-5-phosphate 23.9 1.8E+02 0.0063 21.9 6.0 54 120-173 109-162 (227)
281 3uhj_A Probable glycerol dehyd 23.8 1.3E+02 0.0046 24.7 5.6 69 113-189 67-139 (387)
282 3kht_A Response regulator; PSI 23.7 1.6E+02 0.0054 19.2 7.6 67 117-189 21-90 (144)
283 1sqs_A Conserved hypothetical 23.4 2E+02 0.0067 21.5 6.2 20 139-160 71-90 (242)
284 3obi_A Formyltetrahydrofolate 23.0 1.7E+02 0.006 23.0 5.9 122 27-187 50-173 (288)
285 1mvl_A PPC decarboxylase athal 23.0 1.1E+02 0.0037 23.0 4.5 27 26-52 19-45 (209)
286 2fzv_A Putative arsenical resi 22.9 88 0.003 24.7 4.1 47 113-161 77-135 (279)
287 1xrs_B D-lysine 5,6-aminomutas 22.8 2.2E+02 0.0074 22.2 6.3 25 136-160 167-191 (262)
288 3qxc_A Dethiobiotin synthetase 22.7 1.4E+02 0.0046 22.9 5.1 49 139-188 119-169 (242)
289 2i0f_A 6,7-dimethyl-8-ribityll 22.7 2.2E+02 0.0074 20.4 10.0 78 108-185 25-115 (157)
290 3k9c_A Transcriptional regulat 22.7 2.5E+02 0.0084 21.1 7.9 69 112-189 28-97 (289)
291 2rgy_A Transcriptional regulat 22.6 2.5E+02 0.0084 21.1 8.7 69 113-189 26-99 (290)
292 1srr_A SPO0F, sporulation resp 22.5 1.5E+02 0.0052 18.6 7.5 62 119-188 21-83 (124)
293 1ydg_A Trp repressor binding p 22.5 83 0.0028 22.9 3.8 12 149-160 78-89 (211)
294 2x9q_A Cyclodipeptide syntheta 22.3 2.1E+02 0.0072 22.7 6.0 40 26-77 80-121 (289)
295 2yvq_A Carbamoyl-phosphate syn 22.3 1.4E+02 0.0047 20.7 4.7 63 120-184 62-129 (143)
296 3qk7_A Transcriptional regulat 22.1 2.6E+02 0.0087 21.0 10.6 70 112-189 27-97 (294)
297 1a3w_A Pyruvate kinase; allost 22.1 1.4E+02 0.0047 25.8 5.4 45 137-190 382-427 (500)
298 3qxb_A Putative xylose isomera 22.0 2.7E+02 0.0094 21.4 7.2 82 40-148 113-200 (316)
299 3grc_A Sensor protein, kinase; 21.8 1.7E+02 0.0058 18.9 8.6 64 118-189 23-89 (140)
300 3dff_A Teicoplanin pseudoaglyc 21.7 2.8E+02 0.0096 21.4 11.9 50 138-187 137-186 (273)
301 3uug_A Multiple sugar-binding 21.6 2.7E+02 0.0092 21.2 9.3 72 113-190 21-94 (330)
302 1viz_A PCRB protein homolog; s 21.5 1.2E+02 0.0041 23.3 4.5 48 139-189 23-70 (240)
303 3mcu_A Dipicolinate synthase, 21.3 1.1E+02 0.0038 22.9 4.2 35 26-73 5-40 (207)
304 3sho_A Transcriptional regulat 21.2 2.2E+02 0.0075 20.0 6.9 36 26-74 87-122 (187)
305 3r8w_A 3-isopropylmalate dehyd 21.0 3.6E+02 0.012 22.5 7.8 28 36-75 206-233 (405)
306 3kl4_A SRP54, signal recogniti 20.9 3.7E+02 0.013 22.5 10.3 46 117-162 144-192 (433)
307 3rqi_A Response regulator prot 20.9 2.2E+02 0.0074 19.8 5.9 63 119-189 25-88 (184)
308 1dbq_A Purine repressor; trans 20.8 2.6E+02 0.0089 20.7 9.3 69 113-188 25-95 (289)
309 2ioy_A Periplasmic sugar-bindi 20.8 2.7E+02 0.0091 20.8 8.8 70 113-188 19-90 (283)
310 1p3y_1 MRSD protein; flavoprot 20.6 1.2E+02 0.0039 22.5 4.1 34 26-72 8-41 (194)
311 4e0q_A COP9 signalosome comple 20.5 1.6E+02 0.0055 20.5 4.7 53 137-189 71-123 (141)
312 3kjx_A Transcriptional regulat 20.4 3E+02 0.01 21.2 9.1 66 113-186 86-153 (344)
313 4a17_F RPL7A, 60S ribosomal pr 20.3 3.1E+02 0.01 21.4 6.6 72 111-188 102-175 (255)
314 2m1z_A LMO0427 protein; homolo 20.2 43 0.0015 22.5 1.5 42 117-160 25-68 (106)
315 2ark_A Flavodoxin; FMN, struct 20.2 2.4E+02 0.0081 20.0 6.1 42 113-160 21-63 (188)
316 3lua_A Response regulator rece 20.2 1.8E+02 0.0063 18.8 4.9 64 119-189 22-90 (140)
317 1k77_A EC1530, hypothetical pr 20.2 2.6E+02 0.009 20.5 7.7 82 38-151 82-171 (260)
318 1xhf_A DYE resistance, aerobic 20.1 1.7E+02 0.0058 18.3 8.4 62 119-188 21-82 (123)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=2.4e-26 Score=169.32 Aligned_cols=139 Identities=20% Similarity=0.307 Sum_probs=122.8
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
++||||+|+|+.+..++++|+.+|+. .+++|+++||.++....... .........+..
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~------------~~a~l~ll~v~~~~~~~~~~----------~~~~~~~~~~~~ 63 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR------------HQANLTALYVVDDSAYHTPA----------LDPVLSELLDAE 63 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH------------HTCEEEEEEEEECCCCCCGG----------GHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEecCccccccc----------cccccHHHHHHH
Confidence 89999999999999999999999999 89999999999875432111 011345556677
Q ss_pred HHHHHHHHHHHHHHHhhcCC-ceEEEEecCChHHHHHH-HHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 107 EENSAALLSRALQICKDKNV-KAETLVLTGDPKDMICQ-AAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi-~~~~~v~~g~~~~~I~~-~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
.+..++.++++.+.+.+.|+ ++++.+..|++.+.|++ +|++.++||||||+++++.+.++++||++++++++++||||
T Consensus 64 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVl 143 (146)
T 3s3t_A 64 AAHAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVI 143 (146)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEE
Confidence 78888899999999999999 99999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
+||
T Consensus 144 vV~ 146 (146)
T 3s3t_A 144 VIR 146 (146)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.95 E-value=4.1e-26 Score=171.14 Aligned_cols=152 Identities=24% Similarity=0.313 Sum_probs=121.4
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCC-----CCccccCCCCCCccccCchhH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPF-----QHFVFPAGPGGAAFYATSSVE 99 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~-----~~~~~~~~~~~~~~~~~~~~~ 99 (197)
.+++||||+|+|+.+..|+++|+.+|+. .+++|+++||.++. ....+.....+ .........
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 70 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTL------------KAEEVILLHVIDEREIKKRDIFSLLLGVAG-LNKSVEEFE 70 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCS------------SCCEEEEEEEEEGGGTC------------------CHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhh------------cCCeEEEEEEecCccccccccccccccccc-cccchhhhH
Confidence 3589999999999999999999999999 89999999998763 10001000000 000000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC
Q 044973 100 QSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV 179 (197)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~ 179 (197)
....+...+..++.++++.+.+...|+++++++..|++.+.|+++|++.++||||||+++++.+.++++||++++|++++
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~ 150 (162)
T 1mjh_A 71 NELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhC
Confidence 34455666777888999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEECCC
Q 044973 180 QCPIIIVKPP 189 (197)
Q Consensus 180 ~~pVlvv~~~ 189 (197)
+||||+||+.
T Consensus 151 ~~pVlvv~~~ 160 (162)
T 1mjh_A 151 NKPVLVVKRK 160 (162)
T ss_dssp CSCEEEECCC
T ss_pred CCCEEEEeCC
Confidence 9999999875
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=9.5e-26 Score=170.52 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCc-hhHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATS-SVEQSIR 103 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (197)
.+++||||+|+++.+..++++|+.+|+. .+++|+++||.++........... ..+... .......
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 69 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKM------------EVGEVILLHVIDEGTLEELMDGYS--FFYDNAEIELKDIK 69 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCS------------CCSEEEEEEEEETTGGGCCC--------------CCTTSH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEecCccccccccccc--cccccccccHHHHH
Confidence 4689999999999999999999999999 899999999987643211100000 000000 0001223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEE--EEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAET--LVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~--~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
+...+..++.++++.+.+...|+++++ .+..|++.+.|+++|++.++||||||+++++.+.++++||++++|+++++|
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~ 149 (170)
T 2dum_A 70 EKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKK 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCC
Confidence 445566677888888888888999988 888999999999999999999999999999999999999999999999999
Q ss_pred CEEEECCCCCCC
Q 044973 182 PIIIVKPPPKQH 193 (197)
Q Consensus 182 pVlvv~~~~~~~ 193 (197)
||||||+.+...
T Consensus 150 PVlvv~~~~~~~ 161 (170)
T 2dum_A 150 PVLIIKEVDENE 161 (170)
T ss_dssp CEEEECCCCCC-
T ss_pred CEEEEccCCccc
Confidence 999999876554
No 4
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.94 E-value=2.5e-25 Score=162.50 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=117.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHh-ccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNL-FGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la-~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
|++||||+|+|+.+..++++|..+| +. .+++|+++||.++....... ........+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~------------~~a~l~ll~v~~~~~~~~~~-----------~~~~~~~~~ 57 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKD------------ADCTLTLIHVKPEFMLYGEA-----------VLAAYDEIE 57 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTC------------TTEEEEEEEEECCCCCCHHH-----------HHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccC------------CCCEEEEEEEecCCCccccc-----------ccCcHHHHH
Confidence 4799999999999999999999999 88 89999999999875422110 011233445
Q ss_pred HHH-HHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 105 AQE-ENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 105 ~~~-~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
... +..++.++++.+.+...|+++++.+..|++.+.|+++++ ++||||||+++++.+.+++ ||++++++++++|||
T Consensus 58 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pV 134 (138)
T 3idf_A 58 MKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPV 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCE
Confidence 555 778889999999999999999999999999999999999 9999999999999999988 999999999999999
Q ss_pred EEEC
Q 044973 184 IIVK 187 (197)
Q Consensus 184 lvv~ 187 (197)
|+||
T Consensus 135 lvv~ 138 (138)
T 3idf_A 135 LIVK 138 (138)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=4.8e-26 Score=167.68 Aligned_cols=142 Identities=22% Similarity=0.254 Sum_probs=118.2
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCC-ccccCCCCCCccccCchhHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQH-FVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
|++||||+|+|+.+..++++|+.+|+. .+++|+++||.++... ........ ....+...+
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~~-------~~~~~~~~~ 62 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQL------------TGAELYILCVFKHHSLLEASLSMAR-------PEQLDIPDD 62 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHH------------HCCEEEEEEEECCHHHHHHTBSSCC-------CGGGCCCTT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEecCcccccccccccC-------hhhhhhHHH
Confidence 389999999999999999999999999 8999999999987531 11111000 111112234
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCce---EEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKA---ETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~---~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
...+..++.++++.+.+...|+++ ++.+..|++.+.|+++|++.++||||||+++++.+.++++||++++++++++|
T Consensus 63 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~ 142 (147)
T 3hgm_A 63 ALKDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHC 142 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCC
Confidence 556677788888899999889888 99999999999999999999999999999999999999999999999999999
Q ss_pred CEEEE
Q 044973 182 PIIIV 186 (197)
Q Consensus 182 pVlvv 186 (197)
|||+|
T Consensus 143 pVlvV 147 (147)
T 3hgm_A 143 PVLVV 147 (147)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99986
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=4.3e-25 Score=164.70 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=118.1
Q ss_pred CCEEEEEeC--CChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 26 EMKVMVALD--ESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 26 ~~~ILv~~d--~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
+++||||+| +|+.+..++++|+.+|+. .+++|+++||.++.....+. .......
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~~------------~~~~~~~ 70 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD------------YDVPLGICSVLESEDINIFD------------SLTPSKI 70 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH------------HTCCEEEEEEECCCCTTCCC------------SSHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEEeCCCccccc------------cCCHHHH
Confidence 599999999 999999999999999999 89999999999875422111 1223455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-ceEEEEec-CChHHHHHHH-HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC
Q 044973 104 KAQEENSAALLSRALQICKDKNV-KAETLVLT-GDPKDMICQA-AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi-~~~~~v~~-g~~~~~I~~~-a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~ 180 (197)
+...+..++.++++.+.+.+.|+ .+++.+.. |++.++|+++ |++.++||||||+++++.+. .++||++++++++++
T Consensus 71 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~ 149 (156)
T 3fg9_A 71 QAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAP 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCC
Confidence 66677788889999999988899 59999999 9999999999 99999999999999998887 589999999999999
Q ss_pred CCEEEEC
Q 044973 181 CPIIIVK 187 (197)
Q Consensus 181 ~pVlvv~ 187 (197)
||||+||
T Consensus 150 ~PVlvV~ 156 (156)
T 3fg9_A 150 ISVIVVR 156 (156)
T ss_dssp SEEEEEC
T ss_pred CCEEEeC
Confidence 9999997
No 7
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.93 E-value=3.5e-25 Score=163.83 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=100.9
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++||||+|+|+.+..++++|+.+|+. .+++|+++||.++........... ......+ ..+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~--~~~~~~~----~~~~ 67 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQ------------IGARLSLIHVLDNIPMPDTPYGTA--IPLDTET----TYDA 67 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHH------------HTCEEEEEEEEC--------CTTC--CCSSSCC----CHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh------------cCCEEEEEEEEcCccccccccccc--cCcCHHH----HHHH
Confidence 599999999999999999999999999 899999999998754210000000 0001111 2233
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc-eEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 106 QEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~-~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+.+++.++++.+.+ |+. ++..+..|++.+.|+++|++.++||||||+++++.+. +++||++++++++++||||
T Consensus 68 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVl 143 (150)
T 3tnj_A 68 MLDVEKQKLSQIGNTL---GIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVL 143 (150)
T ss_dssp HHHHHHHHHHHHHHHH---TCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHHHc---CCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEE
Confidence 3444555555554433 666 5788889999999999999999999999999999888 9999999999999999999
Q ss_pred EECCCC
Q 044973 185 IVKPPP 190 (197)
Q Consensus 185 vv~~~~ 190 (197)
+||++.
T Consensus 144 vv~~~~ 149 (150)
T 3tnj_A 144 AVRLRD 149 (150)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999863
No 8
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.92 E-value=1.8e-24 Score=164.38 Aligned_cols=153 Identities=31% Similarity=0.584 Sum_probs=109.4
Q ss_pred CCEEEEEeCCCh---------hhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCc
Q 044973 26 EMKVMVALDESG---------ESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATS 96 (197)
Q Consensus 26 ~~~ILv~~d~s~---------~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~ 96 (197)
+++||||+|+|+ .+..++++|+.++... ...+++|+++||.++.......... .+...
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~---------~~~~a~l~ll~v~~~~~~~~~~~~~----~~~~~ 71 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS---------NTSDFKILLLHVQVVDEDGFDDVDS----IYASP 71 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTT---------CTTSEEEEEEEEEC----------C----CCCSH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcc---------cCCCCEEEEEEEeeccccccccccc----ccCCH
Confidence 579999999999 9999999999987440 0037899999998754211110000 01112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 97 SVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
...+.+.+...+..++.++++.+.+...|+++++++..|++.+.|+++|++.++||||||+++++.+.++++||++++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl 151 (175)
T 2gm3_A 72 EDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCV 151 (175)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHH
Confidence 22233333445566778888888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEECCCCC
Q 044973 177 HHVQCPIIIVKPPPK 191 (197)
Q Consensus 177 ~~~~~pVlvv~~~~~ 191 (197)
++++||||+||+...
T Consensus 152 ~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 152 KHAECPVMTIKRNAD 166 (175)
T ss_dssp HHCSSCEEEEECCGG
T ss_pred hCCCCCEEEEcCCcC
Confidence 999999999997644
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=2.1e-24 Score=161.63 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=113.9
Q ss_pred hhccCCCCEEEEEeCC-ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchh
Q 044973 20 EMMGKNEMKVMVALDE-SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSV 98 (197)
Q Consensus 20 ~~m~~~~~~ILv~~d~-s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~ 98 (197)
.||+ ++||||+|+ |+.+..++++|+.+|+. .+++|+++||.++... .
T Consensus 21 ~mm~---~~ILv~vD~~s~~s~~al~~A~~la~~------------~~a~l~llhV~~~~~~-------~---------- 68 (155)
T 3dlo_A 21 GMIY---MPIVVAVDKKSDRAERVLRFAAEEARL------------RGVPVYVVHSLPGGGR-------T---------- 68 (155)
T ss_dssp -CCC---CCEEEECCSSSHHHHHHHHHHHHHHHH------------HTCCEEEEEEECCSTT-------S----------
T ss_pred cccc---CeEEEEECCCCHHHHHHHHHHHHHHHh------------cCCEEEEEEEEcCCCc-------c----------
Confidence 4555 999999999 99999999999999999 8899999999986421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEE--EecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 99 EQSIRKAQEENSAALLSRALQICKDKNVKAETL--VLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~--v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.+...+..++.++++.+.+.+.|+.++.. +..|++.++|+++|++.++||||||+++++.+.++++||++++++
T Consensus 69 ----~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl 144 (155)
T 3dlo_A 69 ----KDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVI 144 (155)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHH
Confidence 13344567778888888888888877754 556899999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEC
Q 044973 177 HHVQCPIIIVK 187 (197)
Q Consensus 177 ~~~~~pVlvv~ 187 (197)
++++||||+|+
T Consensus 145 ~~a~~PVLvVr 155 (155)
T 3dlo_A 145 LKANKPVICIK 155 (155)
T ss_dssp HHCSSCEEEEC
T ss_pred HhCCCCEEEeC
Confidence 99999999996
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.92 E-value=1.8e-24 Score=158.02 Aligned_cols=135 Identities=27% Similarity=0.433 Sum_probs=107.1
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++||||+|+|+.+..++++|..+|+. .+++|+++||.++... .+. .. ..+...+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~-~~~-~~----------~~~~~~~~ 57 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEA------------HGARLIVVHAYEPVPD-YLG-EP----------FFEEALRR 57 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHH------------HTCEEEEEEEECC--------------------------CH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh------------cCCEEEEEEEecCCCc-ccc-cc----------chHHHHHH
Confidence 489999999999999999999999999 8999999999985321 010 00 00112233
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-ceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 106 QEENSAALLSRALQICKDKNV-KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi-~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+..++.++++.+. .|+ ++++.+..|++.+.|+++|++.++||||||+++++.+.++++||++++++++++||||
T Consensus 58 ~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVl 134 (137)
T 2z08_A 58 RLERAEGVLEEARAL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVL 134 (137)
T ss_dssp HHHHHHHHHHHHHHH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEE
Confidence 344555556555443 578 8888888999999999999999999999999999999999999999999999999999
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
+||
T Consensus 135 vv~ 137 (137)
T 2z08_A 135 LVR 137 (137)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.92 E-value=1.6e-24 Score=163.55 Aligned_cols=146 Identities=23% Similarity=0.232 Sum_probs=112.9
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEE--EeeCCCCCccccCCCCCCccccCchhH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLV--HVQQPFQHFVFPAGPGGAAFYATSSVE 99 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv--~V~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (197)
....+++||||+|+|+.+..|+++|+.+|+ . +++|+++ ||.++.... ... .. ..
T Consensus 13 ~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~------------~a~l~ll~a~v~~~~~~~-~~~-~~---------~~ 68 (163)
T 1tq8_A 13 SLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A------------DAKLIIASAYLPQHEDAR-AAD-IL---------KD 68 (163)
T ss_dssp CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-T------------TSEEEEEEECCC------------------------
T ss_pred ccccCCEEEEEcCCCHHHHHHHHHHHHHhC-C------------CCEEEEEEeeeccCcccc-ccc-cc---------cc
Confidence 344568999999999999999999999998 5 4899999 887654210 000 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc-eEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 100 QSIRKAQEENSAALLSRALQICKDKNVK-AETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~gi~-~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
..+.+...+..++.++++.+.+...|++ +++.+..|++.++|+++|++.++||||||+++++.+.++++||++++|+++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~ 148 (163)
T 1tq8_A 69 ESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRR 148 (163)
T ss_dssp -------CCTHHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHh
Confidence 1222334455677888888888888998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEECCCCC
Q 044973 179 VQCPIIIVKPPPK 191 (197)
Q Consensus 179 ~~~pVlvv~~~~~ 191 (197)
++||||+||++..
T Consensus 149 a~~PVlvV~~~~~ 161 (163)
T 1tq8_A 149 AKVDVLIVHTTEG 161 (163)
T ss_dssp TTCEEEEECCC--
T ss_pred CCCCEEEEeCCCC
Confidence 9999999997644
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.91 E-value=2.7e-24 Score=157.70 Aligned_cols=137 Identities=19% Similarity=0.239 Sum_probs=105.4
Q ss_pred CEEEEEeCCChh--hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 27 MKVMVALDESGE--SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 27 ~~ILv~~d~s~~--s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
++||||+|+|+. +..++++|+.+|+. .+++|+++||.++........... ....+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~-----------~~~~~ 58 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI------------DDAEVHFLTVIPSLPYYASLGMAY-----------TAELP 58 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH------------HTCEEEEEEEECC---------------------------
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh------------cCCeEEEEEEecCCcccccccccc-----------cchhh
Confidence 799999999999 99999999999999 899999999998754221110000 00011
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 105 AQEENSAALLSRALQICKDKN---VKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~g---i~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
...+..++.++.+.+.+++.+ +.+++.+..|++.+.|+++|++.++||||||+++ +.+.++++||++++++++++|
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~ 137 (143)
T 3fdx_A 59 GMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAEC 137 (143)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCC
Confidence 223334445555666666654 4678889999999999999999999999999995 788889999999999999999
Q ss_pred CEEEEC
Q 044973 182 PIIIVK 187 (197)
Q Consensus 182 pVlvv~ 187 (197)
|||+||
T Consensus 138 pVlvv~ 143 (143)
T 3fdx_A 138 SVLVVR 143 (143)
T ss_dssp EEEEEC
T ss_pred CEEEeC
Confidence 999997
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=4.4e-23 Score=170.11 Aligned_cols=146 Identities=13% Similarity=0.155 Sum_probs=122.3
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++||||+|+|+.+..++++|+.+|+. .+++|+++||.++...... . .......+...+.
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~------------~~a~l~ll~v~~~~~~~~~-~-------~~~~~~~~~~~~~ 66 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQR------------NGGRIKAFLPVYDLSYDMT-T-------LLSPDERNAMRKG 66 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHH------------HCCEEEEEEEECCGGGGCT-T-------TSCHHHHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHH------------cCCeEEEEEEecccchhhc-c-------ccChhhHHHHHHH
Confidence 699999999999999999999999999 8899999999875332111 0 1112334455556
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEe-cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVL-TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~-~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+.+++.++++...+...|+++++.+. .|++.+.|++++++.++||||||+++.+.+.++++||++++++++++||||
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVl 146 (319)
T 3olq_A 67 VINQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVW 146 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEE
Confidence 6677788888888888888999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCC
Q 044973 185 IVKPPPK 191 (197)
Q Consensus 185 vv~~~~~ 191 (197)
+||+...
T Consensus 147 vv~~~~~ 153 (319)
T 3olq_A 147 MVKDKEW 153 (319)
T ss_dssp EEESSCC
T ss_pred EecCccc
Confidence 9997653
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=1e-22 Score=166.47 Aligned_cols=146 Identities=24% Similarity=0.277 Sum_probs=121.7
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQS 101 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
|.+.+++||||+|+|+.+..++++|+.+|+. .+++|+++||.++......... .....
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~------------~~a~l~ll~v~~~~~~~~~~~~----------~~~~~ 75 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKV------------GVEEIGVLFVINLTKLSTVSGG----------IDIDH 75 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHT------------TCCEEEEECCEECTTC-----C----------CCTTH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhh------------cCCEEEEEEEecCccccccccc----------ccHHH
Confidence 3445799999999999999999999999999 8999999999987543211111 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEE-EEe-cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC
Q 044973 102 IRKAQEENSAALLSRALQICKDKNVKAET-LVL-TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV 179 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~gi~~~~-~v~-~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~ 179 (197)
..+...+..++.++++.+.+...|+++++ .+. .|++.+.| ++++.++||||||+++.+.+.++++||+++++++++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~ 153 (294)
T 3loq_A 76 YIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDS 153 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcC
Confidence 44556677788888999999889999998 777 89999999 999999999999999999898999999999999999
Q ss_pred CCCEEEECCCCC
Q 044973 180 QCPIIIVKPPPK 191 (197)
Q Consensus 180 ~~pVlvv~~~~~ 191 (197)
+||||+||+...
T Consensus 154 ~~PVlvv~~~~~ 165 (294)
T 3loq_A 154 KVPVYIFKHDMV 165 (294)
T ss_dssp SSCEEEECCCTT
T ss_pred CCCEEEecCccc
Confidence 999999998753
No 15
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.88 E-value=9.1e-23 Score=149.29 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=103.1
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+++||||+|+|+.+..++++|..+|+. .+++|+++||.++.... ++. .. ........+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~-~~~-~~-------~~~~~~~~~~ 60 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKR------------HDAKLSIIHVDVNFSDL-YTG-LI-------DVNMSSMQDR 60 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHH------------HTCEEEEEEEEECCGGG-CCC-CE-------EHHHHHHTTC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHh------------cCCEEEEEEEecCchhh-hcc-cc-------ccchHHHHHH
Confidence 489999999999999999999999999 88999999998542211 100 00 0111111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCce-EEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 106 QEENSAALLSRALQICKDKNVKA-ETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~-~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
..+..++.++++. ++.|+++ +..+..|++.+.|+++|++.++||||||++ ++.+.+ +||++++++++++||||
T Consensus 61 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVl 134 (141)
T 1jmv_A 61 ISTETQKALLDLA---ESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDML 134 (141)
T ss_dssp CCCHHHHHHHHHH---HHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHH---HHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEE
Confidence 2233444444443 3457776 677788999999999999999999999999 887776 48999999999999999
Q ss_pred EECCCC
Q 044973 185 IVKPPP 190 (197)
Q Consensus 185 vv~~~~ 190 (197)
+||+..
T Consensus 135 vv~~~~ 140 (141)
T 1jmv_A 135 VVPLRD 140 (141)
T ss_dssp EEECCC
T ss_pred EeeCCC
Confidence 999753
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=2.3e-21 Score=159.66 Aligned_cols=143 Identities=22% Similarity=0.373 Sum_probs=116.7
Q ss_pred CCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 24 KNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 24 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
..+++||||+|+|+.+..++++|+.+|+. .+++|+++||.++.. ..++.... . ....
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~------------~~a~l~ll~v~~~~~-~~~~~~~~------~----~~~~ 73 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAEL------------RKIPLTLVHAVSPEV-ATWLEVPL------P----PGVL 73 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHH------------HTCCEEEEEECCCCC-CCTTCCCC------C----HHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHh------------cCCcEEEEEEecCcc-cccccCCC------C----chhh
Confidence 45689999999999999999999999999 889999999987432 11111110 1 1233
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----CCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 104 KAQEENSAALLSRALQICKDK-----NVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~-----gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
+...+..++.++++.+.+... |+++++.+..|++.+.|+++++ ++||||||+++.+.+.++++||++++|+++
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~ 151 (309)
T 3cis_A 74 RWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRH 151 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHh
Confidence 444556667777777777765 8999999999999999999997 899999999999999999999999999999
Q ss_pred CCCCEEEECCCCC
Q 044973 179 VQCPIIIVKPPPK 191 (197)
Q Consensus 179 ~~~pVlvv~~~~~ 191 (197)
++||||+||+..+
T Consensus 152 ~~~PVlvv~~~~~ 164 (309)
T 3cis_A 152 AHCPVVIIHDEDS 164 (309)
T ss_dssp CSSCEEEECTTCC
T ss_pred CCCCEEEEcCCcc
Confidence 9999999997654
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=5.9e-22 Score=159.73 Aligned_cols=148 Identities=22% Similarity=0.178 Sum_probs=116.5
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchh---HHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSV---EQSIR 103 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 103 (197)
|+||||+|+|+.+..++++|+.+|+. .+++|+++||.++........... .....+. .+...
