BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044974
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 126/178 (70%)
Query: 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
S PL L + + TAYS LPFLRWK ++ +AA+C++ + ++ Q+ FF H+Q ++
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273
Query: 64 RPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123
RP T+PL+FA+AFMT SV IA KD+ D+EGDR GI++ SV LG++KVFW+ V +L
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333
Query: 124 STAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
AY A+L+GA+S+ L SK T++GHA L LW+R+R++DL++ +I SFYMFIW+
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 121/176 (68%)
Query: 6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
PL + + TAYS LP LRWK + +AA+C++ + ++ Q+ F+ H+Q ++ GRP
Sbjct: 205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264
Query: 66 MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
+ T+PL+FA+AFM+ SV IA KD+ D+EGD+ GI++ SV LG+++VFW V +L
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324
Query: 126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
AY A+LVGA+S F+ SK+++++GH L LW RA++VDLS+ I S YMFIW+
Sbjct: 325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 114/181 (62%)
Query: 1 MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
++ S PL V +++AY+ LP LRWK L A+ + + + FF H+Q
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276
Query: 61 LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+ RP +PL+F +A ++ ++ IA KD+ D+EGD + GIQ+LS+ LG ++VFW+ V
Sbjct: 277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336
Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
+L YG +LVGA+S L SK++T++GHA L LW+ A++VDL++N + SFYMFIW
Sbjct: 337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396
Query: 181 Q 181
+
Sbjct: 397 K 397
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%)
Query: 6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
PL+ ++ TAYS +P LRWK F+AA+CM+ L + +F H+Q +L RP
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280
Query: 66 MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
+ + L F AFMT S+ +A KD+ DVEGD+EHGI + +V LG+++ FW+ V
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340
Query: 126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
A+G +L GAS S +K+ T +G+A L LW++A++VDLS+ S SFYMFIW+
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 5/169 (2%)
Query: 15 LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF 74
LF+ T YS +P LR K A + + + G L + H + LG P + + P+ F
Sbjct: 209 LFLGTIYS--VPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAF 265
Query: 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134
++F+T ++ IA KDL DVEGDR+ I TL+ LG + +L +L Y +A+ +
Sbjct: 266 ITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLA 325
Query: 135 ASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN--NESIFSFYMFIWQ 181
+ + I H L L + ++ +N E+I +Y FIW
Sbjct: 326 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWN 374
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Query: 15 LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF 74
LF+ T YS +P R K A + + + G L ++ + LG + + P+ F
Sbjct: 202 LFLGTIYS--VPPFRLKRYPVAAFLIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAF 258
Query: 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134
+ F+T ++ IA KDL DVEGDR++ I TL+ LG + +L +L Y AA+ V
Sbjct: 259 ITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVA 318
Query: 135 ASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN--NESIFSFYMFIWQ 181
+ V + HA L + + + ++ + ++I +Y FIW
Sbjct: 319 FLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWN 367
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFW 117
A C ++A VKD+ D++GDR G++TL +++G+ + +
Sbjct: 162 ALAACATMAREIVKDVEDIDGDRAEGLRTLPIVIGERRSLY 202
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLL 141
++VA VKD+ DVEGD + G +TL ++LG+ K +++ + +G A ++ +SFL
Sbjct: 166 VNVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVAAF-----FGVATVI---ASFLP 217
Query: 142 SKLVTIIGH 150
K +G+
Sbjct: 218 VKAGVGVGY 226
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 16 FISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFA 75
F+ Y+A+L L GN + + ++ G F F L P IT L
Sbjct: 112 FVLIIYAARLKGLPVAGN-----IAISYLTG----TTFLF---GGLAASPSSITAFLSIL 159
