Query 044974
Match_columns 182
No_of_seqs 184 out of 908
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 82.2 0.95 3.3E-05 37.6 3.4 51 78-128 211-272 (304)
2 3ts7_A Geranyltranstransferase 80.9 0.93 3.2E-05 38.1 2.9 51 78-128 217-278 (324)
3 3m0g_A Farnesyl diphosphate sy 80.7 1.1 3.9E-05 37.0 3.3 51 78-128 204-265 (297)
4 3lom_A Geranyltranstransferase 80.6 1 3.6E-05 37.5 3.1 51 78-128 218-279 (313)
5 3p8r_A Geranyltranstransferase 78.2 1.2 4.2E-05 36.9 2.8 50 78-127 217-277 (302)
6 3llw_A Geranyltranstransferase 77.9 2.9 0.0001 34.7 5.0 50 78-127 218-276 (311)
7 3uca_A Geranyltranstransferase 76.6 1.3 4.5E-05 37.1 2.5 50 78-127 239-299 (324)
8 3pde_A Farnesyl-diphosphate sy 76.2 3 0.0001 34.7 4.6 52 78-129 213-275 (309)
9 2h8o_A Geranyltranstransferase 76.0 1.5 5.3E-05 36.8 2.8 49 79-127 251-310 (335)
10 4f62_A Geranyltranstransferase 75.9 1.7 5.7E-05 36.4 3.0 52 78-129 210-272 (317)
11 3p8l_A Geranyltranstransferase 75.8 1.6 5.5E-05 36.2 2.8 50 78-127 214-274 (302)
12 1rtr_A Geranyltranstransferase 74.4 2 6.8E-05 35.5 3.1 50 78-127 206-266 (301)
13 1rqj_A Geranyltranstransferase 71.6 6.7 0.00023 32.2 5.6 49 79-127 212-271 (299)
14 2j1p_A Geranylgeranyl pyrophos 71.0 2.3 7.8E-05 35.0 2.6 43 78-123 221-263 (293)
15 3npk_A Geranyltranstransferase 65.8 7.1 0.00024 32.0 4.6 50 78-127 203-261 (291)
16 3kra_B Geranyl diphosphate syn 61.6 12 0.0004 30.4 5.1 53 76-128 66-118 (274)
17 3oyr_A Trans-isoprenyl diphosp 56.2 6.3 0.00022 33.1 2.7 37 78-114 220-267 (345)
18 3ipi_A Geranyltranstransferase 55.6 8.8 0.0003 31.5 3.4 47 78-124 195-254 (295)
19 3aqb_B Component B of hexapren 54.5 6.8 0.00023 32.5 2.6 39 78-116 199-248 (325)
20 2e8v_A Geranylgeranyl pyrophos 53.9 8.1 0.00028 32.3 2.9 36 81-116 205-251 (340)
21 3lk5_A Geranylgeranyl pyrophos 51.7 7.9 0.00027 33.0 2.6 38 78-115 245-293 (380)
22 1v4e_A Octoprenyl-diphosphate 50.1 4.2 0.00014 33.4 0.6 37 81-117 195-241 (299)
23 3mzv_A Decaprenyl diphosphate 48.9 7.3 0.00025 32.6 1.9 38 78-115 208-256 (341)
24 3rmg_A Octaprenyl-diphosphate 48.0 12 0.0004 31.2 3.1 37 79-115 203-249 (334)
25 1wy0_A Geranylgeranyl pyrophos 47.6 10 0.00034 31.6 2.6 36 79-114 207-253 (342)
26 3pko_A Geranylgeranyl pyrophos 47.2 7.2 0.00024 32.6 1.6 36 80-115 214-260 (334)
27 2qis_A Farnesyl pyrophosphate 46.0 6.3 0.00021 33.5 1.0 38 78-115 252-299 (374)
28 3tc1_A Octaprenyl pyrophosphat 45.4 31 0.001 28.5 5.2 53 76-129 63-115 (315)
29 2q80_A Geranylgeranyl pyrophos 44.3 12 0.00042 30.6 2.6 33 82-114 181-224 (301)
30 1uby_A FPS, farnesyl diphospha 43.5 6.1 0.00021 33.5 0.6 36 80-115 247-292 (367)
31 1wmw_A Geranylgeranyl diphosph 43.1 11 0.00039 31.2 2.2 39 77-115 199-247 (330)
32 1yhl_A Farnesyl pyrophosphate 42.3 6.2 0.00021 33.2 0.4 35 81-115 241-285 (362)
33 3nf2_A Putative polyprenyl syn 42.2 15 0.00051 30.9 2.8 37 78-114 212-259 (352)
34 3tc1_A Octaprenyl pyrophosphat 42.2 9.1 0.00031 31.7 1.4 36 79-114 189-235 (315)
35 3lmd_A Geranylgeranyl pyrophos 42.2 9.7 0.00033 32.2 1.6 37 78-114 228-275 (360)
36 4dhd_A Polyprenyl synthetase; 42.1 12 0.00043 31.4 2.3 36 80-115 215-262 (358)
37 3apz_A Geranyl diphosphate syn 41.4 72 0.0025 26.4 6.9 52 76-128 93-144 (348)
38 2ihi_A Pyrophosphate synthase; 40.3 6.9 0.00023 33.6 0.4 35 81-115 277-321 (395)
39 2azj_A Geranylgeranyl pyrophos 37.9 13 0.00044 30.4 1.7 38 78-115 196-240 (289)