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~------------~~a~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 65 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYK------------LSAPLTVLFVVDTRLARIPELLDF---GALTVPVPVLRTELE 65 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHH------------HTCCEEEEEEEEHHHHTHHHHC----------CHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHH------------hCCcEEEEEEeccCCcccccccCc---hHHHHHHHHHHHHHH
Confidence 57999999999999999999999999 889999999987532110000000 0000011 11113
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC-cccccccccHHHHHHhhCCCC
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG-KIKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~-~~~~~~~gs~~~~il~~~~~p 182 (197)
+...+..++.++++.+.+...|+++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++||
T Consensus 66 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~P 143 (268)
T 3ab8_A 66 RALALRGEAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVP 143 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCC
Confidence 44556677888899888988899999999999999999999 679999999999998 888899999999999999999
Q ss_pred EEEECCCCC
Q 044973 183 IIIVKPPPK 191 (197)
Q Consensus 183 Vlvv~~~~~ 191 (197)
||+||+...
T Consensus 144 Vlvv~~~~~ 152 (268)
T 3ab8_A 144 VLLAPGEPV 152 (268)
T ss_dssp EEEECSSCC
T ss_pred EEEECCCCC
Confidence 999997654
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.86 E-value=7.7e-21 Score=155.16 Aligned_cols=137 Identities=12% Similarity=0.166 Sum_probs=107.5
Q ss_pred CCCEEEEEeCCChh-------hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCch
Q 044973 25 NEMKVMVALDESGE-------SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSS 97 (197)
Q Consensus 25 ~~~~ILv~~d~s~~-------s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~ 97 (197)
.+++||||+|+|+. +..++++|..+|+. .+++|+++||.++...... . +.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~----~-------~~ 189 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL------------AKATLHVISAHPSPMLSSA----D-------PT 189 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------------TTCEEEEEEEEC--------------------C
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH------------cCCeEEEEEEecCcccccc----C-------ch
Confidence 46899999999998 99999999999999 8999999999987542111 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 98 VEQSIRKAQEENSAALLSRALQICKDKNV-KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~gi-~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
. ...+...+..++.++++. ++.|+ .++..+..|++.+.|+++|++.++||||||+++++.+.++++||++++++
T Consensus 190 ~--~~~~~~~~~~~~~l~~~~---~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl 264 (290)
T 3mt0_A 190 F--QLSETIEARYREACRTFQ---AEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVL 264 (290)
T ss_dssp H--HHHHHHHHHHHHHHHHHH---HHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHH
T ss_pred h--HHHHHHHHHHHHHHHHHH---HHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHH
Confidence 1 222333344444444433 34477 36778888999999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEECCC
Q 044973 177 HHVQCPIIIVKPP 189 (197)
Q Consensus 177 ~~~~~pVlvv~~~ 189 (197)
++++||||+||+.
T Consensus 265 ~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 265 DTLESDVLVLKPD 277 (290)
T ss_dssp TTCSSEEEEECCH
T ss_pred hcCCCCEEEECCC
Confidence 9999999999975
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.86 E-value=3.5e-21 Score=140.40 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=101.2
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee-CC-CCCcccc--CCCCCCccccCchhHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ-QP-FQHFVFP--AGPGGAAFYATSSVEQS 101 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~ 101 (197)
+++||||+|+|+.+..++++|..+|+. .+++|+++||. +. +....+. ..+. . ..
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~~~~~~~~~~-------~---~~ 61 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEK------------LGAELDILAVLEDVYNLERANVTFGLPF-------P---PE 61 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTT------------TCCEEEEEEECHHHHHHHHHHHHHCCCC-------C---TH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHH------------cCCeEEEEEEecccccccccccccCCCC-------C---hH
Confidence 479999999999999999999999999 89999999998 63 1000000 0000 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC
Q 044973 102 IRKAQEENSAALLSRALQI--CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV 179 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~--~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~ 179 (197)
..+...+..++.++++ .. +...| ++++.+..|++.+.|+++|++.++||||||++++ |+++++++++
T Consensus 62 ~~~~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a 130 (138)
T 1q77_A 62 IKEESKKRIERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGL 130 (138)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhC
Confidence 3344455566677777 66 35567 8888888999999999999999999999999875 8999999999
Q ss_pred CCCEEEEC
Q 044973 180 QCPIIIVK 187 (197)
Q Consensus 180 ~~pVlvv~ 187 (197)
+||||+||
T Consensus 131 ~~PVlvv~ 138 (138)
T 1q77_A 131 NLASLIVK 138 (138)
T ss_dssp SSEEEECC
T ss_pred CCceEeeC
Confidence 99999986
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.86 E-value=2.7e-21 Score=157.88 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=108.4
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
.+++||||+|+|+.+..++++|+.+|+. .+++|+++||.++
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~------------~~a~l~ll~v~~~--------------------------- 46 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGV------------TQSHLHLLVCEKR--------------------------- 46 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHH------------HCCEEEEEEECSS---------------------------
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHh------------cCCeEEEEEeeCc---------------------------
Confidence 4699999999999999999999999999 8899999999873
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEe-cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVL-TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~-~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
+..++.++++.+.+...|+++++.+. .|++.+.|++++++.++||||||+++.+.+.++++||++++++++++|||
T Consensus 47 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PV 123 (290)
T 3mt0_A 47 ---RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPV 123 (290)
T ss_dssp ---SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCE
T ss_pred ---HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCE
Confidence 11123455555666678999999888 47899999999999999999999999998999999999999999999999
Q ss_pred EEECCCC
Q 044973 184 IIVKPPP 190 (197)
Q Consensus 184 lvv~~~~ 190 (197)
|+||+..
T Consensus 124 lvv~~~~ 130 (290)
T 3mt0_A 124 LMTKTAR 130 (290)
T ss_dssp EEECCCS
T ss_pred EEecCCC
Confidence 9999543
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.85 E-value=1.7e-20 Score=153.34 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=112.6
Q ss_pred CCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 24 KNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 24 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
..+++||||+|+++.+..++++|..+|+. .+++|+++||.++..
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~------------~~~~l~ll~v~~~~~------------------------ 211 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKK------------TGGELHIIHVSEDGD------------------------ 211 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHH------------HTCEEEEEEECSSSC------------------------
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhh------------cCCEEEEEEEccCch------------------------
Confidence 34589999999999999999999999999 889999999988631
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
.++.++++.+.+.+.|++++..+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||
T Consensus 212 ------~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pv 285 (294)
T 3loq_A 212 ------KTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPV 285 (294)
T ss_dssp ------CHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCE
T ss_pred ------HHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCE
Confidence 23355566677777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCC
Q 044973 184 IIVKPPPK 191 (197)
Q Consensus 184 lvv~~~~~ 191 (197)
|+||++.+
T Consensus 286 Lvv~~~~~ 293 (294)
T 3loq_A 286 FVCKRGDD 293 (294)
T ss_dssp EEECSCTT
T ss_pred EEECCCCC
Confidence 99998653
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.85 E-value=2.2e-20 Score=153.80 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
.+++||||+|+++.+..++++|..+|+. .+++|+++||.++...... . ....+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~------------~~a~l~ll~v~~~~~~~~~----~-------~~~~~---- 222 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASR------------RNVDLVALHAWSDVDVSEW----P-------GIDWP---- 222 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHH------------TTCCEEEEEESCSSCCTTC----S-------SCCHH----
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHh------------cCCEEEEEEEeecccccCC----C-------cccHH----
Confidence 4689999999999999999999999999 8999999999876432100 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCC
Q 044973 105 AQEENSAALLSRALQICKD--KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~--~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~p 182 (197)
...+..++.++++...+.. .|+.++..+..|++.+.|+++++ ++||||||+++++.+.++++||++++|+++++||
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~p 300 (309)
T 3cis_A 223 ATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTP 300 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCC
Confidence 2233444455555554443 47899999999999999999998 9999999999999999999999999999999999
Q ss_pred EEEECCC
Q 044973 183 IIIVKPP 189 (197)
Q Consensus 183 Vlvv~~~ 189 (197)
||+||+.
T Consensus 301 Vlvv~~~ 307 (309)
T 3cis_A 301 VIVARES 307 (309)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9999974
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.85 E-value=2.1e-20 Score=154.04 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCh-------hhHHHHHHHHHHhccccCCCCCCCCCCC--CCEEEEEEeeCCCCCccccCCCCCCccccC
Q 044973 25 NEMKVMVALDESG-------ESFYALKWALDNLFGITGAVTPGTSDRG--AGTVTLVHVQQPFQHFVFPAGPGGAAFYAT 95 (197)
Q Consensus 25 ~~~~ILv~~d~s~-------~s~~al~~a~~la~~~~~~~~~~~~~~~--~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~ 95 (197)
.+++||||+|+++ .+..++++|..+|+. . +++|+++||.++.........+
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~------------~~~~a~l~ll~v~~~~~~~~~~~~~-------- 214 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHR------------IQKDPDVHLLSAYPVAPINIAIELP-------- 214 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHH------------HCSSCCEEEEEEECCCSCSCCTTCT--------
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHh------------ccCCCeEEEEEeecCcchhhhccCC--------
Confidence 4689999999998 579999999999999 7 8999999999876533211111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH
Q 044973 96 SSVEQSIRKAQEENSAALLSRALQICKDKNV-KAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174 (197)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi-~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~ 174 (197)
........++..+..++.++.+ +++.|+ .++.++..|++.+.|++++++.++||||||+++++.+.++++||++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~ 291 (319)
T 3olq_A 215 DFDPNLYNNALRGQHLIAMKEL---RQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQ 291 (319)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH---HHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHH
Confidence 1122333444444555555444 344565 466778889999999999999999999999999999999999999999
Q ss_pred HHhhCCCCEEEECCCCCC
Q 044973 175 CAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 175 il~~~~~pVlvv~~~~~~ 192 (197)
|+++++||||+||+....
T Consensus 292 vl~~~~~pVLvv~~~~~~ 309 (319)
T 3olq_A 292 LIDHIKCDLLAIKPDGFT 309 (319)
T ss_dssp HHTTCCSEEEEECCTTCC
T ss_pred HHhhCCCCEEEECCCCCC
Confidence 999999999999987543
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.78 E-value=2.5e-18 Score=138.38 Aligned_cols=116 Identities=23% Similarity=0.284 Sum_probs=101.7
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
.+++||||+|+++.+..++++|..+|.. .+++|+++||.++.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~------------~~a~l~ll~v~~~~-------------------------- 194 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARA------------LGLGVRVVSVHEDP-------------------------- 194 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHH------------HTCCEEEEEECSSH--------------------------
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhc------------CCCEEEEEEEcCcH--------------------------
Confidence 4689999999999999999999999999 78999999998751
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
+..++.++++...+.+.|+++++.+..|++.+.|++++++. ||||||+ .+.++++||++++++++++||||
T Consensus 195 ---~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvl 265 (268)
T 3ab8_A 195 ---ARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVL 265 (268)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEE
T ss_pred ---HHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEE
Confidence 12334566677777778999999888999999999999976 9999999 56778999999999999999999
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
++|
T Consensus 266 vv~ 268 (268)
T 3ab8_A 266 TAR 268 (268)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.06 E-value=0.044 Score=39.17 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=92.5
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCC-CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGA-GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~-~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.+|||-+.-.-.+....+....+... .. ..+.++--.++ ...+ .+ ...+
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~------------~~~~~f~VLVPa~~--~~a~--------~~--------e~~~ 51 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQ------------DPEARFVLLVPAVP--PPGW--------VY--------EENE 51 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHH------------CTTCEEEEEEEEEC--CCCS--------CC----------CH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcC------------CCceEEEEEecCCC--Cccc--------cc--------ChHH
Confidence 58888887766666666654666665 44 56544432222 1111 00 1234
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceE-EEEecCChHHHHHHHHHHcC--CCEEEEecCCCCcccccccccHHHHHHhhCCCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAE-TLVLTGDPKDMICQAAEQMH--MDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~-~~v~~g~~~~~I~~~a~~~~--~dliViG~~~~~~~~~~~~gs~~~~il~~~~~p 182 (197)
..+.+++.++.....++..|+.++ -.+..++|..+|.+...+.+ +|=||+-+..+ ...+||--..+++.=+ ...|
T Consensus 52 a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvP 129 (138)
T 2iel_A 52 VRRRAEEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLP 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCC
Confidence 566677888888899999999999 99999999999999999999 99999998876 4566777777887777 8999
Q ss_pred EEEE
Q 044973 183 IIIV 186 (197)
Q Consensus 183 Vlvv 186 (197)
|+=+
T Consensus 130 Vlhl 133 (138)
T 2iel_A 130 VIHV 133 (138)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9855
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.68 E-value=0.35 Score=39.31 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=65.4
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCE-EEEEEeeCCCCCccccCCCCCCccccCchhHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGT-VTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQ 100 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~-l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (197)
|....++|+|++.+..+|..++..+..+... .+.+ +.++||.....
T Consensus 20 l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------------~g~~~v~av~vd~g~r--------------------- 66 (317)
T 1wy5_A 20 IFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------------FSLKEVALAHFNHMLR--------------------- 66 (317)
T ss_dssp SCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------------TTCSEEEEEEEECCSS---------------------
T ss_pred CCCCCCEEEEEecchHHHHHHHHHHHHHHHH------------cCCCEEEEEEEECCCC---------------------
Confidence 3345579999999999999999888777665 5667 99999975421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec--------C-Ch--------HHHHHHHHHHcCCCEEEEecCC
Q 044973 101 SIRKAQEENSAALLSRALQICKDKNVKAETLVLT--------G-DP--------KDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliViG~~~ 159 (197)
.......+.+...++..|+++.+.-.. + ++ ...+.+.|++.+++.|+.|.+.
T Consensus 67 -------~~s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 67 -------ESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp -------THHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred -------cccHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 011122334555666678887664421 1 11 1245667888999999999764
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=94.60 E-value=0.26 Score=42.36 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=69.5
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQS 101 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
|....++|+|++.+..+|..++..+..+... .+.++.++||......
T Consensus 14 l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~------------~~~~v~avhvdhglrg--------------------- 60 (464)
T 3a2k_A 14 LLSEGAAVIVGVSGGPDSLALLHVFLSLRDE------------WKLQVIAAHVDHMFRG--------------------- 60 (464)
T ss_dssp SSSCSSBEEEECCSSHHHHHHHHHHHHHHHT------------TTCBCEEEEEECTTCT---------------------
T ss_pred CCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH------------cCCeEEEEEEECCCCc---------------------
Confidence 3344578999999999999999988888777 6788999999765310
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec--------C-Ch--------HHHHHHHHHHcCCCEEEEecCC
Q 044973 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLT--------G-DP--------KDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliViG~~~ 159 (197)
..+....+.+.+.|+..|+++.+.-.. + ++ ...+.++|++.+++.|++|.+.
T Consensus 61 ------~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 61 ------RESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred ------cccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 112223445667777888887765432 1 11 2455677888899999999764
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=93.28 E-value=0.7 Score=34.53 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|++++..+..- ...+.+.++++ +.+++.||.|+.....+.. -+.-.+..||+-||.
T Consensus 37 v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG--------vvAa~T~~PVIGVPv 108 (181)
T 4b4k_A 37 TMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTNLPVIGVPV 108 (181)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHTTCCSCEEEEEC
T ss_pred HHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh--------hHHhcCCCCEEEEec
Confidence 34456677788899999988765 45565666654 4678999999877654432 355588999999998
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 109 ~s~ 111 (181)
T 4b4k_A 109 QSK 111 (181)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=92.37 E-value=1.7 Score=37.38 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=78.9
Q ss_pred CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 044973 34 DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAAL 113 (197)
Q Consensus 34 d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
|..-....||..|...|.. .+..|..|+++++.... . .........+-
T Consensus 46 DLRl~DN~aL~~A~~~a~~------------~~~~v~~vfi~dp~~~~-----~---------------~~~r~~Fl~~s 93 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKE------------ANVPVVVVFCLTDEFLE-----A---------------GIRQYEFMLKG 93 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHH------------HTSCEEEEEEECTTGGG-----S---------------CHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHH------------cCCcEEEEEEeChhhhc-----c---------------CHHHHHHHHHH
Confidence 3334556788888888876 55679999999875311 0 13344555667
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
|..+.+.+++.|+++.. ..|++.+.|.+++++.+++.|+.-... ....+ .....+....+|++..+..
T Consensus 94 L~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 94 LQELEVSLSRKKIPSFF--LRGDPGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHHHHHHHHTTCCEEE--EESCHHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHHcCCcEEE--EeCCHHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcCCEEEEEeC
Confidence 77888888888887654 569999999999999999999986433 22222 1223344445888877754
No 30
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=91.99 E-value=0.9 Score=33.69 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|++++..+..- ...+.+.++++ +.+++.||.++.....+. .-+.-.+.+||+-||.
T Consensus 27 v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~~PVIgVPv 98 (173)
T 4grd_A 27 VMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTTVPVLGVPV 98 (173)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCCSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCCCCEEEEEc
Confidence 34456667778899999888765 35555555554 468899999887755443 2355588999999996
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 99 ~~~ 101 (173)
T 4grd_A 99 ASK 101 (173)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 31
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=91.93 E-value=2.8 Score=36.39 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=77.4
Q ss_pred CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 044973 34 DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAAL 113 (197)
Q Consensus 34 d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
|..-....||..|+..|.. .+..|..|+|+++.... + ..+ ........+-
T Consensus 47 DLRl~DN~AL~~A~~~a~~------------~~~pVl~vfildp~~~~--~-~~~---------------~~r~~FL~~s 96 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAA------------SASPLAVAFALFPRPFL--L-SAR---------------RRQLGFLLRG 96 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHH------------HTCCEEEEEECCCTTCG--G-GCC---------------HHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhhh------------cCCCEEEEEeccchhhc--c-CCC---------------HHHHHHHHHH
Confidence 4444566889999998887 56789999999885321 1 111 3344566667
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh--hCCCCEEEEC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH--HVQCPIIIVK 187 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~--~~~~pVlvv~ 187 (197)
|..+.+.+++.|+... +..|++.+. .+++++.+++.|+.- .......+.. ...+...+. ...+++..+.
T Consensus 97 L~dL~~~L~~lG~~L~--v~~G~p~~v-~~L~~~~~a~~V~~d-~ep~~~~r~r-D~~V~~~l~~~~~gi~~~~~~ 167 (506)
T 3umv_A 97 LRRLAADAAARHLPFF--LFTGGPAEI-PALVQRLGASTLVAD-FSPLRPVREA-LDAVVGDLRREAPGVAVHQVD 167 (506)
T ss_dssp HHHHHHHHHHTTCCEE--EESSCTTHH-HHHHHHTTCSEEEEC-CCCCHHHHHH-HHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHHHcCCceE--EEecChHHH-HHHHHhcCCCEEEec-cChhHHHHHH-HHHHHHHHhhccCCeEEEEeC
Confidence 7778888888777654 467999999 999999999999972 2221111111 222333333 4578877665
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=90.82 E-value=1.3 Score=32.67 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHH---HHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQA---AEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~---a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.++ +++.+++.||.+......+. .-+.-.+.+||+-||.
T Consensus 21 v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 92 (169)
T 3trh_A 21 TMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------GTIAAHTLKPVIGVPM 92 (169)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------HHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhcCCCCEEEeec
Confidence 44566677788899999888764 344555555 55578898888877654443 3355688999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 93 ~~ 94 (169)
T 3trh_A 93 AG 94 (169)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 33
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=90.76 E-value=1.5 Score=32.62 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...+++.|++++..+..- ...+.+.++++ +.+++.||.+......+. .-+.-.+.+||+-||.
T Consensus 27 v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 98 (174)
T 3kuu_A 27 TMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------GMLAAKTLVPVLGVPV 98 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------HHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhccCCCEEEeeC
Confidence 44556677788899999888765 45666666655 467898888877654443 3355688999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 99 ~~ 100 (174)
T 3kuu_A 99 QS 100 (174)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 34
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=90.46 E-value=1.5 Score=32.02 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.+++++...+.+|.+......+. .-+.-.+.+||+-||.
T Consensus 14 v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------gvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 14 IAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------GVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------HHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------HHHHhccCCCEEEecC
Confidence 44566677788899999988765 57788889988766688888877654443 3355688999999997
No 35
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=90.38 E-value=2.4 Score=31.22 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHH---cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQ---MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~---~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|+.++..+..- ...+.+.+++++ .+++.||.+......+. .-+.-.+.+||+-||.
T Consensus 20 v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 91 (166)
T 3oow_A 20 TMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------GMVAAKTTLPVLGVPV 91 (166)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------HHHHhccCCCEEEeec
Confidence 44566677788899999888765 456677777654 46899999877655443 3355688999999997
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 92 ~~~ 94 (166)
T 3oow_A 92 KSS 94 (166)
T ss_dssp CCT
T ss_pred CcC
Confidence 543
No 36
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=90.06 E-value=1 Score=33.41 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHH---HHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMIC---QAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~---~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+. +.+++.+++.||.++.....+. .-+.-.+.+||+-||.
T Consensus 22 v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 93 (174)
T 3lp6_A 22 VMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------GMVAAATPLPVIGVPV 93 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------HHHHhccCCCEEEeeC
Confidence 44556677788899999888764 3444444 4456678999988877654443 3355689999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 94 ~~ 95 (174)
T 3lp6_A 94 PL 95 (174)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 37
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=90.05 E-value=2.2 Score=31.22 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---Hc-CCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QM-HMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~-~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...++..|++++..+..- ...+.+.++++ +. +++.||.+......+. .-+.-.+.+||+-||
T Consensus 17 v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP 88 (159)
T 3rg8_A 17 HAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------GFVDGFVKGATIACP 88 (159)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------HHHHHHSSSCEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------HHHHhccCCCEEEee
Confidence 44566677788899999888764 45566666654 33 5899999877654443 335568999999999
Q ss_pred CCC
Q 044973 188 PPP 190 (197)
Q Consensus 188 ~~~ 190 (197)
...
T Consensus 89 ~~~ 91 (159)
T 3rg8_A 89 PPS 91 (159)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 38
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=90.03 E-value=1.8 Score=33.28 Aligned_cols=86 Identities=7% Similarity=-0.042 Sum_probs=58.5
Q ss_pred CCEEEEEeCC-----ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHH
Q 044973 26 EMKVMVALDE-----SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQ 100 (197)
Q Consensus 26 ~~~ILv~~d~-----s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (197)
+++|||-.+. .+.+..++..|.+|+.. .+.+++++.+-+...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~------------~g~~v~av~~G~~~~--------------------- 49 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANE------------LNCQLEAVVAGTGLK--------------------- 49 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHH------------HTCCEEEEEEESCCT---------------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHh------------cCCeEEEEEECCCHH---------------------
Confidence 4679998874 46789999999999998 677888887754311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec----C-C---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 101 SIRKAQEENSAALLSRALQICKDKNVKAETLVLT----G-D---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~----g-~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+.+.+...|..--..+.. + + ....|.+.+++.++|+|++|...
T Consensus 50 ---------------~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 50 ---------------EIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ---------------TTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ---------------HHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0112233346543333322 1 2 46788899999999999999754
No 39
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=90.02 E-value=1.8 Score=31.98 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHH---cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQ---MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~---~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.+++++ .+++.||.++.....+. --+.-.+.+||+-||.
T Consensus 26 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 97 (170)
T 1xmp_A 26 TMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVPV 97 (170)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeC
Confidence 44556677778899999988764 466667777654 46898888877654443 3355688999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 98 ~~ 99 (170)
T 1xmp_A 98 QS 99 (170)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 40
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=89.72 E-value=2 Score=31.55 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.++++ +.+++.||.+......+. .-+.-.+.+||+-||.
T Consensus 18 v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 89 (163)
T 3ors_A 18 IMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------GMVASLTTLPVIGVPI 89 (163)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeC
Confidence 44566677788899999888764 45666666654 457898888877654443 3355689999999997
Q ss_pred CCC
Q 044973 189 PPK 191 (197)
Q Consensus 189 ~~~ 191 (197)
...
T Consensus 90 ~~~ 92 (163)
T 3ors_A 90 ETK 92 (163)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 41
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=89.51 E-value=3.7 Score=32.49 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=53.4
Q ss_pred EEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCC--EEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHH
Q 044973 31 VALDESGESFYALKWALDNLFGITGAVTPGTSDRGAG--TVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEE 108 (197)
Q Consensus 31 v~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~--~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
++.-.++.+..|+..|.+|+.. .+. +|+++.+-++.
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~------------~g~~~~V~av~~G~~~------------------------------ 68 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKES------------SDTDVEVVVVSVGPDR------------------------------ 68 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHH------------CSSCCEEEEEEESCGG------------------------------
T ss_pred CCCccCHHHHHHHHHHHHHHHh------------cCCCceEEEEEeCchh------------------------------
Confidence 3445678899999999999887 555 88888775421
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEec----C-C---hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLT----G-D---PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~----g-~---~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.++.+.++ ...|..--.++.. + + ....|.+++++.++|+|++|....+
T Consensus 69 -~~~~lr~a----la~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 69 -VDESLRKC----LAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp -GHHHHHHH----HHTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred -HHHHHHHH----HhcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 11122222 2225543333321 1 2 3457778888889999999987654
No 42
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=89.40 E-value=1.2 Score=35.99 Aligned_cols=103 Identities=8% Similarity=0.004 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 044973 40 FYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQ 119 (197)
Q Consensus 40 ~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (197)
.-++-.|-.+... .++++.++.|++. ++..+.++..++++.+
T Consensus 179 ~LmlllAylL~~n------------W~A~I~L~~vV~d--------------------------e~a~~~a~~~l~~Lv~ 220 (294)
T 3g40_A 179 DLALLIAYKLKSN------------WKASLSFMTFAPT--------------------------AIQAQAAENFLQSLAE 220 (294)
T ss_dssp HHHHHHHHHHHHH------------HTCEEEEEEECSS--------------------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhC------------cCCeEEEEEecCC--------------------------HHHHHHHHHHHHHHHH
Confidence 3345555555555 7899999999886 5566677777877777
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCCC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPKQ 192 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~ 192 (197)
.++-. .... .+ . .+..+|+..+ -.+||+++|-.....+ ....++...+....|.++....+
T Consensus 221 ~~Ri~-a~~~-vv-~-~~F~~il~~s--~~ADL~flGl~~~~df------~~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 221 LARIP-NVKM-QV-L-RENPIKSSKL--PFASLHIFSLDPNPDL------DLARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp HHTCC-SCEE-EE-E-SSCTTTSSSC--CCCSEEEEECCSSCCH------HHHHHHHHHHTSEEEEEECCSCC
T ss_pred HhcCC-ceEE-Ee-c-CchHHHHhhC--cCCCEEEEcCCCCCcH------HHHHHHHHhcCCeEEEEecCchh
Confidence 77543 2232 23 3 4444555445 4799999998765443 35677888999999999876554
No 43
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=89.35 E-value=7.3 Score=31.31 Aligned_cols=124 Identities=10% Similarity=0.163 Sum_probs=78.8
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
=+|||+++........++++..+... ..-+++++|.+.... + ..
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~-------------~G~ltv~~i~p~~~~----------------~-------~l 64 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP-------------KGSVKLLGLAGNTDK----------------E-------NL 64 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT-------------TCEEEEEECC---CT----------------T-------CH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC-------------ceeEEEEEEccCCCc----------------c-------HH
Confidence 36999997777888889988888655 688999999755320 0 00
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEec-CChHHHHHHHHHHcC-----CCEEEEecCCCCcccccccccHHHHHHhhCC
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLT-GDPKDMICQAAEQMH-----MDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~-----~dliViG~~~~~~~~~~~~gs~~~~il~~~~ 180 (197)
.++ +..+.+.+++.|+..-+.+.. .++...+....+.++ +..|++|...... .+--+..+.. -+++..
