BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044974
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
           Bacillus Subtilis Seca
 pdb|3DL8|H Chain H, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
           Bacillus Subtilis Seca
          Length = 429

 Score = 29.6 bits (65), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 71  PLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAY--- 127
           P + AS  M  L+VAI  ++ L   EGD  +G   ++       +F  +V  L  A+   
Sbjct: 79  PYISASIMMQLLTVAIPSLQRLAKEEGD--YGRYKINEYTKYLTLFVATVQSLGIAFWIR 136

Query: 128 ------GAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSF 175
                 G  V+     SF+L  ++T++     L+++  R     + N  S+  F
Sbjct: 137 GQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIF 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,950,105
Number of Sequences: 62578
Number of extensions: 169525
Number of successful extensions: 282
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 1
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)