Query 044974
Match_columns 182
No_of_seqs 184 out of 908
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 6.5E-41 1.4E-45 279.9 19.8 181 2-182 88-268 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 4.3E-37 9.4E-42 262.2 20.3 177 3-182 118-294 (308)
3 PRK05951 ubiA prenyltransferas 99.9 1.4E-20 3E-25 159.8 18.2 165 3-178 114-278 (296)
4 PRK12872 ubiA prenyltransferas 99.9 1.1E-20 2.4E-25 158.9 16.9 157 3-171 102-259 (285)
5 PRK12392 bacteriochlorophyll c 99.9 1E-20 2.2E-25 162.9 16.5 153 5-170 125-278 (331)
6 PRK13105 ubiA prenyltransferas 99.9 1.6E-20 3.4E-25 158.5 16.8 122 3-134 103-224 (282)
7 TIGR02235 menA_cyano-plnt 1,4- 99.9 2.3E-20 4.9E-25 157.9 17.8 124 3-136 104-227 (285)
8 PRK07419 1,4-dihydroxy-2-napht 99.9 2.2E-20 4.9E-25 159.2 16.8 124 3-136 117-240 (304)
9 PLN02922 prenyltransferase 99.9 2.8E-20 6E-25 159.3 17.2 130 3-136 121-254 (315)
10 TIGR02056 ChlG chlorophyll syn 99.8 1.3E-19 2.8E-24 154.6 18.1 120 4-133 127-246 (306)
11 TIGR00751 menA 1,4-dihydroxy-2 99.8 1.1E-19 2.4E-24 153.6 16.7 120 6-135 110-229 (284)
12 PRK12895 ubiA prenyltransferas 99.8 3.7E-19 8.1E-24 150.5 18.5 138 29-176 124-262 (286)
13 PRK12888 ubiA prenyltransferas 99.8 4.1E-19 8.9E-24 150.2 18.2 150 10-176 113-263 (284)
14 PRK06080 1,4-dihydroxy-2-napht 99.8 2.8E-19 6.2E-24 151.2 17.2 124 4-137 112-235 (293)
15 PRK13387 1,4-dihydroxy-2-napht 99.8 1.2E-19 2.6E-24 155.5 14.7 130 3-136 112-255 (317)
16 TIGR01476 chlor_syn_BchG bacte 99.8 1.5E-19 3.2E-24 152.3 14.8 123 3-135 104-226 (283)
17 PLN00012 chlorophyll synthetas 99.8 1.5E-18 3.3E-23 151.6 17.8 118 4-131 196-313 (375)
18 PRK07566 bacteriochlorophyll/c 99.8 1.5E-18 3.3E-23 148.5 17.0 121 4-132 131-251 (314)
19 PRK13106 ubiA prenyltransferas 99.8 1.6E-18 3.5E-23 147.5 17.0 152 12-179 125-281 (300)
20 PRK13595 ubiA prenyltransferas 99.8 1.2E-18 2.5E-23 147.4 15.7 117 4-134 117-233 (292)
21 TIGR01475 ubiA_other putative 99.8 5.7E-18 1.2E-22 142.7 18.3 151 9-174 109-259 (282)
22 PRK12884 ubiA prenyltransferas 99.8 4.5E-18 9.7E-23 142.9 17.6 155 4-175 103-258 (279)
23 COG1575 MenA 1,4-dihydroxy-2-n 99.8 3.7E-18 7.9E-23 144.2 15.7 127 3-139 119-245 (303)
24 PLN02809 4-hydroxybenzoate non 99.8 1E-17 2.2E-22 142.0 18.3 153 6-176 115-268 (289)
25 PRK12876 ubiA prenyltransferas 99.8 2.4E-17 5.3E-22 140.1 19.2 153 10-177 121-279 (300)
26 COG0382 UbiA 4-hydroxybenzoate 99.8 2.8E-17 6E-22 139.0 18.0 157 5-178 116-272 (289)
27 PRK12882 ubiA prenyltransferas 99.8 4.1E-17 8.8E-22 137.1 18.7 157 5-177 105-262 (276)
28 TIGR01474 ubiA_proteo 4-hydrox 99.8 8.6E-17 1.9E-21 135.7 17.7 156 4-177 108-263 (281)
29 PRK12886 ubiA prenyltransferas 99.7 1.2E-16 2.7E-21 135.5 18.4 153 5-174 111-264 (291)
30 PRK13591 ubiA prenyltransferas 99.7 4.3E-17 9.3E-22 138.6 15.1 118 10-136 124-245 (307)
31 PRK12847 ubiA 4-hydroxybenzoat 99.7 1.5E-16 3.2E-21 134.4 17.4 154 4-175 113-266 (285)
32 PRK12874 ubiA prenyltransferas 99.7 2.3E-16 5.1E-21 133.8 18.6 148 12-176 123-270 (291)
33 PRK12870 ubiA 4-hydroxybenzoat 99.7 1E-16 2.2E-21 135.9 15.5 151 8-176 118-270 (290)
34 PRK12875 ubiA prenyltransferas 99.7 1.2E-16 2.7E-21 135.0 15.9 115 8-135 116-230 (282)
35 PRK09573 (S)-2,3-di-O-geranylg 99.7 2.7E-16 5.9E-21 132.3 17.6 150 4-171 103-253 (279)
36 PF01040 UbiA: UbiA prenyltran 99.7 2.9E-16 6.2E-21 128.8 16.0 157 4-177 91-247 (257)
37 PRK12848 ubiA 4-hydroxybenzoat 99.7 8E-16 1.7E-20 129.8 17.5 152 5-174 111-262 (282)
38 PRK12878 ubiA 4-hydroxybenzoat 99.7 1.3E-15 2.8E-20 130.6 17.8 156 4-177 140-295 (314)
39 PRK12873 ubiA prenyltransferas 99.7 1.6E-15 3.4E-20 128.8 17.1 153 12-180 124-279 (294)
40 PRK12883 ubiA prenyltransferas 99.6 9.5E-15 2E-19 122.8 16.6 147 4-169 103-249 (277)
41 TIGR01473 cyoE_ctaB protoheme 99.6 8.3E-14 1.8E-18 117.3 17.4 159 4-178 104-266 (280)
42 PRK12869 ubiA protoheme IX far 99.6 3.5E-13 7.5E-18 113.7 17.5 151 13-180 115-267 (279)
43 PRK04375 protoheme IX farnesyl 99.5 5E-13 1.1E-17 113.6 16.6 147 17-179 127-275 (296)
44 PRK12871 ubiA prenyltransferas 99.5 7.1E-13 1.5E-17 112.9 17.1 148 5-172 123-273 (297)
45 PRK13362 protoheme IX farnesyl 99.2 1.3E-09 2.9E-14 93.2 17.1 130 17-162 130-259 (306)
46 PRK13592 ubiA prenyltransferas 99.2 9.6E-10 2.1E-14 93.3 14.6 114 12-133 115-236 (299)
47 PLN02776 prenyltransferase 98.9 1.3E-07 2.8E-12 82.0 18.4 140 18-174 113-254 (341)
48 KOG1381 Para-hydroxybenzoate-p 97.9 6.3E-05 1.4E-09 63.3 7.8 94 79-176 233-326 (353)
49 KOG4581 Predicted membrane pro 97.2 6E-05 1.3E-09 62.2 -1.1 60 78-137 237-296 (359)
50 COG0109 CyoE Polyprenyltransfe 96.9 0.017 3.6E-07 49.5 10.9 141 19-175 137-279 (304)
51 PRK12884 ubiA prenyltransferas 95.4 0.25 5.4E-06 41.4 10.8 52 77-129 44-98 (279)
52 TIGR02056 ChlG chlorophyll syn 94.9 0.3 6.4E-06 41.8 9.9 56 77-132 61-118 (306)
53 PRK12324 phosphoribose diphosp 94.7 0.87 1.9E-05 39.0 12.3 38 5-47 115-152 (295)
54 PRK08238 hypothetical protein; 94.4 1.2 2.5E-05 40.7 13.0 84 4-103 294-377 (479)
55 PRK12324 phosphoribose diphosp 94.2 0.49 1.1E-05 40.5 9.5 51 80-130 56-110 (295)
56 PRK13592 ubiA prenyltransferas 93.3 1.2 2.5E-05 38.3 10.2 52 77-128 53-106 (299)
57 PRK13595 ubiA prenyltransferas 93.3 1.3 2.8E-05 37.9 10.5 56 77-132 54-111 (292)
58 PF01040 UbiA: UbiA prenyltran 93.2 0.85 1.9E-05 36.9 9.2 32 81-112 34-66 (257)
59 COG0382 UbiA 4-hydroxybenzoate 93.0 0.9 2E-05 38.3 9.2 55 76-130 53-111 (289)
60 PRK12872 ubiA prenyltransferas 92.9 1.4 3E-05 36.9 10.2 32 76-107 42-74 (285)
61 TIGR01475 ubiA_other putative 92.8 1.1 2.3E-05 37.8 9.3 46 77-122 43-92 (282)
62 PRK12882 ubiA prenyltransferas 92.5 1.1 2.4E-05 37.5 9.0 52 78-129 46-99 (276)
63 PRK09573 (S)-2,3-di-O-geranylg 92.5 1.8 3.9E-05 36.3 10.3 54 77-130 44-99 (279)
64 PRK12887 ubiA tocopherol phyty 91.7 1.9 4.2E-05 37.0 9.7 40 89-129 72-114 (308)
65 PRK12392 bacteriochlorophyll c 91.3 1.6 3.5E-05 37.9 8.8 49 86-134 66-116 (331)
66 PRK12847 ubiA 4-hydroxybenzoat 90.7 1.7 3.7E-05 36.6 8.3 48 80-127 55-106 (285)
67 PLN02809 4-hydroxybenzoate non 90.6 3 6.5E-05 35.5 9.8 50 78-127 53-106 (289)
68 PRK12875 ubiA prenyltransferas 89.9 2.7 5.9E-05 35.7 8.9 19 87-105 62-80 (282)
69 PRK12883 ubiA prenyltransferas 89.9 2.8 6.1E-05 35.0 9.0 45 82-127 49-96 (277)
70 PRK12871 ubiA prenyltransferas 89.8 4 8.6E-05 34.9 9.9 47 83-130 55-114 (297)
71 PRK13591 ubiA prenyltransferas 89.8 4.3 9.3E-05 35.0 10.0 45 82-132 70-114 (307)
72 TIGR01474 ubiA_proteo 4-hydrox 89.2 2.6 5.7E-05 35.5 8.3 50 80-129 50-103 (281)
73 PRK05951 ubiA prenyltransferas 89.1 4.2 9E-05 34.6 9.5 55 78-132 48-109 (296)
74 TIGR01476 chlor_syn_BchG bacte 89.0 1.5 3.2E-05 36.9 6.6 49 81-129 49-99 (283)
75 PRK08238 hypothetical protein; 88.2 3.5 7.6E-05 37.6 8.9 53 79-131 235-291 (479)
76 PRK12873 ubiA prenyltransferas 88.2 3.9 8.5E-05 35.0 8.7 53 77-129 51-107 (294)
77 PRK12870 ubiA 4-hydroxybenzoat 88.1 3.4 7.3E-05 35.1 8.3 51 79-129 55-109 (290)
78 PRK07566 bacteriochlorophyll/c 87.8 3.3 7.2E-05 35.5 8.1 48 82-129 77-126 (314)
79 PRK12869 ubiA protoheme IX far 87.2 4.2 9E-05 34.2 8.2 53 78-130 44-100 (279)
80 PLN00012 chlorophyll synthetas 87.1 7.1 0.00015 34.5 9.9 48 81-128 134-183 (375)
81 PRK06080 1,4-dihydroxy-2-napht 86.0 7.8 0.00017 32.6 9.4 56 77-132 45-106 (293)
82 TIGR01473 cyoE_ctaB protoheme 85.7 6.5 0.00014 32.9 8.6 51 78-128 43-97 (280)
83 PRK04375 protoheme IX farnesyl 85.5 6.3 0.00014 33.4 8.6 52 78-129 52-107 (296)
84 PRK12848 ubiA 4-hydroxybenzoat 85.4 6.7 0.00014 33.0 8.6 48 81-128 53-104 (282)
85 PRK13106 ubiA prenyltransferas 85.2 11 0.00023 32.3 9.8 43 77-119 56-102 (300)
86 PRK13362 protoheme IX farnesyl 85.0 5.9 0.00013 34.0 8.2 51 78-128 55-109 (306)
87 PRK11383 hypothetical protein; 83.5 11 0.00025 28.8 8.2 86 7-99 44-132 (145)
88 PRK13387 1,4-dihydroxy-2-napht 83.0 13 0.00028 32.0 9.5 77 80-160 49-131 (317)
89 TIGR00751 menA 1,4-dihydroxy-2 82.7 17 0.00036 30.9 9.9 84 78-161 36-127 (284)
90 PRK12886 ubiA prenyltransferas 82.4 18 0.00038 30.7 10.0 41 78-118 50-94 (291)
91 TIGR02235 menA_cyano-plnt 1,4- 82.1 17 0.00037 30.8 9.8 87 68-159 32-122 (285)
92 PRK12874 ubiA prenyltransferas 81.9 17 0.00037 30.8 9.7 42 82-123 59-104 (291)
93 PRK12895 ubiA prenyltransferas 81.8 5.7 0.00012 33.8 6.7 51 79-129 46-100 (286)
94 PRK12876 ubiA prenyltransferas 81.6 12 0.00026 32.2 8.6 45 76-120 53-101 (300)
95 PLN02776 prenyltransferase 81.1 18 0.00039 31.7 9.7 51 77-127 36-90 (341)
96 PRK07419 1,4-dihydroxy-2-napht 80.9 14 0.0003 31.7 8.9 67 68-135 45-115 (304)
97 PRK12878 ubiA 4-hydroxybenzoat 79.3 15 0.00033 31.5 8.6 49 77-125 79-131 (314)
98 cd00867 Trans_IPPS Trans-Isopr 78.2 2.1 4.5E-05 34.4 2.9 37 82-118 158-204 (236)
99 PRK12888 ubiA prenyltransferas 75.8 22 0.00048 30.0 8.6 45 77-121 46-94 (284)
100 PRK10581 geranyltranstransfera 74.8 3.6 7.9E-05 35.1 3.5 49 78-126 211-270 (299)
101 PRK13105 ubiA prenyltransferas 68.4 46 0.001 28.2 8.8 21 87-107 51-71 (282)
102 PRK06099 F0F1 ATP synthase sub 67.3 51 0.0011 24.7 8.4 31 143-177 45-75 (126)
103 PLN02878 homogentisate phytylt 67.2 31 0.00066 29.5 7.4 41 87-128 40-83 (280)
104 PLN02922 prenyltransferase 65.4 78 0.0017 27.2 9.7 30 68-97 48-78 (315)
105 PF06645 SPC12: Microsomal sig 58.9 51 0.0011 22.3 6.0 28 111-138 5-32 (76)
106 PF00348 polyprenyl_synt: Poly 54.0 11 0.00025 31.1 2.6 42 78-119 174-226 (260)
107 COG0142 IspA Geranylgeranyl py 53.3 9.4 0.0002 32.9 2.0 36 82-117 206-252 (322)
108 PF00348 polyprenyl_synt: Poly 53.3 1.3E+02 0.0027 24.8 8.7 59 73-132 36-94 (260)
109 CHL00151 preA prenyl transfera 52.4 8.8 0.00019 33.0 1.7 34 81-114 206-250 (323)
110 TIGR02748 GerC3_HepT heptapren 51.3 12 0.00026 32.1 2.4 35 80-114 200-245 (319)
111 COG0109 CyoE Polyprenyltransfe 48.1 1.8E+02 0.004 25.1 9.8 62 69-130 50-116 (304)
112 TIGR02749 prenyl_cyano solanes 46.5 21 0.00045 30.8 3.1 35 80-114 204-249 (322)
113 cd00385 Isoprenoid_Biosyn_C1 I 45.7 15 0.00033 28.2 2.0 33 82-114 152-186 (243)
114 cd00685 Trans_IPPS_HT Trans-Is 43.7 21 0.00045 29.4 2.6 32 81-112 180-222 (259)
115 COG0142 IspA Geranylgeranyl py 38.4 1E+02 0.0023 26.4 6.2 58 73-131 69-126 (322)
116 COG1575 MenA 1,4-dihydroxy-2-n 37.6 2.3E+02 0.005 24.5 8.0 51 81-131 55-111 (303)
117 PLN02890 geranyl diphosphate s 37.0 24 0.00053 31.8 2.1 33 78-110 296-339 (422)
118 cd00685 Trans_IPPS_HT Trans-Is 37.0 1E+02 0.0022 25.3 5.7 55 75-130 44-98 (259)
119 TIGR02748 GerC3_HepT heptapren 34.9 86 0.0019 26.9 5.1 52 76-128 69-120 (319)
120 PF15169 DUF4564: Domain of un 33.0 11 0.00024 30.1 -0.6 31 78-108 52-82 (187)
121 PLN02857 octaprenyl-diphosphat 32.0 30 0.00065 31.1 1.9 37 78-114 296-343 (416)
122 TIGR00886 2A0108 nitrite extru 30.9 3E+02 0.0065 22.6 7.8 21 109-129 63-83 (366)
123 PRK12768 CysZ-like protein; Re 29.3 2.3E+02 0.005 23.5 6.6 41 85-125 160-200 (240)
124 PRK10888 octaprenyl diphosphat 29.2 58 0.0013 28.1 3.1 37 78-114 199-246 (323)
125 PRK04949 putative sulfate tran 28.3 3.5E+02 0.0075 22.5 8.6 35 85-119 174-209 (251)
126 cd00867 Trans_IPPS Trans-Isopr 27.3 2.7E+02 0.0059 21.9 6.6 50 77-127 25-75 (236)
127 smart00279 HhH2 Helix-hairpin- 27.3 38 0.00083 19.5 1.2 30 89-119 4-33 (36)
128 KOG4016 Synaptic vesicle prote 26.5 3.7E+02 0.008 22.2 8.8 84 16-100 86-175 (233)
129 PF01148 CTP_transf_1: Cytidyl 26.2 1.6E+02 0.0034 23.5 5.1 48 87-135 139-186 (259)
130 PRK05760 F0F1 ATP synthase sub 25.9 2.7E+02 0.0059 20.5 7.9 32 144-177 42-73 (124)
131 PF07062 Clc-like: Clc-like; 22.0 2.7E+02 0.0058 22.7 5.6 47 90-136 81-127 (211)
132 TIGR02749 prenyl_cyano solanes 21.8 3.3E+02 0.0072 23.3 6.4 53 76-129 73-125 (322)
133 KOG4112 Signal peptidase subun 20.3 3.4E+02 0.0073 19.5 7.0 46 110-156 19-64 (101)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=6.5e-41 Score=279.92 Aligned_cols=181 Identities=51% Similarity=0.895 Sum_probs=168.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974 2 LQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC 81 (182)
Q Consensus 2 ~~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 81 (182)
.|++|++.++..+.+++++||.++||+|+|++|++++.|+....+...++|+|.|+|+.++|.+...+.+.++..+++++
T Consensus 88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~ 167 (280)
T PLN02878 88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF 167 (280)
T ss_pred HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence 46678999999999999999977799999999999999988888888899999999999999766666777777779999
Q ss_pred HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA 161 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (182)
+..+++++||+||+||||++|+||+|+++|+|++.+++..++.++|+..+.++..++..++..++.+||++++..+|+|.