Query: 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTA--------- 126
SA T LS I VKD+ D+ GD HG +TL +GK K F L+ +L A
Sbjct: 160 SALAT-LSREI--VKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVAMLLSYLVPL 216
Query: 127 ---YGAAVLVGASSSFLLSKLVTIIGHAT 152
Y AAV + A+ +FLLS + G A+
Sbjct: 217 GIDYQAAVSI-ANLAFLLSIKRMLCGDAS 244
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLL 141
++V+ +KD+ D+EGD + G +TL +++GK + M+S+ +G ++ +SFL
Sbjct: 166 VNVSREIMKDIEDIEGDMKMGAKTLPIIIGKRR-----AAMISSIFGVLTVI---TSFLP 217
Query: 142 SKLVTIIGHATLLL 155
K+ +G+A ++L
Sbjct: 218 VKVGIGLGYAPIIL 231
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWL 118
FVK + D+EGD+ +G+ TL+V LG EK W+
Sbjct: 172 FVKGIEDIEGDKRNGVNTLAVKLG-EKSTWI 201
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 79 MTCL----SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+TCL + IA V D +EGDR G+Q+L V G E W+ V
Sbjct: 260 LTCLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICV 305
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 8 VLGVIAW--LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
+LGVIA+ +FI Y+ +L L + GN + + GL P + V LG
Sbjct: 108 ILGVIAYVTMFI---YAWKLKPLPFVGN--------IVVAGLTGATPLYGAVAVEHLG-- 154
Query: 66 MEITKPLMFASAFMTC---LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
A C ++VA +KD+ DVEGD G +TL ++ GK++ ++ V
Sbjct: 155 --------LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGV 204
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 80 TCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSF 139
T ++A VKD+ D+ GD++ G +TL +++G +K + ++ A+G ++ + +
Sbjct: 172 TLATIAREIVKDVEDIVGDKKDGARTLPILIGAKKASY-----IAAAFGFTAMLASPVPY 226
Query: 140 LLSKL------VTIIGHATLLLFLWHRARNVDLSNNESIFSFYM 177
L S L V I L+ ++ D + + +F F M
Sbjct: 227 LQSILNEQYLFVVAIADIFFLIAVYQILGKKDAARSSKLFKFAM 270
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 68 ITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+T ++ ++ + + IA V D VEGDR G+Q+L V G E W+ V
Sbjct: 251 LTPDIVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICV 303
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEK 114
+KD D+EGDR HG TL++ +G K
Sbjct: 173 LKDAEDIEGDRAHGADTLAIRIGVRK 198
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLS 119
FVK + DV+GD +G++TL+V +G EK +++S
Sbjct: 175 FVKGIEDVKGDMTNGVKTLAVRVGIEKTWFIS 206
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+ IA V D VEGDR G+Q+L V G E W+ V
Sbjct: 278 LGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICV 314
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 69 TKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTA 126
K ++F+S T ++ FVK + D+ GDR HG++T++V +G ++ L V++LS A
Sbjct: 154 NKVIIFSSVAFTS-NLIREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGIL-VFLLSLA 209
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL 132
+KD+ D++GDR+ G+QTL +++G + ++ +L A A+++
Sbjct: 180 IIKDIEDLDGDRKEGLQTLPIVIGVTPAYRVATGVLLVAVIASIV 224
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEK 114
AF+ +S I +KD+ D EGD+ G +TL +M+GK+K
Sbjct: 163 AFLVNVSREI--MKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKE 113
I + D +EGDR+HG+++L VMLG E
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVMLGPE 218
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLS 119
++VA +KD+ D+EGD G +TL +++G+++ ++
Sbjct: 166 VNVAREVIKDIEDIEGDMAKGAKTLPILIGRKRAAYVG 203
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
AF+ LS I +KD+ D+EGD++ TL ++ G +K L+V
Sbjct: 158 AFLMTLSREI--IKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 29 RWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAF 88
++KG FL + + ++ G + F +L+G + +FA F L A
Sbjct: 121 KFKGIPFLGNLSVAYLSGSI------FLFGGFLVGPESFLVMLPLFAITFFGTL--AREL 172
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+KD D+EGDR G +TL + +G K L+V
Sbjct: 173 LKDAEDIEGDRLGGARTLPMQIGVRKTSVLAV 204
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
VKD+ D+EGD G TL + +G +K +L+V
Sbjct: 189 VKDIEDMEGDSLEGADTLPLRIGAKKAGYLAV 220
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEK 114
++V+ +KD+ D+EGD+ G +TL +++G++K
Sbjct: 166 VNVSREIMKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLS 119
VKD+ D+EGD+ G TL + +G +K +L+
Sbjct: 189 VKDIEDMEGDKMEGADTLPLRVGAKKASYLA 219
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
VKD+ D+EGDR TL + +G +K +L+V
Sbjct: 189 VKDIEDMEGDRLEDADTLPLRIGAKKAGYLAV 220