T Consensus 65 ~~q----l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~~y~~~i~-~~~~~~ 138 (294)
T 3g40_A 65 LSQ----LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDEEIREIIR-KASMYR 138 (294)
T ss_dssp HHH----HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHHHHHHHHH-HHHHTT
T ss_pred HHH----HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhHHHHHHHH-HHHHhC
Confidence 111 255678889999987776665 478888888877654 6789999765421 1112233333 334668
Q ss_pred CCEEEECCCCCC
Q 044973 181 CPIIIVKPPPKQ 192 (197)
Q Consensus 181 ~pVlvv~~~~~~ 192 (197)
..|++++..+..
T Consensus 139 ~nVlil~~~~~~ 150 (294)
T 3g40_A 139 MGVLLFSKHPQA 150 (294)
T ss_dssp CEEEEEECCTTT
T ss_pred ceEEEEecCCcc
Confidence 999999765543
No 44
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=88.76 E-value=2.4 Score=31.70 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHH---cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQ---MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~---~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.+++++ .+++.||.+......+. --+.-.+.+||+-||.
T Consensus 36 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 107 (182)
T 1u11_A 36 TMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------GMCAAWTRLPVLGVPV 107 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------HHHHhccCCCEEEeeC
Confidence 44556677778899999888764 466667777654 56898888877654443 3355688999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 108 ~~ 109 (182)
T 1u11_A 108 ES 109 (182)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 45
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=88.17 E-value=2.3 Score=31.81 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++...++..|++++..+..- ...+.+.++++ +.+++.||.++.....+. .-+.-.+.+||+-||.
T Consensus 28 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 99 (183)
T 1o4v_A 28 VMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITHLPVIGVPV 99 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccCCCEEEeeC
Confidence 44556677778899999988764 45566666655 456898888877654433 3355689999999997
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 100 ~~ 101 (183)
T 1o4v_A 100 KT 101 (183)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 46
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=85.65 E-value=13 Score=32.34 Aligned_cols=130 Identities=8% Similarity=-0.028 Sum_probs=83.5
Q ss_pred EEEEEe--CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 28 KVMVAL--DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 28 ~ILv~~--d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.+|+=+ |..-....||..|+..+.... .+..|..|+++++...... .. ...
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~----------~~~pv~~vfi~dp~~~~~~--~~---------------~~~ 82 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAP----------GRYFVRPIFILDPGILDWM--QV---------------GAN 82 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHST----------TTEEEEEEEEECTTGGGCT--TS---------------CHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCcccc----------CCCeEEEEEEECchhhccc--CC---------------CHH
Confidence 445544 444455678888887664300 2567899999987532110 01 133
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
......+-|..+.+.+++.|+.+.. ..|++.+.|.+++++.+++.|+.-.. ...... ....-....+...++++..
T Consensus 83 r~~Fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~-~rd~~v~~~~~~~gi~~~~ 158 (543)
T 2wq7_A 83 RWRFLQQTLEDLDNQLRKLNSRLFV--VRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSV-TRDAAVQKLAKAEGVRVET 158 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEE--EESCHHHHHHHHHHHTTEEEEEEECC-CSHHHH-HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHH-HHHHHHHHHHHHcCCEEEE
Confidence 4455566777888888888887655 46999999999999999998888643 222221 2234445566667888877
Q ss_pred ECC
Q 044973 186 VKP 188 (197)
Q Consensus 186 v~~ 188 (197)
+..
T Consensus 159 ~~~ 161 (543)
T 2wq7_A 159 HCS 161 (543)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=83.56 E-value=3.6 Score=33.52 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
+.+++|++.+..+|...+..+..+... .+..+.++|+...... .+
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~------------~~~~i~vv~vDtg~~~-----------------------~e 90 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFP------------GKLPFPVMHVDTRWKF-----------------------QE 90 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTT------------SCCSSCEEEECCSCCC-----------------------HH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccc------------cCCCEEEEEEECCCCC-----------------------HH
Confidence 468999999999999999988877654 4556778888654320 00
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEec-----CC-h-------------HHHHHHHHHHcCCCEEEEecCCCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLT-----GD-P-------------KDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----g~-~-------------~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.++-..+.++..|+++...... |. . ...+.+++++.++|.++.|.+...
T Consensus 91 -------t~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~De 158 (325)
T 1zun_A 91 -------MYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDE 158 (325)
T ss_dssp -------HHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTS
T ss_pred -------HHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 1122233455567766543311 21 1 123566677789999999987643
No 48
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=82.21 E-value=9.4 Score=29.17 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=39.2
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.+++.|+++...-...-...++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 52 ~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~~I---------L~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 52 LIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFMSI---------LPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp HHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCCSC---------CCHHHHHHTTTSEEEEESS
T ss_pred HHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCceE---------eCHHHHhhccCCeEEECcc
Confidence 5567788987753222212378899999999999999865531 1233445555556665543
No 49
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=82.13 E-value=14 Score=28.99 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=50.0
Q ss_pred CChhhHHHHHHHHHHhccccCCCCCCCCCCCC-CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 044973 35 ESGESFYALKWALDNLFGITGAVTPGTSDRGA-GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAAL 113 (197)
Q Consensus 35 ~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~-~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
.++.+..|+..|.++... .+ .+++++.+-++. +++.
T Consensus 38 lnp~d~~Ale~A~~Lke~------------g~~~~V~av~~G~~~-------------------------------a~~~ 74 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK------------KLVKEVIAVSCGPAQ-------------------------------CQET 74 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT------------TSCSEEEEEEEESTT-------------------------------HHHH
T ss_pred CCHHHHHHHHHHHHHHhc------------CCCceEEEEEeCChh-------------------------------HHHH
Confidence 456788999999999765 22 388888776531 1122
Q ss_pred HHHHHHHHhhcCCceEEEEe------cC-C---hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 114 LSRALQICKDKNVKAETLVL------TG-D---PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~------~g-~---~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+.++.. .|..--.++. .+ + ....|.+++++.++|+|++|....+
T Consensus 75 lr~ala----~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 75 IRTALA----MGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp HHHHHH----HTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHHHh----cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 222222 2544333333 12 2 3457778888889999999987754
No 50
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=80.93 E-value=16 Score=27.75 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=55.3
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
+||.|-+.++..+..+|-.+..- .. ..+++.+|....+.
T Consensus 3 ~riavl~Sg~Gsnl~ali~~~~~-~~------------l~~eI~~Visn~~~---------------------------- 41 (211)
T 3p9x_A 3 KRVAIFASGSGTNAEAIIQSQKA-GQ------------LPCEVALLITDKPG---------------------------- 41 (211)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHT-TC------------CSSEEEEEEESCSS----------------------------
T ss_pred CEEEEEEeCCchHHHHHHHHHHc-CC------------CCcEEEEEEECCCC----------------------------
Confidence 58999899988887777665432 22 45677665442221
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEec--CC---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLT--GD---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~--g~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
....+.+++.|+++...-.. .+ ...++.+..++.++|++|+...+
T Consensus 42 --------a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 --------AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp --------SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred --------cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 02556777889987653222 12 14688899999999999998655
No 51
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=80.48 E-value=23 Score=30.23 Aligned_cols=127 Identities=14% Similarity=-0.030 Sum_probs=77.6
Q ss_pred EEEEEe--CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCcccc--CCCCCCccccCchhHHHHH
Q 044973 28 KVMVAL--DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFP--AGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 28 ~ILv~~--d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 103 (197)
.+|+=+ |..-....||..|+. .+..+..|+++++....... .... .
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~----------------~~~~v~~vfi~dp~~~~~~~~~~~~~--------------~ 56 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALK----------------SGLAITAVYCYDPRQFAQTHQGFAKT--------------G 56 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHH----------------TTSEEEEEEEECGGGGSBCTTSCBSS--------------C
T ss_pred cEEEEeCCCCCcchHHHHHHHHh----------------cCCCEEEEEEECchhhcccccccCCC--------------C
Confidence 444444 444445567766643 23478899999874321100 0000 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCE
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPI 183 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pV 183 (197)
........+-|..+.+.+++.|+.+.. ..|++.+.|.+++++.+++.|+.-..- ....... .......+...++++
T Consensus 57 ~~r~~Fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~ 132 (489)
T 1np7_A 57 PWRSNFLQQSVQNLAESLQKVGNKLLV--TTGLPEQVIPQIAKQINAKTIYYHREV-TQEELDV-ERNLVKQLTILGIEA 132 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEE--EESCHHHHHHHHHHHTTEEEEEEECCC-SHHHHHH-HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEE--EECCHHHHHHHHHHHcCCCEEEEeccc-CHHHHHH-HHHHHHHHHhcCCeE
Confidence 233455666777788888888887655 569999999999999999988886433 3332222 333444556667888
Q ss_pred EEECC
Q 044973 184 IIVKP 188 (197)
Q Consensus 184 lvv~~ 188 (197)
..+..
T Consensus 133 ~~~~~ 137 (489)
T 1np7_A 133 KGYWG 137 (489)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77654
No 52
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=80.10 E-value=15 Score=28.74 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=50.9
Q ss_pred eCCChhhHHHHHHHHHHhccccCCCCCCCCCCCC-CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 044973 33 LDESGESFYALKWALDNLFGITGAVTPGTSDRGA-GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSA 111 (197)
Q Consensus 33 ~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~-~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
.-.++.+..|+..|.+++.. .+ .+++++.+-++. ++
T Consensus 33 ~~lnp~d~~Ale~A~~Lke~------------g~~~~V~av~~G~~~-------------------------------a~ 69 (252)
T 1efp_B 33 MSMNPFDEIAVEEAIRLKEK------------GQAEEIIAVSIGVKQ-------------------------------AA 69 (252)
T ss_dssp EEECHHHHHHHHHHHHHHTT------------TSCSEEEEEEEESGG-------------------------------GH
T ss_pred ccCCHHHHHHHHHHHHHHhc------------CCCceEEEEEeCChh-------------------------------HH
Confidence 34577889999999999765 22 388888776431 11
Q ss_pred HHHHHHHHHHhhcCCceEEEEe------cC-C---hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 112 ALLSRALQICKDKNVKAETLVL------TG-D---PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~------~g-~---~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+.+.++.. .|..--.++. .+ + ....|.+++++.++|+|++|....+
T Consensus 70 ~~lr~ala----~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 70 ETLRTALA----MGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp HHHHHHHH----HTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHHHHHh----cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 22222222 2543333332 12 2 3457778888889999999987754
No 53
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=80.09 E-value=15 Score=30.87 Aligned_cols=94 Identities=11% Similarity=0.026 Sum_probs=61.7
Q ss_pred EEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH
Q 044973 68 TVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ 147 (197)
Q Consensus 68 ~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~ 147 (197)
.|..|+++++.... . + ........+-|..+.+.+++.|+++.. ..|++.+.|.+++++
T Consensus 28 ~v~~vfi~d~~~~~----~-~---------------~~r~~fl~~sL~~l~~~L~~~g~~l~~--~~g~~~~~l~~l~~~ 85 (420)
T 2j07_A 28 PVVGLVVLDPNNLK----T-T---------------PRRRAWFLENVRALREAYRARGGALWV--LEGLPWEKVPEAARR 85 (420)
T ss_dssp CEEEEEEECHHHHS----S-C---------------HHHHHHHHHHHHHHHHHHHHTTCCEEE--EESCHHHHHHHHHHH
T ss_pred CEEEEEEECCcccc----C-C---------------HHHHHHHHHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHH
Confidence 68899998863210 0 1 334455566777788888888887655 569999999999999
Q ss_pred cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 148 MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 148 ~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+++.|+.-..- .......- ..|...+++++..+..
T Consensus 86 ~~~~~v~~~~~~-~~~~~~rd----~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 86 LKAKAVYALTSH-TPYGRYRD----GRVREALPVPLHLLPA 121 (420)
T ss_dssp TTCSEEEEECCC-SHHHHHHH----HHHHHHCSSCEEEECC
T ss_pred cCCCEEEEeccc-ChhHHHHH----HHHHHHcCCeEEEeCC
Confidence 999999885433 33222221 2232333788877754
No 54
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=79.84 E-value=9.2 Score=32.30 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
.++|+|++.+..+|..++..+..+.... .+.++.++||...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----------~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTEN-----------PGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTS-----------TTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEECC
Confidence 4789999999999999998887776541 3568999999754
No 55
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=79.34 E-value=30 Score=29.90 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=78.5
Q ss_pred CEEEEEe--CCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccc----cCCCCCCccccCchhHH
Q 044973 27 MKVMVAL--DESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVF----PAGPGGAAFYATSSVEQ 100 (197)
Q Consensus 27 ~~ILv~~--d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~----~~~~~~~~~~~~~~~~~ 100 (197)
+.+|+=+ |..-....||..|+. .+..|..|+++++...... ....+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~----------------~~~~v~~vfi~dp~~~~~~~~~~~~~~~------------ 91 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWS----------------SSDTILPVYCLDPRLFHTTHFFNFPKTG------------ 91 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----------------TCSEEEEEEEECGGGGSBCTTTCCBSSC------------
T ss_pred CeEEEEeCCCcCcchhHHHHHHHh----------------cCCcEEEEEEECchhhcccccccCCCCC------------
Confidence 3455544 444445566766643 2346899999987432110 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC
Q 044973 101 SIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ 180 (197)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~ 180 (197)
........+-|..+.+.+++.|+.+.. ..|++.+.|.+++++.+++.|+.-..- ....... .......+...+
T Consensus 92 ---~~r~~Fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~r-d~~v~~~l~~~g 164 (525)
T 2j4d_A 92 ---ALRGGFLMECLVDLRKNLMKRGLNLLI--RSGKPEEILPSLAKDFGARTVFAHKET-CSEEVDV-ERLVNQGLKRVG 164 (525)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTCCCEE--EESCHHHHHHHHHHHHTCSEEEEECCC-SHHHHHH-HHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEeccC-CHHHHHH-HHHHHHHHHhcC
Confidence 334455666777888888888887655 569999999999999999999886433 3333322 333444555556
Q ss_pred --CCEEEECC
Q 044973 181 --CPIIIVKP 188 (197)
Q Consensus 181 --~pVlvv~~ 188 (197)
|++..+..
T Consensus 165 v~i~~~~~~~ 174 (525)
T 2j4d_A 165 NSTKLELIWG 174 (525)
T ss_dssp SSCEEEEECC
T ss_pred CceEEEEecC
Confidence 78777654
No 56
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=78.47 E-value=8.4 Score=25.57 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC----CcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL----GKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~----~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
...+.|.+++++.+++.||+|-.-. ........-..++.+-.. +.||..+-.+.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERl 95 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCC
Confidence 3568899999999999999995321 111112233556677666 89999886543
No 57
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=77.79 E-value=9.7 Score=27.24 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCceEEEEecCC-hHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 116 RALQICKDKNVKAETLVLTGD-PKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~-~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.+.+.+.+.|++++..-.... ..+.+..... .+|+||+|+....
T Consensus 24 ~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 344445556777765444444 4566665555 6999999987664
No 58
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=77.49 E-value=7.6 Score=33.25 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=28.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
.++|+|++.+.-+|..++.++.+ .+..|+.+|+...
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e----------------~G~eViavtvd~G 45 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQ----------------KGAVPYAYTANLG 45 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHH----------------TTCEEEEEEEECC
T ss_pred CCeEEEEEcChHHHHHHHHHHHH----------------cCCEEEEEEEEcC
Confidence 46899999999999888877743 3468888888655
No 59
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=76.85 E-value=14 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHhhcCCceEEEEecC--C---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 118 LQICKDKNVKAETLVLTG--D---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g--~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+.+++.|+++...-... + ...++.+..++.++|++|+....
T Consensus 53 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 53 AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 466777899877642211 1 14678899999999999998765
No 60
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=76.42 E-value=20 Score=30.60 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=65.5
Q ss_pred EEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH
Q 044973 68 TVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ 147 (197)
Q Consensus 68 ~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~ 147 (197)
.|..|+++++...... .. .........+-|..+.+.+++.|+.+.. ..|++.+.|.+++++
T Consensus 30 ~v~~vfi~dp~~~~~~--~~---------------~~~r~~fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~ 90 (484)
T 1owl_A 30 QLIGLFCLDPQILQSA--DM---------------APARVAYLQGCLQELQQRYQQAGSRLLL--LQGDPQHLIPQLAQQ 90 (484)
T ss_dssp CEEEEEEECHHHHTCT--TC---------------CHHHHHHHHHHHHHHHHHHHHHTSCEEE--EESCHHHHHHHHHHH
T ss_pred CEEEEEEEcchhhcCC--CC---------------CHHHHHHHHHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHH
Confidence 6889999887321000 00 1334455566777777788887887655 569999999999999
Q ss_pred cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 148 MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 148 ~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+++.|+.-..- ...... ........+...++++..+..
T Consensus 91 ~~~~~v~~~~~~-~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 91 LQAEAVYWNQDI-EPYGRD-RDGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp TTCSEEEEECCC-SHHHHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCEEEEeccC-ChhHHH-HHHHHHHHHHHcCcEEEEecC
Confidence 999998885433 333322 234445556667888887764
No 61
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=75.14 E-value=8.9 Score=32.50 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHH---HHHHHHcCC-CEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMI---CQAAEQMHM-DLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I---~~~a~~~~~-dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...++..|++++..+..- ...+.+ .+.+++.++ +.||.++.....+. .-+.-.+.+||+-||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp--------gvva~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG--------PVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH--------HHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH--------hHHhccCCCCEEEee
Confidence 45677778888899999888754 344444 444555677 57887776654433 335568899999999
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 62
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=73.82 E-value=26 Score=26.53 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHhhcCCceEEEEecC--C---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTG--D---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g--~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.+++.|+++...-... + ..+++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 51 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~i---------l~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 51 AKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRL---------LSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSC---------CCHHHHGGGTTCEEEEESS
T ss_pred HHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccccC---------cCHHHHhhccCCeEEECCc
Confidence 56777899877633221 2 1368899999999999999865531 1233444555555555543
No 63
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=72.52 E-value=16 Score=31.23 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=51.8
Q ss_pred CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEe--cCChHHHHHHH
Q 044973 67 GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVL--TGDPKDMICQA 144 (197)
Q Consensus 67 ~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~--~g~~~~~I~~~ 144 (197)
..|..|+|+++...... ...........+-|..+.+.+++.|+.+..... .|++.+.|.++
T Consensus 28 ~~v~~vfi~dp~~~~~~-----------------~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l 90 (471)
T 1dnp_A 28 ARVLALYIATPRQWATH-----------------NMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQV 90 (471)
T ss_dssp SEEEEEEEECHHHHHHT-----------------TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHH
T ss_pred CCEEEEEEECchhhccC-----------------CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHH
Confidence 38999999987321000 011334455566777788888888887766422 68999999999
Q ss_pred HHHcCCCEEEEec
Q 044973 145 AEQMHMDLLVVGS 157 (197)
Q Consensus 145 a~~~~~dliViG~ 157 (197)
+++.+++.|+.-.
T Consensus 91 ~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 91 CAENSVTHLFYNY 103 (471)
T ss_dssp HHHHTCCEEEEEC
T ss_pred HHHcCCCEEEEec
Confidence 9999999988854
No 64
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=72.39 E-value=17 Score=31.68 Aligned_cols=100 Identities=8% Similarity=-0.016 Sum_probs=65.3
Q ss_pred CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---CCceEEEEecCChHHHHHH
Q 044973 67 GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDK---NVKAETLVLTGDPKDMICQ 143 (197)
Q Consensus 67 ~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---gi~~~~~v~~g~~~~~I~~ 143 (197)
..|..|+|+++...... ..+ ........+-|..+.+.+++. |+...+ ..|++.+.|.+
T Consensus 33 ~~vl~vfi~dp~~~~~~--~~~---------------~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v--~~G~~~~vl~~ 93 (538)
T 3tvs_A 33 IALIPVFIFDGESAGTK--NVG---------------YNRMRFLLDSLQDIDDQLQAATDGRGRLLV--FEGEPAYIFRR 93 (538)
T ss_dssp CBCCEEEEECSSSSCST--TCC---------------HHHHHHHHHHHHHHHHHGGGSCSSSSCCEE--EESCHHHHHHH
T ss_pred CCEEEEEecChhhhccC--CCC---------------HHHHHHHHHHHHHHHHHHHHhhcCCCeEEE--EeCCHHHHHHH
Confidence 47889999987532110 011 334456666777888888887 776544 56999999999
Q ss_pred HHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 144 AAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 144 ~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
++++.+++.|+.- +........ -.....+.+...++++..+.
T Consensus 94 L~~~~~a~~V~~n-~~~~~~~~~-RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 94 LHEQVRLHRICIE-QDCEPIWNE-RDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp HHHHHCEEEECEE-CCCCGGGHH-HHHHHHHHHHHSSCCCCEEC
T ss_pred HHHHcCCCEEEEc-cCCCHHHHH-HHHHHHHHHHhCCceEEEec
Confidence 9999999998864 333333221 23344556666777776554
No 65
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=72.35 E-value=10 Score=33.07 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
.......+-|..+.+.+++.|+.... ..|++.+.|.+++++.+++.|+.-.. ....... ...-....+....+++.
T Consensus 61 ~r~~Fl~~sL~~L~~~L~~~G~~L~v--~~G~~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~-RD~~v~~~l~~~gI~~~ 136 (537)
T 3fy4_A 61 NRIRFLLESLKDLDSSLKKLGSRLLV--FKGEPGEVLVRCLQEWKVKRLCFEYD-TDPYYQA-LDVKVKDYASSTGVEVF 136 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEE--EESCHHHHHHHHHTTSCEEEEEECCC-CSHHHHH-HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEE--EECCHHHHHHHHHHHcCCCEEEEecc-ccHHHHH-HHHHHHHHHHHcCCeEE
Confidence 34455666777788888887776654 56999999999999999999888543 3332221 23344556666677776
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
.+.
T Consensus 137 ~~~ 139 (537)
T 3fy4_A 137 SPV 139 (537)
T ss_dssp CCC
T ss_pred Eec
Confidence 554
No 66
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=71.63 E-value=15 Score=31.23 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=64.0
Q ss_pred CEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHH
Q 044973 67 GTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAE 146 (197)
Q Consensus 67 ~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~ 146 (197)
..|..|+++++......+ ..+ ........+-|..+.+.+++.|+++.. ..|++.+.|.+.++
T Consensus 27 ~~v~~vfi~dp~~~~~~~-~~~---------------~~r~~Fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~ 88 (440)
T 2e0i_A 27 DRVIPVFIADPRQLINNP-YKS---------------EFAVSFMINSLLELDDELRKKGSRLNV--FFGEAEKVVSRFFN 88 (440)
T ss_dssp SEEEEEEEECHHHHSSCT-TCC---------------HHHHHHHHHHHHHHHHHHHTTTCCCEE--EESCHHHHHHHHCT
T ss_pred CCEEEEEEeChhhhccCC-cCC---------------HHHHHHHHHHHHHHHHHHHHcCCeEEE--EECCHHHHHHHHHc
Confidence 579999999873211000 011 334455666777888888888887655 46999999999999
Q ss_pred HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 147 QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 147 ~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+++.|+.-..- ...... ........+...++++..+..
T Consensus 89 --~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 89 --KVDAIYVNEDY-TPFSIS-RDEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp --TCSEEEEECCC-SHHHHH-HHHHHHHHHHTTTCEEEEECC
T ss_pred --CCCEEEEeccc-ChHHHH-HHHHHHHHHHHcCceEEEecC
Confidence 99998885432 332222 233444556666788877754
No 67
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=70.60 E-value=29 Score=25.56 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
.++|+|++.+.-+|..++..+.+ . +.++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~---~-------------~~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALK---E-------------FEEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH---H-------------CSEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHH---c-------------CCceEEEEEeCC
Confidence 36899999999888887766543 2 257888888764
No 68
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=69.92 E-value=26 Score=28.95 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=56.9
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++|+|++.+.-+|..++..+ +. .+-+|..+|+........ . ..
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL----~~------------~G~~V~~v~~~~~~~~~~-----~--------~~------- 52 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLL----KE------------QGYDVIGIFMKNWDDTDE-----N--------GV------- 52 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHH----HH------------TTCEEEEEEEECCCCCC------------------------
T ss_pred CCeEEEEEeCHHHHHHHHHHH----HH------------cCCcEEEEEEECCCcccc-----c--------cc-------
Confidence 368999999998887776544 34 456788888865422000 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEec-----------------C---Ch---------HHHHHHHHHHcCCCEEEEe
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLT-----------------G---DP---------KDMICQAAEQMHMDLLVVG 156 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----------------g---~~---------~~~I~~~a~~~~~dliViG 156 (197)
-......+.+...++..|+++...-.. | ++ ...+.++|++.++|.|+.|
T Consensus 53 --c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatG 130 (376)
T 2hma_A 53 --CTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATG 130 (376)
T ss_dssp --CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECC
T ss_pred --CCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 001112344555556667776654322 1 10 2456788889999999999
Q ss_pred cCC
Q 044973 157 SRG 159 (197)
Q Consensus 157 ~~~ 159 (197)
.+.
T Consensus 131 H~a 133 (376)
T 2hma_A 131 HYA 133 (376)
T ss_dssp CSE
T ss_pred cch
Confidence 753
No 69
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=69.62 E-value=6.5 Score=27.87 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecC----CCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSR----GLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~----~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
..+.|.+++++.+++.||+|-. +.........-..++.+-...+.||..+-.+.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4789999999999999999953 21111112223556666666789999986543
No 70
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=69.04 E-value=40 Score=27.01 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.++.+.+.+.. .+++-.-+-. +..+.| .+.|++.++|.+++-...+......-+-..-..|+..++.||++..
T Consensus 70 vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 70 VATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34444443332 3555555544 655554 6778899999999987665444332222344568888999999986
No 71
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=68.83 E-value=26 Score=24.33 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC--CCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV--QCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~--~~pVlvv 186 (197)
+...++..|.++...= ...+.+.+++.+++.++|+|.+.+....... .+..+.+.+-... .++|++=
T Consensus 23 v~~~l~~~G~~Vi~lG-~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIG-VLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHTTCEEEEEE-EEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 4456677787776432 2468999999999999999999876543332 2344555443322 3566554
No 72
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=68.78 E-value=36 Score=25.85 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=38.9
Q ss_pred HHHhhcCCceEEEEec--CC---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLT--GD---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~--g~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.+++.|+++...-.. .+ ...++.+..++.++|++|+....+- +...++...+..++=+++.
T Consensus 48 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~i---------l~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 48 KRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRK---------LGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSC---------CCHHHHHHTTTSEEEEESS
T ss_pred HHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhh---------CCHHHHhhccCCeEEeCcc
Confidence 5567778987653222 11 2467899999999999999765431 1233455555556666553
No 73
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=68.33 E-value=39 Score=26.72 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 58 v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (294)
T 2ehh_A 58 VIEFAVKRAAG-RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIP 135 (294)
T ss_dssp HHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34444443332 24433333222455544 577889999999998766544433222234456788889999998643
No 74
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=66.89 E-value=40 Score=26.56 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-..........-+-..-..|+..++.||++..-+
T Consensus 58 v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (289)
T 2yxg_A 58 VIEKVVDVVNG-RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVP 135 (289)
T ss_dssp HHHHHHHHHTT-SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444443332 24443333222455444 577888999999998766544433222234456888889999998643
No 75
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=66.83 E-value=41 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|...++.||++..-+
T Consensus 58 v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 58 VVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp HHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34444443332 35554444333455544 577889999999998776544433222233456788889999997543
No 76
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=66.82 E-value=46 Score=26.95 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 92 vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 169 (332)
T 2r8w_A 92 AIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNP 169 (332)
T ss_dssp HHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCH
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34334443332 34444444333455544 577889999999998766544433222234456788889999998644
No 77
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=66.72 E-value=48 Score=26.56 Aligned_cols=84 Identities=7% Similarity=0.024 Sum_probs=53.5
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++..+..+|-.+..- .. .++++.+|....+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~------------l~~~I~~Visn~~~-------------------------- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DE------------LDCDIACVISNHQD-------------------------- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TC------------SCSEEEEEEESSST--------------------------
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CC------------CCcEEEEEEECcHH--------------------------
Confidence 3568999898888777776555432 22 35666655433221
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT-GD---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+...+++.|+++...-.. .+ ...++.+..++.++|+||+....