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs 247 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA 247 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888878899999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHhhcC
Q 044974 162 RNVDLSNNESIFSFYMFIWQA 182 (182)
Q Consensus 162 ~~v~~~~~~~~~~~y~~~w~~ 182 (182)
+.+|.+++++++||||||||+
T Consensus 248 ~~vD~~sk~~i~~fY~fiwkl 268 (280)
T PLN02878 248 QSVDLSSKAAITSFYMFIWKL 268 (280)
T ss_pred HhcCcccHHHHHHHHHHHHHH
Confidence 999999999999999999995
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=4.3e-37 Score=262.18 Aligned_cols=177 Identities=37% Similarity=0.612 Sum_probs=158.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
.|++.+..+.++.+++++|| .||+|+||+|+.++++++..+|.+..+|.+.|.+.. .+....++.+.++.+++++++
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 194 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVF 194 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHH
Confidence 46888888999999999999 999999999999999999999988888888876543 333334567777888899999
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR 162 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (182)
+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++..+|+..+..+......++..++.++|++++..+++|.+
T Consensus 195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK12887 195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ 274 (308)
T ss_pred HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988877766667677777999999999999999
Q ss_pred hcCCCChhHHHHHHHHhhcC
Q 044974 163 NVDLSNNESIFSFYMFIWQA 182 (182)
Q Consensus 163 ~v~~~~~~~~~~~y~~~w~~ 182 (182)
.+|.+|++|++||||||||+
T Consensus 275 ~~~~~~~~~~~~~y~~iw~l 294 (308)
T PRK12887 275 RVDLQDKQAIAQFYQFIWKL 294 (308)
T ss_pred hcCcccchHHHHHHHHHHHH
Confidence 99999999999999999995
No 3
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=1.4e-20 Score=159.83 Aligned_cols=165 Identities=17% Similarity=0.227 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
.+++.+...+++.++++.|| .||+++|++| +|++.+++.+|....++.++. |+. .++++.+..+....++
T Consensus 114 ~~~~~l~l~~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~------~~~~~~~~~sl~~~l~ 183 (296)
T PRK05951 114 RGIGAVTLALLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLG------NLSSPNLLAGVPLGLL 183 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhC------cccHHHHHHHHHHHHH
Confidence 45677778889999999999 9999999998 899999999998877777652 432 2456677778888888
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR 162 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (182)
+..+...||+||+|+||++|+||+|+++|+|++ +++..+...+|+..+........++....++++.-.....+.++++
T Consensus 184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~ 262 (296)
T PRK05951 184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLR 262 (296)
T ss_pred HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 7777777777776665544332333345666777777777888888
Q ss_pred hcCCCChhHHHHHHHH
Q 044974 163 NVDLSNNESIFSFYMF 178 (182)
Q Consensus 163 ~v~~~~~~~~~~~y~~ 178 (182)
..|.++.+.+...++.
T Consensus 263 ~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 263 KFPPDPDEATVQLFML 278 (296)
T ss_pred hCcccccHHHHHHHHH
Confidence 8887777777776654
No 4
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=1.1e-20 Score=158.86 Aligned_cols=157 Identities=21% Similarity=0.290 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCch-hhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFL-RWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC 81 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~-rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 81 (182)
++|+.+..+.++.++++.|| .||. |+|+.|..+|++++..+|..+.++.+.+ ++ ..++.+....+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~-~~------~~~~~~~~~~~~~~fl 172 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY-YQ------LTIFSLLLLYAVFIFL 172 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh-cc------cccchHHHHHHHHHHH
Confidence 47888888889999999999 7766 6999999999999999997766554432 11 1134555666777778
Q ss_pred HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA 161 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (182)
++.+++++||+||+|+||++|+||+|+++|+|++++++..++..+++.++........ ...+.....+....+.++|
T Consensus 173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 249 (285)
T PRK12872 173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLL---PLLLLVLLLLLAYVLYYII 249 (285)
T ss_pred HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHh---hHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999888865444322 2334444445556677777
Q ss_pred hhcCCCChhH
Q 044974 162 RNVDLSNNES 171 (182)
Q Consensus 162 ~~v~~~~~~~ 171 (182)
+..+++|++.
T Consensus 250 ~~~~~~~~~~ 259 (285)
T PRK12872 250 KLFAADDKKD 259 (285)
T ss_pred HHHhcccccc
Confidence 7776666544
No 5
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.86 E-value=1e-20 Score=162.92 Aligned_cols=153 Identities=22% Similarity=0.358 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV 84 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 84 (182)
++++..++++++++++|| .||+|+||+++.+++.+++.++.....+.. ...|. .+++.+.+....++++.
T Consensus 125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~ 194 (331)
T PRK12392 125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAI 194 (331)
T ss_pred HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHH
Confidence 445555678899999999 999999999998999888888755443321 22333 45666667778888999
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh-
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN- 163 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 163 (182)
+++++||+||+|+||+.|+||+|+++|+|++.+++...+.++.+..+..+...... ..++....+++..+.+|.+.
T Consensus 195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888878887777766665553 34444455555555555543
Q ss_pred cCCCChh
Q 044974 164 VDLSNNE 170 (182)
Q Consensus 164 v~~~~~~ 170 (182)
-||++..
T Consensus 272 r~p~~~~ 278 (331)
T PRK12392 272 RDPKGGI 278 (331)
T ss_pred hChhhhh
Confidence 3666543
No 6
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=1.6e-20 Score=158.53 Aligned_cols=122 Identities=24% Similarity=0.226 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
++|+.+..+.++++.++.|| .||.|+|++|+.++++....+.....+|.+. .|. ..+++.+.++..+.+|
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~------~~~--~~~~~~~l~~~~~~~~ 172 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVL------AGA--PFTAALWAVLAAFFLW 172 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHH------hhc--cccHHHHHHHHHHHHH
Confidence 46777778889999999999 9999999999888864444332223333322 122 2456667778888889
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~ 134 (182)
+.+++++||+||+|+||++|+||+|+++|+|++.+++..++..++++.+..+
T Consensus 173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 173 GMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887544
No 7
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.86 E-value=2.3e-20 Score=157.90 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
++|+++..+.++.+.++.|| .||+++|++| +|++.+++.+|.+...+.++ .|+. .+++..+..++.+.+.
T Consensus 104 ~~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt~------~~~~~~~l~sl~~gl~ 173 (285)
T TIGR02235 104 WQITVLALVGLCCFLGYLYQ--GPPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQSQ------SFSLIPWKASILVGLA 173 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhc--CCCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhCC------cCcHHHHHHHHHHHHH
Confidence 56889999999999999999 9999999999 79999999999888877765 3542 3677788888899999
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
+.++...||+||+|+||+.|+||+|+++|+|++.+++..+...+|++.+.....
T Consensus 174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765444
No 8
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.86 E-value=2.2e-20 Score=159.16 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
+||+++..+.++.+++++|| .||+|+|++| +|++.+++.+|.+...+.++ .|+. .+++..+..++...+.
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-v~t~------~~~~~~~~~sl~~gll 186 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQG-LGEPLCFLAFGPLAVAAALY-SQTP------SWSLIPLAASIILGLA 186 (304)
T ss_pred hcHHHHHHHHHHHHHhhecc--CCCcccCCCC-chHHHHHHHHHHHHHHHHHH-HhcC------CCCHHHHHHHHHHHHH
Confidence 57999999999999999999 9999999999 79999999999888877765 3442 3567778888889999
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
+.++...||+||+|+||+.|+||+|+++|+|++.+++..+...+|++.+.....
T Consensus 187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765544
No 9
>PLN02922 prenyltransferase
Probab=99.85 E-value=2.8e-20 Score=159.30 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCC----ccchHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP----MEITKPLMFASAF 78 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~ 78 (182)
++|+++..+.++.+.+++|| .||+|+|++| +|++.+++.+|.+...+.|+ .|+...+.. ..+++..+..++.
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~-~~~~~~~~~~~~~~~~~~~~~l~slp 196 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKG-LGEPLCFAAFGPLATTAFYL-ALASGAGGSEMAILPLTPTVLSASVL 196 (315)
T ss_pred cChHHHHHHHHHHHHHHHHh--cCCcccccCc-chHHHHHHHHHHHHHHHHHH-HhcccccccccccccccHHHHHHHHH
Confidence 57899999999999999999 9999999999 78999999999877766654 454322110 0246677788999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
+.+.+.++...||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 254 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLL 254 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888765544
No 10
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.84 E-value=1.3e-19 Score=154.65 Aligned_cols=120 Identities=27% Similarity=0.373 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+..++++.+++++|| .||+++|+++.++++.++..++..+..+.+. ..|. +++..+..+...++++
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a-----~~g~---~~~~~~l~~~~~~l~~ 196 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHA-----LFGE---LNPDIAVLTLIYSIAG 196 (306)
T ss_pred chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHH-----HhCC---CcHHHHHHHHHHHHHH
Confidence 4677778889999999999 9999999999899998887777555443321 1232 5666777788888899
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLV 133 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~ 133 (182)
.++++.||+||+|+||+.|+||+|+++|+|++.+++..+...++.+.+..
T Consensus 197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~ 246 (306)
T TIGR02056 197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY 246 (306)
T ss_pred HHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888877766553
No 11
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.84 E-value=1.1e-19 Score=153.57 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Q 044974 6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVA 85 (182)
Q Consensus 6 ~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 85 (182)
+++..++++.+.+++|| .||+|+|++| +|++.+++.+|.+...+.++ .|+. .+++..+..+....+.+.+
T Consensus 110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~~------~~~~~~ll~sl~~g~l~~~ 179 (284)
T TIGR00751 110 WFIALGALCIAAAITYT--VGSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQAH------RVDWVGILPAVATGLLACA 179 (284)
T ss_pred HHHHHHHHHHHHhHhhc--CCCCccccCc-hHHHHHHHHHHHHHHHHHHH-HhcC------CCCHHHHHHHHHHHHHHHH
Confidence 67778889999999999 9999999999 89999999999888877765 3442 3567777778888888999
Q ss_pred HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA 135 (182)
Q Consensus 86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~ 135 (182)
+...||+||+|+||++|+||+|+++|+|++++++..+...+|++.+....