40 3dyh_A Farnesyl pyrophosphate 36.5 13 0.00046 31.6 1.6 36 79-114 267-312 (390)
41 3qkc_B Geranyl diphosphate syn 36.2 66 0.0022 25.8 5.7 51 76-128 71-121 (273)
42 3apz_A Geranyl diphosphate syn 35.4 19 0.00064 30.0 2.3 37 78-114 222-269 (348)
43 3mav_A Farnesyl pyrophosphate 35.3 11 0.00038 32.0 1.0 34 82-115 278-321 (395)
44 2ftz_A Geranyltranstransferase 34.5 29 0.00099 28.2 3.3 50 78-127 201-259 (284)
45 2her_A Fragment, farnesyl pyro 34.4 9.6 0.00033 32.4 0.4 34 82-115 246-285 (368)
46 3ipi_A Geranyltranstransferase 33.0 53 0.0018 26.7 4.7 49 78-127 70-118 (295)
47 3p8l_A Geranyltranstransferase 32.7 61 0.0021 26.5 5.0 54 76-129 77-131 (302)
48 1rtr_A Geranyltranstransferase 32.2 63 0.0022 26.3 5.0 55 76-130 68-123 (301)
49 3oyr_A Trans-isoprenyl diphosp 31.2 89 0.003 26.0 5.9 50 78-128 93-142 (345)
50 3mzv_A Decaprenyl diphosphate 30.6 1.1E+02 0.0039 25.2 6.4 52 76-128 79-130 (341)
51 3lmd_A Geranylgeranyl pyrophos 30.4 99 0.0034 25.9 6.0 54 75-129 100-153 (360)
52 1wy0_A Geranylgeranyl pyrophos 30.4 54 0.0019 27.1 4.4 54 76-130 72-125 (342)
53 2q58_A Fragment, farnesyl pyro 29.0 14 0.00047 31.2 0.4 34 82-115 246-285 (368)
54 4f62_A Geranyltranstransferase 28.3 1.5E+02 0.005 24.4 6.6 53 76-128 71-124 (317)
55 3npk_A Geranyltranstransferase 28.2 1.3E+02 0.0043 24.4 6.2 53 76-128 66-119 (291)
56 2zvv_Y Cyclin-dependent kinase 26.5 23 0.00079 18.2 0.8 12 166-177 3-14 (26)
57 1wmw_A Geranylgeranyl diphosph 26.2 76 0.0026 26.0 4.5 56 74-130 63-118 (330)
58 3m0g_A Farnesyl diphosphate sy 26.0 1.1E+02 0.0038 24.8 5.4 52 76-127 67-119 (297)
59 2ftz_A Geranyltranstransferase 24.6 1.1E+02 0.0038 24.7 5.1 56 75-130 71-127 (284)
60 1rqj_A Geranyltranstransferase 24.5 1.1E+02 0.0037 24.8 5.1 55 75-129 69-124 (299)
61 4gc0_A D-xylose-proton symport 24.5 2.8E+02 0.0096 22.5 7.9 22 109-130 81-102 (491)
62 4dhd_A Polyprenyl synthetase; 23.8 79 0.0027 26.4 4.2 54 76-130 71-124 (358)
63 3uca_A Geranyltranstransferase 23.7 1.2E+02 0.0042 24.9 5.4 54 77-130 101-155 (324)
64 3lsn_A Geranyltranstransferase 23.1 1.2E+02 0.004 24.8 5.0 52 77-128 71-123 (304)
65 3pde_A Farnesyl-diphosphate sy 22.9 1.2E+02 0.0042 24.8 5.1 54 76-129 76-130 (309)
66 1v4e_A Octoprenyl-diphosphate 22.6 72 0.0025 25.9 3.7 53 76-129 67-119 (299)
67 2q58_A Fragment, farnesyl pyro 22.5 1E+02 0.0034 25.8 4.6 54 75-129 100-153 (368)
68 3pko_A Geranylgeranyl pyrophos 22.3 1E+02 0.0035 25.4 4.6 55 75-130 81-135 (334)
69 3aqb_B Component B of hexapren 21.8 63 0.0021 26.5 3.2 53 75-128 69-121 (325)
70 3p8r_A Geranyltranstransferase 20.8 1.2E+02 0.004 24.7 4.6 53 77-129 77-130 (302)
71 4fp4_A Polyprenyl synthetase; 20.7 1.9E+02 0.0063 23.4 5.8 53 76-129 74-126 (285)
72 3lom_A Geranyltranstransferase 20.6 2E+02 0.0069 23.4 6.0 54 76-129 76-130 (313)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=82.22 E-value=0.95 Score=37.58 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus 211 ~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678899999999976 5678999999999999999877666555443
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=80.95 E-value=0.93 Score=38.05 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+.-.+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus 217 ~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~ 278 (324)
T 3ts7_A 217 YAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALE 278 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578899999999866 6788999999999999999877666555443