T Consensus 145 ------------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ------------LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ------------THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ------------HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 123466779987764222 12 23578999999999999998655
No 78
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=66.16 E-value=45 Score=26.49 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 70 v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (301)
T 1xky_A 70 LYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVP 147 (301)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444443332 3444433322245544 4567889999999998766544433222234456788889999998543
No 79
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=66.10 E-value=38 Score=25.13 Aligned_cols=35 Identities=3% Similarity=-0.066 Sum_probs=26.6
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
.+|+|++.+..+|..++..+..+. .++.++|+...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------------~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------------PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------------TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------------CCCeEEEeeCC
Confidence 489999999999988887765552 24677887664
No 80
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=65.28 E-value=37 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=26.7
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++|+|++.+.-+|..++.++ +. .+..|+.+++.-.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~L----ke------------~G~eViavt~d~G 49 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWL----CE------------KGFDVIAYVANVG 49 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHH----HH------------TTCEEEEEEEESS
T ss_pred CCEEEEeCCcHHHHHHHHHH----HH------------CCCeEEEEEEEcC
Confidence 79999999998888777665 34 4568888887654
No 81
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.01 E-value=22 Score=25.55 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHhhcCCceEEEEec-CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC--CCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLT-GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV--QCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~-g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~--~~pVlvv 186 (197)
+...++..|.++.. .. ..+.+.|++.+++.++|+|.+.+....... .+..+.+.+-... .++|++=
T Consensus 38 va~~l~~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 38 VARALRDAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEe
Confidence 34456666766653 22 358899999999999999999876543332 2234444443332 3666654
No 82
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=64.80 E-value=46 Score=26.50 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 70 vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (306)
T 1o5k_A 70 LVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 147 (306)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34444443332 34444433333455544 577888999999998766544433222234456788889999998643
No 83
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=64.78 E-value=44 Score=27.61 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=58.5
Q ss_pred ccCCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHH
Q 044973 22 MGKNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQS 101 (197)
Q Consensus 22 m~~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
|....++|+|++.+.-+|..++.. ++. .+-+|..+|+...... .. ..
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~l----L~~------------~G~~V~~v~~~~~~~~----------------~~-~~ 59 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWL----LQQ------------QGYQVEGLFMKNWEED----------------DG-EE 59 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHH----HHT------------TCCEEEEEEEECCCCC----------------SH-HH
T ss_pred CCCCCCEEEEEEEChHHHHHHHHH----HHH------------cCCeEEEEEEEcCccc----------------cc-cC
Confidence 444557999999998888766643 345 4578888988643210 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec-----------------C---Ch---------HHHHHHHHHH-cCCC
Q 044973 102 IRKAQEENSAALLSRALQICKDKNVKAETLVLT-----------------G---DP---------KDMICQAAEQ-MHMD 151 (197)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-----------------g---~~---------~~~I~~~a~~-~~~d 151 (197)
. -......+.+...++..|+++...-.. | ++ ...+.++|.+ .++|
T Consensus 60 ~-----~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad 134 (380)
T 2der_A 60 Y-----CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 134 (380)
T ss_dssp H-----HHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCS
T ss_pred C-----CCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCC
Confidence 0 011223455666667778877654432 1 11 2355677888 9999
Q ss_pred EEEEecCC
Q 044973 152 LLVVGSRG 159 (197)
Q Consensus 152 liViG~~~ 159 (197)
.|+.|.+.
T Consensus 135 ~IatGH~a 142 (380)
T 2der_A 135 YIATGHYV 142 (380)
T ss_dssp EEECCCSC
T ss_pred EEEEcccc
Confidence 99999654
No 84
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=64.66 E-value=45 Score=27.14 Aligned_cols=76 Identities=21% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 89 vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 89 IARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp HHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34344443332 34444433323455544 577889999999998766544433222234456788889999998543
No 85
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=64.60 E-value=43 Score=26.58 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-..........-+-..-..|+..++.||++..-+
T Consensus 58 v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 58 VVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp HHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444443332 34544444333455544 577888999999998766544433222234456788889999998543
No 86
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=64.31 E-value=52 Score=26.16 Aligned_cols=64 Identities=22% Similarity=0.119 Sum_probs=39.9
Q ss_pred CceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 126 VKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+++-.-+-..+..+.| .+.|++.++|.+++-..........-+-..-..|+..++.||++..-+
T Consensus 86 vpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 151 (304)
T 3cpr_A 86 AKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIP 151 (304)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4443333222455544 677889999999988765544433222234456888889999998643
No 87
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=64.26 E-value=41 Score=26.58 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.++...+.+.. .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-
T Consensus 62 v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 62 IFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp HHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 34444443332 2444333322244444 457788899999999876654443322223445677788999999864
No 88
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=64.16 E-value=52 Score=26.11 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+......+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 65 v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 65 CIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp HHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 3444444333212444333322244444 4567889999999998766554443222334566888899999998643
No 89
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=63.90 E-value=42 Score=28.13 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=27.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++|+|++.+.-+|..++.++.+ .+..|..+|+...
T Consensus 6 ~kVvvalSGGlDSsvll~lL~e----------------~G~eV~av~vd~g 40 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLKE----------------QGYDVIAYLANIG 40 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHHH----------------TTEEEEEEEEESS
T ss_pred CeEEEEEcChHHHHHHHHHHHH----------------cCCEEEEEEEECC
Confidence 6899999999988888776643 2357888888654
No 90
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=63.14 E-value=30 Score=26.76 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=50.6
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
++++|.+.+..+|..++-. +.. .+-+|..++..-+.....+...
T Consensus 5 MKvvvl~SGGkDSs~al~~----l~~------------~G~eV~~L~~~~~~~~~s~~~h-------------------- 48 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYW----AIK------------NRFSVKFLVTMVSENEESYMYH-------------------- 48 (237)
T ss_dssp SEEEEECCSSHHHHHHHHH----HHH------------TTCEEEEEEEEECC----------------------------
T ss_pred CEEEEEecCcHHHHHHHHH----HHH------------cCCeEEEEEEEcCCCCCccccC--------------------
Confidence 4799999999888876654 344 4556766654433210000000
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEecCC---hHHHHHHHHHHcCCCEEEEecC
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLTGD---PKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~---~~~~I~~~a~~~~~dliViG~~ 158 (197)
...++.+...++..|++....-..|. -.+.+.+..++.+++.+|.|.-
T Consensus 49 ----~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 49 ----TINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp ----CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred ----CccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 00112233445666888776655553 4566667777778999999863
No 91
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=62.39 E-value=45 Score=26.52 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~ 188 (197)
.++.+.+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-...+......-+-..-..|+..++ .||++..-
T Consensus 69 v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 69 VLEIVAEEAKG-KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp HHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 34444443332 24433333222455444 577888999999998766544433222234456777888 99999853
No 92
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=62.14 E-value=25 Score=26.13 Aligned_cols=69 Identities=7% Similarity=-0.005 Sum_probs=42.6
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC---CCCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV---QCPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv~~ 188 (197)
+...++..|.++.. +-...+.+.+++.+++.++|+|.+......... .+..+.+.+-... .+||++--+
T Consensus 108 va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 108 VAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMM--NMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTH--HHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHH--HHHHHHHHHHhcCCCCCCeEEEECC
Confidence 44555666777654 223468999999999999999999875433222 1233444443332 278777643
No 93
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=62.01 E-value=59 Score=25.90 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=54.2
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++.++..+|-.+..- .. ..+++.+|--..+.
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~------------l~~~i~~Visn~~~-------------------------- 134 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GE------------LKMDIVGIVSNHPD-------------------------- 134 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TS------------SCCEEEEEEESSST--------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CC------------CCcEEEEEEeCcHH--------------------------
Confidence 3468999999988887777665443 23 45666655332221
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLT-GD---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
+...+++.|+++...-.. .+ ...++.+..++.++|+||+....
T Consensus 135 ------------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 ------------FAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ------------THHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ------------HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 112367779988763222 22 13578899999999999998665
No 94
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=62.00 E-value=58 Score=25.83 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=61.7
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.+||.|-+.++.++..+|-.+..- .. ..+++.+|.-..+.
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~------------l~~~i~~Visn~~~--------------------------- 129 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQ------------LGMDVVAVVSNHPD--------------------------- 129 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TS------------SCCEEEEEEESSST---------------------------
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CC------------CCcEEEEEEeCcHH---------------------------
Confidence 468999888888777776655432 22 34666655333221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEec-CC---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLT-GD---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~-g~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
+...+++.|+++...-.. .+ ...++.+..++.++|++|+....+- +...++...+.
T Consensus 130 -----------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~i---------l~~~~l~~~~~ 189 (286)
T 3n0v_A 130 -----------LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQV---------LSPELCRRLDG 189 (286)
T ss_dssp -----------THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCSC---------CCHHHHHHTTT
T ss_pred -----------HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccccc---------cCHHHHhhhcC
Confidence 112366779988763222 12 2357889999999999999865531 12334445555
Q ss_pred CEEEECC
Q 044973 182 PIIIVKP 188 (197)
Q Consensus 182 pVlvv~~ 188 (197)
.++=++|
T Consensus 190 ~~iNiHp 196 (286)
T 3n0v_A 190 WAINIHH 196 (286)
T ss_dssp SEEEEEE
T ss_pred CeEEecc
Confidence 5555544
No 95
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.54 E-value=23 Score=25.11 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
.+.+.+.+.|++++..-......+.+..... ++|+||+|+....
T Consensus 20 ~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 20 AIGRGLVKTGVAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHTTCCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 3444455567877655444444555554444 5999999987664
No 96
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=61.33 E-value=42 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|++.+.-+|..++.++.. . ++..+.++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~---~------------~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKE---T------------YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---H------------HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHH---h------------hCCcEEEEEEeCC
Confidence 4799999999999888877643 3 3567888988754
No 97
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=60.99 E-value=36 Score=26.90 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHH--HHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMI--CQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I--~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+.+.. .+++-.-+-..+..+.| .+.|++.++|.+++-..........-+-..-..|+..++.||++..-+
T Consensus 59 v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (292)
T 2ojp_A 59 VVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVP 136 (292)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCH
T ss_pred HHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444443332 34444333222444444 566778899999988766544433222234456888889999998654
No 98
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=60.85 E-value=51 Score=24.84 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHhhcCCceEEEEecC--C---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTG--D---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g--~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+.+++.|+++...-... + ...++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRI---------LSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHTTSTTCEEEEESS
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchhh---------CCHHHHhhccCCeEEEcCC
Confidence 456677788876522111 1 1367888889999999999765431 1234555666667766654
No 99
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=60.72 E-value=41 Score=26.01 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~ 188 (197)
+...++..|.++...= ...+.+.|++.+++.++|+|.+.+........ +..+.+.+-.. ..+||++--.
T Consensus 143 va~~L~~~G~~Vi~LG-~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG~ 212 (258)
T 2i2x_B 143 VTALLRANGYNVVDLG-RDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGGG 212 (258)
T ss_dssp HHHHHHHTTCEEEEEE-EECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEEST
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEECc
Confidence 4455677788776533 24689999999999999999998754333321 23344444332 2388877643
No 100
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=60.68 E-value=13 Score=29.69 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=64.9
Q ss_pred hhccCCCCEEEEEeCCChh---hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCc
Q 044973 20 EMMGKNEMKVMVALDESGE---SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATS 96 (197)
Q Consensus 20 ~~m~~~~~~ILv~~d~s~~---s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~ 96 (197)
.+|....+--|+.+.+.+. ....+++.++++.. .+++|.++-....
T Consensus 19 ~~~~~~~~g~l~iiGGgedk~~~~~i~~~~v~lagg------------~~~~I~~IptAs~------------------- 67 (291)
T 3en0_A 19 SHMPLSSQPAILIIGGAEDKVHGREILQTFWSRSGG------------NDAIIGIIPSASR------------------- 67 (291)
T ss_dssp -----CCSCCEEEECSSCCSSSCCHHHHHHHHHTTG------------GGCEEEEECTTCS-------------------
T ss_pred CcCCCCCCceEEEEECCCCccChHHHHHHHHHHcCC------------CCCeEEEEeCCCC-------------------
Confidence 4555555566777877653 35788999999887 6677766622111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceEEEEecC---ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHH
Q 044973 97 SVEQSIRKAQEENSAALLSRALQICKDKNV-KAETLVLTG---DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVS 172 (197)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi-~~~~~v~~g---~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~ 172 (197)
. . ....+.+.+.+++.|+ .++...... -....+.+..+ ++|.|+++--....+.+.+.++-.
T Consensus 68 ~-~-----------~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 68 E-P-----------LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp S-H-----------HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHH
T ss_pred C-h-----------HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCH
Confidence 0 0 0122333455666687 555443321 23356667777 799999986555555555666666
Q ss_pred HHHHhhC
Q 044973 173 DYCAHHV 179 (197)
Q Consensus 173 ~~il~~~ 179 (197)
..+|++.
T Consensus 134 ~~~L~~~ 140 (291)
T 3en0_A 134 MDRIRQR 140 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 101
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=59.44 E-value=54 Score=24.66 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=63.4
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQ 106 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
+||.|-+.++..+..+|-.++.- .. .+.++.+|...++..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~------------~~~~I~~Vvs~~~~~--------------------------- 40 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PN------------SSAQIDIVISNKAAV--------------------------- 40 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TT------------CSCEEEEEEESSTTC---------------------------
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CC------------CCcEEEEEEeCCCCh---------------------------
Confidence 37888888988887776544321 12 346666664433311
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEec--CC---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 107 EENSAALLSRALQICKDKNVKAETLVLT--GD---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~gi~~~~~v~~--g~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
...+.+.+.|+++...-.. .+ ...++.+..++.++|++|+....+- +...++...+.
T Consensus 41 ---------~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~ 102 (209)
T 1meo_A 41 ---------AGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRI---------LSGPFVQKWNG 102 (209)
T ss_dssp ---------HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSC---------CCHHHHHHTTT
T ss_pred ---------HHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchhhh---------CCHHHHhhhcC
Confidence 0125667888987643221 12 1357888889999999999865531 12345556666
Q ss_pred CEEEECCC
Q 044973 182 PIIIVKPP 189 (197)
Q Consensus 182 pVlvv~~~ 189 (197)
.++-++|.
T Consensus 103 ~~iNiHpS 110 (209)
T 1meo_A 103 KMLNIHPS 110 (209)
T ss_dssp SEEEEESS
T ss_pred CEEEEccC
Confidence 67766654
No 102
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=59.32 E-value=53 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.2
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|.+.+.-+|..++.++.+ . . .++..+|+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~---~------------~-~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQ---D------------Y-DDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---H------------C-SEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHH---c------------C-CCEEEEEEECC
Confidence 5899999999988888766543 2 2 47888888654
No 103
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=59.27 E-value=65 Score=25.54 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 125 NVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 125 gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
.+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+..
T Consensus 73 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~ 141 (300)
T 3eb2_A 73 RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQF 141 (300)
T ss_dssp SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTT
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccc
Confidence 3555555544455444 456788999999999877655444322234456788889999999975543
No 104
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=59.23 E-value=35 Score=25.24 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=27.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
+++|+|++.+..+|..++..+ .. .+.++.++|+...
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll----~~------------~g~~v~~~~v~~~ 41 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL----KK------------LGYNPHLITINFG 41 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH----HH------------TTEEEEEEEEECS
T ss_pred CCeEEEEEECcHHHHHHHHHH----HH------------cCCCeEEEEEeCC
Confidence 478999999999888777543 34 4567888988765
No 105
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=58.54 E-value=38 Score=26.73 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 59 v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 59 TIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444443332 3444443333345444 4577889999999998765544332211122234666788999998643
No 106
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=57.28 E-value=71 Score=25.54 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 82 v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 159 (315)
T 3na8_A 82 VVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNP 159 (315)
T ss_dssp HHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 34344443332 3555444433344444 4467889999999998766554443222344567888899999998643
No 107
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=57.24 E-value=92 Score=26.64 Aligned_cols=77 Identities=4% Similarity=-0.113 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
...+-|..+.+.+++.|+++.... .|++.+.|.+++++.+++.|+... ........ ........+...++++..+..
T Consensus 62 fl~~sL~~L~~~L~~~G~~L~v~~-~g~~~~~l~~l~~~~~~~~V~~~~-~~~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 62 WLKNSLAQLDSSLRSLGTCLITKR-STDSVASLLDVVKSTGASQIFFNH-LYDPLSLV-RDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE-CSCHHHHHHHHHHHHTCCEEEEEC-CCSHHHHH-HHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEe-CCCHHHHHHHHHHHcCCCEEEEec-ccCHHHHH-HHHHHHHHHHHcCcEEEEECC
Confidence 456677778888888888765522 369999999999999999998864 22332222 223345556667888877764
No 108
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=57.17 E-value=26 Score=28.59 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh----HHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP----KDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~----~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...+++.|+.+...+..|++ .+.+.+.+++.++|+|| +|.-. ...++..+......|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs--------v~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK--------TLDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH--------HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH--------HHHHHHHHHHhcCCCEEEec
Confidence 4566667777778877544555643 45666778888999988 55221 12344445555679999998
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 118 TT 119 (370)
T 1jq5_A 118 TA 119 (370)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 109
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=57.16 E-value=72 Score=25.36 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.+.. .+++-.-+-..+..+ ++.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 73 v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 150 (304)
T 3l21_A 73 LLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIP 150 (304)
T ss_dssp HHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34444443332 344444333234444 34567888999999998766554433222234567888899999998543
No 110
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=56.69 E-value=21 Score=28.67 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH-hhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA-HHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il-~~~~~pVlvv~~~ 189 (197)
...++...++..|+.++...... .....+...+...++|+||+..-+ + .+..++..++ ....+|+.++|-.
T Consensus 43 ~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-G-----Tv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 43 ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD-G-----TLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-H-----HHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-h-----HHHHHHHHHHhCCCCCcEEEecCC
Confidence 44566777777888877665443 344455544444578877764222 2 2234555553 2457899999864
No 111
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=56.34 E-value=23 Score=28.06 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh-hCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH-HVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~-~~~~pVlvv~~~ 189 (197)
.+.++...+...++.++...... ..+..+.+.+.+ ++|+||+..-+ + .+..++..++. ..++|+.++|-.
T Consensus 27 ~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGD-G-----Tl~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 27 NLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGD-G-----TVFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECH-H-----HHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccc-h-----HHHHHHHHHhhCCCCCcEEEecCC
Confidence 34456666777788887765543 445555555433 78887764222 2 12344455544 257899999864
No 112
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=56.34 E-value=41 Score=22.33 Aligned_cols=68 Identities=7% Similarity=0.049 Sum_probs=37.2
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+...+...|+.+. ...+..+++....+...+|+|++...-......+ .....+-....+||+++-...
T Consensus 21 l~~~L~~~g~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 21 IANILNKYGYTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHTTCEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHHcCCEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 3344445565433 2345555554444337899999987542111111 334445445569999986543
No 113
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=56.22 E-value=46 Score=26.54 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=56.2
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccc-------cCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhH
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGI-------TGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVE 99 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~-------~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (197)
.+|+|++.+..+|..++..+....... .+. ...--......+.++|+..... +
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~vv~iDtg~~---f---------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQF-DFEFQSFPMQRLPTVFIDQEET---F---------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCCEEEEECCCTTC---C----------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccc-cccccccCCCCeeEEEEeCCCC---C----------------
Confidence 479999999999999998877653210 000 0000000135678888865422 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec----CChHHHHHHHHHHc-CCCEEEEecCCCCc
Q 044973 100 QSIRKAQEENSAALLSRALQICKDKNVKAETLVLT----GDPKDMICQAAEQM-HMDLLVVGSRGLGK 162 (197)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~----g~~~~~I~~~a~~~-~~dliViG~~~~~~ 162 (197)
.+..++. .+.++..|+++...... ....+.+.++++.. ..+.|++|.+....
T Consensus 114 --------pet~~fv---~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds 170 (306)
T 2wsi_A 114 --------PTLENFV---LETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDP 170 (306)
T ss_dssp --------HHHHHHH---HHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSS
T ss_pred --------HHHHHHH---HHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccc
Confidence 1111122 22234446665432211 23556677777663 68899999876543
No 114
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=56.21 E-value=72 Score=25.10 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.++...+.... .+++-.-+-..+..+. +.+.|++.++|.+++-..........-+=..-..|+..++.||++..-+
T Consensus 58 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3tak_A 58 QVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVP 136 (291)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 344444444432 3454443333345444 4567889999999998766544433222244567888899999998543
No 115
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=55.93 E-value=77 Score=25.34 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.... .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 81 v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 158 (314)
T 3qze_A 81 VIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVP 158 (314)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34344444332 3444443332344444 4567889999999998765544433222244566888899999998643
No 116
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=55.88 E-value=11 Score=25.48 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCceEEEEe-cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 116 RALQICKDKNVKAETLVL-TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~-~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+..+.+++.|++++..-. .+...+ ..+ ++|+|++|-.-+.... -.........+||.++++
T Consensus 25 km~~~a~~~gi~v~i~a~~~~~~~~----~~~--~~DvvLLgPQV~y~~~------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 25 AINEGANLTEVRVIANSGAYGAHYD----IMG--VYDLIILAPQVRSYYR------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHTCSEEEEEEETTSCTT----TGG--GCSEEEECGGGGGGHH------HHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHCCCceEEEEcchHHHHh----hcc--CCCEEEEChHHHHHHH------HHHHHhhhcCCcEEEeCH
Confidence 344445556788776542 333222 223 6999999965443222 234455566899999875
No 117
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=54.73 E-value=71 Score=25.09 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
|..+.+.+++.|+.+-+.+..-...+.+ .+ .+|++=+|+..-.... +..++ -...+||++=..
T Consensus 64 L~~l~~~~~e~Glp~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G 126 (267)
T 2nwr_A 64 VKALRKVKEEFGLKITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKG 126 (267)
T ss_dssp HHHHHHHHHHHCCEEEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECC
T ss_pred HHHHHHHHHhcCCeEEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCC
Confidence 3334555677899998877655444444 22 5899999986543322 33444 256788877544
No 118
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=54.20 E-value=70 Score=24.39 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=39.9
Q ss_pred HHHHhhcCCceEEEEecC--C---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTG--D---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g--~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+.+++.|+++...-... + ...++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~I---------L~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRL---------VRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSC---------CCHHHHHHSTTCEEEEESS
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhHh---------CCHHHHhhccCCEEEEccC
Confidence 456677888876422211 1 1367888899999999999865431 1234555666666666554
No 119
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=54.01 E-value=38 Score=22.41 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.++.+.+++.|+.++.....- +..+ .. .++|+|+.+..-..... -........++||+++.+
T Consensus 22 ~kl~~~~~~~gi~~~i~~~~~~~~~~----~~--~~~D~Ii~t~~l~~~~~------~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 22 QRIEKYAKSKNINATIEAIAETRLSE----VV--DRFDVVLLAPQSRFNKK------RLEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHTCSEEEEEECSTTHHH----HT--TTCSEEEECSCCSSHHH------HHHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHCCCCeEEEEecHHHHHh----hc--CCCCEEEECCccHHHHH------HHHHHhcccCCCEEEECh
Confidence 345556667788766544332 3222 23 37999999865432211 112233345788888765
No 120
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=53.69 E-value=81 Score=24.91 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++...+.... .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+=..-..|+..++.||++..-+
T Consensus 65 v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 142 (297)
T 3flu_A 65 VIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVP 142 (297)
T ss_dssp HHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34444444332 3455443333344443 4567889999999998766544433222234567888899999998643
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=53.48 E-value=1e+02 Score=26.06 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCceEEEEecCChHH---HHHHHHHHcCCCEEEEecCCCCcc
Q 044973 116 RALQICKDKNVKAETLVLTGDPKD---MICQAAEQMHMDLLVVGSRGLGKI 163 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~~~~dliViG~~~~~~~ 163 (197)
++..+....|+++.......++.+ ..++.++..++|+|++-+.++...
T Consensus 146 qL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 146 QLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 344455555666543222234443 345566667899999988776543
No 122
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=53.36 E-value=40 Score=27.02 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
.++...+.+.|+.+....... .....+...+...++|+||+..-+ + .+..++..+.. ...+|+.++|-.
T Consensus 47 ~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD-G-----Tl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD-G-----TINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH-H-----HHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc-h-----HHHHHHHHHhhcccCCCCeEEEecCc
Confidence 455667777888887765442 334444444444578877664222 2 23456666664 457899998854
No 123
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=53.31 E-value=59 Score=25.95 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=23.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ 75 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~ 75 (197)
.+++|.+.+ -+|.-|+ .++.. .+..+..+|+.
T Consensus 180 ~kvlvllSG-vDS~vaa----~ll~~------------~G~~v~~v~~~ 211 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAI----FLMMK------------RGVEVIPVYIG 211 (307)
T ss_dssp CEEEEECSS-HHHHHHH----HHHHH------------BTCEEEEEEES
T ss_pred CcEEEEEeC-CcHHHHH----HHHHh------------CCCeEEEEEEE
Confidence 589999999 7775444 34455 57899999987
No 124
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=52.69 E-value=71 Score=25.05 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=36.3
Q ss_pred ChHHH--HHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDM--ICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~--I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+. +.+.|++.++|.+++-.....+ ....-+-..-..|+..++.||++..-+
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 44444 4567888999999998776554 333222234456788889999998643
No 125
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=52.12 E-value=85 Score=24.71 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 125 NVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 125 gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+=..-..|+..++.||++..-+
T Consensus 71 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 137 (292)
T 3daq_A 71 RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVP 137 (292)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECH
T ss_pred CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 3555444433345444 4467888999999998765544433222234466777889999998543
No 126
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=52.00 E-value=92 Score=25.10 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+.+.+.+.|++++..-........+..... .+|.||+|+.-.
T Consensus 273 la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~y 318 (404)
T 2ohh_A 273 MAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPTI 318 (404)
T ss_dssp HHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCEE
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECccc
Confidence 3334444555567776655444444455555555 799999998754
No 127
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=51.58 E-value=12 Score=24.89 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+..+....+..|.++.+.-......+.|-+..+..++.++|+--...
T Consensus 14 tlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddk 61 (134)
T 2l69_A 14 TLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDK 61 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSH
T ss_pred HHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccH
Confidence 455566667777777776443345667777777777777777665543
No 128
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=51.30 E-value=66 Score=25.41 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=40.5
Q ss_pred CceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhC---CCCEEEECCC
Q 044973 126 VKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHV---QCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~---~~pVlvv~~~ 189 (197)
+++-.-+-..+..+. +.+.|++.++|.+++-...+.. ....-+-..-..|+..+ +.||++..-+
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P 142 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIP 142 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECH
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 454444433345544 4677888999999998766544 33322223445678888 8999998643
No 129
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=51.30 E-value=11 Score=26.93 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCC----cccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLG----KIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~----~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
...+.|.+.+++++++.||+|-.-.. .......-..+..+....++||..+-...
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 46889999999999999999954211 11111112344556666689999986653
No 130
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=51.08 E-value=93 Score=24.86 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++.+.+.... .+++-.-+-..+..+. +.+.|++.++|.+++-...+......-+-..-..|+..++.||++..-+
T Consensus 80 v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 157 (315)
T 3si9_A 80 IIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIP 157 (315)
T ss_dssp HHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCc
Confidence 34444443332 3555444333344444 4567889999999998766544433222234466888899999998643
No 131
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=49.46 E-value=41 Score=27.89 Aligned_cols=65 Identities=11% Similarity=0.247 Sum_probs=41.4
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|+++.... .+. +..+.++..+|.|++|+..- +..-. -+|.. ..-+.++..+|++|+-+.