T Consensus 180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~ 229 (284)
T TIGR00751 180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML 229 (284)
T ss_pred HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987776544
No 12
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=3.7e-19 Score=150.50 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=107.5
Q ss_pred hhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhh
Q 044974 29 RWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSV 108 (182)
Q Consensus 29 rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv 108 (182)
.+||+....++.++...+ ..++..|.. +.|. .......+.+.+.+.+|+.++|++|++||+|+||+.|+||+|+
T Consensus 124 ~~KR~t~~~~~~lG~~~g-~~~l~g~~A----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~ 197 (286)
T PRK12895 124 FLKRYTAWRHIYMGSIIG-LGVLAGYLA----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMN 197 (286)
T ss_pred HHHhCccccHHHHHHHHH-hHHHHHHHH----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHH
Confidence 567777777776666666 344444432 1222 1112233456677888999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH-HHHH
Q 044974 109 MLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESI-FSFY 176 (182)
Q Consensus 109 ~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~-~~~y 176 (182)
++|+|++.+++..++.++..+....+.... +..|+++..+.+..+.+||+++||+|++++ ..|+
T Consensus 198 ~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 198 TYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999888887776543 467889999999999999999999999998 5554
No 13
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=4.1e-19 Score=150.16 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 044974 10 GVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFV 89 (182)
Q Consensus 10 ~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~ 89 (182)
...++++....|+ ..||+...+++..++.++.. +++.|.. + .|. .+++.+++.+.+.+|+.++|++
T Consensus 113 l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~-~l~g~~a-~---~g~---~~~~~~ll~~~~~~w~~~~~~i 178 (284)
T PRK12888 113 LAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVG-PVGAWIA-V---TGT---WSWPAVLLGLAVGLWIGGFDLI 178 (284)
T ss_pred HHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHH-HHHHHHH-H---cCC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666787 56888888888888877644 3344442 2 232 4667777888889999999999
Q ss_pred hhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 044974 90 KDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNN 169 (182)
Q Consensus 90 ~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 169 (182)
|++||+|+||+.|+||+|+++|+|++.+++..++....++....+..... +..|+++..+....+.+||+.+|++|+
T Consensus 179 ~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~~~ 255 (284)
T PRK12888 179 YACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGF---GALWWIGLAITAGAFAYEHAIVSPTDL 255 (284)
T ss_pred HHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHcCccCH
Confidence 99999999999999999999999999999999998888887777766555 457778888999999999999999998
Q ss_pred hHHH-HHH
Q 044974 170 ESIF-SFY 176 (182)
Q Consensus 170 ~~~~-~~y 176 (182)
+.+. .|+
T Consensus 256 ~~~~~~ff 263 (284)
T PRK12888 256 SRVNRAFF 263 (284)
T ss_pred HHHHHHHH
Confidence 8875 654
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.83 E-value=2.8e-19 Score=151.17 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+..++++.+++++|| .||.|+|+++ ++++.+++.+|.....+.++ .|+ | ..+++.++.+.+..+++
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~~~~~~~~-~~~---~---~~~~~~~~~~l~~~l~~ 181 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLVIVLGTYY-LQA---G---TVDSAVFLPALPCGLLI 181 (293)
T ss_pred hHHHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHHHHHHHHH-Hhc---C---CCCHHHHHHHHHHHHHH
Confidence 5777788888999999999 9999999998 68998889888777666544 232 2 24677788888999999
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASS 137 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~ 137 (182)
.+++..||+||+|+||++|+||+|+++|+|++++++..++.++++..+...+..
T Consensus 182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888765543
No 15
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.83 E-value=1.2e-19 Score=155.55 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCc--------c--chH--
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPM--------E--ITK-- 70 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~--------~--~~~-- 70 (182)
.||+++..+.++.+++++|| .||+++|++| +|++.+++.+|.....+.++ .|+...+... . +++
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~~~~~~~~~~~~~~~~~ 187 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIESLLFQGEMFTIQGNLIA 187 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHHHHhcccchhhcchhHH
Confidence 57889999999999999999 9999999999 89999999999877777654 3542111100 0 000
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 71 --PLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 71 --~~~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
+.++.+....+.+..++..||+||+|+||++|+||+|+++|+|++.+++..+...+++..+.....
T Consensus 188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122367888889999999999999999999999999999999999999999999999987765443
No 16
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.83 E-value=1.5e-19 Score=152.35 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
++|+.+..+.++.+.+++|| .||+|+|++++.+++.++..++..+..+.+. ..+. .++..++.+...+++
T Consensus 104 ~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~l~ 173 (283)
T TIGR01476 104 GNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-----IFAP---LTWQSVVVALIYSLG 173 (283)
T ss_pred HHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-----HhCC---CCHHHHHHHHHHHHH
Confidence 34444666778888999999 9999999999899998888776544433332 1121 456666667777788
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA 135 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~ 135 (182)
+.+++.+||+||+|+||++|+||+|+++|+|++++++..+...+++..+....
T Consensus 174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 226 (283)
T TIGR01476 174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL 226 (283)
T ss_pred HHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888876665333
No 17
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.81 E-value=1.5e-18 Score=151.63 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+...+++++++++|| .||+++|++++.+++.++..++.++..+.+ ...|. +++..++++.+.+++.
T Consensus 196 ~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-----a~~g~---~s~~~illal~~~l~~ 265 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPWWAGQ-----ALFGT---LTPDVVVLTLLYSIAG 265 (375)
T ss_pred cHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHH
Confidence 4556666778889999999 999999999999999888877655443222 22343 5667777778888899
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHH
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAV 131 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i 131 (182)
.++++.||+||+|+||+.|+||+|+++|+|++.+++..++.+..+..+
T Consensus 266 lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 266 LGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred HHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766666655443
No 18
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.81 E-value=1.5e-18 Score=148.55 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+...+++.+++++|| .||+++||++..+++.++..++.++..+.+...++ ...++..++.+.+.+++.
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~------~~~~~~~~l~~~~~~l~~ 202 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGA------GLPSWPIVILALLYSLGA 202 (314)
T ss_pred ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHH
Confidence 4666777778888999999 99999999999999998888876655544432211 124566667777777889
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
.+++..||+||+|+||+.|+||+|+++|+|++.+++..+...++++.+.
T Consensus 203 ~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~ 251 (314)
T PRK07566 203 HGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA 251 (314)
T ss_pred HHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888777644
No 19
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.81 E-value=1.6e-18 Score=147.52 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCC-----ccchHHHHHHHHHHHHHHHHH
Q 044974 12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP-----MEITKPLMFASAFMTCLSVAI 86 (182)
Q Consensus 12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~~~~~ 86 (182)
..+.++...|+ ..||+..++++.+++.++.....|... +.|.. ...+.+++.+.....+|+.++
T Consensus 125 ~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~ 193 (300)
T PRK13106 125 PIVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGF 193 (300)
T ss_pred HHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 34455566787 579999999999888887654444322 12321 012334455556677899999
Q ss_pred HHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044974 87 AFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDL 166 (182)
Q Consensus 87 ~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 166 (182)
|++||+||+|+||+.|+||+|+++| |++.+++..++..+.+++...+...++ +..|+++..+....+.+||..+++
T Consensus 194 d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l---g~~y~~~~~~~~~~l~~~~~~~~~ 269 (300)
T PRK13106 194 DLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL---GPIAIAATILHGLIMAYAYYLASK 269 (300)
T ss_pred HHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 999999999999999999888776655 467888888899999999999998
Q ss_pred CChhHHHHHHHHh
Q 044974 167 SNNESIFSFYMFI 179 (182)
Q Consensus 167 ~~~~~~~~~y~~~ 179 (182)
+ .+--+.|.+-.
T Consensus 270 ~-~~~~~~F~~n~ 281 (300)
T PRK13106 270 K-GDFGRAFYYNI 281 (300)
T ss_pred c-hHHHHHHHHcc
Confidence 8 44556665443
No 20
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.81 E-value=1.2e-18 Score=147.43 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
++..+.....+.+++++|| .||+|+|++|++++++. ..++. +++.. ..+.|.. .++.. + ....+|.
T Consensus 117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~-~~~g~--p~~~~----~~~~g~~--~~~~~-l--~a~~~w~ 182 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSN-AAYAL--PLALP----ALALGAP--VPWPP-L--LALMAWS 182 (292)
T ss_pred hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHH-HHHHH--HHHHH----HHHcCCc--chHHH-H--HHHHHHH
Confidence 4555666678889999999 99999999999999985 44442 22221 1233321 11222 2 3445688
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~ 134 (182)
.++|++||+||+|+||+.|+||+|+++|+|++.+++..+.+++..+...+.
T Consensus 183 ~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~ 233 (292)
T PRK13595 183 VGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS 233 (292)
T ss_pred HHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998888877766543
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.80 E-value=5.7e-18 Score=142.74 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH
Q 044974 9 LGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAF 88 (182)
Q Consensus 9 ~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i 88 (182)
.....+.++...|+ .+||++..+++..+...+..+..| +.. + .|. .......+.+.....+|+.+.++
T Consensus 109 ~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g-~~a-~---~g~-~~~~~~~~ll~~~~~~w~~~~~~ 176 (282)
T TIGR01475 109 ILSPLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAG-WVA-V---IGT-ISFFLVAWLLGIGVGFWIAGFDL 176 (282)
T ss_pred HHHHHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHH-HHH-H---hCC-ccchHHHHHHHHHHHHHHHHHHH
Confidence 33455666788898 579999899998888877543333 332 1 222 11114555667778889999999
Q ss_pred HhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044974 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN 168 (182)
Q Consensus 89 ~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~ 168 (182)
+||.||+|+|++.|+||+|+++|+|++.+++...+.+++.+....+...+. +..|+++..+....++++++.+|++|
T Consensus 177 i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~---g~~y~~~~~~~~~~l~~~~~~~~~~~ 253 (282)
T TIGR01475 177 IYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGN---GYIALLALILIGLILAYEHYIVDPGD 253 (282)
T ss_pred HHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999998888888776665444 45777788777888999999999999
Q ss_pred hhHHHH
Q 044974 169 NESIFS 174 (182)
Q Consensus 169 ~~~~~~ 174 (182)
++++..
T Consensus 254 ~~~~~~ 259 (282)
T TIGR01475 254 QSKIQR 259 (282)
T ss_pred HHHHHH
Confidence 888765
No 22
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.80 E-value=4.5e-18 Score=142.85 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
|++.+....++.+.++.|| .++|++|+.++++++..++.....+... .+. .+.+.+.+....++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~l~~~~~~~~ 168 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGIA------VGE---LNEAVILLAAMAFLMT 168 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHHH------hCC---CchHHHHHHHHHHHHH
Confidence 4666666778888999999 4799999889999888877443333221 121 1225556667777889
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-h
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA-R 162 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 162 (182)
.+.++.||+||+|+||++|+||+|+++|+|++.+++...+...++..+........ ...|.+...+....+++++ +
T Consensus 169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~ 245 (279)
T PRK12884 169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIF---NILYLAPVLVADLIFLYSAYS 245 (279)
T ss_pred HHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888766554443222 3567777777777888887 6
Q ss_pred hcCCCChhHHHHH
Q 044974 163 NVDLSNNESIFSF 175 (182)
Q Consensus 163 ~v~~~~~~~~~~~ 175 (182)
..|++|++..+++
T Consensus 246 ~~~~~~~~~~~~~ 258 (279)
T PRK12884 246 LLRSQDRETIRKV 258 (279)
T ss_pred HhcCCCHHHHHHH
Confidence 6777776665554
No 23
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.79 E-value=3.7e-18 Score=144.24 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
++|.++..+.+|.+.|+.|+ .+|.++.+.| +|++.+++++|.+.+.+.++ .|+. .+++..+..++++.+.
T Consensus 119 s~~~~l~lG~l~~~~g~~YT--gGp~PlgY~g-LGEi~~~vffG~l~v~g~~y-iqt~------~~~~~~ll~slp~gil 188 (303)
T COG1575 119 SDWLVLLLGLLCIAAGILYT--GGPFPLGYMG-LGEIFVGVFFGPLIVLGAYY-IQTG------RLSWAILLPSLPVGIL 188 (303)
T ss_pred hhhHHHHHHHHHHHheeeec--cCCcCcccCC-HHHHHHHHHHHHHHHHHHHH-Hhcc------cchHHHHHHHHHHHHH
Confidence 45777888899999999999 9999999999 89999999999888877765 3542 3567788889999999
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSF 139 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~ 139 (182)
+..+...||+||+|.|+|.|++|+|+|+|+|+++.+...++..++++.++.......
T Consensus 189 ~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~ 245 (303)
T COG1575 189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLF 245 (303)
T ss_pred HHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998875554443
No 24
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.79 E-value=1e-17 Score=142.00 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHH
Q 044974 6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF-ASAFMTCLSV 84 (182)
Q Consensus 6 ~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~~~ 84 (182)
..+....++.+....|+ ..||++...++..++.++..+. ..|. .+.|. .++.... +.....+|..
T Consensus 115 ~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l-~g~~----av~g~---~~~~~~~~l~~~~~~W~~ 180 (289)
T PLN02809 115 YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLTFNWGAL-LGWA----AVKGS---LDPAVVLPLYASGVCWTL 180 (289)
T ss_pred HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHHHHHHHH-HHHH----HHhCC---CChHHHHHHHHHHHHHHH
Confidence 34444556777788898 4899998999887777664333 3333 22332 2333332 5566677899
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV 164 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 164 (182)
+.|++++.||+|+||+.|+||+|+++|+|+..+++ .++..++......+...+. +..+++++.+.+..+++||+.+
T Consensus 181 ~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~---~~~~~~~~~~~~~~l~~~~~~v 256 (289)
T PLN02809 181 VYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGL---GWPYYAGLAAAAGHLAWQIQTV 256 (289)
T ss_pred HHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999777766 5777777777777766554 3566778999999999999999
Q ss_pred CCCChhHHHHHH
Q 044974 165 DLSNNESIFSFY 176 (182)
Q Consensus 165 ~~~~~~~~~~~y 176 (182)
|++|++++.+.+
T Consensus 257 ~~~~~~~~~~~F 268 (289)
T PLN02809 257 DLSSRADCNRKF 268 (289)
T ss_pred CCCCHHHHHHHH
Confidence 999999886654
No 25
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.78 E-value=2.4e-17 Score=140.07 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchH----HHHHHHHHHHHHHHH
Q 044974 10 GVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITK----PLMFASAFMTCLSVA 85 (182)
Q Consensus 10 ~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~----~~~~l~~~~~~~~~~ 85 (182)
...+++++...|+ .+||+....++..++..+. .+++.|.. +.|.+ .++ ..++....+++|+.+
T Consensus 121 l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~-~~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g 187 (300)
T PRK12876 121 LAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYL-AILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAA 187 (300)
T ss_pred HHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHH-HHHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667888 5899988888877777664 33344432 22221 222 334556677888999
Q ss_pred HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHH-hh
Q 044974 86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFL-WHRA-RN 163 (182)
Q Consensus 86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~ 163 (182)
+|++|++||+|+||+.|+||+|+++|+|++.+++..++.++.++.+..+...+.+ ...|+.+..+.+..+ .+|| +.
T Consensus 188 ~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~--~~~y~~~~~~~~~~l~~~~~~~~ 265 (300)
T PRK12876 188 NDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNK--KIFYLCSLVPLTVILKTIKHYSL 265 (300)
T ss_pred HHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888877766554 244666666555555 7888 77
Q ss_pred cCCCChhHHHHHHH
Q 044974 164 VDLSNNESIFSFYM 177 (182)
Q Consensus 164 v~~~~~~~~~~~y~ 177 (182)
+|.++++....|++
T Consensus 266 ~~~~~~~~~~~~F~ 279 (300)
T PRK12876 266 IDKKKSTLEQKFFL 279 (300)
T ss_pred cCCCchHHHHHHHH
Confidence 76666777777665
No 26
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.77 E-value=2.8e-17 Score=138.98 Aligned_cols=157 Identities=23% Similarity=0.332 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV 84 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 84 (182)
+..+.....++++.+.|. ++||.+.+++.+++..++.....|... ..|. .+.+.+++.++..+|+.