No 3
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=80.70 E-value=1.1 Score=37.00 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus 204 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~ 265 (297)
T 3m0g_A 204 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEA 265 (297)
T ss_dssp HHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345568899999999976 5678999999999999999877665555443
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=80.58 E-value=1 Score=37.50 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus 218 ~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~ 279 (313)
T 3lom_A 218 YGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMD 279 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345578899999999876 5688999999999999999877665554443
No 5
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=78.18 E-value=1.2 Score=36.85 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.
T Consensus 217 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 217 YAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEAL 277 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345578889999999865 567899999999999999887765554443
No 6
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=77.87 E-value=2.9 Score=34.73 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHH---------HcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDR---------EHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr---------~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+.-.+..++-+.+|+.|+.+|. +.|+.|+|+.+|.+++.....-+.--+.
T Consensus 218 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~ 276 (311)
T 3llw_A 218 FGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVL 276 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999998875 6899999999999999887766555444
No 7
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=76.57 E-value=1.3 Score=37.12 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+--.+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.
T Consensus 239 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~ 299 (324)
T 3uca_A 239 FGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECI 299 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345578899999999854 678899999999999999987766555444
No 8
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=76.23 E-value=3 Score=34.68 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++.....-+.--+.-.
T Consensus 213 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 213 FADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33345578899999999864 67889999999999999998776665555443
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=76.00 E-value=1.5 Score=36.82 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
---+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.+...+.-..--+.
T Consensus 251 g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~ 310 (335)
T 2h8o_A 251 GEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEAS 310 (335)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335578899999999875 566899999999999988877655544443
No 10
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=75.92 E-value=1.7 Score=36.38 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+.-.+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.-.