T Consensus 227 ~eL~~~GIpvtlI~--Dsa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap~ 295 (374)
T 2yvk_A 227 WELMQGGIDVTLIT--DSM---AAHTMKEKQISAVIVGADRIAKNGDTAN-KIGTYGLAILANAFDIPFFVAAPL 295 (374)
T ss_dssp HHHHTTTCEEEEEC--GGG---HHHHHHHTTCCEEEECCSEEETTCCEEE-ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHcCCCEEEEe--hhH---HHHHhhhcCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEeccc
Confidence 44566788887644 333 33444455799999999753 22322 34543 445677788999998654
No 132
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=49.44 E-value=52 Score=21.51 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+.++..++..+|+|++...-.+..... .....+-....+||+++-..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 4444555666899999986543111111 23444444456999988543
No 133
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=49.34 E-value=26 Score=28.28 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
++...+++.+.-+-.....+ ....+|++.|++.+..+|+-.+.+........+......++.++.+||.+-
T Consensus 17 ~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 17 PLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 34455566677666655555 688999999999999999876643211111112244556778889999764
No 134
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=49.25 E-value=26 Score=25.76 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred hhccCCCCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 20 EMMGKNEMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 20 ~~m~~~~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
++|. +||++++.++-...++++....|.+.
T Consensus 2 ~~m~---k~IllgvTGs~aa~k~~~ll~~L~~~ 31 (175)
T 3qjg_A 2 NAMG---ENVLICLCGSVNSINISHYIIELKSK 31 (175)
T ss_dssp ---C---CEEEEEECSSGGGGGHHHHHHHHTTT
T ss_pred CCCC---CEEEEEEeCHHHHHHHHHHHHHHHHC
Confidence 3555 79999999999998888876666443
No 135
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=49.12 E-value=1e+02 Score=24.80 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=25.4
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+.+...|+.++..-........+.+... .+|+||+|+....
T Consensus 275 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~gsp~~~ 315 (402)
T 1e5d_A 275 ESFRDEGCTVKLMWCKACHHSQIMSEIS--DAGAVIVGSPTHN 315 (402)
T ss_dssp HHHHHTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCccC
Confidence 3444557766654444444555655555 7999999986543
No 136
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=49.00 E-value=38 Score=26.50 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 141 ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+++.+++.+.|++|+.+....... ..-+..++.....|.+|+...+
T Consensus 56 ~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 56 ALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEEGG
T ss_pred hhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcCCc
Confidence 334558889999999887654332 2457779999999999997544
No 137
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=48.62 E-value=44 Score=27.82 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=41.6
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|+++.... .+. +..+.++..+|.||+|+..- +..-. -+|.. ..-+.++..+|++|+-+.
T Consensus 231 ~eL~~~GIpvtlI~--Dsa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap~ 299 (383)
T 2a0u_A 231 YECVQEDIPCTLIC--DGA---ASSLMLNRKIDAVVVGADRICQNGDTAN-KIGTYNLAVSAKFHGVKLYVAAPT 299 (383)
T ss_dssp HHHHHTTCCEEEEC--GGG---HHHHHHHSCCCEEEECCSEECTTCCEEE-ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHcCCCEEEEe--hhH---HHHHhhcCCCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEeCCc
Confidence 44566689888754 333 33444556799999999753 22322 34554 444677888999999654
No 138
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=48.16 E-value=36 Score=25.70 Aligned_cols=67 Identities=3% Similarity=-0.051 Sum_probs=41.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEE--ecCCCCcccccccccHHHHHHhhC---CCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVV--GSRGLGKIKRALLGSVSDYCAHHV---QCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliVi--G~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv 186 (197)
+...++..|.++.. +-..-|.+.|++.+++.++|+|.+ ...-..... .+..+.+.+-... ++||++-
T Consensus 112 v~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 112 VTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 44566777776654 223469999999999999999999 433222111 2334445444432 3677664
No 139
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=47.01 E-value=1.1e+02 Score=24.35 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=53.1
Q ss_pred CEEEEEeCCChh----------hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCc
Q 044973 27 MKVMVALDESGE----------SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATS 96 (197)
Q Consensus 27 ~~ILv~~d~s~~----------s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~ 96 (197)
.++.|.+|.+.. .....+++..++.. ....+..+-+.-..
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~------------l~~~v~~~Kvg~~l------------------ 72 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEA------------LGEHVAVFKPQSAF------------------ 72 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHH------------HTTTCSEEEEBHHH------------------
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHHHHH------------hCCcceEEEeeHHH------------------
Confidence 369999999876 33456888888888 44444444332110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH-------cCCCEEEE
Q 044973 97 SVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ-------MHMDLLVV 155 (197)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~-------~~~dliVi 155 (197)
....-..--+.++++.+.+++.|..+-.....+|+...+..+++. .++|+|.+
T Consensus 73 ------f~~~G~~G~~~l~~~i~~l~~~g~~VflDlK~~DIpnTv~~ya~~~~~~~~~lg~D~vTv 132 (284)
T 3l52_A 73 ------FERFGSRGVAVLEKTVAEARAAGALVVMDAKRGDIGSTMAAYAEAFLRKDSPLFSDALTV 132 (284)
T ss_dssp ------HHTTHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHSSTTSTTCCSEEEE
T ss_pred ------HHhcCHHHHHHHHHHHHHHHHCCCcEEEEecccCcHHHHHHHHHHHhccccccCCcEEEE
Confidence 011111222345555555555666666666667766666666553 34676666
No 140
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=46.91 E-value=56 Score=21.12 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=34.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
+...+...|..+.. ..+.. +..+..+...+|+|++...-... .. -.....+-... .+|++++-..
T Consensus 23 l~~~L~~~g~~v~~---~~~~~-~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 23 LDSWFSSLGATTVL---AADGV-DALELLGGFTPDLMICDIAMPRM-NG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHTTCEEEE---ESCHH-HHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHhCCceEEE---eCCHH-HHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 33444555655432 34444 44555677789999998653221 11 12334444433 4899888554
No 141
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=46.72 E-value=23 Score=28.26 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
+.+.+++.|.-+-.....+ ....+|++.|++.+..+|+-.+.+.-. ..-..+......+..++++||.+-
T Consensus 9 ll~~A~~~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 9 LLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred HHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4445555566665545455 688999999999999999887765321 111234567788888999998764
No 142
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=46.63 E-value=62 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=27.3
Q ss_pred HHhhcCCceEEEEecC-C---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 120 ICKDKNVKAETLVLTG-D---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g-~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
.+++.|+++...-... + ...++.+..++.++|+||+....
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 133 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp CTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 3567788877532221 2 23578888999999999997654
No 143
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=46.41 E-value=60 Score=21.52 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 134 TGDPKDMICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 134 ~g~~~~~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
..+..+++....+. ..+|+|++...-.. ... -.+...+-... .+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAE---LAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccH---HHHHHHHHHhCCCCcEEEEeCC
Confidence 45666677776666 79999999865432 111 13344444444 4888888543
No 144
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=46.26 E-value=44 Score=27.37 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|+++.... .+ ++..+.++..+|.|++|++.- +..-. -.|.. ..-+.++..+|++|+-+.
T Consensus 202 ~eL~~~GI~vtlI~--Ds---a~~~~M~~~~Vd~VivGAd~V~aNG~v~N-KiGT~~lAl~Ak~~~vPfyV~ap~ 270 (347)
T 1t9k_A 202 WELMKDGIEVYVIT--DN---MAGWLMKRGLIDAVVVGADRIALNGDTAN-KIGTYSLAVLAKRNNIPFYVAAPV 270 (347)
T ss_dssp HHHHTTTCEEEEEC--GG---GHHHHHHTTCCSEEEECCSEEETTSCEEE-ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHhCCCCEEEEe--hh---HHHHHhhcCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEeccc
Confidence 44566788887644 32 233444545699999999753 22322 34544 444677788999999653
No 145
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=45.83 E-value=24 Score=26.35 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=39.7
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcC--CCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMH--MDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~--~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
.+.+.|+++.... .+. +..+.++.. +|.|++|++.- +..-. -.|+. ..-++++..+|++++-+.
T Consensus 25 eL~~~gI~vtlI~--Dsa---~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a~~ 94 (191)
T 1w2w_B 25 ELVYDKIPSTLIT--DSS---IAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVAPK 94 (191)
T ss_dssp HHHHHTCCBEEBC--GGG---HHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEECCG
T ss_pred HHHHcCCCEEEEe--chH---HHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEeccc
Confidence 3455588887644 322 334444445 99999999753 22322 34654 444567778999998654
No 146
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=45.74 E-value=1.4e+02 Score=25.43 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=26.7
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|++.+.-+|..++..+.+. +.++.++|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----------------g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----------------GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----------------TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----------------CCeEEEEEEeCC
Confidence 68999999998888877655443 267889988654
No 147
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=45.45 E-value=46 Score=26.89 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=40.8
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
...+.+.|+++.... .+....++. .+|.|++|+..- +.... -.|+. ..-+.++...|++|+-+.
T Consensus 165 a~~L~~~gI~vtli~--Dsa~~~~m~-----~vd~VivGAd~i~~nG~v~n-kiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 165 AKALCHLNVPVTVVL--DAAVGYIME-----KADLVIVGAEGVVENGGIIN-KIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp HHHHHTTTCCEEEEC--GGGHHHHGG-----GCSEEEEECSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHHcCCCEEEEe--hhHHHHHHH-----hCCEEEECceEEecCCCeee-hhhhHHHHHHHHHhCCCEEEEecc
Confidence 345556788886643 333333443 799999999752 33332 34543 455778889999999654
No 148
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=45.23 E-value=23 Score=19.85 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=20.2
Q ss_pred ceEEEEecC-ChHHHHHHHHHHcCCCEE
Q 044973 127 KAETLVLTG-DPKDMICQAAEQMHMDLL 153 (197)
Q Consensus 127 ~~~~~v~~g-~~~~~I~~~a~~~~~dli 153 (197)
++..+++.. +..++|+++|++.++|-+
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 455555554 788999999999988743
No 149
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.13 E-value=59 Score=20.85 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+...|..+.. ..+.. +.++..++..+|+|++...-.+. ... .....+-...++|++++-.
T Consensus 20 ~~L~~~g~~v~~---~~~~~-~al~~~~~~~~dlii~D~~~p~~-~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 20 FNLRKEGYEVHC---AHDGN-EAVEMVEELQPDLILLDIMLPNK-DGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHTTCEEEE---ESSHH-HHHHHHHTTCCSEEEEETTSTTT-HHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHhCCEEEEE---eCCHH-HHHHHHhhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCEEEEEC
Confidence 344455654432 34444 44556677789999998654321 111 3444554555789988754
No 150
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=45.08 E-value=1.1e+02 Score=24.20 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=26.9
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|++.+.-+|..++..+.+. .+.++.++|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---------------~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---------------IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---------------HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---------------hCCCEEEEEEcCC
Confidence 58999999998888877666543 2356888888654
No 151
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.05 E-value=64 Score=21.27 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHc
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQM 148 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~ 148 (197)
..++++....++.|..+.+.....+....+-...++.
T Consensus 88 nrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 88 NRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 3566777777888888887555556667777777654
No 152
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=44.96 E-value=1e+02 Score=23.57 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEec-C---------ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLT-G---------DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQC 181 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~-g---------~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~ 181 (197)
+.+.++.+.+++.|+++...+.. | +....+.+.+.+.++|.|.++.. ..+ .....+...+++
T Consensus 132 ~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~i 203 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPA 203 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCC
Confidence 34556666677778876654411 1 12234457788899999988731 111 334567777889
Q ss_pred CEEEECCC
Q 044973 182 PIIIVKPP 189 (197)
Q Consensus 182 pVlvv~~~ 189 (197)
||+..-.-
T Consensus 204 pvva~GGi 211 (273)
T 2qjg_A 204 PVVVAGGP 211 (273)
T ss_dssp CEEEECCS
T ss_pred CEEEEeCC
Confidence 99887543
No 153
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=44.60 E-value=1.2e+02 Score=24.22 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.++.+.+.+.. .+++-.-+- .+..+. +.+.|++.++|.+++-..-+......-+=..-..|+..++.||++..
T Consensus 70 v~~~~v~~~~g-rvpViaGvg-~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 70 EVRRTVEYVHG-RALVVAGIG-YATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHTT-SSEEEEEEC-SSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhCC-CCcEEEEeC-cCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34444444332 355544443 244444 44678889999999986554433332222344667778899999986
No 154
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.18 E-value=93 Score=22.90 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEEEecCChHHHHHHHHH-HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 129 ETLVLTGDPKDMICQAAE-QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 129 ~~~v~~g~~~~~I~~~a~-~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+..++..+.+...-+ ..++|.||-. |.++..|-.+.+.||+-++..
T Consensus 30 ~i~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 30 IPITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred ceEEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 334455665444433222 4678855532 677787878888999998864
No 155
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=44.09 E-value=38 Score=27.86 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc-cc----------cccccHHHHHHhhCCCC
Q 044973 115 SRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI-KR----------ALLGSVSDYCAHHVQCP 182 (197)
Q Consensus 115 ~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~-~~----------~~~gs~~~~il~~~~~p 182 (197)
.++...+++.+.-+-.....+ ....+|++.|++.+..+|+-.+.+.... .. ..+...+..+..++++|
T Consensus 10 ~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VP 89 (349)
T 3elf_A 10 AEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVN 89 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 345555666677666655555 6889999999999999998766432111 00 11234556778888999
Q ss_pred EEEECC
Q 044973 183 IIIVKP 188 (197)
Q Consensus 183 Vlvv~~ 188 (197)
|.+-=.
T Consensus 90 VaLHlD 95 (349)
T 3elf_A 90 VALHTD 95 (349)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 977533
No 156
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=43.34 E-value=26 Score=28.01 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=47.4
Q ss_pred HHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcc--cccccccHHHHHHh--hCCCCEEEE
Q 044973 117 ALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKI--KRALLGSVSDYCAH--HVQCPIIIV 186 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~--~~~~~gs~~~~il~--~~~~pVlvv 186 (197)
+...+++.|.-+-.....+ ....+|++.|++.+..+|+-.+.+.... ....+......+.. ++.+||.+-
T Consensus 12 ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 12 MLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4445555566665555555 6889999999999999998766543211 11234566677888 888999774
No 157
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.19 E-value=88 Score=23.01 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 109 NSAALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 109 ~~~~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
....+.+.+.+.+++.|.+++..-+.. +..+.+.+... .+|.||+++.-..
T Consensus 31 ~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~y~ 82 (204)
T 2amj_A 31 LNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPGWW 82 (204)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCccc
Confidence 444455566666666677887766553 34555555555 6999999987653
No 158
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=43.04 E-value=62 Score=25.66 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHH
Q 044973 25 NEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRK 104 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (197)
..+||.|-+.++.++..+|-.+..- .. ..+++.+|-...+.
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~------------l~~~i~~Visn~~~-------------------------- 127 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GE------------LDMEVVGIISNHPR-------------------------- 127 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TS------------SCCEEEEEEESSCG--------------------------
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CC------------CCeEEEEEEeCChH--------------------------
Confidence 3468888888888777776655443 22 34566554332221
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEecC-C---hHHHHHHHHHHcCCCEEEEecCC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVLTG-D---PKDMICQAAEQMHMDLLVVGSRG 159 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g-~---~~~~I~~~a~~~~~dliViG~~~ 159 (197)
. +...+++.|+++...-... + ...++++..++.++|+||+....
T Consensus 128 --------a---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 128 --------E---ALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp --------G---GCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred --------H---HHHHHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhh
Confidence 0 1233566688876532211 1 23568888888999999997654
No 159
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=42.42 E-value=64 Score=25.39 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=36.3
Q ss_pred ChHHHH--HHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMI--CQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I--~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+.| .+.|++.++|.+++-...... ....-+-..-..|+..++.||++..-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 444444 567888999999998766554 333222234456888889999998643
No 160
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=42.20 E-value=35 Score=27.85 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC-Ccccc-cccccHHHHHHhhCCCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL-GKIKR-ALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~-~~~~~-~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+..+.+++.+ ++|+||+|-.+. +.+.. ++...+.+. ++++++|++.|.+-.
T Consensus 167 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~~ 219 (332)
T 2ppv_A 167 PMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNVM 219 (332)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCSB
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCCC
Confidence 4567778877 799999997553 43433 444555555 688999999998753
No 161
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=42.12 E-value=49 Score=27.15 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC--CcccccccccH-HHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL--GKIKRALLGSV-SDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~--~~~~~~~~gs~-~~~il~~~~~pVlvv~~~ 189 (197)
..+.+.|+++.... .+ ++..+.++..+|.|++|+..- ++ .-.-.|.. ..-+.++..+|++|+-+.
T Consensus 200 ~eL~~~GI~vtlI~--Ds---a~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~ 267 (351)
T 1t5o_A 200 WELMEDGIDVTLIT--DS---MVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPK 267 (351)
T ss_dssp HHHHHTTCCEEEEC--GG---GHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHhCCCCEEEEe--hh---HHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCcc
Confidence 44566789888654 32 234444545699999999763 22 22234654 444667788999998654
No 162
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=41.50 E-value=39 Score=27.00 Aligned_cols=47 Identities=6% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE-ECC
Q 044973 141 ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII-VKP 188 (197)
Q Consensus 141 I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv-v~~ 188 (197)
+++.+.+.+.|.|++|+.+-+.+... ...+...|-+..+.||++ .||
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fPP 105 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFPP 105 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECCC
Confidence 56666777999999994444423332 345666666668999999 883
No 163
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=41.15 E-value=66 Score=25.36 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=35.7
Q ss_pred ChHHHH--HHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMI--CQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I--~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+.| .+.|++.++|.+++-...... ....-+-..-..|+..++.||++..-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 444444 566778899999998766554 333222234456788889999998643
No 164
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=41.03 E-value=55 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+...+++.|+.+......+|-.+.|.+..++ .++|+||.-
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3445566688777655566655555555443 278999883
No 165
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=40.92 E-value=51 Score=24.89 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=14.7
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHH
Q 044973 26 EMKVMVALDESGESFYALKWALDN 49 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~l 49 (197)
..+++|++|+... ..+++.+-.+
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~ 27 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSV 27 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhh
Confidence 3589999999762 4445444443
No 166
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.88 E-value=53 Score=23.62 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=27.5
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHH----HcCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAE----QMHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~----~~~~dliViG 156 (197)
+.+.+.+.|+++......+|-.+.|.+..+ ..++|+||..
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 556677789988777777766666655443 3468999874
No 167
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=39.92 E-value=78 Score=23.64 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 044973 40 FYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQ 119 (197)
Q Consensus 40 ~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (197)
...++.++++|.. .+++..++|.-.... .. ....++..+...+.+.++..
T Consensus 75 ~~~~~~~i~~A~~------------lGa~~v~~~~g~~~~-----------------~~-~~~~~~~~~~~~~~l~~l~~ 124 (254)
T 3ayv_A 75 LRRLLFGLDRAAE------------LGADRAVFHSGIPHG-----------------RT-PEEALERALPLAEALGLVVR 124 (254)
T ss_dssp HHHHHHHHHHHHH------------TTCSEEEEECCCCTT-----------------CC-HHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH------------hCCCEEEECCCCCcc-----------------cc-cccHHHHHHHHHHHHHHHHH
Confidence 4567888999999 788877776432211 00 01123334556667777778
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMH 149 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~ 149 (197)
.+++.|+.+-.+...+...+.+..+.+..+
T Consensus 125 ~a~~~gv~l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 125 RARTLGVRLLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp HHHHHTCEEEEECSSCSSGGGTHHHHHHHT
T ss_pred HHhhcCCEEEEcCCCCCCHHHHHHHHHhcC
Confidence 888888877666555544455666666544
No 168
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=39.73 E-value=35 Score=27.95 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC-Cccc-ccccccHHHHHHhhCCCCEEEECCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL-GKIK-RALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~-~~~~-~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+.+++.+ ++|+||+|-.+. +.+. .++...+.+. ++++++|++.|.+-
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICNI 229 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeCC
Confidence 34566777777 699999997553 4343 3445555565 68899999999863
No 169
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.32 E-value=1.5e+02 Score=23.96 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh--h-CCCCEEEE
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH--H-VQCPIIIV 186 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~--~-~~~pVlvv 186 (197)
.+.+.+.+.+.|++++..-........+..... .+|.||+|+.-...-....+....+.+.. . ...|+.++
T Consensus 274 a~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~ 347 (414)
T 2q9u_A 274 ALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAF 347 (414)
T ss_dssp HHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEE
Confidence 333444455567766655444433444554444 79999999876543222223344444432 1 34555554
No 170
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=39.21 E-value=25 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=21.6
Q ss_pred hhhhccCCCCEEEEEeCCChhh---HHHHHHHHHHhcc
Q 044973 18 GEEMMGKNEMKVMVALDESGES---FYALKWALDNLFG 52 (197)
Q Consensus 18 ~~~~m~~~~~~ILv~~d~s~~s---~~al~~a~~la~~ 52 (197)
|..||. +||++|-+..+ .+-+...+.+++.
T Consensus 1 g~~mM~-----vlv~YDI~~~~~~g~kR~~kv~k~~~~ 33 (100)
T 4es1_A 1 GSHMML-----VLITYDVQTSSMGGTKRLRKVAKACQN 33 (100)
T ss_dssp CTTCEE-----EEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCceEE-----EEEEEECCCCCcccHHHHHHHHHHHHH
Confidence 456777 99999998764 3556666677777
No 171
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=38.88 E-value=59 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+...+++.|+.+.......|-.+.|.+..++ .++|+||.-
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 4566777888776655555544444444333 269999883
No 172
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=38.30 E-value=88 Score=20.93 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=35.8
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
+...+...|+.+. ...+..+ .++..++..+|+|++...-... ..+ .....+-... .+||+++-..
T Consensus 30 l~~~L~~~g~~v~---~~~~~~~-a~~~l~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 30 LQQLLSPLPYTLH---FARDATQ-ALQLLASREVDLVISAAHLPQM-DGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHTTSSCEEE---EESSHHH-HHHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHhcccCcEEE---EECCHHH-HHHHHHcCCCCEEEEeCCCCcC-cHH---HHHHHHHhHCCCCeEEEEECC
Confidence 4445555565432 2344444 4455567789999998754321 111 2334444333 5899988654
No 173
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=37.76 E-value=60 Score=24.52 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEE
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVH 73 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~ 73 (197)
.|+|+|++.++-.+.++++.+-.|.+. +.+++++-
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~-------------g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQE-------------EREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHT-------------TCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-------------CCEEEEEE
Confidence 379999999999999999877776554 57777663
No 174
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=37.57 E-value=83 Score=24.66 Aligned_cols=63 Identities=14% Similarity=0.316 Sum_probs=40.1
Q ss_pred HhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC---Cccccccccc-HHHHHHhhCCCCEEEECCCCC
Q 044973 121 CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL---GKIKRALLGS-VSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 121 ~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~---~~~~~~~~gs-~~~~il~~~~~pVlvv~~~~~ 191 (197)
+.+.|+++.... .+..-.++ + .+|.+++|+.+- +..... .|. ....++++...|++++-+..+
T Consensus 156 L~~~gI~vtli~--dsa~~~~m---~--~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 156 LEFSGIEFEVIT--DAQMGLFC---R--EASIAIVGADMITKDGYVVNK-AGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp HHHTTCCEEEEC--GGGHHHHH---T--TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred HHHCCCCEEEEc--HHHHHHHH---c--cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcCCCEEEeccccc
Confidence 334588887644 33333333 3 799999999763 333333 454 455677888999999976544
No 175
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=37.46 E-value=37 Score=25.55 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=23.2
Q ss_pred hccCCCCEEEEEeCCChhhHHHHHHHHHHhc
Q 044973 21 MMGKNEMKVMVALDESGESFYALKWALDNLF 51 (197)
Q Consensus 21 ~m~~~~~~ILv~~d~s~~s~~al~~a~~la~ 51 (197)
+|....++|++++.++-...++.+.+..|.+
T Consensus 14 ~~~l~~k~IllgvTGsiaa~k~~~lv~~L~~ 44 (206)
T 1qzu_A 14 PLMERKFHVLVGVTGSVAALKLPLLVSKLLD 44 (206)
T ss_dssp --CCSSEEEEEEECSSGGGGTHHHHHHHHC-
T ss_pred hcccCCCEEEEEEeChHHHHHHHHHHHHHhc
Confidence 3444458999999999988888888877766
No 176
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=37.40 E-value=1.3e+02 Score=22.54 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHhhcCCceEEEEecC--C---hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTG--D---PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g--~---~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+.+++.|+++...-... + ...++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~i---------l~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRI---------LSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCCSC---------CCHHHHHHTTTSEEEEESS
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChhhh---------CCHHHHhhccCCEEEEccC
Confidence 466678888876532111 1 1367888899999999999865431 1234555666667766654
No 177
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=37.38 E-value=1.5e+02 Score=23.47 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=59.5
Q ss_pred CEEEEEeCCChh------------hHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCcccc
Q 044973 27 MKVMVALDESGE------------SFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYA 94 (197)
Q Consensus 27 ~~ILv~~d~s~~------------s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~ 94 (197)
..+.|.+|..+. .....+|...++.. ....+..+-+.-..
T Consensus 18 s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd~------------l~~~v~~~Kvg~~l---------------- 69 (290)
T 3r89_A 18 GFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIIDQ------------TYDVCAIYKLQIAY---------------- 69 (290)
T ss_dssp CSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHHH------------HTTSCSEEEEEHHH----------------
T ss_pred CCEEEEECCChhhCchhhccccchHHHHHHHHHHHHHH------------hCCcceEEEecHHH----------------
Confidence 469999999873 34556778888888 44544444332210
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHH-----cCCCEEEEe
Q 044973 95 TSSVEQSIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQ-----MHMDLLVVG 156 (197)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~-----~~~dliViG 156 (197)
....--..-+.+++..+.+++.|..+-.....+|+......+++. .++|+|.+-
T Consensus 70 --------f~~~G~~~v~~L~~~i~~~~~~g~~VflDlK~~DIpnTv~~~a~~~~~~~lg~D~vTvh 128 (290)
T 3r89_A 70 --------YESYGIEGMIAYRDTLSYLREKDLLSIGDVKRSDIAASAKMYAKAHFEGDFETDFITLN 128 (290)
T ss_dssp --------HHTTHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHSGGGCCSEEEEC
T ss_pred --------HHhcCHHHHHHHHHHHHHHHHCCCeEEEEecccCcHHHHHHHHHHHhccccCCCEEEEc
Confidence 111122233355566667777788888778888888777766654 568988883
No 178
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=37.17 E-value=1.3e+02 Score=22.49 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred HHHHHhhcCCceEEEEecC--Ch---HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTG--DP---KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g--~~---~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+.+++.|+++...-... +. ..++.+..++.++|++|+....+- +...++...+..++=++|.
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMRL---------IGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhhhh---------CCHHHHhhhcCCEEEEecC
Confidence 3466778899876522211 11 357888899999999999865431 1234555666667766654
No 179
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=36.97 E-value=1.5e+02 Score=23.27 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEec--C------ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLT--G------DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~--g------~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
++.-+...+..+.+++.|+.++..+-. | ...+.+.++++ +.++|.|.+... .+.............|.
T Consensus 120 ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~~~~lv~~l~ 198 (302)
T 2ftp_A 120 KDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDT-IGVGTAGATRRLIEAVA 198 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEES-SSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CCCcCHHHHHHHHHHHH
Confidence 334445666777888889988765543 2 23456666665 899999999832 22223333455666676
Q ss_pred hhCC-CCEEE
Q 044973 177 HHVQ-CPIII 185 (197)
Q Consensus 177 ~~~~-~pVlv 185 (197)
.+.+ +|+-+
T Consensus 199 ~~~~~~~l~~ 208 (302)
T 2ftp_A 199 SEVPRERLAG 208 (302)
T ss_dssp TTSCGGGEEE
T ss_pred HhCCCCeEEE
Confidence 6664 66543
No 180
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=36.90 E-value=60 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=27.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
++++|++.+.-+|..++..+.+. .+.+++++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---------------~G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---------------IGDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---------------HGGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---------------hCCeEEEEEeccC
Confidence 68999999999888777665443 2357889998654
No 181
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=36.54 E-value=59 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEe-cC
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVG-SR 158 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG-~~ 158 (197)
++++++...+.|..+...+..|--.+.+...++ .++|.+|+| +.