T Consensus 116 ~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~~---~~~~~~~l~~~~~l~~~ 181 (289)
T COG0382 116 PLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGGS---LPLLAWLLLLAAILWTL 181 (289)
T ss_pred HHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhCc---cchHHHHHHHHHHHHHH
Confidence 334566678888999996 899999999999999988655544322 2222 35667778888899999
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV 164 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 164 (182)
++|++||.||+|+||+.|+||+|+++|+|++..++...+ ...+.....+...... ...+..++......+++|+..+
T Consensus 182 ~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 258 (289)
T COG0382 182 GYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIV 258 (289)
T ss_pred HHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 4444444444433322 2588899999999999999999
Q ss_pred CCCChhHHHHHHHH
Q 044974 165 DLSNNESIFSFYMF 178 (182)
Q Consensus 165 ~~~~~~~~~~~y~~ 178 (182)
+++|++..+.++..
T Consensus 259 ~~~~~~~~~~~~~~ 272 (289)
T COG0382 259 DVRDPPACFALFDV 272 (289)
T ss_pred cccChHHHHHHHHH
Confidence 99998888887764
No 27
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.77 E-value=4.1e-17 Score=137.08 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV 84 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 84 (182)
+..+....++.++++.|| .|+|++|.++|+.++...|....+|... .+. ....+.+.+....+++..
T Consensus 105 ~~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~--~~~~~~~~l~~~~fl~~~ 171 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGAA------VGT--EGLLALLVLFALAALATL 171 (276)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHHH------hcc--cchHHHHHHHHHHHHHHH
Confidence 445555677778899999 4999999999998877776443333221 121 012233444556667788
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHhh
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLW-HRARN 163 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 163 (182)
++|++||+||+|+||+.|+||+|+++|+|++.+++...+....+........... +..|++...+....+. +.-+.
T Consensus 172 ~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~ 248 (276)
T PRK12882 172 AREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF---GLWYLVLVAPADLVMLAAAYRS 248 (276)
T ss_pred HHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887777666543222222 3455555555544433 45556
Q ss_pred cCCCChhHHHHHHH
Q 044974 164 VDLSNNESIFSFYM 177 (182)
Q Consensus 164 v~~~~~~~~~~~y~ 177 (182)
.|.+|.+.+...+.
T Consensus 249 ~~~~~~~~~~~~f~ 262 (276)
T PRK12882 249 LKKTDPTASQKLLK 262 (276)
T ss_pred HcCCCHHHHHHHHH
Confidence 66777766655443
No 28
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.75 E-value=8.6e-17 Score=135.72 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
++..+....++.++.+.|+ ..||+...+++..++.++.....| |.. ..|. .+++.+.+.....+|.
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g-~~a----~~g~---~~~~~~ll~~~~~lw~ 173 (281)
T TIGR01474 108 NPLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMG-WAA----VTGD---LSTAAWVLYLANILWT 173 (281)
T ss_pred hHHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHH-HHH----HcCC---CcHHHHHHHHHHHHHH
Confidence 4556666778888899998 489988888888777776544444 331 2232 4555555667778899
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN 163 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (182)
.+.+.+|++||+|+||++|+||+|+++|+|++.. ...++.++.......+..... +..|+++..+....+.+++.+
T Consensus 174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~ 249 (281)
T TIGR01474 174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGL---GPVYYLGLAAAALLLIRQIAT 249 (281)
T ss_pred HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988644 445555555544444444333 456778888889999999999
Q ss_pred cCCCChhHHHHHHH
Q 044974 164 VDLSNNESIFSFYM 177 (182)
Q Consensus 164 v~~~~~~~~~~~y~ 177 (182)
+|++|++++++++.
T Consensus 250 ~~~~~~~~~~~~F~ 263 (281)
T TIGR01474 250 LDIRDPENCLKLFK 263 (281)
T ss_pred hCCCCHHHHHHHHH
Confidence 99888877766554
No 29
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=1.2e-16 Score=135.48 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV 84 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 84 (182)
++.+....++.+....|+ ..||++..+++..++..+.. +++.|.. + .|. .+.+.+.+...+.+|..
T Consensus 111 ~~~~~l~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~-~l~g~~a-~---~g~---~~~~~~ll~~~~~lw~~ 176 (291)
T PRK12886 111 PLCLYLSPPALFFLLLYS------YCKRFTALAHVVLGFCLALA-PLGAWIA-I---RGT---IELPAILLGLAVLFWVA 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHh------hhhccccccHHHHHHHHHHH-HHHHHHH-H---cCC---CcHHHHHHHHHHHHHHH
Confidence 444444555666788899 47999989998888876644 4444542 2 232 45666677777888999
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV 164 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 164 (182)
+.|++|++||.|+||+.|+||+|+++|+|++.++....+...+.+++..+..... +..|.++..+....+.++++..
T Consensus 177 ~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~ 253 (291)
T PRK12886 177 GFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL---GPWFLAGLAVTGILLLYEHWLL 253 (291)
T ss_pred HHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888888877776665444 4567777777777777999999
Q ss_pred CCCCh-hHHHH
Q 044974 165 DLSNN-ESIFS 174 (182)
Q Consensus 165 ~~~~~-~~~~~ 174 (182)
+++|+ ++.++
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T PRK12886 254 RGGDLTRLDAA 264 (291)
T ss_pred CCCChhHHHHH
Confidence 98884 46666
No 30
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.75 E-value=4.3e-17 Score=138.60 Aligned_cols=118 Identities=21% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcC--CCc--hhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Q 044974 10 GVIAWLFISTAYSAQ--LPF--LRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVA 85 (182)
Q Consensus 10 ~~~~~~~lg~~YS~~--~pP--~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 85 (182)
..+++.+.++.||.+ .+| +|+|+.|..||+.++..||.....+... . .+. ..+.....++......+
T Consensus 124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~----~-~~~----~~~~~~i~l~~~~~l~~ 194 (307)
T PRK13591 124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGS----Y-CGS----LIPVGLIFLFFGVKLFI 194 (307)
T ss_pred HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHh----h-hhh----HHHHHHHHHHHHHHHHH
Confidence 457888899999932 124 5899999999999999998643221111 0 010 11222223333334578
Q ss_pred HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
++++||++|+||||++|+||+|+++|+|+|.++...++..++++.+.....
T Consensus 195 ~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~ 245 (307)
T PRK13591 195 NSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245 (307)
T ss_pred HHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999888765443
No 31
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.74 E-value=1.5e-16 Score=134.36 Aligned_cols=154 Identities=9% Similarity=0.094 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
++..+....++.++...|+ ..||+...+++..++.++.. +++.|.. + .|. .+++.+++.....+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~-~l~~~~a-~---~g~---~~~~~~~l~~~~~~w~ 178 (285)
T PRK12847 113 NKTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMG-ILMAFAA-V---QNQ---LDIEAILLYIGCIFWT 178 (285)
T ss_pred hHHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHH-HHHHHHH-H---cCC---CcHHHHHHHHHHHHHH
Confidence 4566667778888899998 36777777788777777643 3333332 2 232 4567777788888999
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN 163 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (182)
.+.+.+|++||+|+|+++|+||+|+++|+|++.+++.......+++.+. +...+. ...++.++++....+.+++..
T Consensus 179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~---~~~~y~~~~~~~~~l~~~~~~ 254 (285)
T PRK12847 179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSL---HNIFYLAILAAAGIFYYQYKL 254 (285)
T ss_pred HHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcC---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776666655543 333232 234445666667789999999
Q ss_pred cCCCChhHHHHH
Q 044974 164 VDLSNNESIFSF 175 (182)
Q Consensus 164 v~~~~~~~~~~~ 175 (182)
+|++|++++...
T Consensus 255 ~~~~~~~~~~~~ 266 (285)
T PRK12847 255 LDFDNPANCMYA 266 (285)
T ss_pred hCCCCHHHHHHH
Confidence 999987766544
No 32
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.74 E-value=2.3e-16 Score=133.79 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 044974 12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKD 91 (182)
Q Consensus 12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~d 91 (182)
....+....|+ .+||+...+++..++..+..+..| +.. +.|. .+.+.+++...+++|..++|.+|+
T Consensus 123 ~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G-~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a 188 (291)
T PRK12874 123 FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAG-VVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYS 188 (291)
T ss_pred HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHH-HHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677888 479999899998888877544444 432 2232 445556667778899999999999
Q ss_pred cCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q 044974 92 LHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNES 171 (182)
Q Consensus 92 i~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 171 (182)
+||+|+||+.|+||+|+++|+|++.+.....+....+.....+..... ..+++++..+.+..+.+||+.++.+|+++
T Consensus 189 ~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (291)
T PRK12874 189 LQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKI 265 (291)
T ss_pred hccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999999999999998888777666665555444333 35667788888899999999998777777
Q ss_pred HHHHH
Q 044974 172 IFSFY 176 (182)
Q Consensus 172 ~~~~y 176 (182)
.+.|+
T Consensus 266 ~~~ff 270 (291)
T PRK12874 266 DKAFF 270 (291)
T ss_pred HHHHH
Confidence 77753
No 33
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.73 E-value=1e-16 Score=135.88 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 044974 8 VLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIA 87 (182)
Q Consensus 8 ~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 87 (182)
+.....+.+....|+ -.||+...+++..++.++.. +++.|.. ..|. .+++.+.+...+++|..++|
T Consensus 118 ~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~-~l~g~~a----~~g~---~~~~~~~l~~~~~lw~~~~d 183 (290)
T PRK12870 118 FWLCVAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFA-VLISWSA----VTGH---LDLGTWLLWAATVFWTLGFD 183 (290)
T ss_pred HHHHHHHHHHHHHhh------hhhhccccceeeehHHHHhH-HHHHHHH----HcCC---CCHHHHHHHHHHHHHHHHHH
Confidence 334455666778887 25777667787777777743 3444432 1232 45666677778889999999
Q ss_pred HHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc--C
Q 044974 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV--D 165 (182)
Q Consensus 88 i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v--~ 165 (182)
++|++||+|+|+++|+||+|+++|+|++.+++. ++.+.......++...+. +..|+++..+....+.+||.++ |
T Consensus 184 ~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~ 259 (290)
T PRK12870 184 TVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLEL---HLPFWIGLAIAAVLWARQYRRLRQA 259 (290)
T ss_pred HHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999998776 566666555566665554 3567778888889999999999 5
Q ss_pred CCChhHHHHHH
Q 044974 166 LSNNESIFSFY 176 (182)
Q Consensus 166 ~~~~~~~~~~y 176 (182)
.+|++++.+|+
T Consensus 260 ~~~~~~~~~~F 270 (290)
T PRK12870 260 NLPPLAYGQLF 270 (290)
T ss_pred CCChHHHHHHH
Confidence 55666665554
No 34
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.73 E-value=1.2e-16 Score=134.96 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 044974 8 VLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIA 87 (182)
Q Consensus 8 ~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 87 (182)
...++..++++++|| .||+|+|++|+.+..+.+. + .....+.|+ .|+ |. .++..++.+ ..+|+.+++
T Consensus 116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~-~-~~~~~~~y~-~~t---g~---~~~~~l~~a--~~l~~~~~~ 182 (282)
T PRK12875 116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGL-Y-ILPGVAAYA-LVS---GS---LPPLLAVAG--GWLWAMGMH 182 (282)
T ss_pred HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHH-H-HHHHHHHHH-HHc---CC---CcHHHHHHH--HHHHHHHHH
Confidence 334456788999999 9999999999876554232 2 233334443 222 21 333333333 357899999
Q ss_pred HHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA 135 (182)
Q Consensus 88 i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~ 135 (182)
++||+||+|+||+.|+||+|+++|+|++++++..+++++..+.+.++.
T Consensus 183 ~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~ 230 (282)
T PRK12875 183 TFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL 230 (282)
T ss_pred HHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988887654
No 35
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.73 E-value=2.7e-16 Score=132.32 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
++..+....++.++.+.|| .++||++.++|+.++...|.....|... .+ + ....+.+....++|.
T Consensus 103 ~~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~-~~----~-----~~~~~~l~~~~f~~~ 167 (279)
T PRK09573 103 NIYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLA-VF----N-----VLRIIILFLCAFFST 167 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHH-Hc----c-----chHHHHHHHHHHHHH
Confidence 4555566677888899999 3789999899999999988765544432 21 1 123344455666788
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR- 162 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 162 (182)
.++++.||.||+|+||++|+||+|+++|+|++.+++...+............... .+..|.++..+....+.+++.
T Consensus 168 ~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~~~~l~~~~~ 244 (279)
T PRK09573 168 WSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGI---FGIYYLIVVIICDILFIIAMLI 244 (279)
T ss_pred HHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHH
Confidence 8999999999999999999999999999999999988887777776654333221 245677666666666666633
Q ss_pred hcCCCChhH
Q 044974 163 NVDLSNNES 171 (182)
Q Consensus 163 ~v~~~~~~~ 171 (182)
..+.+|+++
T Consensus 245 ~~~~~~~~~ 253 (279)
T PRK09573 245 LLKNPSIEG 253 (279)
T ss_pred HHcCCCHHH
Confidence 444444443
No 36
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.72 E-value=2.9e-16 Score=128.78 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+....++.+.+.+|| ||.|+|++|+.+++++++.++.....+.+. .+. ..+.+....+.+..++.
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~ 159 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLI 159 (257)
T ss_pred CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHH
Confidence 4666777778888889999 888999999989999988887555544433 111 12455566666667788
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN 163 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (182)
..+...+|++|+|+||+.|+||+|+++|+|++.. ..+....+.. ......... ...........+..+...++.
T Consensus 160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 233 (257)
T PF01040_consen 160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFS---PWPLIIALLLAALALIFILWF 233 (257)
T ss_pred HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999998 1122222211 111111111 233444444555556665655
Q ss_pred cCCCChhHHHHHHH
Q 044974 164 VDLSNNESIFSFYM 177 (182)
Q Consensus 164 v~~~~~~~~~~~y~ 177 (182)
.+.+++++.+..++
T Consensus 234 ~~~~~~~~~~~~~~ 247 (257)
T PF01040_consen 234 FRKRDPKKPERLFF 247 (257)
T ss_pred HhcCCcchHHHHHH
Confidence 55555555444443
No 37
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.71 E-value=8e-16 Score=129.83 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV 84 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 84 (182)
+..+....++.++.+.|+ ..||+...+++..++..+.....+ |.. + .|. .+.+.+.+.....+|..
T Consensus 111 ~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g-~~a-~---~~~---~~~~~~~l~~~~~~w~~ 176 (282)
T PRK12848 111 TLTIWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMA-FAA-V---QGS---VPLEAWLLFLANILWTV 176 (282)
T ss_pred HHHHHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHH-HHH-H---hCC---CcHHHHHHHHHHHHHHH
Confidence 334444566777788886 357777677887777777544433 321 2 222 45666677777888999
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV 164 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 164 (182)
+.+..|++||.|+||++|+||+|+++|+|++.+.. .++.+........+...+. +..|+++..+....+.+|+..+
T Consensus 177 ~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~ 252 (282)
T PRK12848 177 AYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLI 252 (282)
T ss_pred HHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999998877 4455554444444444333 4567788888889999999999
Q ss_pred CCCChhHHHH
Q 044974 165 DLSNNESIFS 174 (182)
Q Consensus 165 ~~~~~~~~~~ 174 (182)
|++|++++.+
T Consensus 253 ~~~~~~~~~~ 262 (282)
T PRK12848 253 RDREREACFK 262 (282)
T ss_pred CCCCHHHHHH
Confidence 9998776644
No 38
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=130.56 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+++.+....++.++.+.|+ ..||+....+...++..+.....+ |+. + .|. ++++.+.+.....+|.