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCM-VFMCGLLPQVPFFFHVQKYLLGRPME 67
G++A LF+ S QL WK L+A+ + +F+CGLLP + H+ +L G
Sbjct: 696 FGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSG---- 751
Query: 68 ITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLG--KEKVFWLSVY 121
L+ A AF+ ++ + D R + +L V G V WL VY
Sbjct: 752 ----LLLAFAFLPYITFGTS------DKYRKRALILVSLLVFAGLFASLVIWLYVY 797
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCM-VFMCGLLPQVPFFFHVQKYLLGRPME 67
G++A LF+ S QL WK L+A+ + +F+CGLLP + H+ +L G
Sbjct: 696 FGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFLSG---- 751
Query: 68 ITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLG--KEKVFWLSVY 121
++ A AF+ ++ + D R + +L V G V WL +Y
Sbjct: 752 ----MLLAFAFLPYITFGTS------DKYRKRALILVSLLVFAGLFASLVLWLYIY 797
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFW 117
VKD D+EGD++ G+ +L + GK+ +++
Sbjct: 178 VKDFEDMEGDKKEGVISLPIKYGKKSLYF 206
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLG 111
+++A VKD+ DVEGDR G TL + G
Sbjct: 161 MTMAREIVKDMEDVEGDRAEGATTLPITHG 190
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVF 116
+KD+ D+ GDR G++TL V++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVF 116
+KD+ D+ GDR G++TL V++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKE 113
++VA KD+ D+EGD+ G +TL ++ G E
Sbjct: 166 VNVAREIFKDIEDIEGDKAQGAKTLPIVWGIE 197
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 89 VKDLHDVEGDREHGIQTLSVMLGKEKVF 116
+KD D++GD+ G+ +L + GK +F
Sbjct: 175 IKDYEDLDGDKSEGVISLPIKYGKNSIF 202
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 725 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISG 780
>sp|Q2FN44|DGGGP_METHJ Digeranylgeranylglyceryl phosphate synthase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_0625 PE=3 SV=1
Length = 280
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
+KD D+ GD EHG +T ++ G +L++
Sbjct: 173 LIKDAEDMPGDNEHGARTFPLLYGIRATIYLAL 205
>sp|P32166|MENA_ECOLI 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Escherichia
coli (strain K12) GN=menA PE=1 SV=1
Length = 308
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGK 112
L+ A+ + +L D+ DRE+G TL V LG+
Sbjct: 192 LATAVLNINNLRDINSDRENGKNTLVVRLGE 222
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 724 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISG 779
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 724 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISG 779
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 724 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISG 779
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 724 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISG 779
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCM-VFMCGLLPQVPFFFHVQKYLLGRPME 67
G++A LF+ S L WK L+A+ + +F+CGLLP + H+ +L G
Sbjct: 725 FGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSG---- 780
Query: 68 ITKPLMFASAFM 79
L+ A AF+
Sbjct: 781 ----LLLAFAFL 788
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKG-NSFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ L V +F GLLP + F H+ ++ G
Sbjct: 726 FGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISG 781
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 725 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSG 780
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 9 LGVIAWLFISTAYSAQLPFLRWKGN-SFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
G++A LF+ S Q+ W+ LA V +F GLLP + F H+ ++ G
Sbjct: 725 FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSG 780
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGK 112
+KDL DVEGD G++TL + G+
Sbjct: 168 ILKDLEDVEGDAALGLKTLPIAYGE 192
>sp|A2BIU7|DGGGP_HYPBU Digeranylgeranylglyceryl phosphate synthase OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0025 PE=3
SV=1
Length = 302
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLS 119
FVK + DV+GD GI TL+V G + S
Sbjct: 191 FVKGIEDVKGDAIAGIGTLAVRFGVRTAYMAS 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,790,277
Number of Sequences: 539616
Number of extensions: 2292828
Number of successful extensions: 6111
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6070
Number of HSP's gapped (non-prelim): 61
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)