T Consensus 154 I~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~-aGAd~~V~G~sa 198 (231)
T 3ctl_A 154 LAELKAWREREGLEYEIEVDGSCNQATYEKLMA-AGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHH-HTCCEEEECTTT
T ss_pred HHHHHHHHhccCCCceEEEECCcCHHHHHHHHH-cCCCEEEEccHH
Confidence 344555555556677776666634455555544 489999999 54
No 182
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.26 E-value=1.4e+02 Score=22.51 Aligned_cols=71 Identities=11% Similarity=-0.065 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......++.. ..+++.....++|-||+..... . ...-..+....+||+++-..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~------~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--E------HDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--C------CHHHHHSSCTTSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--C------hHHHHHhhccCCCEEEEecc
Confidence 345556666777788777655444543 3466667778999999865432 1 11222445678999998654
Q ss_pred C
Q 044973 190 P 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 97 ~ 97 (291)
T 3egc_A 97 L 97 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 183
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=36.22 E-value=1.4e+02 Score=22.63 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=38.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+.+.+.+.+...+..+..++..+++...-+ ..++|.||-. |+++..|-.+.+.||+-++..
T Consensus 28 ~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 28 FRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCC
Confidence 334444445556666666766555543322 2358865542 677787878888999998864
No 184
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=35.83 E-value=87 Score=20.41 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEEC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVK 187 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~ 187 (197)
..+...|..+. ...+..+ .++..+. ..+|++++...-.. .... .....+-... .+|++++-
T Consensus 33 ~~L~~~g~~v~---~~~~~~~-al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 33 YHLNQLGAEVT---VHPSGSA-FFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTTCEEE---EESSHHH-HHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHcCCEEE---EeCCHHH-HHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 33444455332 2344444 4455566 78999999865432 1111 2344443333 58998886
No 185
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=35.71 E-value=40 Score=27.40 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC-Cccc-ccccccHHHHHHhhCCCCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL-GKIK-RALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~-~~~~-~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
+..+.+++.+ ++|+||+|-.+. +.+. .++...+.+. ++++++|++.|.+-.
T Consensus 168 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 168 PLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNVM 220 (323)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCSB
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCCC
Confidence 4567888887 799999997553 3333 3455566665 688899999998753
No 186
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=35.60 E-value=1.8e+02 Score=23.59 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=40.1
Q ss_pred CceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHh-hCCCCEEEECCC
Q 044973 126 VKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAH-HVQCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~-~~~~pVlvv~~~ 189 (197)
+++-.-+-..+..+. +.+.|++.++|.+++-...+.. ....-+-..-..|+. .++.||++...+
T Consensus 93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 93 IPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp CCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 454443332344444 4677888999999998766544 333222234456787 789999998544
No 187
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=35.53 E-value=1.7e+02 Score=23.28 Aligned_cols=64 Identities=20% Similarity=0.063 Sum_probs=39.1
Q ss_pred CceEEEEecCChHHHH--HHHHHHcCC-CEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 126 VKAETLVLTGDPKDMI--CQAAEQMHM-DLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~~~~I--~~~a~~~~~-dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+++-.-+-..+..+.| .+.|++.++ |.+++-..........-+-..-..|+..++.||++..-+
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (311)
T 3h5d_A 77 VPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIP 143 (311)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 4444433222454444 466788776 998888765544433222244567888899999998643
No 188
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=35.46 E-value=69 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=21.2
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
++|++++.++-.+.++++..-.|.+.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~ 27 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL 27 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC
Confidence 69999999998888888877776443
No 189
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=35.38 E-value=42 Score=26.05 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSR 158 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~ 158 (197)
.+.++++...+.|.++...+..|--.+.+. .+.+.++|.+|+|+.
T Consensus 181 KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~-~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 181 KAKEISKWISSTDRDILLEIDGGVNPYNIA-EIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHHTSCCEEEEESSCCTTTHH-HHHTTTCCEEEESHH
T ss_pred HHHHHHHHHHhcCCCeeEEEECCcCHHHHH-HHHHcCCCEEEEehH
Confidence 345566666666777777777663334444 445569999999963
No 190
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.07 E-value=49 Score=25.48 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh-----------HHHHHHHHHHcCCCEEEEecCCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP-----------KDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~-----------~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
..+.+.+.+.+.|++++..-+..-+ ...+.+... .+|.||+++.-+.
T Consensus 53 La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~Yn 110 (247)
T 2q62_A 53 LAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEECSS
T ss_pred HHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCCCC
Confidence 3333444455567776654443322 455665565 6999999997654
No 191
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=34.98 E-value=67 Score=23.98 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=27.5
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEE
Q 044973 27 MKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVH 73 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~ 73 (197)
+||++++.++-.+.++++..-.|.+. .+.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~------------~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREM------------PNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTC------------TTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhc------------cCCEEEEEE
Confidence 37999999999888888887777544 477887763
No 192
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=34.92 E-value=90 Score=22.44 Aligned_cols=40 Identities=3% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+...+.+.|+.+......+|-.+.|.+..++ .++|+||.-
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 4455667788877655555544444443332 259999883
No 193
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=34.76 E-value=40 Score=27.40 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC-Cccc-ccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGL-GKIK-RALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~-~~~~-~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+..+.+++.+ ++|+||+|-.+. +.+. .++...+.+. ++++++|++.|.+-
T Consensus 174 a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 225 (326)
T 2q7x_A 174 ASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCNI 225 (326)
T ss_dssp BCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEeccC
Confidence 4566777777 699999997553 3343 3445555565 68899999999863
No 194
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.38 E-value=1.1e+02 Score=23.02 Aligned_cols=63 Identities=8% Similarity=-0.049 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHH
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCA 176 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il 176 (197)
.+++.+.+.+++.|.+++..-+.. .-.+...+..+ .+|.||+++.-...-....+-...+.+.
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~y~~~~p~~lK~~iD~v~ 110 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQMPAWWMGEPWILKKYIDEVF 110 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEECChHhccCCHHHHHHHHHHH
Confidence 445555666666788888766553 22333344444 6999999987543322233334444443
No 195
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=33.79 E-value=82 Score=22.51 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=10.7
Q ss_pred cCCCEEEEecCCC
Q 044973 148 MHMDLLVVGSRGL 160 (197)
Q Consensus 148 ~~~dliViG~~~~ 160 (197)
..+|.||+|+.-+
T Consensus 70 ~~aD~ii~gsP~y 82 (200)
T 2a5l_A 70 KNCAGLALGSPTR 82 (200)
T ss_dssp HTCSEEEEEEECB
T ss_pred HHCCEEEEEcChh
Confidence 3799999998754
No 196
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.52 E-value=2.1e+02 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=22.6
Q ss_pred EEEEE-eCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee
Q 044973 28 KVMVA-LDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ 75 (197)
Q Consensus 28 ~ILv~-~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~ 75 (197)
.|++. ..++.-+.-+...|..++.. .+-++.++-..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~------------~G~kVllvd~D 138 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK------------HKKKVLVVSAD 138 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT------------SCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh------------cCCeEEEEecC
Confidence 44443 33456667778888888766 46777766543
No 197
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=33.48 E-value=2.3e+02 Score=24.30 Aligned_cols=75 Identities=8% Similarity=0.043 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHH----HcCCCEEEEecCCCCcccccccccHHHHHHh
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAE----QMHMDLLVVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~----~~~~dliViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
++..+++++..+.+... ..++++..- .| ...+.|.++++ ..++|.||+=.+..+.- +..-.+++
T Consensus 25 ~~v~~~~~~~~~~l~~~---~~l~~~vv~-~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a------~~~i~~l~ 94 (500)
T 4f2d_A 25 RQVTQHAEHVVNALNTE---AKLPCKLVL-KPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPA------KMWINGLT 94 (500)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCSSEEEE-CCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCT------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCeEEEe-cCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccH------HHHHHHHH
Confidence 33344444444433332 235555433 23 33444444444 44799999987776543 34455778
Q ss_pred hCCCCEEEECC
Q 044973 178 HVQCPIIIVKP 188 (197)
Q Consensus 178 ~~~~pVlvv~~ 188 (197)
..++|||+...
T Consensus 95 ~l~~PvL~~~~ 105 (500)
T 4f2d_A 95 MLNKPLLQFHT 105 (500)
T ss_dssp HCCSCEEEEEC
T ss_pred hcCCCEEEEeC
Confidence 89999999853
No 198
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.30 E-value=1.5e+02 Score=22.10 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+.+.|+.+......++.. ..+++.....++|-||+..... . .. -..+...++||+++-..
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-----~~-~~~l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P-----QT-VQEILHQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H-----HH-HHHHHTTSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H-----HH-HHHHHHCCCCEEEEecc
Confidence 455556677777788777655555543 3566667777999999975443 1 12 23456678999998654
No 199
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.01 E-value=1.6e+02 Score=22.40 Aligned_cols=72 Identities=10% Similarity=-0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+..+.+.+++.|+.+......++.. ..+++.....++|.||+......... .. -..+...++||+++-...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLS-----NV-VKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH-----HH-HHHHHTTTCEEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCeEEEECCcC
Confidence 44445566667788777655545543 34566666779999998765433221 12 223567789999986543
No 200
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.85 E-value=1e+02 Score=19.99 Aligned_cols=65 Identities=6% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC----cccccccccHHHHHHhhC-CCCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG----KIKRALLGSVSDYCAHHV-QCPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~----~~~~~~~gs~~~~il~~~-~~pVlvv~~ 188 (197)
+...+...|..+. ...+. .+.++..++..+|+|++...-.. ..... .....+-... .+||+++-.
T Consensus 19 l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 19 VQLLLKNHFSKVI---TLSSP-VSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHTTTSSEEE---EECCH-HHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHhCCcEEE---EeCCH-HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 4444555565443 23343 44556666778999999865320 11111 2344444443 589888743
No 201
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=32.69 E-value=47 Score=24.41 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=21.6
Q ss_pred CEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
+||++++.++-...++++....|.+.
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~ 28 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQH 28 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC
Confidence 69999999999988998887777443
No 202
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=32.68 E-value=1e+02 Score=20.08 Aligned_cols=64 Identities=6% Similarity=0.016 Sum_probs=35.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
+...+...|+.+. ...+. .+.++..++..+|+|++.. -.. ... -.....+-... .+||+++-..
T Consensus 20 l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~-~~~-~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 20 VKNALEKDGFNVI---WAKNE-QEAFTFLRREKIDLVFVDV-FEG-EES---LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHGGGTCEEE---EESSH-HHHHHHHTTSCCSEEEEEC-TTT-HHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhCCCEEE---EECCH-HHHHHHHhccCCCEEEEeC-CCC-CcH---HHHHHHHHHHCCCCCEEEEECC
Confidence 3444455565443 23344 4445566667899999987 322 111 12344444444 4899888543
No 203
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=32.63 E-value=1.6e+02 Score=22.17 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecC--ChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTG--DPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g--~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+..+.+.+++.|+.+......+ ++. ...++.....++|.||+......... ...+. +. ..+||+++-
T Consensus 23 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~-~~-~~iPvV~~~ 94 (304)
T 3o1i_D 23 VNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-----HNLKS-WV-GNTPVFATV 94 (304)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-----TTHHH-HT-TTSCEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHHH-Hc-CCCCEEEec
Confidence 44445555666688777665555 533 34555566679999999755433222 22333 34 789999983
No 204
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=32.49 E-value=95 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH---cCCCEEEEe
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ---MHMDLLVVG 156 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~---~~~dliViG 156 (197)
-+...+++.|+.+.......|-.+.|.+..++ .++|+||.-
T Consensus 53 ~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 53 LVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 35566777788777655555545555544332 479999873
No 205
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.35 E-value=44 Score=24.99 Aligned_cols=72 Identities=11% Similarity=-0.015 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC---CCCEEEE
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV---QCPIIIV 186 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv 186 (197)
.+..+.+.++..|++++..-......+.+.+..+ ++|.|+++--......+.+-..-...++++. ..|++-+
T Consensus 45 ~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~ 119 (206)
T 3l4e_A 45 YVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGE 119 (206)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEE
Confidence 4556667777878865543222223344555555 6999999763323333334334344445443 5777654
No 206
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=32.25 E-value=1.9e+02 Score=23.06 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
+.+.+.|+.++..-........+..... .+|.||+|+....
T Consensus 274 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~y~ 314 (398)
T 1ycg_A 274 DGLVAGGCEVKLFKLSVSDRNDVIKEIL--DARAVLVGSPTIN 314 (398)
T ss_dssp HHHHHTTCEEEEEEGGGSCHHHHHHHHH--HCSEEEEECCCBT
T ss_pred HHHHhcCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCccC
Confidence 3444557766654444444455555444 6999999986543
No 207
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.15 E-value=97 Score=20.72 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=33.6
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKP 188 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~ 188 (197)
..+...|+.+. ...+. ++.++..+...+|+|++...-.. .... .....+-... .+||+++-.
T Consensus 21 ~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 21 QTLELAGFTVS---SFASA-TEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHTTCEEE---EESCH-HHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHcCcEEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 33444565433 23444 44445556678999999875432 1111 2344444443 589988854
No 208
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=32.05 E-value=1.9e+02 Score=22.89 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=39.2
Q ss_pred CceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCC---CcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 126 VKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGL---GKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 126 i~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~---~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+++-.-+-..+..+. +.+.|++.++|.+.+-..-+ ......-+-..-..|...++.||++...+
T Consensus 78 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P 146 (309)
T 3fkr_A 78 VPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAP 146 (309)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECG
T ss_pred CcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 454443333344444 45678899999999976543 12222212234566888899999998654
No 209
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=32.03 E-value=81 Score=22.97 Aligned_cols=41 Identities=17% Similarity=-0.033 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCceEEEEecCChHHHHHHHHHH--cCCCEEEEe
Q 044973 116 RALQICKDKNVKAETLVLTGDPKDMICQAAEQ--MHMDLLVVG 156 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~--~~~dliViG 156 (197)
.+...+.+.|+.+......+|-.+.|.+..++ ..+|+||.-
T Consensus 27 ~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 27 FIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 35566777899887666566544444443322 148999873
No 210
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.76 E-value=1.2e+02 Score=20.44 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHc--CCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQM--HMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~--~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
...+.+.|+.+. ....+..+++ +..++. .+|+|++...-.. ...+ .....+-... .+||+++-..
T Consensus 53 ~~~L~~~g~~v~--~~~~~~~~al-~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 53 TQIFTSEGFNII--DTAADGEEAV-IKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHTTCEEE--EEESSHHHHH-HHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhCCCeEE--EEECCHHHHH-HHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 334445565442 1334444444 444555 7999999865432 1111 2344444444 4888888543
No 211
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=31.76 E-value=1.9e+02 Score=22.80 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCCCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHH
Q 044973 24 KNEMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIR 103 (197)
Q Consensus 24 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (197)
+.++.|=|++.++.+...|+..|..+...+ ++.....+.+.|-.++. ...||.-..+
T Consensus 129 p~~~~vrvaVEGNSsQdsAVaIA~~i~~~~--------~~~~~~~~~FyH~~d~~-~v~~PfylL~-------------- 185 (279)
T 3n4p_A 129 PYLDELRIAVEGNTNQAAAVRIACLIRQSV--------QSSTLIRVLFYHTPDQN-HIEQPFYLMG-------------- 185 (279)
T ss_dssp TTCCEEEEEEBCSSCHHHHHHHHHHHHHHH--------HHHCCCEEEEECEEETT-TEEESCBCCS--------------
T ss_pred cccceEEEEEecCccHHHHHHHHHHHHHHh--------hhcccccEEEEecCCCc-cccCCchhhc--------------
Confidence 456899999999887777777777766551 11144568999988887 6666665553
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEEec------CChHHHHHHHHHHcCCCEEEE
Q 044973 104 KAQEENSAALLSRALQICKDKNVKAETLVLT------GDPKDMICQAAEQMHMDLLVV 155 (197)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~------g~~~~~I~~~a~~~~~dliVi 155 (197)
++-...++.+...+....+...-.++. -||.+-+++..+ +..=+++
T Consensus 186 ----~eK~~Afe~FI~~fNSG~i~ASQelVS~TIkLs~DPVeYL~eQi~--ni~~~~~ 237 (279)
T 3n4p_A 186 ----RDKALAVEQFISRFNSGYIKASQELVSYTIKLSHDPIEYLLEQIQ--NLHRVTL 237 (279)
T ss_dssp ----THHHHHHHHHHHHHHTTCEEEEEEEECSSSBTTBCHHHHHHHHHH--TCCC---
T ss_pred ----cchHHHHHHHHHHhcCCceEEeeeeeeeeEEeccChHHHHHHHHh--hcEEEec
Confidence 333446778888888877776655543 489999999999 5555555
No 212
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=31.66 E-value=1.1e+02 Score=23.36 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHH-HcCCCEEEEecCC
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGDPKDMICQAAE-QMHMDLLVVGSRG 159 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~-~~~~dliViG~~~ 159 (197)
-+.++++++...+.|..+...+..|--.+.+....+ ..++|.+|+|+.=
T Consensus 171 l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaI 220 (237)
T 3cu2_A 171 LDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSAL 220 (237)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHH
Confidence 344556666666666677766665644555555543 1589999999753
No 213
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=31.57 E-value=1.7e+02 Score=22.33 Aligned_cols=39 Identities=3% Similarity=-0.192 Sum_probs=28.2
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
+.+|+|++.+..+|...+..+..+... +..+.++|+...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-------------~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-------------YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-------------SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-------------CCCeeEEEecCC
Confidence 357999999999999888877665331 235677887554
No 214
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=31.50 E-value=1e+02 Score=27.05 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEECC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVKP 188 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~ 188 (197)
+...++..|.++.. +-...+.+.|++.+++.++|+|.+......... .+..+.+.+-.. ..+||+|--.
T Consensus 118 va~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 118 VGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEEcc
Confidence 44456676776654 112368999999999999999999865432222 123344444332 2488877543
No 215
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=31.42 E-value=1.6e+02 Score=22.12 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEe-cCChHHHHHHHHHHcCCCEEEEecC-CCCcccccccccHHHHHHhhCCCCEEE
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVL-TGDPKDMICQAAEQMHMDLLVVGSR-GLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~-~g~~~~~I~~~a~~~~~dliViG~~-~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+..++.++-+.+++++.|++.-..-- .|..+....+.. .+..+|++..+ +......+-+..-..+-|.....+|+-
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 34445666677777777776332221 255555555544 36889999754 444454566777778888888888876
Q ss_pred EC
Q 044973 186 VK 187 (197)
Q Consensus 186 v~ 187 (197)
-.
T Consensus 104 ~t 105 (201)
T 1vp8_A 104 QS 105 (201)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 216
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=31.35 E-value=1.1e+02 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=18.5
Q ss_pred CEEEEEeCCChhhHHH-HHHHHHHhcc
Q 044973 27 MKVMVALDESGESFYA-LKWALDNLFG 52 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~a-l~~a~~la~~ 52 (197)
.++.|++|..+..... .+++..++..
T Consensus 14 ~~LcVgLD~~~~~~~~~~~~~~~lv~~ 40 (255)
T 3qw3_A 14 SLLCVGLDPRAKTAAAAVEECKRLIEQ 40 (255)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchhcchHHHHHHHHHHH
Confidence 4799999998654333 6667777777
No 217
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=31.24 E-value=1e+02 Score=22.20 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=24.7
Q ss_pred HHHHHHH-HhhcCCceEEEEecCCh-------------HHHHHHHHHHcCCCEEEEecCCC
Q 044973 114 LSRALQI-CKDKNVKAETLVLTGDP-------------KDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 114 l~~~~~~-~~~~gi~~~~~v~~g~~-------------~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+.+.+. +.+.|.+++..-....+ ...+.+... .+|.||+|+.-+
T Consensus 22 a~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~~sP~y 80 (197)
T 2vzf_A 22 AEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIVATPIY 80 (197)
T ss_dssp HHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEEEeCcc
Confidence 3334444 55557776655443321 223333333 699999998654
No 218
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=31.19 E-value=1.8e+02 Score=22.46 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+.+.+.+.|+.+......+++. ..+++.....++|-||+...... ......++...++||+++-..
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-------VDEIDDIIDAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHHHHHHHCSSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------hHHHHHHHHcCCCCEEEEcCC
Confidence 45556667777788776655444443 33556666779999998643321 122345667778999888543
No 219
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.17 E-value=1.1e+02 Score=19.73 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
+...+.+.|..+.. ...+..++ .+..++..+|+|++...-... .. -.....+-... .+|++++-..
T Consensus 17 l~~~L~~~g~~v~~--~~~~~~~a-~~~~~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 17 IRNLLIKNDIEILA--ELTEGGSA-VQRVETLKPDIVIIDVDIPGV-NG---IQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHTTEEEEE--EESSSTTH-HHHHHHHCCSEEEEETTCSSS-CH---HHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHhhCCcEEEE--EcCCHHHH-HHHHHhcCCCEEEEecCCCCC-Ch---HHHHHHHHhcCCCCeEEEEeCC
Confidence 33444555643322 23333333 344455689999998764321 11 13344444444 4888887554
No 220
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.16 E-value=1.6e+02 Score=21.83 Aligned_cols=68 Identities=4% Similarity=-0.088 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH-HHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY-CAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~-il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|+.+......++.. ..+++.....++|-||+... . ...-. .+.....||+++-.
T Consensus 25 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-----~~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 25 LIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-----ENIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-----HHHHHHHHHHC-CCEEEGGG
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-----hHHHHHHHHcCCCCEEEEec
Confidence 355556667777788877655545543 45666677789999999651 1 11123 45677899998854
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 95 ~ 95 (277)
T 3e61_A 95 I 95 (277)
T ss_dssp C
T ss_pred c
Confidence 3
No 221
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=31.15 E-value=1.4e+02 Score=21.13 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+...|+.+.. ...+..++ ++.++...+|+|++...-.+. .. -.....+-...+.||+++-
T Consensus 32 ~L~~~g~~v~~--~~~~~~~a-l~~~~~~~~dlvi~D~~~p~~-~g---~~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 32 MLREEGYEIVG--EAGDGQEA-VELAELHKPDLVIMDVKMPRR-DG---IDAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHTTCEEEE--EESSHHHH-HHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHTTCSCEEEEE
T ss_pred HHHHCCCEEEE--EeCCHHHH-HHHHhhcCCCEEEEeCCCCCC-Ch---HHHHHHHHhcCCCCEEEEe
Confidence 33444554322 23444444 455566789999998654321 11 1345555555567998874
No 222
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=31.08 E-value=1.9e+02 Score=23.91 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=66.6
Q ss_pred CEEEEEeCC-C-hhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEE---eeCCCCCccccCCCCCC-ccccCchhHH
Q 044973 27 MKVMVALDE-S-GESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVH---VQQPFQHFVFPAGPGGA-AFYATSSVEQ 100 (197)
Q Consensus 27 ~~ILv~~d~-s-~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~---V~~~~~~~~~~~~~~~~-~~~~~~~~~~ 100 (197)
++++|-+.+ | ++...++++|.+++... .+.+.+|.++. +..|.....|-.....+ ..++.. .
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~~~---------~~~~d~l~iVmR~yfeKPRTs~GwKGli~dP~ld~Sf~-g-- 134 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKKLS---------DELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFN-I-- 134 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHHHH---------HHHTTTEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCC-H--
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHHHH---------HhhccCeEEEEEeccccccCCccccccccCCCcCCCcC-H--
Confidence 567777765 3 55667888998887771 01222343333 23332222111111000 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEE---EEecCCCCcccccccccHHHHHHh
Q 044973 101 SIRKAQEENSAALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLL---VVGSRGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dli---ViG~~~~~~~~~~~~gs~~~~il~ 177 (197)
++.-+.+.++...+.+.|+++-+.+..-...+.+ +|+| -+|++.-.. ..-..+..
T Consensus 135 -------~~GL~i~r~ll~~v~e~GlPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~As 192 (370)
T 1of8_A 135 -------NKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELAS 192 (370)
T ss_dssp -------HHHHHHHHHHHHHHHTTTCCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCceEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHh
Confidence 3333344455555578899999888776444333 7777 677765322 12233555
Q ss_pred hCCCCEEEECC
Q 044973 178 HVQCPIIIVKP 188 (197)
Q Consensus 178 ~~~~pVlvv~~ 188 (197)
...|||.+=++
T Consensus 193 gl~~PVg~Kng 203 (370)
T 1of8_A 193 GLSFPVGFKNG 203 (370)
T ss_dssp TCSSCEEEECC
T ss_pred cCCCeEEEcCC
Confidence 78899987554
No 223
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=30.99 E-value=2e+02 Score=22.79 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC--CCEEEEC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ--CPIIIVK 187 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~--~pVlvv~ 187 (197)
+.++.+.+.. ..+++-.-+-..+..+. +.+.|++.++|.+++-... ......-+=..-..|+..++ .||++..
T Consensus 65 ~v~~~~v~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilYn 141 (313)
T 3dz1_A 65 AVATRFIKRA--KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQD 141 (313)
T ss_dssp HHHHHHHHHC--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 3444444444 23444443322244444 4567888999999996544 22222222234566778888 9999985
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-+
T Consensus 142 ~P 143 (313)
T 3dz1_A 142 YP 143 (313)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 224
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.78 E-value=1.1e+02 Score=19.57 Aligned_cols=66 Identities=6% Similarity=-0.088 Sum_probs=36.0
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEECCCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIVKPPP 190 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~~ 190 (197)
+...+...|..+. ...+. ++.++..++..+|+|++...-... .. -.....+-.. ..+||+++-...
T Consensus 19 l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 19 FKELLEMLGFQAD---YVMSG-TDALHAMSTRGYDAVFIDLNLPDT-SG---LALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHTTEEEE---EESSH-HHHHHHHHHSCCSEEEEESBCSSS-BH---HHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHcCCCEE---EECCH-HHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhhhccCCCCEEEEECCc
Confidence 3344455555332 23344 445556677789999998754321 11 1344445443 458999886543
No 225
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.75 E-value=1e+02 Score=19.39 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=32.0
Q ss_pred HhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEE
Q 044973 121 CKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIV 186 (197)
Q Consensus 121 ~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv 186 (197)
+...|+.+. ...+..+ ..+..++..+|+|++...-.+..... .....+-.. ..+||+++
T Consensus 25 L~~~g~~v~---~~~~~~~-a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 25 LEGRGFTVD---ETTDGKG-SVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHTCEEE---EECCHHH-HHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHhcCceEE---EecCHHH-HHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 333455443 2334444 44555667899999986543111111 344445443 46999998
No 226
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.73 E-value=70 Score=24.60 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++++...+.++|+|.+|-+........ -.+...+- +.+.|+++.+..
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~--~~~v~~ir-~~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKA--RTLIEKVS-QYGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHH--HHHHHHHT-TSCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhc-CCCCCEEEecCC
Confidence 4567777888999999997432222221 23444443 367999998765
No 227
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.64 E-value=1.1e+02 Score=19.76 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh--CCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH--VQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~--~~~pVlvv~~~ 189 (197)
...+...|+.+.. ..+..+++....+...+|+|++...-... ... .....+-.. ..+||+++-..
T Consensus 24 ~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 24 ILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQPE-SGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSSS-CHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCCC-CHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 3444445665433 34555555555444349999998654321 111 334444443 34888887654
No 228
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.45 E-value=1.7e+02 Score=21.87 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......++... ..++.....++|.||+......... .. -..+...++||+++-..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 25 RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SA-IEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HH-HHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HH-HHHHHHcCCCEEEecCC
Confidence 3455566667777887776554455432 4555566679999998654332211 12 23455679999999654
Q ss_pred C
Q 044973 190 P 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 99 ~ 99 (293)
T 3l6u_A 99 I 99 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 229
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=30.23 E-value=1.4e+02 Score=25.20 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH----HHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD----MICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~----~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...+++.|+.+...+..|++.. .+.+.+++ ++|+|| +|... ...++..+......|++.||
T Consensus 106 ~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS--------viD~AK~iA~~~giP~I~IP 176 (450)
T 1ta9_A 106 CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK--------TMDSAKYIAHSMNLPSIICP 176 (450)
T ss_dssp THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH--------HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH--------HHHHHHHHHHhcCCCEEEEe
Confidence 566677777777887754555665433 33334445 788887 55211 13445555566789999998
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
-.