T Consensus 140 ~~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g-~~a-~---~g~---~~~~~~~l~~~~~~w~ 205 (314)
T PRK12878 140 NWFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMG-WAA-H---FGS---LSLAAVLLYAGSIAWT 205 (314)
T ss_pred hHHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHH-HHH-H---hCC---CchHHHHHHHHHHHHH
Confidence 5666777778888899998 478766555655555554333333 332 2 232 4556666667778899
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN 163 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (182)
.+.+.++++||+|+||++|+||+|+++|+|++.+++.... .........+...+. +..|+++.......+.+|+.+
T Consensus 206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 281 (314)
T PRK12878 206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGV---PLLALLGLLAAAAHLAWQIAR 281 (314)
T ss_pred HHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999884444 433333333333333 345666666666678899999
Q ss_pred cCCCChhHHHHHHH
Q 044974 164 VDLSNNESIFSFYM 177 (182)
Q Consensus 164 v~~~~~~~~~~~y~ 177 (182)
+|++|+++.+.++.
T Consensus 282 ~~~~~~~~~~~~F~ 295 (314)
T PRK12878 282 LDIDDPDQCLRLFK 295 (314)
T ss_pred cccCChHHHHHHHH
Confidence 99888877766654
No 39
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=1.6e-15 Score=128.83 Aligned_cols=153 Identities=11% Similarity=0.001 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 044974 12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKD 91 (182)
Q Consensus 12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~d 91 (182)
.++++....|+ -.||+....++..++..+ ..++..|.. +.|. .......+++...+.+|..+.|++++
T Consensus 124 ~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a-~~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA 191 (294)
T PRK12873 124 FLALPPILIYP------SAKRWFAYPQAILALCWG-FAVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYA 191 (294)
T ss_pred HHHHHHHHHHH------HHHhccccchHHHHHHHH-hHHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777 367766666776666555 333333432 2232 11112344445677889999999999
Q ss_pred cCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh--
Q 044974 92 LHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNN-- 169 (182)
Q Consensus 92 i~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~-- 169 (182)
+||.|.|++.|++|+|+++|+ ++..+...++.+..+++...+...++ +..|+++..+.+..+.+||+.+|++|+
T Consensus 192 ~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l---~~~y~~~~~~~~~~l~~~~~~~~~~~~~~ 267 (294)
T PRK12873 192 MADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQV---GFIFWPFWLIASIGMQRDILKLFPEKQSI 267 (294)
T ss_pred HHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCcCcccH
Confidence 999999999999999999996 67777889999999888888887666 467888998899999999999999883
Q ss_pred hHH-HHHHHHhh
Q 044974 170 ESI-FSFYMFIW 180 (182)
Q Consensus 170 ~~~-~~~y~~~w 180 (182)
+++ +.|.+-.|
T Consensus 268 ~~c~~~F~~n~~ 279 (294)
T PRK12873 268 KTIGNHFSNQVI 279 (294)
T ss_pred HHHHHHHHhccH
Confidence 555 55655443
No 40
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.65 E-value=9.5e-15 Score=122.81 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
|++.+.....+.++++.|+ .++|+++.++|..++...|..+..|... . +. .++..+. ..+.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~~---~~~~~~~-~~~~fl~~ 167 (277)
T PRK12883 103 NIEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIA-----V-GR---IGLAGYL-AICAFLVN 167 (277)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHH-----h-cc---ccHHHHH-HHHHHHHH
Confidence 4666666677788899999 3789988889999888888665444321 1 21 2333222 23345566
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN 163 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (182)
.++++.||+||+|+||++|+||+|+++|+|++.++.................. .. +..|.....+.+.++..+.+.
T Consensus 168 ~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~-~~---~~~y~~~~~~~~~~l~~~~~~ 243 (277)
T PRK12883 168 VAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKA-GI---GLGYLPIIIVDAIILYAAYLV 243 (277)
T ss_pred HHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHH-cc---cHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998766654444333221111 11 123333333334444455555
Q ss_pred cCCCCh
Q 044974 164 VDLSNN 169 (182)
Q Consensus 164 v~~~~~ 169 (182)
.+.+|+
T Consensus 244 ~~~~~~ 249 (277)
T PRK12883 244 LRNPDR 249 (277)
T ss_pred HhCcch
Confidence 554444
No 41
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.60 E-value=8.3e-14 Score=117.33 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHH-HHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFI-STAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL 82 (182)
Q Consensus 4 ~~~l~~~~~~~~~l-g~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 82 (182)
+++......++.++ .+.|| . .+||++.. +..++...+...+++.|+. + .|. .+++.+.+...+.+|
T Consensus 104 ~~~~~~l~~~~~~~~~~~Yt--~---~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~---~g~---~~~~~~~l~~~~~~w 170 (280)
T TIGR01473 104 NPLAALLGLFGIFFYVIVYT--I---WLKRRTPQ-NTVIGGFAGAVPPLIGWAA-V---TGS---ISLGAWLLFAIIFLW 170 (280)
T ss_pred hHHHHHHHHHHHHHHHhhcC--h---hhccCCch-hHHHHHHHHHHHHHHHHHH-h---cCC---CCHHHHHHHHHHHHH
Confidence 34444445566654 78898 3 67998865 4445556666666666552 2 222 456666667777888
Q ss_pred HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTI-IGHATLLLFLWHRA 161 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 161 (182)
....+...+.+|.|.||+.|+||+|+++|+|++.+.....+..........+..... +..|+ ++..+....+.+++
T Consensus 171 ~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~ 247 (280)
T TIGR01473 171 QPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGT---GWLYLIVATLLGALFLYLAF 247 (280)
T ss_pred HHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHH
Confidence 888877888999999999999999999999999998887777766666555444333 34555 56666678888999
Q ss_pred hhcCCC-Chh-HHHHHHHH
Q 044974 162 RNVDLS-NNE-SIFSFYMF 178 (182)
Q Consensus 162 ~~v~~~-~~~-~~~~~y~~ 178 (182)
+..|++ |++ +-+.|..-
T Consensus 248 ~~~~~~~~~~~~~~~f~~s 266 (280)
T TIGR01473 248 KFYRDPTDRKKARKLFKFS 266 (280)
T ss_pred HHhcCCCcHHHHHHHHHHH
Confidence 999887 654 44555543
No 42
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.56 E-value=3.5e-13 Score=113.67 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhc
Q 044974 13 AWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDL 92 (182)
Q Consensus 13 ~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di 92 (182)
...+....|| .++||++.. +..++...|...+++.|.. ++ | ..+++.+.+...+++|..+....++.
T Consensus 115 ~~~~~~~~Yt-----~~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~ll~~~~~~w~~~~~~~l~~ 181 (279)
T PRK12869 115 GWFFYAVVYT-----IWLKPRTWL-NIVIGGFAGNAAALAGYAS-GT---G---SLDLEAVLLSFLIYLWTPGHIWSLAL 181 (279)
T ss_pred HHHHHHhhhC-----cccccCChH-HHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888 479999964 6666666666666776653 22 2 24667777788888899999888899
Q ss_pred CChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-Hhhc-CCCChh
Q 044974 93 HDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHR-ARNV-DLSNNE 170 (182)
Q Consensus 93 ~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~v-~~~~~~ 170 (182)
+|.|.|+++|+||+|+++|+|++.+.....+......+...+. ... +..|.++..+....++++ .+.. ++++++
T Consensus 182 ~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~---g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~ 257 (279)
T PRK12869 182 KYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYI---GLIGLILVAILSAALMATSIRALLNPTKEE 257 (279)
T ss_pred HhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cHHHHHHHHHHHHHHHHHHHHHhhCCChHH
Confidence 9999999999999999999999999888877776665554443 222 456776666555555544 3334 444445
Q ss_pred HHHHHHHHhh
Q 044974 171 SIFSFYMFIW 180 (182)
Q Consensus 171 ~~~~~y~~~w 180 (182)
..+.|..-+|
T Consensus 258 ~~~~f~~s~~ 267 (279)
T PRK12869 258 AWKMFKASSP 267 (279)
T ss_pred HHHHHHHHHH
Confidence 5555655443
No 43
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.53 E-value=5e-13 Score=113.61 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=104.3
Q ss_pred HHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChH
Q 044974 17 ISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVE 96 (182)
Q Consensus 17 lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~e 96 (182)
....|+ .++||++ .++..++...+...++..++. + .|. ++++.+++.+.+++|..+.+..++++|.|
T Consensus 127 ~~~~Ys-----~~lKr~~-~~~~~v~~~~g~~~~l~g~~a-~---~g~---~~~~~~~l~~~~~lw~~~~~~~~~~~d~~ 193 (296)
T PRK04375 127 YVVVYT-----LWLKRRT-PQNIVIGGAAGAMPPLIGWAA-V---TGS---LSWEALILFLIIFLWTPPHFWALAIFRKD 193 (296)
T ss_pred HHHHhc-----cchhcCC-ccchHHHHHHHHhHHHHHHHH-h---CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788 3799999 567666666554555444442 1 222 46667777888889999999999999999
Q ss_pred HHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHhhcCCCChhHH-HH
Q 044974 97 GDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTII-GHATLLLFLWHRARNVDLSNNESI-FS 174 (182)
Q Consensus 97 gDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~v~~~~~~~~-~~ 174 (182)
.||++|+||+|+++|+|++.+.+...+.......+........ +..|.+ +..+....+.++++.+|++|++.+ +.
T Consensus 194 D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 270 (296)
T PRK04375 194 DYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMA---GLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKL 270 (296)
T ss_pred hHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHH
Confidence 9999999999999999999998877777776665554443222 244554 455567777789999988876544 45
Q ss_pred HHHHh
Q 044974 175 FYMFI 179 (182)
Q Consensus 175 ~y~~~ 179 (182)
|+.-.
T Consensus 271 F~~s~ 275 (296)
T PRK04375 271 FRYSI 275 (296)
T ss_pred HHHHH
Confidence 55433
No 44
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.53 E-value=7.1e-13 Score=112.85 Aligned_cols=148 Identities=13% Similarity=0.077 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhh---HHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNS---FLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC 81 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p---~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 81 (182)
+..+...+.+.++++.|+ ..|.. -..| ..+++. .+. .++..+. + .|. .+...+....+..+
T Consensus 123 ~~~~~l~~~~~~~~~~Y~--~~kr~-~~~p~~~l~G~~~----~~~-~~~~g~~--~---~g~---~~~~~~ll~~~~~~ 186 (297)
T PRK12871 123 LYVFVIMLYSYGIEAFYQ--VKKRN-QKYPVAQLLGRTD----FTL-FPAAGYL--C---YGQ---PDMTALLYMVFFYP 186 (297)
T ss_pred HHHHHHHHHHHHHHHHHh--ccccc-ccccHHHHHHHHH----HHH-HHHHHHH--H---hCC---CcHHHHHHHHHHHH
Confidence 344555567777888888 53322 2246 223332 222 2222222 1 232 45556666788888
Q ss_pred HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA 161 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (182)
|..+++.+||++|+|+|++.|+||+|+++|++++.++...+..+..+..+ +...+.+ ...+.....+.+.++.++.
T Consensus 187 w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~~g--~~~~~~~~~~~~~~~~~~~ 262 (297)
T PRK12871 187 WTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRELG--PIALYGFLAGFVLLAGANL 262 (297)
T ss_pred HHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877666655554443 2222332 2334444466677788898
Q ss_pred hhcCCCChhHH
Q 044974 162 RNVDLSNNESI 172 (182)
Q Consensus 162 ~~v~~~~~~~~ 172 (182)
++.+.+|++.+
T Consensus 263 ~~~~~~~~~~~ 273 (297)
T PRK12871 263 YLWKEKSQDAG 273 (297)
T ss_pred HHhcCCCHHHH
Confidence 98899988876
No 45
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.20 E-value=1.3e-09 Score=93.16 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred HHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChH
Q 044974 17 ISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVE 96 (182)
Q Consensus 17 lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~e 96 (182)
....|+ .++||++..+++..++..+ .+++..|.. ..|. .+...+.+...+++|..+.+...+++|.|
T Consensus 130 ~~~~Yt-----~~lKr~t~~~~~vgg~~ga-~p~l~G~~a----~~g~---~~~~~~~l~~~~~~W~~~h~~~~ai~~~~ 196 (306)
T PRK13362 130 YVGVYS-----LYLKRNSVYGTLVGSLSGA-MPPVVGYCA----VTGQ---FDAGALILLLMFSLWQMPHSYAIAIFRFN 196 (306)
T ss_pred HHHHHh-----HHHhccCcHhHHHHHHHHH-HHHHHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 456788 4899999888886555544 444444432 1222 45667777888888999999999999999
Q ss_pred HHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974 97 GDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR 162 (182)
Q Consensus 97 gDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (182)
.|+++|+||+|+++|+|++.+.......+............ ..+..|.+...+....+++.+.
T Consensus 197 Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g---~~g~~y~~~~~~~~~~~l~~a~ 259 (306)
T PRK13362 197 DYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAG---YTGIGYLAVAAATSLWWLAMAL 259 (306)
T ss_pred hHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865444444333333222221 1234555544444444444333
No 46
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.17 E-value=9.6e-10 Score=93.31 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=78.3
Q ss_pred HHHHHHHHHH-----hcCCCchhhhhhhHHHHHHHHHHhhccchhH--HHHH-HHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 12 IAWLFISTAY-----SAQLPFLRWKGNSFLAAVCMVFMCGLLPQVP--FFFH-VQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 12 ~~~~~lg~~Y-----S~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
+...+..+.| + -++|+.|+.+|+.++...+....++ .+.. +.....|.+ ......+.+.+..++..
T Consensus 115 i~~~~i~~lY~~lm~a-----~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~ 188 (299)
T PRK13592 115 VGWFLFLYIYGTLMSF-----WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS 188 (299)
T ss_pred HHHHHHHHHHHHHHHH-----HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence 3445567888 7 4999999999999888777443222 1110 011112211 11111234455666678
Q ss_pred HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 044974 84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLV 133 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~ 133 (182)
.++|+.||+|| |+|++. .+|+|+++|+|+|.+++..+..++.+.+.+.
T Consensus 189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp 236 (299)
T PRK13592 189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNFAL 236 (299)
T ss_pred HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhhHH
Confidence 99999999999 888865 9999999999999999999988888876643
No 47
>PLN02776 prenyltransferase
Probab=98.94 E-value=1.3e-07 Score=82.00 Aligned_cols=140 Identities=11% Similarity=-0.014 Sum_probs=100.5
Q ss_pred HHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHH
Q 044974 18 STAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEG 97 (182)
Q Consensus 18 g~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~eg 97 (182)
...|+ .+||+... +..++...|.++++..|.. +.|. ++++.+++...+.+|...-.....++|.|.
T Consensus 113 ~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----vtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD 178 (341)
T PLN02776 113 AFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA----ASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDD 178 (341)
T ss_pred HHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34677 58998866 4577888787777777763 2332 567777777778888886566667777789
Q ss_pred HHHcCCcchhhh--hcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q 044974 98 DREHGIQTLSVM--LGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFS 174 (182)
Q Consensus 98 Dr~~G~~Tlpv~--lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 174 (182)
|++.|++.+|+. .|++.++.+....+.+..+..+...+.... ..+++++..+.+..+.++|+.++++|++..+.
T Consensus 179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~---~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~ 254 (341)
T PLN02776 179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTS---SPFALEAALLTAYLAASAASFYREPTNANARK 254 (341)
T ss_pred HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999985 478888888877777766665543332111 35677777777889999999998888766544
No 48
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=97.87 E-value=6.3e-05 Score=63.31 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLW 158 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (182)
-.+|+..-|.+++=||-+.|.+.|+|+-+.|+|++.-.++ .++-......+...|+.+++. +.|+.+++..+.=|.
T Consensus 233 ~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl-~gf~a~~ia~La~aG~~s~q~---~pyy~~lg~~~~~L~ 308 (353)
T KOG1381|consen 233 GVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL-SGFGAAQIASLAAAGIASDQT---WPYYAALGAVAARLG 308 (353)
T ss_pred hhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH-hhhhHHHHHHHHHhhhccCCC---chHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999998766664 456666666666788888875 467777888888899
Q ss_pred HHHhhcCCCChhHHHHHH
Q 044974 159 HRARNVDLSNNESIFSFY 176 (182)
Q Consensus 159 ~~~~~v~~~~~~~~~~~y 176 (182)
.+-..||-+|++.+...+
T Consensus 309 ~~i~~vdiDnp~dC~k~f 326 (353)
T KOG1381|consen 309 SQIYKVDIDNPSDCWKKF 326 (353)
T ss_pred hheeeeecCChHHHHHHH
Confidence 999999999999887654
No 49
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.17 E-value=6e-05 Score=62.19 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASS 137 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~ 137 (182)
...+-.-++.--||.||.|.||+.|+-|+++.+|+..+-.++.-++...|.+..+.+.-.
T Consensus 237 plalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~ 296 (359)
T KOG4581|consen 237 PLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHC 296 (359)
T ss_pred eeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677889999999999999999999999999999999999999998887766543
No 50
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.017 Score=49.53 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=76.7
Q ss_pred HHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Q 044974 19 TAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGD 98 (182)
Q Consensus 19 ~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~egD 98 (182)
..|| ..+||+.. -|..++-+-|..+++..|+. +.|. .+++.+.+.+.+++|.--=--.=+++-.|.=
T Consensus 137 ~vYT-----~~lKR~T~-~NiviGg~aGa~PpliGwaA----vtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY 203 (304)
T COG0109 137 VVYT-----LWLKRRTP-QNIVIGGFAGAMPPLIGWAA----VTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDY 203 (304)
T ss_pred hhhh-----hhccCCcc-cceeeeeccccccccceeee----eeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677 47899884 35555666666777666652 2333 4555555555555442211111112223344
Q ss_pred HHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHhhcCCCC-hhHHHHH
Q 044974 99 REHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATL-LLFLWHRARNVDLSN-NESIFSF 175 (182)
Q Consensus 99 r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~v~~~~-~~~~~~~ 175 (182)
++.|+.-+|+.-|++.+++-...-..+.....+..... +..+..|.+...++ +..+.+..+..+.+| +++.+.|
T Consensus 204 ~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~---g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF 279 (304)
T COG0109 204 KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALL---GYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLF 279 (304)
T ss_pred HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 68999999999999999986544444444433333232 22244555544444 444444444444444 5555555
No 51
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=95.41 E-value=0.25 Score=41.38 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhc---HHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLG---KEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~~~~ 129 (182)
+...+...+-.++||+.|.|.|+++ +++=|..-| ++.+..++..+..++...
T Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~ 98 (279)
T PRK12884 44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLIA 98 (279)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344456777899999999999988 566666556 566666665555554443
No 52
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=94.90 E-value=0.3 Score=41.82 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
....+...+-..+||..|.|.|++.+ .|.+|. ++.+|.+..+...+..++.++...
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~ 118 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFI 118 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667789999999999999776 233443 466777777766666555544443
No 53
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.74 E-value=0.87 Score=38.95 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhc
Q 044974 5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGL 47 (182)
Q Consensus 5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~ 47 (182)
+..+......++...+|| +++|++|..++++++..++.
T Consensus 115 ~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~d~l~va~~~~l 152 (295)
T PRK12324 115 PKLALVLLVYLVLNLAYS-----FKLKHQPVLDVFCIASGFVL 152 (295)
T ss_pred HHHHHHHHHHHHHHHHhh-----HHhcCCchhhHHHHHHHHHH
Confidence 444444566777888999 59999999999987777663
No 54
>PRK08238 hypothetical protein; Validated
Probab=94.41 E-value=1.2 Score=40.72 Aligned_cols=84 Identities=20% Similarity=0.357 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
++..+..++...++..+|| +++|+.+++.++++++.++.-...|.. ..+ .+.+.+++. +..++.
T Consensus 294 ~~~~~~~~~~~~~~~~~Ys-----~~lKr~~~~~~~~la~~~~lr~~~G~~------a~~----~~~s~wll~-~~~~~~ 357 (479)
T PRK08238 294 GPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIAGAA------AIG----VALSFWLLA-FSMFFF 357 (479)
T ss_pred hHHHHHHHHHHHHHHHHhh-----HHhcCCccccchHHHHHHHHHHHHHHH------Hhc----cCHHHHHHH-HHHHHH
Confidence 3444555567777778999 589999999999888877643333321 112 234444332 333456
Q ss_pred HHHHHHhhcCChHHHHHcCC
Q 044974 84 VAIAFVKDLHDVEGDREHGI 103 (182)
Q Consensus 84 ~~~~i~~di~D~egDr~~G~ 103 (182)
....+.|...|.++|++.|.
T Consensus 358 l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 358 LSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHhHHHHHHHHhcCC
Confidence 77889999999999999886
No 55
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.15 E-value=0.49 Score=40.49 Aligned_cols=51 Identities=27% Similarity=0.402 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHc---CCcchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEGDREH---GIQTLSV-MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~egDr~~---G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
++...+..++||+.|.|.||++ ..|-+|. ++.++.+..++..+..++....
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la 110 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALA 110 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999995 3344443 4667777776666655554443
No 56
>PRK13592 ubiA prenyltransferase; Provisional
Probab=93.28 E-value=1.2 Score=38.32 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~ 128 (182)
+.+++...+-.++||..|+|-||.+. -|-+|. +.-+|.++.++..+..++..
T Consensus 53 ~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 53 FTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 33444567778999999999998763 233433 34556666666555444443
No 57
>PRK13595 ubiA prenyltransferase; Provisional
Probab=93.27 E-value=1.3 Score=37.90 Aligned_cols=56 Identities=18% Similarity=-0.004 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcCCc-chhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQ-TLSV-MLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G~~-Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
.+..........+||+-|.|.|+++-.+ -+|. ++.++.+..+...+...+....+.
T Consensus 54 ~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~ 111 (292)
T PRK13595 54 YLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLY 111 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566688999999999999865433 1232 566666666655555555443333
No 58
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=93.24 E-value=0.85 Score=36.90 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcCChHHHHHc-CCcchhhhhcH
Q 044974 81 CLSVAIAFVKDLHDVEGDREH-GIQTLSVMLGK 112 (182)
Q Consensus 81 ~~~~~~~i~~di~D~egDr~~-G~~Tlpv~lG~ 112 (182)
+........||..|.|.||.+ +.+.=|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 556778899999999999995 33344443333
No 59
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=92.97 E-value=0.9 Score=38.32 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
.+...+...+...+||+.|+|-||++-. |-+|. +.-++.+..+..++..++.+..
T Consensus 53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a 111 (289)
T COG0382 53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA 111 (289)
T ss_pred HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444456678889999999999999876 45554 3334445544444444444333
No 60
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.91 E-value=1.4 Score=36.88 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCC-cchh
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGI-QTLS 107 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~-~Tlp 107 (182)
.+...+...+...+||..|.|.|+++.. |+.+
T Consensus 42 ~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 42 LLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred HHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 3445556778899999999999987543 4443
No 61
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=92.80 E-value=1.1 Score=37.78 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHc---CCcchhh-hhcHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREH---GIQTLSV-MLGKEKVFWLSVYM 122 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~---G~~Tlpv-~lG~~~a~~l~~~l 122 (182)
+...+...+-.++||+.|.|.|++. ..|.+|. ++.++.+..+...+
T Consensus 43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (282)
T TIGR01475 43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS 92 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence 3444567788899999999999986 3355555 56677777666544
No 62
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=92.54 E-value=1.1 Score=37.53 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCC-cchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGI-QTLSV-MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~ 129 (182)
...+...+-.++||+-|.|-|+++.. |.+|. +.-++.+..+...+..++.+.
T Consensus 46 ~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~ 99 (276)
T PRK12882 46 AVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL 99 (276)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 33445667789999999999997542 33333 345677776666666555443
No 63
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=92.48 E-value=1.8 Score=36.29 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
+...+...+-.++||+.|.|-||+.. -|.+|. ++-++.+..+...+..++....
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~ 99 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILS 99 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 33445567778999999999999753 344443 5567777777766666655433
No 64
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=91.69 E-value=1.9 Score=36.96 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=26.4
Q ss_pred HhhcCChHHHHHcCCcchhh---hhcHHHHHHHHHHHHHHHHHH
Q 044974 89 VKDLHDVEGDREHGIQTLSV---MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 89 ~~di~D~egDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+||+.|+|-||.+ +++-|. ++-++.+..+...+..++...
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~~lal~l 114 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITGILALIL 114 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999964 466664 455666665555444444433
No 65
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=91.26 E-value=1.6 Score=37.90 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=33.0
Q ss_pred HHHHhhcCChHHHHHcCC-cchhh-hhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 86 IAFVKDLHDVEGDREHGI-QTLSV-MLGKEKVFWLSVYMLSTAYGAAVLVG 134 (182)
Q Consensus 86 ~~i~~di~D~egDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~~~ 134 (182)
-.++||+-|.|.|++.+. |.+|. ++-+|.+..++..+..++......++
T Consensus 66 ~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~ 116 (331)
T PRK12392 66 SQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLG 116 (331)
T ss_pred HhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999997543 33333 45577777777766666665554443
No 66
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=90.66 E-value=1.7 Score=36.60 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~ 127 (182)
.+...+-.++||+.|.|-|++..+ |.+|. ++-++.+..+...+..++.
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~ 106 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIAL 106 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 345667789999999999986442 44444 4556666666655555544
No 67
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=90.59 E-value=3 Score=35.47 Aligned_cols=50 Identities=16% Similarity=-0.047 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCC-cchhhhhc---HHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGI-QTLSVMLG---KEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~-~Tlpv~lG---~~~a~~l~~~l~~~~~ 127 (182)
...+...+-..+||+.|.|-|++..+ ++=|..=| ++.+..+...+..++.
T Consensus 53 g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~ 106 (289)
T PLN02809 53 GALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGL 106 (289)
T ss_pred HHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33445667789999999999997643 34444445 5555554444444333
No 68
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.92 E-value=2.7 Score=35.66 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred HHHhhcCChHHHHHcCCcc
Q 044974 87 AFVKDLHDVEGDREHGIQT 105 (182)
Q Consensus 87 ~i~~di~D~egDr~~G~~T 105 (182)
..+||+.|.|.||++.+|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 3479999999999988775
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=89.88 E-value=2.8 Score=35.03 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCChHHHHHcCCcchhhh---hcHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHGIQTLSVM---LGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~---lG~~~a~~l~~~l~~~~~ 127 (182)
...+-.++||+-|.|.|+.++ ++=|.. +-++.+..+...+..++.
T Consensus 49 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 49 GCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 345678999999999999754 443433 556777776655555443
No 70
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=89.79 E-value=4 Score=34.88 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCChHHHHHc------------CCcchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974 83 SVAIAFVKDLHDVEGDREH------------GIQTLSV-MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 83 ~~~~~i~~di~D~egDr~~------------G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
..| .++||+-|.|-|+++ .-|.+|. +.-+|.+..+...+..++..+.
T Consensus 55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~ 114 (297)
T PRK12871 55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALI 114 (297)
T ss_pred HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 444 699999999999753 1233332 5667777777766666555443
No 71
>PRK13591 ubiA prenyltransferase; Provisional
Probab=89.76 E-value=4.3 Score=35.04 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
.+.+...+||.-|.|.|+.+ +. -|-|+ .++.+..+..++.+..+.
T Consensus 70 ~~~s~~~iNd~~D~eiD~IN-~P---~r~~~--s~~~a~~ls~la~llGl~ 114 (307)
T PRK13591 70 IIYSVYTLDRALDSEEDAVN-RS---ELIGS--NKKIGLLVSLLAFLLGTY 114 (307)
T ss_pred HHHHHHHHhhhccchhhhcc-Cc---ccccc--CHHHHHHHHHHHHHHHHH
Confidence 45778999999999999875 33 34443 333344444444443333
No 72
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.18 E-value=2.6 Score=35.49 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHcCC---cchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEGDREHGI---QTLS-VMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~egDr~~G~---~Tlp-v~lG~~~a~~l~~~l~~~~~~~ 129 (182)
.+...+-..+||+.|.|-|++..+ |-+| -+..++.+..+...+..++...
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l 103 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGV 103 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999986543 3333 2444666666655554444433
No 73
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=89.07 E-value=4.2 Score=34.57 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCC------cchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGI------QTLSV-MLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~------~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
...+.-.+-...||..|.|.|+.... |++|. ++-+|.+......+..++....+.
T Consensus 48 ~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~ 109 (296)
T PRK05951 48 GYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWS 109 (296)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667889999999776665542 33332 356777777776666665544443
No 74
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=89.00 E-value=1.5 Score=36.90 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 81 ~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+...+-..+||.-|.|.|++.+ .|.+|. ++-+|.+.++...+..++.+.
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l 99 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999764 333333 455667776665555554433
No 75
>PRK08238 hypothetical protein; Validated
Probab=88.17 E-value=3.5 Score=37.61 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHcCC-cchh---hhhcHHHHHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEGDREHGI-QTLS---VMLGKEKVFWLSVYMLSTAYGAAV 131 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~egDr~~G~-~Tlp---v~lG~~~a~~l~~~l~~~~~~~~i 131 (182)
.++...+..++||+-|.|.||++-+ |.=| -++..+.+..++..+..++..+..
T Consensus 235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~ 291 (479)
T PRK08238 235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL 291 (479)
T ss_pred HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999732 2223 356667777766666655554333
No 76
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=88.16 E-value=3.9 Score=34.98 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcCC-cchh---hhhcHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHGI-QTLS---VMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G~-~Tlp---v~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..++...+-.++||+.|.|.||++.+ |.=| -++.++.+..+...+..++...
T Consensus 51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~ 107 (294)
T PRK12873 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFV 107 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333445667789999999999997765 2333 3556677777666555554443
No 77
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.13 E-value=3.4 Score=35.08 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHcC---Ccchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEGDREHG---IQTLS-VMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~egDr~~G---~~Tlp-v~lG~~~a~~l~~~l~~~~~~~ 129 (182)
..+...+-.++||+.|.|-||+.. -|.+| -++-++.+..+...+..++...
T Consensus 55 ~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l 109 (290)
T PRK12870 55 ALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGL 109 (290)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 334566778999999999998643 23444 3456666666665555554433
No 78
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=87.84 E-value=3.3 Score=35.51 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~ 129 (182)
...+-.++||+-|.|.||+++ .|.+|. ++.++.+..+...+..++..+
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 126 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAV 126 (314)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999753 333432 556777777766666555543
No 79
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=87.15 E-value=4.2 Score=34.23 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
...+...+-..+||+.|.|-|+++. -|.+|. +..++.+..+...+..++....