T Consensus 177 TT 178 (450)
T 1ta9_A 177 TT 178 (450)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 230
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=30.18 E-value=93 Score=25.23 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCC-cccccccccHHHHHHhh-CCCCEEEE
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLG-KIKRALLGSVSDYCAHH-VQCPIIIV 186 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~-~~~~~~~gs~~~~il~~-~~~pVlvv 186 (197)
++...+++.|.-+-.....+ ....+|++.|++.+..+|+-.+.+.. .....++.......+.+ ..+||.+-
T Consensus 8 ~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 81 (323)
T 2isw_A 8 QMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIH 81 (323)
T ss_dssp HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 44455666666665555555 68899999999999999988765421 11112344566667777 78998764
No 231
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=30.10 E-value=1.9e+02 Score=22.43 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEec-------C-ChHHHHHHHHH---HcCCCEEEEecCCCCcccccccccHHHHHHhh
Q 044973 110 SAALLSRALQICKDKNVKAETLVLT-------G-DPKDMICQAAE---QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH 178 (197)
Q Consensus 110 ~~~~l~~~~~~~~~~gi~~~~~v~~-------g-~~~~~I~~~a~---~~~~dliViG~~~~~~~~~~~~gs~~~~il~~ 178 (197)
.-+...+..+.+++.|+.++..+-. + ...+.+.++++ +.++|-|.+... .+.............+...
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt-~G~~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT-IGRGTPDTVAAMLDAVLAI 196 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET-TSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC-CCCcCHHHHHHHHHHHHHh
Confidence 3345566677888889988854432 1 23455555555 999999999842 2223333345666777777
Q ss_pred CC-CCEEE
Q 044973 179 VQ-CPIII 185 (197)
Q Consensus 179 ~~-~pVlv 185 (197)
.+ +|+-+
T Consensus 197 ~~~~~l~~ 204 (295)
T 1ydn_A 197 APAHSLAG 204 (295)
T ss_dssp SCGGGEEE
T ss_pred CCCCeEEE
Confidence 76 66543
No 232
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=30.01 E-value=73 Score=26.23 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCC------cccc------cc-----cccHHHHH
Q 044973 114 LSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLG------KIKR------AL-----LGSVSDYC 175 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~------~~~~------~~-----~gs~~~~i 175 (197)
+.++...+++.+.-+=.....+ ....+|++.|++.+..+|+-.+.+.. .+.. .+ +...+..+
T Consensus 17 ~~~ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~ 96 (358)
T 1dos_A 17 VQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQM 96 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHH
Confidence 3344555666676665555555 68899999999999999987765421 1111 11 23455667
Q ss_pred HhhCCCCEEEECC
Q 044973 176 AHHVQCPIIIVKP 188 (197)
Q Consensus 176 l~~~~~pVlvv~~ 188 (197)
..+.++||.+-=.
T Consensus 97 A~~~~VPVaLHlD 109 (358)
T 1dos_A 97 AEHYGVPVILHTD 109 (358)
T ss_dssp HHHHTCEEEEEEC
T ss_pred HHHCCCCEEEECC
Confidence 7788999877543
No 233
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=29.82 E-value=71 Score=25.71 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccHHHHHHhh-CCCCEEEE
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGK-IKRALLGSVSDYCAHH-VQCPIIIV 186 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~-~~~~~~gs~~~~il~~-~~~pVlvv 186 (197)
++...+++.+.-+-.....+ ....+|++.|++.+..+|+-.+.+... ....++.........+ +.+||.+-
T Consensus 7 ~ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 80 (307)
T 3n9r_A 7 EILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_dssp HHHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEE
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34455555666666555555 688999999999999999876654211 1122344555666666 78998764
No 234
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=29.42 E-value=1.9e+02 Score=22.00 Aligned_cols=23 Identities=4% Similarity=-0.126 Sum_probs=19.1
Q ss_pred CEEEEEeCCChhhHHHHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWALDN 49 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~~l 49 (197)
.+|+|++.+..+|..++..+..+
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~ 68 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQI 68 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHh
Confidence 48999999999998888776655
No 235
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=29.42 E-value=81 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=19.9
Q ss_pred HhhcCCceEEEEecCChHHHHHHHHHH---cCCCEEEEe
Q 044973 121 CKDKNVKAETLVLTGDPKDMICQAAEQ---MHMDLLVVG 156 (197)
Q Consensus 121 ~~~~gi~~~~~v~~g~~~~~I~~~a~~---~~~dliViG 156 (197)
+++.|+.+......+|-.+.|.+..++ .++|+||.-
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 667788776555555544555444333 259999883
No 236
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.36 E-value=1e+02 Score=18.95 Aligned_cols=64 Identities=6% Similarity=-0.015 Sum_probs=35.2
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 189 (197)
...+...|..+. ...+. .+..+..+...+|++++...-.. ... -.....+-.. ..+|++++-..
T Consensus 18 ~~~l~~~g~~v~---~~~~~-~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 18 CEMLTAAGFKVI---WLVDG-STALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHTTCEEE---EESCH-HHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHhCCcEEE---EecCH-HHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 344445566433 23344 44445556668999999865432 111 1344555444 45899888554
No 237
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=29.06 E-value=54 Score=26.46 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEE-EecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLV-VGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliV-iG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
..+++...+++.|+.+......++ ..+.+ +.+++.++|+|| +|.-. ...++..+......|++.||
T Consensus 49 ~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGs--------v~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 49 FGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGK--------AIDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHH--------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChH--------HHHHHHHHHhhcCCCEEEec
Confidence 345666777777887765441232 23445 556667889888 55211 13455555555679999998
Q ss_pred CCC
Q 044973 188 PPP 190 (197)
Q Consensus 188 ~~~ 190 (197)
-..
T Consensus 120 TT~ 122 (354)
T 3ce9_A 120 TST 122 (354)
T ss_dssp SCC
T ss_pred Ccc
Confidence 643
No 238
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.29 E-value=1.3e+02 Score=19.94 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKP 188 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~ 188 (197)
...+...|+.+. ...+. .+.+...++..+|+|++...-.. .... .....+-... .+||+++-.
T Consensus 24 ~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 24 KRLIKRLGCNII---TFTSP-LDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHTTTCEEE---EESCH-HHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHcCCeEE---EeCCH-HHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 334444565433 23444 44555666678999999865432 1111 2344444443 588888754
No 239
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.17 E-value=1.9e+02 Score=21.60 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......++.. ..+++.....++|.||+........ ... -..+...++||+++-..
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-----~~~-~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVL-----NPW-LQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHH-----HHH-HHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh-----HHH-HHHHHHCCCcEEEecCC
Confidence 345555666777788777655445543 3455556667999999874431111 112 23455678999998654
Q ss_pred C
Q 044973 190 P 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 96 ~ 96 (291)
T 3l49_A 96 T 96 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 240
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.14 E-value=1.3e+02 Score=19.73 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 135 g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
.+.. +.++..++..+|+||+...-.. ... -.....+-. ...+||+++-..
T Consensus 39 ~~~~-~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 39 GNAI-EAVPVAVKTHPHLIITEANMPK-ISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SSHH-HHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCHH-HHHHHHHcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 4444 4445556668999999865432 111 134455544 345899988553
No 241
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=27.92 E-value=52 Score=25.49 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHH
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDY 174 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~ 174 (197)
+.+..+.+++.|.++-..+..+.+.+.+..+.. ..|+|.+.+-..+.-.+.+..+..++
T Consensus 123 ~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 123 IDRSLQLIKSFGIQAGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHH
Confidence 455666677788887776666677777777766 58888877654444334344444443
No 242
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=27.88 E-value=1.3e+02 Score=19.75 Aligned_cols=42 Identities=12% Similarity=0.254 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+.+.+.+.|++++..-......+ +-..+|.||+|+...
T Consensus 16 ~a~~i~~~l~~~g~~v~~~~~~~~~~~------~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 16 MANEIEAAVKAAGADVESVRFEDTNVD------DVASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTSCCHH------HHHTCSEEEEECCCB
T ss_pred HHHHHHHHHHhCCCeEEEEEcccCCHH------HHhcCCEEEEEcccc
Confidence 344445555556777765443332221 123799999998765
No 243
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=27.85 E-value=2.3e+02 Score=22.52 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=39.3
Q ss_pred CceEEEEecCChHHH--HHHHHHHcCCCEEEEecCCCCc--ccccccccHHHHHHhhCCCCEEEECCCCC
Q 044973 126 VKAETLVLTGDPKDM--ICQAAEQMHMDLLVVGSRGLGK--IKRALLGSVSDYCAHHVQCPIIIVKPPPK 191 (197)
Q Consensus 126 i~~~~~v~~g~~~~~--I~~~a~~~~~dliViG~~~~~~--~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 191 (197)
+++-.-+-..+..+. +.+.|++.++|.+++-...+.. ....-+-..-..|+..++.||++..-+..
T Consensus 81 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~ 150 (318)
T 3qfe_A 81 FPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGV 150 (318)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC-
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcc
Confidence 455443332344444 4567888999999997764322 22211223446688889999999976543
No 244
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=27.72 E-value=63 Score=24.66 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHH
Q 044973 114 LSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVS 172 (197)
Q Consensus 114 l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~ 172 (197)
+.++.+.+++.|.++-..+-.+++.+.+..+.. .+|+|.+.+-..+...+.+..+..
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~pGfggQ~f~~~~l 151 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIH--KADKITVMTVDPGFAGQPFIPEML 151 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCTTCSSCCCCTTHH
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh--cCCEEEEeeeccCcCCccccHHHH
Confidence 456777778888888777766678777777766 789987765544433433433333
No 245
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=27.65 E-value=2.4e+02 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCEEEEecCCCCcccccccccHHHHHHhhCCCCEEE
Q 044973 150 MDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIII 185 (197)
Q Consensus 150 ~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlv 185 (197)
+|.||+-.... ...+.+..++.+||+=
T Consensus 101 ~D~iviR~~~~---------~~~~~lA~~~~vPVIN 127 (328)
T 3grf_A 101 VDICTARLATK---------EMMREMAQHASVPCIN 127 (328)
T ss_dssp CSEEEEECSSH---------HHHHHHHHHCSSCEEE
T ss_pred CCEEEEecCCh---------hHHHHHHHhCCCCEEe
Confidence 89999965432 4557788899999763
No 246
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.63 E-value=2e+02 Score=21.82 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+.......+. ...+++.....++|-||+...... ...-..+...++||+++-..
T Consensus 44 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~~~ 115 (305)
T 3huu_A 44 DVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD--------DPIEHLLNEFKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT--------CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC--------cHHHHHHHHcCCCEEEECCC
Confidence 34555666667777766553322322 245667777789999988543321 11223456778999998654
No 247
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=27.54 E-value=55 Score=23.59 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCC
Q 044973 140 MICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 140 ~I~~~a~~~~~dliViG~~~~~ 161 (197)
.+.+... .+|.||+|+.-+.
T Consensus 65 ~~~~~l~--~aD~ii~~sP~y~ 84 (193)
T 1rtt_A 65 RFREQIR--AADALLFATPEYN 84 (193)
T ss_dssp HHHHHHH--HCSEEEEECCEET
T ss_pred HHHHHHH--hCCEEEEEccccc
Confidence 3444444 6999999986543
No 248
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=27.41 E-value=80 Score=25.40 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCC-cccccccccHHHHHHhhCCCCEEEE
Q 044973 116 RALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLG-KIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 116 ~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~-~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
++.+.+++.+.-+-.....+ ....+|++.|++.+..+|+-.+.+.. ......+......+.. +.+||.+-
T Consensus 7 ~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValH 78 (305)
T 1rvg_A 7 EILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVH 78 (305)
T ss_dssp HHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 34455555566665545455 68899999999999999998775431 1112234566677777 88998764
No 249
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=27.23 E-value=66 Score=26.70 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.-.+.|.+.+++.++|-||.-....-.........+-+.+.++.++|+|.+--..
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~ 375 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQ 375 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 4567888999999999999876655444333223344466688899999986543
No 250
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=26.99 E-value=2e+02 Score=21.64 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCceEEEEec--CChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLT--GDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~--g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+...... +++.. ..++.....++|.||+......... .. -.-+....+||+.+-.
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~-~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFS-----KS-LQRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH-----HH-HHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HH-HHHHHHCCCCEEEEcC
Confidence 3444555555667777654433 34433 4455555678999998654432211 11 2245567899999865
Q ss_pred CC
Q 044973 189 PP 190 (197)
Q Consensus 189 ~~ 190 (197)
..
T Consensus 95 ~~ 96 (297)
T 3rot_A 95 RP 96 (297)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 251
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=26.69 E-value=78 Score=22.66 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=23.8
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH---cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ---MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~---~~~dliViG 156 (197)
+...+++.|.++.......|- +.|.+..++ .++|+||..
T Consensus 32 l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 32 ITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 456667778876544434444 666555443 379999874
No 252
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=26.52 E-value=1.4e+02 Score=21.84 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHhh---cCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKD---KNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~---~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+...+++ .|+.+......+|-.+.|.+..++ .++|+||.-
T Consensus 39 L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 39 LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 3444555 677766555555544444444333 379999883
No 253
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=26.48 E-value=1.3e+02 Score=21.60 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.7
Q ss_pred EEEEeeCC
Q 044973 70 TLVHVQQP 77 (197)
Q Consensus 70 ~lv~V~~~ 77 (197)
.++++.+.
T Consensus 7 ri~~iSD~ 14 (228)
T 1uf3_A 7 YILATSNP 14 (228)
T ss_dssp EEEEEECC
T ss_pred EEEEEeec
Confidence 34445443
No 254
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.47 E-value=2e+02 Score=21.50 Aligned_cols=70 Identities=7% Similarity=-0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......+ +....+.+.....++|-||+...... ... -..+...++||+++-..
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~-~~~l~~~~iPvV~i~~~ 98 (288)
T 3gv0_A 27 QMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-------DPR-VRFMTERNMPFVTHGRS 98 (288)
T ss_dssp HHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-------CHH-HHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-------cHH-HHHHhhCCCCEEEECCc
Confidence 355556667777787766543333 23456777777789999998643211 112 23456779999998654
No 255
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=26.22 E-value=2.1e+02 Score=21.51 Aligned_cols=82 Identities=4% Similarity=-0.140 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Q 044973 38 ESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRA 117 (197)
Q Consensus 38 ~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (197)
.....++.++++|.. .+++...+|.-..... . ..++..+...+.+.++
T Consensus 81 ~~~~~~~~~i~~A~~------------lG~~~v~~~~g~~~~~----------------~----~~~~~~~~~~~~l~~l 128 (286)
T 3dx5_A 81 KTIEKCEQLAILANW------------FKTNKIRTFAGQKGSA----------------D----FSQQERQEYVNRIRMI 128 (286)
T ss_dssp HHHHHHHHHHHHHHH------------HTCCEEEECSCSSCGG----------------G----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------hCCCEEEEcCCCCCcc----------------c----CcHHHHHHHHHHHHHH
Confidence 344567788899999 6777766653222100 0 0123346666778888
Q ss_pred HHHHhhcCCceEEEEecC---ChHHHHHHHHHHcCCC
Q 044973 118 LQICKDKNVKAETLVLTG---DPKDMICQAAEQMHMD 151 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g---~~~~~I~~~a~~~~~d 151 (197)
...+++.|+.+-.+...+ +..+.+..+.+..+.+
T Consensus 129 ~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~ 165 (286)
T 3dx5_A 129 CELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHP 165 (286)
T ss_dssp HHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCT
T ss_pred HHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCC
Confidence 888888898776665443 3356677777766533
No 256
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=26.20 E-value=1.3e+02 Score=23.15 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+.++.+.+.+.|+|.+|-+..-.... .-.+.+.|-+ .+.|+++.|..+
T Consensus 26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~--~~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMIGGTDDVTEDN--VIHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHHTSSCSEEEECCSSCCCHHH--HHHHHHHHTT-SCSCEEEECCCS
T ss_pred HHHHHHHHHcCCCEEEECCcCCcCHHH--HHHHHHHhcC-cCCCEEEecCCH
Confidence 345555667789999999754222211 2344454444 789999998754
No 257
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=26.17 E-value=2.6e+02 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.107 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee
Q 044973 36 SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ 75 (197)
Q Consensus 36 s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~ 75 (197)
...+.+.+++|+++|+. ...+|+++|=.
T Consensus 178 r~~~eRIar~AFe~A~~------------rrkkVT~v~Ka 205 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQG------------RRKKVTSVDKA 205 (375)
T ss_dssp HHHHHHHHHHHHHHHHT------------TTSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHH------------cCCcEEEEECc
Confidence 35778999999999998 67788888743
No 258
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.09 E-value=1.5e+02 Score=19.73 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+.+.+.+.|+.++..-....... +-.++|+||+|+...
T Consensus 15 iA~~ia~~l~~~g~~v~~~~~~~~~~~------~l~~~d~iiig~pty 56 (138)
T 5nul_A 15 MAELIAKGIIESGKDVNTINVSDVNID------ELLNEDILILGCSAM 56 (138)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGGCCHH------HHTTCSEEEEEECCB
T ss_pred HHHHHHHHHHHCCCeEEEEEhhhCCHH------HHhhCCEEEEEcCcc
Confidence 334445555666777776544332222 224799999998754
No 259
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=26.04 E-value=82 Score=23.54 Aligned_cols=28 Identities=14% Similarity=-0.104 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCChhhH-HHHHHHHHHhcc
Q 044973 25 NEMKVMVALDESGESF-YALKWALDNLFG 52 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s~-~al~~a~~la~~ 52 (197)
..++|++++.++-... ++++....|.+.
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~ 34 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVEL 34 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhC
Confidence 3479999999998777 788877666544
No 260
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=26.03 E-value=74 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCCEEEEEeCCChhh-HHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeC
Q 044973 25 NEMKVMVALDESGES-FYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQ 76 (197)
Q Consensus 25 ~~~~ILv~~d~s~~s-~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~ 76 (197)
..|.|++-.|+...+ ...++ |+.+|+. .+.+|+.+-+.+
T Consensus 9 ~~k~iillTDG~~~~g~~p~~-aa~~a~~------------~gi~v~tIGig~ 48 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVE-AARRAHR------------HGIVVNVIGIVG 48 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHH-HHHHHHH------------TTCEEEEEEECC
T ss_pred CccEEEEEccCCCCCCCCHHH-HHHHHHH------------CCCEEEEEEecC
Confidence 446788888886432 23444 4467788 788898888844
No 261
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.99 E-value=1.6e+02 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
+...+++.|..+.......|-.+.|.+..++ .++|+||.-
T Consensus 45 L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4566777788776555555544444444332 248999873
No 262
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=25.77 E-value=1.4e+02 Score=21.14 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=19.4
Q ss_pred CCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 125 NVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 125 gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
|+.+.......|-.+.|.+..++ .++|+||.-
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 77766555555545555544433 379999883
No 263
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.76 E-value=1.6e+02 Score=20.00 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=30.2
Q ss_pred cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 134 TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 134 ~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+ .++..++..+|+|++...-.. ... -.....+-...++|++++-.
T Consensus 57 ~~~~~~-al~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 57 AKDGLE-AVEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp ESSHHH-HHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred cCCHHH-HHHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 344444 445556668999999865432 111 13455566666788888854
No 264
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=25.54 E-value=1.4e+02 Score=23.66 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEe
Q 044973 111 AALLSRALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVG 156 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG 156 (197)
...+..+.+.+++.|+.+...+ +|..+-++.|.+.++|.|=+=
T Consensus 141 ~~~L~~~i~~L~~~GIrVSLFI---Dpd~~qI~aA~~~GAd~IELh 183 (278)
T 3gk0_A 141 FDAVRAACKQLADAGVRVSLFI---DPDEAQIRAAHETGAPVIELH 183 (278)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEEe
Confidence 4567888889999999998877 566777889999999999883
No 265
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.33 E-value=1.8e+02 Score=21.72 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCc-eEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 112 ALLSRALQICKDKNVK-AETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~-~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+..+.+.+++.|+. +......++.. ..+++.....++|-||+.. ..+. -+...++||+++-.
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~----------~~~~~~iPvV~~~~ 93 (277)
T 3hs3_A 27 QIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTIP----------PNFHLNTPLVMYDS 93 (277)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCC----------TTCCCSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHH----------HHHhCCCCEEEEcc
Confidence 3455566667777887 55543334443 3456667778999999876 1111 13466899998865
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 94 ~ 94 (277)
T 3hs3_A 94 A 94 (277)
T ss_dssp C
T ss_pred c
Confidence 4
No 266
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.27 E-value=1.6e+02 Score=19.71 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh---CCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH---VQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 189 (197)
+...+...|+.+. ...+. ++.++..++..+|+|++...-.. ...+ .+...+-.. ..+||+++-..
T Consensus 23 l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 23 LKHILEETGYQTE---HVRNG-REAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHTTTCEEE---EESSH-HHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHCCCEEE---EeCCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 3444455565432 23344 44455667778999999875432 1111 234444333 35899888643
No 267
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=25.16 E-value=76 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGD 136 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~ 136 (197)
..++++.+.+.+.+ +...+..||
T Consensus 48 ~~l~~lv~~~~~~~--~D~vliaGD 70 (336)
T 2q8u_A 48 KALDKVVEEAEKRE--VDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHT--CSEEEEESC
T ss_pred HHHHHHHHHHHHhC--CCEEEECCc
Confidence 45566666665544 445566677
No 268
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.08 E-value=2.1e+02 Score=21.26 Aligned_cols=69 Identities=4% Similarity=0.019 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.+..+.+.+++.|+.+.......+. ...+++.....++|-||+...... ...-..+...++||+++-..
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECCC
Confidence 4455556667777766543222222 245666677789999998543211 11233456778999998544
No 269
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.96 E-value=1.5e+02 Score=19.57 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 135 GDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 135 g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
.+. .+..+..++..+|+|++...-... .. -.....+-... .+||+++-..
T Consensus 38 ~~~-~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 38 ADA-GEAYRLYRETTPDIVVMDLTLPGP-GG---IEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp SSH-HHHHHHHHTTCCSEEEECSCCSSS-CH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCH-HHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHHhCCCCeEEEEECC
Confidence 444 444566667789999998654321 11 13344454443 4888888543
No 270
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=24.82 E-value=1.5e+02 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=19.8
Q ss_pred hhcCCceEEEEecCChHHHHHHHHHH----cCCCEEEEe
Q 044973 122 KDKNVKAETLVLTGDPKDMICQAAEQ----MHMDLLVVG 156 (197)
Q Consensus 122 ~~~gi~~~~~v~~g~~~~~I~~~a~~----~~~dliViG 156 (197)
.+.|+.+.. ...+|-.+.|.+..++ ..+|+||.-
T Consensus 38 ~~~G~~v~~-~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 38 IITPFEVEY-RVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp BCSCCEEEE-EEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HhCCCEEEE-EEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 377888744 3445544444444333 379999883
No 271
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=24.75 E-value=2.6e+02 Score=24.21 Aligned_cols=76 Identities=8% Similarity=-0.022 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEe-----cCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC
Q 044973 105 AQEENSAALLSRALQICKDKNVKAETLVL-----TGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV 179 (197)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~gi~~~~~v~-----~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~ 179 (197)
+........+..+.+.+++.|.++...-. .|++.+.|.+.+++.+++-|.+-...... .++-++..
T Consensus 60 ~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r---------~~~~l~~~ 130 (522)
T 3zxs_A 60 QKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWR---------LIEALEAM 130 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHH---------HHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHH---------HHHHHHHc
Confidence 33445556777888888888998887542 37899999999999999999887222211 23333455
Q ss_pred CCCEEEECCC
Q 044973 180 QCPIIIVKPP 189 (197)
Q Consensus 180 ~~pVlvv~~~ 189 (197)
+|+|-+++..
T Consensus 131 gi~v~~~~~~ 140 (522)
T 3zxs_A 131 PLPVRFLPDD 140 (522)
T ss_dssp SSCEEEECCC
T ss_pred CCcEEEeCCC
Confidence 8999998865
No 272
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=24.64 E-value=2.4e+02 Score=21.70 Aligned_cols=67 Identities=6% Similarity=0.095 Sum_probs=36.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
+...++..|+.+.. ...+..+++ +..++..+|+|++-..=......+ .++..|-....+||+++-..
T Consensus 176 l~~~L~~~g~~v~~--~a~~g~eAl-~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 176 IEALVRELGHDVTD--IAATRGEAL-EAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHTTCEEEE--EESSHHHHH-HHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHhhccCceEEE--EeCCHHHHH-HHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 33445555655532 234554444 455567899999976433111111 23333433448999998653
No 273
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=24.61 E-value=88 Score=23.96 Aligned_cols=48 Identities=6% Similarity=0.001 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 140 MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 140 ~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
..++.+.+.+.|+|.+|-+..-.... ...+.+.+-+ .+.|+++.|..+
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSAI 69 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSCG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCCH
Confidence 34555567789999999754211111 2344444444 789999998764
No 274
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=24.47 E-value=2.2e+02 Score=21.13 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+...|..+ ....+..+ .++.+....+|+|++...-.. ... -.....+-....+||+++-..
T Consensus 55 ~~L~~~g~~v---~~~~~~~~-al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 55 MDLTDAGYVV---DHADSAMN-GLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHTTTCEE---EEESSHHH-HHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHCCCEE---EEeCCHHH-HHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 3444545422 22344444 455566778999999865432 111 134455555456999998653
No 275
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=24.45 E-value=1.6e+02 Score=19.69 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=36.3
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
...+++.|..+.. ...+..++ ++.+++..+|+|++--.=.+ . -|-..-+.+++..+||+++-..
T Consensus 25 ~~~L~~~G~~v~~--~a~~g~eA-l~~~~~~~~DlvllDi~mP~-~----~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 25 EDTLCELGHEVAA--TASRMQEA-LDIARKGQFDIAIIDVNLDG-E----PSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHCCCCCB--CSCCHHHH-HHHHHHCCSSEEEECSSSSS-C----CSHHHHHHHHHTCCSSCCBCTT
T ss_pred HHHHHHCCCEEEE--EECCHHHH-HHHHHhCCCCEEEEecCCCC-C----CHHHHHHHHHcCCCCEEEEecC
Confidence 3444555765421 12344444 45667789999999754321 1 1222333456678999988643
No 276
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=24.42 E-value=2.5e+02 Score=22.82 Aligned_cols=30 Identities=23% Similarity=0.017 Sum_probs=24.1
Q ss_pred ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 36 SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 36 s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
...+.+.+++|+++|+. ...+|+++|=...
T Consensus 143 ~~~~eRiar~AF~~A~~------------rrkkvt~v~KaNv 172 (336)
T 1wpw_A 143 RFASERIAKVGLNFALR------------RRKKVTCVHKANV 172 (336)
T ss_dssp HHHHHHHHHHHHHHHHT------------TTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHH------------hCCeEEEEECCcc
Confidence 45788999999999999 6778888875443
No 277
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=24.21 E-value=2e+02 Score=20.70 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCceEEEEec-CC------hHHHHHHHHHHcCCCEEEE
Q 044973 113 LLSRALQICKDKNVKAETLVLT-GD------PKDMICQAAEQMHMDLLVV 155 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~-g~------~~~~I~~~a~~~~~dliVi 155 (197)
.-..+.+.++..|+++++.... ++ ....-++.|++.++|+.|=
T Consensus 34 ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 34 LAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 4445556667778886544332 22 2567788899999998875
No 278
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.04 E-value=1.5e+02 Score=19.16 Aligned_cols=64 Identities=6% Similarity=-0.006 Sum_probs=35.1
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
...+...|+.+. ...+. ++.++..+...+|+|++...-.. ... -.....+-. ...+||+++-..
T Consensus 24 ~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 24 KTILSDAGFHII---SADSG-GQCIDLLKKGFSGVVLLDIMMPG-MDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHHTTCEEE---EESSH-HHHHHHHHTCCCEEEEEESCCSS-SCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHHCCeEEE---EeCCH-HHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 333444465432 23333 45556667778999999865432 111 133444544 235899988554
No 279
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.87 E-value=2.6e+02 Score=21.71 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH---HHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD---MICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~---~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+......++... .|..+... .++|.||+.. ..... ...-..+....+||+++-.