T Consensus 44 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~ 100 (279)
T PRK12869 44 GGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALG 100 (279)
T ss_pred HHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3334466778999999999999854 355554 4577777776665555544443
No 80
>PLN00012 chlorophyll synthetase; Provisional
Probab=87.09 E-value=7.1 Score=34.55 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCChHHHHHcC-Ccchh-hhhcHHHHHHHHHHHHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEGDREHG-IQTLS-VMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 81 ~~~~~~~i~~di~D~egDr~~G-~~Tlp-v~lG~~~a~~l~~~l~~~~~~ 128 (182)
+...+-.++||+-|.|.|++.+ .|.+| -++.++.+......+...+..
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~ 183 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLG 183 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 3456678999999999998874 23333 234455665544444443333
No 81
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=86.05 E-value=7.8 Score=32.56 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhcCChHH--HHH---cCCcchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEG--DRE---HGIQTLSV-MLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~eg--Dr~---~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
+...+...+-..+||..|.|. |++ .+.|.+|. ++-+|++......+..++.+..+.
T Consensus 45 l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~ 106 (293)
T PRK06080 45 LAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLY 106 (293)
T ss_pred HHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667889999999953 532 23344443 345677777766666655544443
No 82
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=85.67 E-value=6.5 Score=32.95 Aligned_cols=51 Identities=8% Similarity=-0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~ 128 (182)
...+...+-..+||+.|.|-|++.. .|.+|. ++-+|.+..++..+..++..
T Consensus 43 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~ 97 (280)
T TIGR01473 43 GTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVA 97 (280)
T ss_pred HHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3344566778999999999999743 355544 55677777776666555444
No 83
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=85.47 E-value=6.3 Score=33.42 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~~ 129 (182)
...+...+-.++||+.|.|-|++.. -|.+|. ++.+|.+..+...+..++.+.
T Consensus 52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l 107 (296)
T PRK04375 52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLL 107 (296)
T ss_pred HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3334566778999999999999743 344443 557777777766555554443
No 84
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=85.45 E-value=6.7 Score=33.02 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 81 ~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~ 128 (182)
+...+-.++||+.|.|-||+..+ |.+|. ++-++++..+...+..++..
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~ 104 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFL 104 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 34567789999999999985432 44443 45667777666666555543
No 85
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=85.23 E-value=11 Score=32.32 Aligned_cols=43 Identities=19% Similarity=0.055 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLS 119 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~ 119 (182)
+...+...+-..+||+.|.|-|++.- -|.+|. +.-++.+..+.
T Consensus 56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 33344556677899999999999773 244443 35566666554
No 86
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=85.03 E-value=5.9 Score=33.95 Aligned_cols=51 Identities=6% Similarity=0.034 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~ 128 (182)
...+...+-..+||+.|.|-|++..+ |-+|. ++.++.+..+...+..++..
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ 109 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFG 109 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34445678899999999999987543 45553 55667777766655555544
No 87
>PRK11383 hypothetical protein; Provisional
Probab=83.47 E-value=11 Score=28.83 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhhh--hhhHHHHHHHHHHhhc-cchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974 7 LVLGVIAWLFISTAYSAQLPFLRWK--GNSFLAAVCMVFMCGL-LPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS 83 (182)
Q Consensus 7 l~~~~~~~~~lg~~YS~~~pP~rlK--~~p~~~~l~v~~~~g~-~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 83 (182)
.+.+++.+++..+.+.++. |-| ..|.. ....+..|.. +..++.+.. ++...+...+.-.+....|+....
T Consensus 44 Y~~vl~lglF~avs~QK~v---RD~~egi~vt-~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLF 116 (145)
T PRK11383 44 YFAVLVLGLFSAASYQKTV---RDKYEGIPTT-SIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLF 116 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhcccCCChh-HHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHH
Confidence 3445566667666666322 444 45633 3334444432 222232221 234444444444455555555567
Q ss_pred HHHHHHhhcCChHHHH
Q 044974 84 VAIAFVKDLHDVEGDR 99 (182)
Q Consensus 84 ~~~~i~~di~D~egDr 99 (182)
.++.+-|+.||.+.++
T Consensus 117 gai~vQKn~RD~~~~~ 132 (145)
T PRK11383 117 GAVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHHhhhhhhhhcc
Confidence 7899999999996554
No 88
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=82.98 E-value=13 Score=32.00 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHc-----CCcchh-hhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEGDREH-----GIQTLS-VMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATL 153 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~egDr~~-----G~~Tlp-v~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
.+.-.+-++.||..|.|.|... +.|+++ -.+-+|++++....+..++.++.+.+....+ .....+|....
T Consensus 49 ~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g----~~~l~igl~g~ 124 (317)
T PRK13387 49 LAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS----WLLLVIGLICF 124 (317)
T ss_pred HHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHH
Confidence 3356788999999999875443 333333 2345677777777777777665555443322 12334444444
Q ss_pred HHHHHHH
Q 044974 154 LLFLWHR 160 (182)
Q Consensus 154 ~~~l~~~ 160 (182)
.....|.
T Consensus 125 ~~~~~Yt 131 (317)
T PRK13387 125 AIGILYT 131 (317)
T ss_pred HHhhhhc
Confidence 4444453
No 89
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=82.68 E-value=17 Score=30.87 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcCChHH-----HHHcCCcchhh-hhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----DREHGIQTLSV-MLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLL--SKLVTIIG 149 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----Dr~~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 149 (182)
.+.+.-.+.++.||..|.+. ||..+.|.++. .+-+|..+..+..+..++.++.+.+....+... ......+|
T Consensus 36 ~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg 115 (284)
T TIGR00751 36 TAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG 115 (284)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH
Confidence 33446678899999999844 44444555543 344567777776666666555554433222100 01234455
Q ss_pred HHHHHHHHHHHH
Q 044974 150 HATLLLFLWHRA 161 (182)
Q Consensus 150 ~~~~~~~l~~~~ 161 (182)
.........|..
T Consensus 116 ~~~~~~~~~Yt~ 127 (284)
T TIGR00751 116 ALCIAAAITYTV 127 (284)
T ss_pred HHHHHHhHhhcC
Confidence 554445555653
No 90
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=82.37 E-value=18 Score=30.73 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWL 118 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l 118 (182)
...+...+-..+||+.|.|-|++.. -|-+|. ++-++.+..+
T Consensus 50 ~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 50 AMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence 3334455667899999999999764 233333 2346666554
No 91
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=82.15 E-value=17 Score=30.79 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=41.8
Q ss_pred chHHHHHHH-HHHHHHHHHHHHHhhcCChHH--HHHcCCcchhhhhc-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 044974 68 ITKPLMFAS-AFMTCLSVAIAFVKDLHDVEG--DREHGIQTLSVMLG-KEKVFWLSVYMLSTAYGAAVLVGASSSFLLSK 143 (182)
Q Consensus 68 ~~~~~~~l~-~~~~~~~~~~~i~~di~D~eg--Dr~~G~~Tlpv~lG-~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 143 (182)
+++....+. ..+.+.-.+.+..||..|.+. |+++- ++.....| ++..++....+..++.+..+.+....+ .
T Consensus 32 f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~----~ 106 (285)
T TIGR02235 32 FHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRWQ----I 106 (285)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----H
Confidence 344433332 333445668899999999888 76422 12211122 344444444444444444433333221 1
Q ss_pred HHHHHHHHHHHHHHHH
Q 044974 144 LVTIIGHATLLLFLWH 159 (182)
Q Consensus 144 ~~~~~~~~~~~~~l~~ 159 (182)
....+|.........|
T Consensus 107 ~~l~lg~~g~~~~~~Y 122 (285)
T TIGR02235 107 TVLALVGLCCFLGYLY 122 (285)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344454444444445
No 92
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=81.90 E-value=17 Score=30.84 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYML 123 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~ 123 (182)
...+-..+||+-|.|-|++.. -|-+|. ++-++.+..+...+.
T Consensus 59 ~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~ 104 (291)
T PRK12874 59 ARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNA 104 (291)
T ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 445557899999999999884 344443 445566655554444
No 93
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=81.81 E-value=5.7 Score=33.81 Aligned_cols=51 Identities=4% Similarity=-0.033 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHcCC---cchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEGDREHGI---QTLS-VMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~egDr~~G~---~Tlp-v~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+.+...+-..+||+-|.|-|++.-+ |-+| -+.-++.+..+...+..+...+
T Consensus 46 ~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~ 100 (286)
T PRK12895 46 AVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEIC 100 (286)
T ss_pred HHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345566779999999999988722 2233 3556777777666665555443
No 94
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=81.58 E-value=12 Score=32.18 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSV 120 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~ 120 (182)
.+.+.+.-.+-..+||+-|.|-|++.-+ |-+|. +..++.+..+..
T Consensus 53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~ 101 (300)
T PRK12876 53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLT 101 (300)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 3444445556678999999999998863 33443 344556655553
No 95
>PLN02776 prenyltransferase
Probab=81.07 E-value=18 Score=31.70 Aligned_cols=51 Identities=10% Similarity=-0.008 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC----CcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG----IQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G----~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+...+...+-..+||+.|.|-|++.. +..-.-++.++.+..+...+..++.
T Consensus 36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~ 90 (341)
T PLN02776 36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGV 90 (341)
T ss_pred HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34444566778999999999998844 2223345667777776655555444
No 96
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=80.91 E-value=14 Score=31.69 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=36.7
Q ss_pred chHHHHHHH-HHHHHHHHHHHHHhhcCChH--HHHHcCCcchhhh-hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 68 ITKPLMFAS-AFMTCLSVAIAFVKDLHDVE--GDREHGIQTLSVM-LGKEKVFWLSVYMLSTAYGAAVLVGA 135 (182)
Q Consensus 68 ~~~~~~~l~-~~~~~~~~~~~i~~di~D~e--gDr~~G~~Tlpv~-lG~~~a~~l~~~l~~~~~~~~i~~~~ 135 (182)
+++...++. +...+.-.+-+..||..|.+ .|+++- +..+.. ..+|...++...+..++.+..+.+..
T Consensus 45 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~ 115 (304)
T PRK07419 45 FRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-HSVVNLTGNKSLVFWLANLFLLLGLLGILAIAL 115 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445443333 33444566789999999998 576421 111111 13566666666666665555444433
No 97
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.29 E-value=15 Score=31.54 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC---Ccchh-hhhcHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG---IQTLS-VMLGKEKVFWLSVYMLST 125 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G---~~Tlp-v~lG~~~a~~l~~~l~~~ 125 (182)
+...+...+-.++||+.|.|-|++.. -|-+| -++.++.+..+...+..+
T Consensus 79 l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 131 (314)
T PRK12878 79 VGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALV 131 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 34444566778999999999998643 22233 234466665544444333
No 98
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=78.23 E-value=2.1 Score=34.42 Aligned_cols=37 Identities=38% Similarity=0.510 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCChHHHH----------HcCCcchhhhhcHHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGDR----------EHGIQTLSVMLGKEKVFWL 118 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr----------~~G~~Tlpv~lG~~~a~~l 118 (182)
+..++-+.||++|+.+|. +.|+.|+|....++.....
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 456789999999999988 8999999999885554444
No 99
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=75.82 E-value=22 Score=30.03 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVY 121 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~ 121 (182)
+.+.+...+-..+||+.|.|-|++.. -|.+|. ++-++.+..+...
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~ 94 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALV 94 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 33444556778999999999999874 454543 3455556555443
No 100
>PRK10581 geranyltranstransferase; Provisional
Probab=74.81 E-value=3.6 Score=35.12 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTA 126 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~ 126 (182)
+---+..++.+..|+.|+.+ |.+.|+.|+|+..|.+.+...+.-..--+
T Consensus 211 ~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A 270 (299)
T PRK10581 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA 270 (299)
T ss_pred HHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678899999999854 56789999999999999888665554433
No 101
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=68.36 E-value=46 Score=28.25 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=15.4
Q ss_pred HHHhhcCChHHHHHcCCcchh
Q 044974 87 AFVKDLHDVEGDREHGIQTLS 107 (182)
Q Consensus 87 ~i~~di~D~egDr~~G~~Tlp 107 (182)
.-+||.-|.|.|+.+..|.=|
T Consensus 51 ~~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 51 YGINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred HhhhhhhhhhcCCCCcccCCC
Confidence 345999999999887655433
No 102
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=67.27 E-value=51 Score=24.71 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 044974 143 KLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYM 177 (182)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~y~ 177 (182)
+...++.++..+..-.++++ ++++-.+|||.
T Consensus 45 gli~~LPn~~Fa~~aF~~~~----~~~~~~~sFy~ 75 (126)
T PRK06099 45 FLSAFLPFCLFVYWIFFRKQ----KNSSKLTAFYR 75 (126)
T ss_pred hHHHHHhHHHHHHHHHHhcc----chHHHHHHHHH
Confidence 34556667666655555554 57777999996
No 103
>PLN02878 homogentisate phytyltransferase
Probab=67.19 E-value=31 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHhhcCChHHHHHcCCcchhhhhc---HHHHHHHHHHHHHHHHH
Q 044974 87 AFVKDLHDVEGDREHGIQTLSVMLG---KEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 87 ~i~~di~D~egDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~~~ 128 (182)
-=+||+.|+|-|| -|+...|.-=| ++.+..++..+..++..
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3489999999996 45678887655 45555555544444433
No 104
>PLN02922 prenyltransferase
Probab=65.44 E-value=78 Score=27.25 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=19.4
Q ss_pred chHHHHHHH-HHHHHHHHHHHHHhhcCChHH
Q 044974 68 ITKPLMFAS-AFMTCLSVAIAFVKDLHDVEG 97 (182)
Q Consensus 68 ~~~~~~~l~-~~~~~~~~~~~i~~di~D~eg 97 (182)
+++...++. +.+.+.-.+-++.||..|.+.
T Consensus 48 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~ 78 (315)
T PLN02922 48 FDARRYGTLLLSSVLVITWLNLSNDAYDADT 78 (315)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhHhcc
Confidence 445443332 334446678899999999887
No 105
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=58.91 E-value=51 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044974 111 GKEKVFWLSVYMLSTAYGAAVLVGASSS 138 (182)
Q Consensus 111 G~~~a~~l~~~l~~~~~~~~i~~~~~~~ 138 (182)
|.|.+-++...++.+..+...+.|+...
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888887654
No 106
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=54.05 E-value=11 Score=31.07 Aligned_cols=42 Identities=31% Similarity=0.321 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLS 119 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~ 119 (182)
+..-+..++-+.+|+.|..+ |.+.|+.|+|+..+.+++..-.
T Consensus 174 ~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~ 226 (260)
T PF00348_consen 174 FGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREEL 226 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHH
Confidence 33345568889999999886 5678999999999988865533
No 107
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=53.35 E-value=9.4 Score=32.90 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCChHHH-----------HHcCCcchhhhhcHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEGD-----------REHGIQTLSVMLGKEKVFW 117 (182)
Q Consensus 82 ~~~~~~i~~di~D~egD-----------r~~G~~Tlpv~lG~~~a~~ 117 (182)
...++.+..|+.|+.+| .+.|++|+|+.++.+++..