T Consensus 22 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~------~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 22 YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVA------PQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHH------HHHHHHHTTSCCEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhH------HHHHHHHHhCCCcEEEEcC
Confidence 344455556666888776654455543 33344443 6999999853 21111 1122345677899999854
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 95 ~ 95 (350)
T 3h75_A 95 P 95 (350)
T ss_dssp C
T ss_pred C
Confidence 3
No 280
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=23.87 E-value=1.8e+02 Score=21.93 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHH
Q 044973 120 ICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSD 173 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~ 173 (197)
.+++.|.++-..+-.+++.+.+..+.....+|+|.+.+-..+...+.+..+..+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ 162 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMG 162 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHH
Confidence 677788888776655677777766655335999988886665555544444444
No 281
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=23.81 E-value=1.3e+02 Score=24.68 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCceEEEEecCC----hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGD----PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~----~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+++.+.+++ |+.+......++ ..+.+.+.+++.++|+||- --+-+ ...++..+......|++.||-
T Consensus 67 ~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa-vGGGs------~~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 67 LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVG-VGGGK------TADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEE-ESSHH------HHHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEE-eCCcH------HHHHHHHHHHhcCCCEEEecC
Confidence 45566667777 887744444454 3456667778889997653 22211 134556666677899999996
Q ss_pred C
Q 044973 189 P 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 139 T 139 (387)
T 3uhj_A 139 I 139 (387)
T ss_dssp S
T ss_pred c
Confidence 4
No 282
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.73 E-value=1.6e+02 Score=19.23 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
+...+...|..+.... ..+. .+.++..++..+|+|++...-.. ... -.....+-. ...+||+++-..
T Consensus 21 l~~~L~~~~~~~~v~~-~~~~-~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 21 IRRVLDRKDIHCQLEF-VDNG-AKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHTTCCEEEEE-ESSH-HHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHhcCCCeeEEE-ECCH-HHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 4445555566544322 3344 44455666778999999865322 111 123444443 235899988654
No 283
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=23.38 E-value=2e+02 Score=21.46 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+... .+|.||+|+.-.
T Consensus 71 ~~~~~~l~--~AD~iI~~sP~y 90 (242)
T 1sqs_A 71 GVIKKELL--ESDIIIISSPVY 90 (242)
T ss_dssp HHHHHHHH--HCSEEEEEEEEC
T ss_pred HHHHHHHH--HCCEEEEEcccc
Confidence 44444444 799999998754
No 284
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=23.03 E-value=1.7e+02 Score=23.01 Aligned_cols=122 Identities=5% Similarity=-0.017 Sum_probs=61.9
Q ss_pred CEEEEEeCCChhhHHHHHHHH-HHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHH
Q 044973 27 MKVMVALDESGESFYALKWAL-DNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKA 105 (197)
Q Consensus 27 ~~ILv~~d~s~~s~~al~~a~-~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++.+-++....+...++.++ .++.. ++..+.+-..........+.++.+
T Consensus 50 mr~~~~~~~~~~~~~~L~~~f~~la~~------------~~m~~~l~~~~~~~ri~vl~Sg~g----------------- 100 (288)
T 3obi_A 50 MRVVFNAAAKVIPLASLRTGFGVIAAK------------FTMGWHMRDRETRRKVMLLVSQSD----------------- 100 (288)
T ss_dssp EEEEEEESSCCCCHHHHHHHHHHHHHH------------TTCEEEEEETTSCEEEEEEECSCC-----------------
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHH------------cCCEEEeeccCCCcEEEEEEcCCC-----------------
Confidence 456666654333444454444 56666 777777665433322233334443
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCCh-HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 106 QEENSAALLSRALQICKDKNVKAETLVLTGDP-KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~gi~~~~~v~~g~~-~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
. .+..+...++...++++...+..|. .+ +...|++.++...++.....+ +.-+..-...+++.....++
T Consensus 101 --~----nl~~ll~~~~~g~l~~~i~~Visn~p~~-~~~~A~~~gIp~~~~~~~~~~---r~~~~~~~~~~l~~~~~Dli 170 (288)
T 3obi_A 101 --H----CLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVNKDT---RRQQEAAITALIAQTHTDLV 170 (288)
T ss_dssp --H----HHHHHHHHHHTTSSCEEEEEEEESSCGG-GSCCTTTTTCCEEECCCCTTT---HHHHHHHHHHHHHHHTCCEE
T ss_pred --C----CHHHHHHHHHCCCCCeEEEEEEcCCChh-HHHHHHHcCCCEEEeCCCccc---HHHHHHHHHHHHHhcCCCEE
Confidence 1 2333334444445666655554443 33 346688888888877533211 11112233445666677777
Q ss_pred EEC
Q 044973 185 IVK 187 (197)
Q Consensus 185 vv~ 187 (197)
++-
T Consensus 171 vla 173 (288)
T 3obi_A 171 VLA 173 (288)
T ss_dssp EES
T ss_pred Ehh
Confidence 664
No 285
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=23.02 E-value=1.1e+02 Score=23.03 Aligned_cols=27 Identities=11% Similarity=-0.172 Sum_probs=22.4
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhcc
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFG 52 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~ 52 (197)
.++|+|++.++-...++++.+..|.+.
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~~ 45 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTEW 45 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHTT
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhcC
Confidence 379999999999888888877777554
No 286
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.92 E-value=88 Score=24.68 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh------------HHHHHHHHHHcCCCEEEEecCCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP------------KDMICQAAEQMHMDLLVVGSRGLG 161 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~------------~~~I~~~a~~~~~dliViG~~~~~ 161 (197)
..+.+.+.+.+.|++++..-+..-+ ...+.+... .+|.||+++.-+.
T Consensus 77 La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 77 AVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEEEEET
T ss_pred HHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEcCccc
Confidence 3333444455567766654433222 455665565 6999999986643
No 287
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=22.81 E-value=2.2e+02 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 136 DPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 136 ~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
.+.+.|++.|++.++|+|.+...--
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t 191 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVT 191 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecC
Confidence 5899999999999999999976543
No 288
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=22.75 E-value=1.4e+02 Score=22.86 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHHHH--HcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 139 DMICQAAE--QMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 139 ~~I~~~a~--~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+.|.+..+ ...+|++|+-.-+- .......+.....+++...+||++|-.
T Consensus 119 ~~I~~~~~~l~~~~D~vlIEGagG-l~~pl~~~~~~adlA~~l~~pVILV~~ 169 (242)
T 3qxc_A 119 DNLTQRLHNFTKTYDLVIVEGAGG-LCVPITLEENMLDFALKLKAKMLLISH 169 (242)
T ss_dssp HHHHHHHHHGGGTCSEEEEECCSC-TTCBSSSSCBHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCC-ccccccccchHHHHHHHcCCCEEEEEc
Confidence 44554443 24788888865431 111111123345578888888888754
No 289
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=22.69 E-value=2.2e+02 Score=20.43 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecC--ChHHHHHHHHHH-----cCCCEEEE-ec--CCCCcccccccccHHHHHHh
Q 044973 108 ENSAALLSRALQICKDKNVKAETLVLTG--DPKDMICQAAEQ-----MHMDLLVV-GS--RGLGKIKRALLGSVSDYCAH 177 (197)
Q Consensus 108 ~~~~~~l~~~~~~~~~~gi~~~~~v~~g--~~~~~I~~~a~~-----~~~dliVi-G~--~~~~~~~~~~~gs~~~~il~ 177 (197)
.-.+..++-+.+.+.+.|.+++..-+.| ...-.+..+++. .++|.||. |. ++.+..-......++..|.+
T Consensus 25 ~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~ 104 (157)
T 2i0f_A 25 DLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTD 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHH
Confidence 3445677777788888887776666667 456666777877 78887764 54 34444434444555555544
Q ss_pred ---hCCCCEEE
Q 044973 178 ---HVQCPIII 185 (197)
Q Consensus 178 ---~~~~pVlv 185 (197)
+...||..
T Consensus 105 vsl~~~vPV~~ 115 (157)
T 2i0f_A 105 LSVEESIAIGN 115 (157)
T ss_dssp HHHHTTCCEEE
T ss_pred HHhhcCCCEEE
Confidence 45688764
No 290
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.68 E-value=2.5e+02 Score=21.08 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCh-HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTGDP-KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g~~-~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+++.|+.+......++. ....++.....++|-||+....... ...+. +.. .+||+++-..
T Consensus 28 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~-~~~-~iPvV~i~~~ 97 (289)
T 3k9c_A 28 DLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELGA-LAD-RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHHH-HHT-TSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHHH-HHc-CCCEEEEcCC
Confidence 34555666677778777665544432 4445555556688988887544321 22233 344 8999888543
No 291
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.56 E-value=2.5e+02 Score=21.05 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCh--HHH---HHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDP--KDM---ICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~--~~~---I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+..+.+.+++.|+.+......+++ ... +++.....++|-||+...... ....+ .+...++||+++-
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~-~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-------DEDLD-ELHRMHPKMVFLN 97 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHH-HHHHHCSSEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-------HHHHH-HHhhcCCCEEEEc
Confidence 4444555566677766543323333 233 556666678999998643322 11223 3345789999885
Q ss_pred CC
Q 044973 188 PP 189 (197)
Q Consensus 188 ~~ 189 (197)
..
T Consensus 98 ~~ 99 (290)
T 2rgy_A 98 RA 99 (290)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 292
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.50 E-value=1.5e+02 Score=18.63 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=32.9
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhh-CCCCEEEECC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHH-VQCPIIIVKP 188 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~ 188 (197)
..+...|..+. ...+..+ .+...+...+|++++...-.+. ... .....+-.. ..+|++++-.
T Consensus 21 ~~l~~~~~~v~---~~~~~~~-a~~~~~~~~~dlvl~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 21 EVFNKEGYQTF---QAANGLQ-ALDIVTKERPDLVLLDMKIPGM-DGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHTTTCEEE---EESSHHH-HHHHHHHHCCSEEEEESCCTTC-CHH---HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHCCcEEE---EeCCHHH-HHHHHhccCCCEEEEecCCCCC-CHH---HHHHHHHHhCCCCCEEEEEc
Confidence 33444465432 2344444 4455566689999998654321 111 234444333 3589888854
No 293
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.47 E-value=83 Score=22.88 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=10.0
Q ss_pred CCCEEEEecCCC
Q 044973 149 HMDLLVVGSRGL 160 (197)
Q Consensus 149 ~~dliViG~~~~ 160 (197)
.+|.||+|+.-.
T Consensus 78 ~aD~ii~gsP~y 89 (211)
T 1ydg_A 78 WAEAIVFSSPTR 89 (211)
T ss_dssp HCSEEEEEEEEE
T ss_pred HCCEEEEEcCcc
Confidence 699999998654
No 294
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=22.33 E-value=2.1e+02 Score=22.72 Aligned_cols=40 Identities=13% Similarity=-0.142 Sum_probs=31.1
Q ss_pred CCEEEEEeCC--ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCC
Q 044973 26 EMKVMVALDE--SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQP 77 (197)
Q Consensus 26 ~~~ILv~~d~--s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~ 77 (197)
-+++++.+.. |-.+..-|...++++.. ...++.+++....
T Consensus 80 ~~HaliGISPfNSyFS~dri~~Li~Wa~~------------~F~~VdVl~~d~~ 121 (289)
T 2x9q_A 80 GDHAVIGVSPGNSYFSRQRLRDLGLWGLT------------NFDRVDFVYTDVH 121 (289)
T ss_dssp TCEEEEEECTTCTTSCHHHHHHHHHHHHH------------HCSEEEEEECCSS
T ss_pred CCeEEEEECCCCCccCHHHHHHHHHHHHh------------cCCeeEEEecChH
Confidence 3689999986 56777778888888888 6788999985544
No 295
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.31 E-value=1.4e+02 Score=20.71 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHhhcCCceEEEEecCCh-H----HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEE
Q 044973 120 ICKDKNVKAETLVLTGDP-K----DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPII 184 (197)
Q Consensus 120 ~~~~~gi~~~~~v~~g~~-~----~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVl 184 (197)
.+++.|++++.......- . ..|.+..++..+|+||--..+.... .--|....+..-...+|++
T Consensus 62 ~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 62 WLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhCCCeE
Confidence 445678888875432111 1 3599999999999999866442111 1123333444444566664
No 296
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.07 E-value=2.6e+02 Score=21.05 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEecC-ChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 112 ALLSRALQICKDKNVKAETLVLTG-DPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 112 ~~l~~~~~~~~~~gi~~~~~v~~g-~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
..+..+.+.+.+.|+.+......+ .....+.+.....++|-||+....... ..-..+...++||+++-..
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECCC
Confidence 345556666777788776654432 345677788888899999997544321 1223456778999998654
No 297
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=22.06 E-value=1.4e+02 Score=25.76 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCC-CCEEEECCCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQ-CPIIIVKPPP 190 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~~~~ 190 (197)
.+.+.+..|++.++..||+-+.. |.++..+.+.-| |||+.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCCH
Confidence 55666677888899988887654 567777777766 9999986653
No 298
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=21.99 E-value=2.7e+02 Score=21.37 Aligned_cols=82 Identities=10% Similarity=-0.039 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 044973 40 FYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRALQ 119 (197)
Q Consensus 40 ~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (197)
...++.++++|.. .+++..+++...... ..+ ......++..+...+.+.++..
T Consensus 113 ~~~~~~~i~~A~~------------lGa~~v~~~~g~~~~-~~~--------------~~~~~~~~~~~~~~~~l~~l~~ 165 (316)
T 3qxb_A 113 YQHLKRAIDMTAA------------MEVPATGMPFGSYSA-ADA--------------LNPARREEIYAIARDMWIELAA 165 (316)
T ss_dssp HHHHHHHHHHHHH------------TTCCEEEECCBBCCH-HHH--------------TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------cCCCEEEecCCCcCc-ccc--------------CCcccHHHHHHHHHHHHHHHHH
Confidence 3567888999999 788877654432100 000 0011223445566777888888
Q ss_pred HHhhcCCc-eEEEE--ec---CChHHHHHHHHHHc
Q 044973 120 ICKDKNVK-AETLV--LT---GDPKDMICQAAEQM 148 (197)
Q Consensus 120 ~~~~~gi~-~~~~v--~~---g~~~~~I~~~a~~~ 148 (197)
.+++.|+. +-.+. .. ++..+.+.++.+..
T Consensus 166 ~a~~~Gv~~l~lE~~~~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 166 YAKRQGLSMLYVEPVPLATEFPSSAADAARLMADL 200 (316)
T ss_dssp HHHHHTCCEEEECCCSCTTBSSCSHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEEecCCccccCCCHHHHHHHHHHH
Confidence 88888988 65443 21 34456666666655
No 299
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.79 E-value=1.7e+02 Score=18.89 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=34.9
Q ss_pred HHHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 118 LQICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
...+...|+.+. ...+. .+.++..++..+|+|++...-.. ...+ .....+-. ...+|++++-..
T Consensus 23 ~~~l~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 23 NLMLEKGGFDSD---MVHSA-AQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHTTCEEE---EECSH-HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHCCCeEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 344445565532 23344 44455667778999999865332 1111 23444433 235899988653
No 300
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=21.67 E-value=2.8e+02 Score=21.38 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEEC
Q 044973 138 KDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVK 187 (197)
Q Consensus 138 ~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 187 (197)
.+.|.+..++.+.|+|+.-.....+..+...+..+....+..+.|+++..
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEec
Confidence 35567788899999999965555566666677777777888888887774
No 301
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.62 E-value=2.7e+02 Score=21.17 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCCC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPPP 190 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 190 (197)
.+..+.+.+++.|+.+......+++.. ..++.....++|-||+........ ... -..+...++||+++-...
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~-----~~~-~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 21 DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTL-----SDV-LKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGG-----HHH-HHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhH-----HHH-HHHHHHCCCCEEEECCCC
Confidence 444555666777888776655555543 344555556899999965442111 111 234567789999996543
No 302
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=21.48 E-value=1.2e+02 Score=23.35 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 139 DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 139 ~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
.++++...+.++|+|.+|-+.-..... . -.....+- +.+.|+++.+.-
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~-~-~~~v~~ir-~~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDN-V-LRMMSKVR-RFLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHH-H-HHHHHHHT-TSSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHH-H-HHHHHHhh-CcCCCEEEecCc
Confidence 456777788899999999742222221 1 13344443 367899987754
No 303
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.27 E-value=1.1e+02 Score=22.94 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=24.8
Q ss_pred CCEEEEEeCCChhhHH-HHHHHHHHhccccCCCCCCCCCCCCCEEEEEE
Q 044973 26 EMKVMVALDESGESFY-ALKWALDNLFGITGAVTPGTSDRGAGTVTLVH 73 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~-al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~ 73 (197)
.++|++++.++-...+ +++....|.+. +.+++++-
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~-------------g~eV~vv~ 40 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAE-------------GAEVRPVV 40 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHT-------------TCEEEEEE
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhC-------------CCEEEEEE
Confidence 4799999999976655 77766655444 57777663
No 304
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.18 E-value=2.2e+02 Score=19.96 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=27.9
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEe
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHV 74 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V 74 (197)
.+.+++.+..|..+...++ +++.|+. .++++.++.-
T Consensus 87 ~~d~~i~iS~sG~t~~~~~-~~~~ak~------------~g~~vi~IT~ 122 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVA-ALAGAAE------------RGVPTMALTD 122 (187)
T ss_dssp TTEEEEEECCSSCCHHHHH-HHHHHHH------------TTCCEEEEES
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHH------------CCCCEEEEeC
Confidence 4789999999998888776 5577787 6777776654
No 305
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=21.04 E-value=3.6e+02 Score=22.46 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEee
Q 044973 36 SGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQ 75 (197)
Q Consensus 36 s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~ 75 (197)
...+.+.+++|+++|+. ...+|+++|=.
T Consensus 206 r~~~eRIar~AFe~A~~------------rrkkVT~v~Ka 233 (405)
T 3r8w_A 206 AHEIDRIARVAFETARK------------RRGKLCSVDKA 233 (405)
T ss_dssp HHHHHHHHHHHHHHHHT------------TTSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHH------------cCCeEEEEECc
Confidence 35678999999999998 67889888743
No 306
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.93 E-value=3.7e+02 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHhhcCCceEEEEecCChHHH---HHHHHHHcCCCEEEEecCCCCc
Q 044973 117 ALQICKDKNVKAETLVLTGDPKDM---ICQAAEQMHMDLLVVGSRGLGK 162 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~~~~~---I~~~a~~~~~dliViG~~~~~~ 162 (197)
+.......|+++.......++... .+..+...++|+|++.+.++..
T Consensus 144 L~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 144 LLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 334444556655432222244332 2334444589999999887655
No 307
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.87 E-value=2.2e+02 Score=19.77 Aligned_cols=63 Identities=6% Similarity=-0.002 Sum_probs=33.7
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhC-CCCEEEECCC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHV-QCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 189 (197)
..+...|+.+ ....+..++ ++..+...+|+|++...-... ..+ .....+-... .+||+++-..
T Consensus 25 ~~L~~~g~~v---~~~~~~~~a-l~~~~~~~~dlvl~D~~lp~~-~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 25 RGLERRGYAV---RQAHNKDEA-LKLAGAEKFEFITVXLHLGND-SGL---SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHTTCEE---EEECSHHHH-HHHHTTSCCSEEEECSEETTE-ESH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHCCCEE---EEeCCHHHH-HHHHhhCCCCEEEEeccCCCc-cHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 3444456543 223444444 455667789999997543211 111 2344444433 4899888653
No 308
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.84 E-value=2.6e+02 Score=20.71 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+......+++.. .+++.....++|.||+....... ...+.+....++||+++-.
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-------HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-------HHHHHHHhccCCCEEEEcc
Confidence 344444555566776665433344432 34555556789988886433210 1223332236899888854
No 309
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.81 E-value=2.7e+02 Score=20.76 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChHH--HHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPKD--MICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~~--~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
.+..+.+.+++.|+.+......+++.. ..++.....++|-||+........ ....+ .+...++||+++-.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAV-----VTAIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTT-----HHHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhh-----HHHHH-HHHHCCCeEEEecC
Confidence 344444555666777655433345433 334444567899999854322111 11222 34567899998854
No 310
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=20.56 E-value=1.2e+02 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=26.5
Q ss_pred CCEEEEEeCCChhhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEE
Q 044973 26 EMKVMVALDESGESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLV 72 (197)
Q Consensus 26 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv 72 (197)
.++|++++.++-...++.+....| +. .+.+++++
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L-~~------------~g~~V~vv 41 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYF-KS------------FFKEIRVV 41 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHH-TT------------TSSEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHH-HH------------CCCEEEEE
Confidence 379999999999888888877666 44 45677666
No 311
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=20.49 E-value=1.6e+02 Score=20.47 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECCC
Q 044973 137 PKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKPP 189 (197)
Q Consensus 137 ~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 189 (197)
-.....+.-++.+.+.-++|++.-+.......-.+-+...+.++.||+++=.+
T Consensus 71 y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp 123 (141)
T 4e0q_A 71 YYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNP 123 (141)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESC
T ss_pred HHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECC
Confidence 34555666667788888998865432111111123455666778899888443
No 312
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.43 E-value=3e+02 Score=21.25 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCceEEEEecCChH--HHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEE
Q 044973 113 LLSRALQICKDKNVKAETLVLTGDPK--DMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIV 186 (197)
Q Consensus 113 ~l~~~~~~~~~~gi~~~~~v~~g~~~--~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 186 (197)
.+..+.+.+.+.|+.+.......++. ..+++.....++|-||+...... ...-..+...++|++++
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--------~~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS--------EAARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC--------HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC--------HHHHHHHHhCCCCEEEE
Confidence 45556677788888776544444443 34555566678999998643321 11233456788999988
No 313
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=20.33 E-value=3.1e+02 Score=21.39 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCCceE--EEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 111 AALLSRALQICKDKNVKAE--TLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 111 ~~~l~~~~~~~~~~gi~~~--~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
+.++.++...+...+.... ..+..| .+++....+...+-|||+...- +...- -.....+.....+|..+|+.
T Consensus 102 ~rl~~~a~~ka~gk~~~~k~p~~lk~G--vneVtKaIekgKAqLVVIA~Dv-dPiel---v~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 102 QRLVAQAEAKKDGKQVETKKPIVLKYG--LNHITTLIENKQAKLVVIAHDV-DPIEL---VIFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCEEEC--HHHHHHHHHTSCCSEEEEESCC-SSTHH---HHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHhcCCCCCCCCCceeecc--hHHHHHHHHcCCceEEEEeCCC-ChHHH---HHHHHHHHHHcCCCEEEECC
Confidence 3444555555544443322 122233 5678888888889999997544 22221 12234455677788777764
No 314
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.24 E-value=43 Score=22.49 Aligned_cols=42 Identities=2% Similarity=-0.068 Sum_probs=23.5
Q ss_pred HHHHHhhcCCceEEEEecCC-hHHHHH-HHHHHcCCCEEEEecCCC
Q 044973 117 ALQICKDKNVKAETLVLTGD-PKDMIC-QAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 117 ~~~~~~~~gi~~~~~v~~g~-~~~~I~-~~a~~~~~dliViG~~~~ 160 (197)
+.+.+++.|++++.+..... +.+.+. +.+. .+|+||+.....
T Consensus 25 LekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 25 LKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 34455566877776665432 222221 1222 699999997654
No 315
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=20.21 E-value=2.4e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHHHHHHhh-cCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCC
Q 044973 113 LLSRALQICKD-KNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGL 160 (197)
Q Consensus 113 ~l~~~~~~~~~-~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~ 160 (197)
..+.+.+.+.+ .|++++..-......+. -..+|.||+|+.-.
T Consensus 21 ~a~~i~~~l~~~~g~~v~~~~l~~~~~~~------l~~aD~ii~gsP~y 63 (188)
T 2ark_A 21 MAELVAEGARSLEGTEVRLKHVDEATKED------VLWADGLAVGSPTN 63 (188)
T ss_dssp HHHHHHHHHHTSTTEEEEEEETTTCCHHH------HHHCSEEEEEEECB
T ss_pred HHHHHHHHHhhcCCCeEEEEEhhhCCHHH------HHhCCEEEEEeCcc
Confidence 33444445555 57766654443322211 12589999998765
No 316
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.20 E-value=1.8e+02 Score=18.75 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHhh-cCCceEEEEecCChHHHHHHHHHH-cCCCEEEEecCCCCcccccccccHHHHHHh---hCCCCEEEECCC
Q 044973 119 QICKD-KNVKAETLVLTGDPKDMICQAAEQ-MHMDLLVVGSRGLGKIKRALLGSVSDYCAH---HVQCPIIIVKPP 189 (197)
Q Consensus 119 ~~~~~-~gi~~~~~v~~g~~~~~I~~~a~~-~~~dliViG~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 189 (197)
..+.. .|+.+. ...+.. +.++..++ ..+|+|++...-.+....+ .+...+-. ...+||+++-..
T Consensus 22 ~~L~~~~~~~v~---~~~~~~-~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 22 IIFDNIGEYDFI---EVENLK-KFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHHCCCEEE---EECSHH-HHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHhccCccEE---EECCHH-HHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 34444 466443 233443 44455566 7899999986543111111 23344443 345899888543
No 317
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=20.19 E-value=2.6e+02 Score=20.49 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhccccCCCCCCCCCCCCCEEEEEEeeCCCCCccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Q 044973 38 ESFYALKWALDNLFGITGAVTPGTSDRGAGTVTLVHVQQPFQHFVFPAGPGGAAFYATSSVEQSIRKAQEENSAALLSRA 117 (197)
Q Consensus 38 ~s~~al~~a~~la~~~~~~~~~~~~~~~~~~l~lv~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (197)
.+...++.++++|.. .+++..++|.-.. +... ..++..+...+.+.++
T Consensus 82 ~~~~~~~~~i~~a~~------------lG~~~v~~~~g~~------~~~~--------------~~~~~~~~~~~~l~~l 129 (260)
T 1k77_A 82 EAHADIDLALEYALA------------LNCEQVHVMAGVV------PAGE--------------DAERYRAVFIDNIRYA 129 (260)
T ss_dssp HHHHHHHHHHHHHHH------------TTCSEEECCCCBC------CTTS--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------cCCCEEEECcCCC------CCCC--------------CHHHHHHHHHHHHHHH
Confidence 345678888999999 7777665542111 0000 0234456667778888
Q ss_pred HHHHhhcCCceEEEEec-----C---ChHHHHHHHHHHcCCC
Q 044973 118 LQICKDKNVKAETLVLT-----G---DPKDMICQAAEQMHMD 151 (197)
Q Consensus 118 ~~~~~~~gi~~~~~v~~-----g---~~~~~I~~~a~~~~~d 151 (197)
...+++.|+.+-.+... + ...+.+.++.++.+.+
T Consensus 130 ~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (260)
T 1k77_A 130 ADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARD 171 (260)
T ss_dssp HHHHGGGTCEEEECCCCTTTSTTBSCCSHHHHHHHHHHHCCT
T ss_pred HHHHHHcCCEEEEEeCCccCCCcCccCCHHHHHHHHHHhCCC
Confidence 88888888876555441 1 3456677777766543
No 318
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.12 E-value=1.7e+02 Score=18.28 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHhhcCCceEEEEecCChHHHHHHHHHHcCCCEEEEecCCCCcccccccccHHHHHHhhCCCCEEEECC
Q 044973 119 QICKDKNVKAETLVLTGDPKDMICQAAEQMHMDLLVVGSRGLGKIKRALLGSVSDYCAHHVQCPIIIVKP 188 (197)
Q Consensus 119 ~~~~~~gi~~~~~v~~g~~~~~I~~~a~~~~~dliViG~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 188 (197)
..+...|..+. ...+.. +..+..+...+|++++...-.+. ... .....+-....+|++++-.
T Consensus 21 ~~l~~~~~~v~---~~~~~~-~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~ii~~s~ 82 (123)
T 1xhf_A 21 SIFEAEGYDVF---EATDGA-EMHQILSEYDINLVIMDINLPGK-NGL---LLARELREQANVALMFLTG 82 (123)
T ss_dssp HHHHTTTCEEE---EESSHH-HHHHHHHHSCCSEEEECSSCSSS-CHH---HHHHHHHHHCCCEEEEEES
T ss_pred HHHhhCCcEEE---EeCCHH-HHHHHHhcCCCCEEEEcCCCCCC-CHH---HHHHHHHhCCCCcEEEEEC
Confidence 33444455432 234444 44455667789999998654321 111 2344444445688888754
Done!