T Consensus 206 lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 206 LGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred hhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 44688999999999985 5668999999999997665
No 108
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=53.29 E-value=1.3e+02 Score=24.79 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 044974 73 MFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL 132 (182)
Q Consensus 73 ~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~ 132 (182)
.-++..+=++-.+..+..|+.|-. +.++|..|.-.++|.+.+....-.++..++-.+.-
T Consensus 36 ~~~a~avEliH~asLIhDDI~D~s-~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~ 94 (260)
T PF00348_consen 36 IPLAAAVELIHAASLIHDDIIDNS-DLRRGKPTVHKKFGNAIAILAGDYLLALAFELLAR 94 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-SEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccc-ccCCCCccccccccccchhhhchHHHHHHHHHHHH
Confidence 344445555667888999998865 78899999999999999999888887777765543
No 109
>CHL00151 preA prenyl transferase; Reviewed
Probab=52.41 E-value=8.8 Score=33.02 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 81 CLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
-+..++.+.+|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 206 ~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 206 HLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 35578899999999865 67889999999998664
No 110
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=51.33 E-value=12 Score=32.14 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCChH-----------HHHHcCCcchhhhhcHHH
Q 044974 80 TCLSVAIAFVKDLHDVE-----------GDREHGIQTLSVMLGKEK 114 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~e-----------gDr~~G~~Tlpv~lG~~~ 114 (182)
.-+..++-+.+|+.|+. .|.+.|+.|+|+.+..+.
T Consensus 200 ~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 200 YYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 33556888999999986 567889999999998754
No 111
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=48.13 E-value=1.8e+02 Score=25.12 Aligned_cols=62 Identities=5% Similarity=-0.076 Sum_probs=42.0
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHhhcCChHHHHHc----CCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 69 TKPLMFA-SAFMTCLSVAIAFVKDLHDVEGDREH----GIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 69 ~~~~~~l-~~~~~~~~~~~~i~~di~D~egDr~~----G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
++..++. .+-..+-..+-..+|+.-|.|-|++- ++.+..-+.-++++..+...+..+....+
T Consensus 50 ~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l 116 (304)
T COG0109 50 NPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLL 116 (304)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 4443333 23344456677899999999999764 45556667788888888777766666555
No 112
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=46.53 E-value=21 Score=30.76 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCChH-----------HHHHcCCcchhhhhcHHH
Q 044974 80 TCLSVAIAFVKDLHDVE-----------GDREHGIQTLSVMLGKEK 114 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~e-----------gDr~~G~~Tlpv~lG~~~ 114 (182)
-.+..++-+.+|+.|+. .|.++|+.|+|+.+..+.
T Consensus 204 ~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~ 249 (322)
T TIGR02749 204 KHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEE 249 (322)
T ss_pred HHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhc
Confidence 34557889999999976 567899999999988654
No 113
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=45.71 E-value=15 Score=28.24 Aligned_cols=33 Identities=42% Similarity=0.568 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCChHHHHHc--CCcchhhhhcHHH
Q 044974 82 LSVAIAFVKDLHDVEGDREH--GIQTLSVMLGKEK 114 (182)
Q Consensus 82 ~~~~~~i~~di~D~egDr~~--G~~Tlpv~lG~~~ 114 (182)
......+.||++|++.|.+. |+.|+|..+-.+.
T Consensus 152 ~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 152 LGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 34567899999999999999 8999998775554
No 114
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=43.71 E-value=21 Score=29.43 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCChH-----------HHHHcCCcchhhhhcH
Q 044974 81 CLSVAIAFVKDLHDVE-----------GDREHGIQTLSVMLGK 112 (182)
Q Consensus 81 ~~~~~~~i~~di~D~e-----------gDr~~G~~Tlpv~lG~ 112 (182)
.+..++.+.+|+.|+. .|.++|+.|+|+.++.
T Consensus 180 ~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l 222 (259)
T cd00685 180 NLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL 222 (259)
T ss_pred HHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH
Confidence 3456778999999875 4677899999999877
No 115
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=38.41 E-value=1e+02 Score=26.44 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHH
Q 044974 73 MFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAV 131 (182)
Q Consensus 73 ~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i 131 (182)
.-++..+=+.-....+-.|+-| +.|.++|..|...++|...+....-.++..++-.+.
T Consensus 69 ~~~aaavEliH~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~ 126 (322)
T COG0142 69 LDLAAAIELIHTASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLS 126 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHH
Confidence 3344444445667778899966 568999999999999999999888877777765554
No 116
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=37.65 E-value=2.3e+02 Score=24.52 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCChHH------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEG------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAV 131 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i 131 (182)
++....+..||..|.+. |-+.+-+.+-++=+.|+...+...+...+-...+
T Consensus 55 ~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~ll 111 (303)
T COG1575 55 LLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALL 111 (303)
T ss_pred HHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHH
Confidence 35567788899888753 2344445566666666666555444444443333
No 117
>PLN02890 geranyl diphosphate synthase
Probab=36.99 E-value=24 Score=31.76 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCChHHH-----------HHcCCcchhhhh
Q 044974 78 FMTCLSVAIAFVKDLHDVEGD-----------REHGIQTLSVML 110 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egD-----------r~~G~~Tlpv~l 110 (182)
|--.+..++-+.+|+.|+.+| .++|+.|+|+.+
T Consensus 296 fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~ 339 (422)
T PLN02890 296 YGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILF 339 (422)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHH
No 118
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=36.98 E-value=1e+02 Score=25.28 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
++..+=++-.+..+..|+.|-. +.++|..|.-.++|...|....-.++..++-.+
T Consensus 44 la~aiEllh~asLIhDDI~D~s-~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l 98 (259)
T cd00685 44 LAAAIELLHTASLVHDDVMDNS-DLRRGKPTVHKVFGNATAILAGDYLLARAFELL 98 (259)
T ss_pred HHHHHHHHHHHHHHHhhhccCC-cccCCCCcHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3444445667888999998866 467999999999999998887766666555433
No 119
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=34.85 E-value=86 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=+.-.+..+-.|+.|-. |.++|..|+-.++|.+.+....-.++..++-
T Consensus 69 A~aiEliH~asLiHDDI~D~s-~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~ 120 (319)
T TIGR02748 69 AVALELIHMASLVHDDVIDDA-DLRRGRPTIKSKWGNRIAMYTGDYLFAKSLE 120 (319)
T ss_pred HHHHHHHHHHHHHhccccCCC-CCCCCCcCHHHHhChHHHHHHHHHHHHHHHH
Confidence 333334566778999999866 6777999999999999998877666655543
No 120
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=32.99 E-value=11 Score=30.15 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhh
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSV 108 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv 108 (182)
+.+|+..|..-+.|.+.+..|+..|.-|+-.
T Consensus 52 v~~c~fva~~n~edwee~iFdK~kg~V~lk~ 82 (187)
T PF15169_consen 52 VAGCLFVALQNMEDWEEAIFDKSKGKVTLKY 82 (187)
T ss_pred HHHHHHHHHhcchhhhheeEeccCCEEEEEe
Confidence 3344555667778888888999999876643
No 121
>PLN02857 octaprenyl-diphosphate synthase
Probab=31.97 E-value=30 Score=31.09 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcCChH-----------HHHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVE-----------GDREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~e-----------gDr~~G~~Tlpv~lG~~~ 114 (182)
|---+..++.+..|+.|+. .|.+.|+.|+|+.+-.++
T Consensus 296 fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~~ 343 (416)
T PLN02857 296 YGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEK 343 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHhc
Confidence 3334567889999999986 456799999999885543
No 122
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=30.91 E-value=3e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=12.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHH
Q 044974 109 MLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 109 ~lG~~~a~~l~~~l~~~~~~~ 129 (182)
|+|+|+...+...+..++.+.
T Consensus 63 r~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HhCchHHHHHHHHHHHHHHHH
Confidence 467777776665555554433
No 123
>PRK12768 CysZ-like protein; Reviewed
Probab=29.29 E-value=2.3e+02 Score=23.48 Aligned_cols=41 Identities=5% Similarity=-0.006 Sum_probs=23.6
Q ss_pred HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHH
Q 044974 85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125 (182)
Q Consensus 85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~ 125 (182)
+-..-.+..|+..||..+.+..=..+.+++......+....
T Consensus 160 awLl~~ey~d~a~~r~~~~~e~r~~l~~~r~~~~~fG~~~a 200 (240)
T PRK12768 160 GYLLGREFFEFAAMRFRSEAEAKAFRRKHATTVFLAGLVIA 200 (240)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhcccHHHHHHHHHH
Confidence 44455566688888766555555556666665544444333
No 124
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=29.22 E-value=58 Score=28.06 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCh-----------HHHHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDV-----------EGDREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~-----------egDr~~G~~Tlpv~lG~~~ 114 (182)
|--.+..++-+.+|+.|+ -.|.+.|+.|+|+....++
T Consensus 199 ~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~ 246 (323)
T PRK10888 199 YGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHH 246 (323)
T ss_pred HHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHh
No 125
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=28.33 E-value=3.5e+02 Score=22.49 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=18.6
Q ss_pred HHHHHhhcCChHHHHH-cCCcchhhhhcHHHHHHHH
Q 044974 85 AIAFVKDLHDVEGDRE-HGIQTLSVMLGKEKVFWLS 119 (182)
Q Consensus 85 ~~~i~~di~D~egDr~-~G~~Tlpv~lG~~~a~~l~ 119 (182)
+-.+--|..|+..||+ ...+.-=..+.+++...+.
T Consensus 174 awll~~ey~d~~~~r~~~~~~~~r~~l~~~r~~~~g 209 (251)
T PRK04949 174 AWMMAIQYCDYPFDNHKVSFKDMRAALRQKRGTSLQ 209 (251)
T ss_pred HHHHHHHHhHhHHHHCCCCHHHHHHHHHHhhhHHHH
Confidence 3444556788899976 3333333344444444433
No 126
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=27.33 E-value=2.7e+02 Score=21.93 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHcCCcchhhh-hcHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVM-LGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~-lG~~~a~~l~~~l~~~~~ 127 (182)
..+-+.-....+..|+.|-. +.+.|.+|.-.+ +|.+.+....-.++..++
T Consensus 25 ~ave~l~~~~li~DDI~D~~-~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~ 75 (236)
T cd00867 25 AAVELLHAASLVHDDIVDDS-DLRRGKPTAHLRRFGNALAILAGDYLLARAF 75 (236)
T ss_pred HHHHHHHHHHHHHcccccCC-ccCCCCccHhHHhhCHhHHHHHHHHHHHHHH
Confidence 33344455667899999954 555788898888 999888665444443333
No 127
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=27.29 E-value=38 Score=19.54 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred HhhcCChHHHHHcCCcchhhhhcHHHHHHHH
Q 044974 89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLS 119 (182)
Q Consensus 89 ~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~ 119 (182)
+-|+.=+.||...|++.+|- .|+|+|..+.
T Consensus 4 ~~~~~~L~GD~~dni~Gv~g-iG~ktA~~ll 33 (36)
T smart00279 4 LIDYAILVGDYSDNIPGVKG-IGPKTALKLL 33 (36)
T ss_pred HHHHHHHhCcCCCCCCCCCc-ccHHHHHHHH
Confidence 34455567899998888885 8999998764
No 128
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=3.7e+02 Score=22.19 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhc-CCc-----cchHHHHHHHHHHHHHHHHHHHH
Q 044974 16 FISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLG-RPM-----EITKPLMFASAFMTCLSVAIAFV 89 (182)
Q Consensus 16 ~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g-~~~-----~~~~~~~~l~~~~~~~~~~~~i~ 89 (182)
+..=.|-.+..-.|-|++-++..+.+...|.++-..|+ |+..+..-. .+. +-+....+...+.++++++..-.
T Consensus 86 lvlD~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGF-c~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~ 164 (233)
T KOG4016|consen 86 LVLDVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGF-CFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAV 164 (233)
T ss_pred HHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 33344443356678899999999988888886655554 443222111 111 11233445556777888888888
Q ss_pred hhcCChHHHHH
Q 044974 90 KDLHDVEGDRE 100 (182)
Q Consensus 90 ~di~D~egDr~ 100 (182)
.+.||.|.|..
T Consensus 165 lA~qR~~~g~~ 175 (233)
T KOG4016|consen 165 LAFQRYRIGAD 175 (233)
T ss_pred HHHHHHHhcCC
Confidence 88888887653
No 129
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=26.22 E-value=1.6e+02 Score=23.53 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=34.7
Q ss_pred HHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 87 AFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA 135 (182)
Q Consensus 87 ~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~ 135 (182)
....|.--.=.=|+.|++ ..-+.+.|||..=..+....+.+.......
T Consensus 139 ~~~gD~~A~l~G~~fGk~-~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~ 186 (259)
T PF01148_consen 139 LGIGDSFAYLVGRRFGKH-LAPKISPKKTWEGSIAGFISSFIISFLLLY 186 (259)
T ss_pred HHHHHHHHHHHHHhcCCC-cCCCCCCCCCHHHHhHHHHHHHHHHHHHHH
Confidence 344555555566889988 777789999998888888877777665443
No 130
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=25.92 E-value=2.7e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 044974 144 LVTIIGHATLLLFLWHRARNVDLSNNESIFSFYM 177 (182)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~y~ 177 (182)
...+++++..+....+ |+-- .+.++.+++||.
T Consensus 42 l~~~lP~~~Fa~~~fr-~~g~-~~~~~i~~~fy~ 73 (124)
T PRK05760 42 LIAVLANAYFAHCAFR-FSGA-RAAKAIVRSFYA 73 (124)
T ss_pred HHHHHHHHHHHHHHHH-Hccc-ccHHHHHHHHHH
Confidence 4455555555554443 2221 222566889985
No 131
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=22.04 E-value=2.7e+02 Score=22.71 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=32.4
Q ss_pred hhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974 90 KDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS 136 (182)
Q Consensus 90 ~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~ 136 (182)
+.+.+.++|+..+.-.-|.-+|=+++..+....-.+.-++++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iC 127 (211)
T PF07062_consen 81 EKVDNCDGNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGIC 127 (211)
T ss_pred HHHhhcccCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556668999998899999998888876655555544444544443
No 132
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=21.84 E-value=3.3e+02 Score=23.32 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+-.+-.|+.|-. |.++|..|.-.++|.+.|....-.++..++-.
T Consensus 73 A~avEliH~asLiHDDiiD~s-~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~ 125 (322)
T TIGR02749 73 AEITEMIHTASLVHDDVIDES-DTRRGIETVHSLFGTRVAVLAGDFLFAQASWY 125 (322)
T ss_pred HHHHHHHHHHHHHHcccccCc-cccCCCccHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 344444556778899998865 88899999999999999998776666655543
No 133
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=3.4e+02 Score=19.48 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=30.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 044974 110 LGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLF 156 (182)
Q Consensus 110 lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
=|.|+|-+...+.++.+-++..+.|+... .++...|..+.+.+..+
T Consensus 19 ~gQkkaEr~~q~ilti~aiVg~i~Gf~~Q-qls~tvy~vg~~~v~t~ 64 (101)
T KOG4112|consen 19 PGQKKAERFQQLILTIGAIVGFIYGFAQQ-QLSVTVYIVGAGFVFTL 64 (101)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 37888999999999888888888887543 22334555555544333
Done!