T Consensus 210 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~ 272 (317)
T 4f62_A 210 YAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQ 272 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578899999999865 56789999999999999998877665555433
No 11
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=75.81 E-value=1.6 Score=36.17 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+.-.+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.
T Consensus 214 ~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 214 FAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567889999999854 678899999999999999987766555444
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=74.44 E-value=2 Score=35.48 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+-..+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.
T Consensus 206 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 206 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345578899999999976 556799999999999988876655544443
No 13
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=71.60 E-value=6.7 Score=32.16 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
-..+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..--+.
T Consensus 212 g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 271 (299)
T 1rqj_A 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDAR 271 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567889999999875 557799999999999988776554444433
No 14
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=70.98 E-value=2.3 Score=34.96 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~ 123 (182)
+...+..++-+.+|+.|+.+|. +.|+|+.+|.+++...+.-..
T Consensus 221 ~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~ 263 (293)
T 2j1p_A 221 FARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLN 263 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHH
Confidence 3334557889999999999998 899999999999988765543
No 15
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=65.75 E-value=7.1 Score=32.02 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHH---------HcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDR---------EHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr---------~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+.-.+..++-+.+|+.|+.+|. ..|+.|+|+.+|.+++.....-+.--+.
T Consensus 203 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~ 261 (291)
T 3npk_A 203 LGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECE 261 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334557889999999998875 3689999999999999876655544443
No 16
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=61.62 E-value=12 Score=30.37 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=+.-.+..+-.|+++.+.|.++|..|.=.++|.+.|....-.++..++-
T Consensus 66 A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 66 AAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 33344455677899999944446679999999999999988777666666654
No 17
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=56.24 E-value=6.3 Score=33.14 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
|--.+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 220 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 220 YGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 33445678899999999875 56679999999999764
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=55.58 E-value=8.8 Score=31.51 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhcCChHHH-----HHcCCcchhhhhc--------HHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGD-----REHGIQTLSVMLG--------KEKVFWLSVYMLS 124 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egD-----r~~G~~Tlpv~lG--------~~~a~~l~~~l~~ 124 (182)
+--.+..++-+.+|+.|+.+| .+.|+.|+|+.++ .++++..+.-..-
T Consensus 195 ~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~ 254 (295)
T 3ipi_A 195 FGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVA 254 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 333455788999999999886 4678999999998 6666655544333
No 19
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=54.52 E-value=6.8 Score=32.47 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVF 116 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~ 116 (182)
+...+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++.
T Consensus 199 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~ 248 (325)
T 3aqb_B 199 FGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLK 248 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCC
Confidence 33345578889999999865 5578999999999987763
No 20
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=53.90 E-value=8.1 Score=32.28 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVF 116 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~ 116 (182)
.+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++.
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~ 251 (340)
T 2e8v_A 205 LLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTK 251 (340)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCc
Confidence 34568889999999864 6778999999999988764
No 21
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=51.68 E-value=7.9 Score=32.97 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a 115 (182)
|--.+..++-+.+|+.|+.+ |.+.|++|+|+.++.+++
T Consensus 245 ~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 245 YGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 33345578899999999865 667899999999999876
No 22
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=50.14 E-value=4.2 Score=33.45 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCChHHH----------HHcCCcchhhhhcHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEGD----------REHGIQTLSVMLGKEKVFW 117 (182)
Q Consensus 81 ~~~~~~~i~~di~D~egD----------r~~G~~Tlpv~lG~~~a~~ 117 (182)
.+..++-+.+|+.|+.+| .+.|+.|+|+.++.+++..
T Consensus 195 ~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~ 241 (299)
T 1v4e_A 195 TIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChH
Confidence 345678899999998876 5568999999999987654
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=48.91 E-value=7.3 Score=32.63 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a 115 (182)
|.-.+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++
T Consensus 208 ~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 256 (341)
T 3mzv_A 208 YGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALA 256 (341)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhC
Confidence 33345578889999999876 568899999999997653
No 24
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=48.00 E-value=12 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCChH----------HHHHcCCcchhhhhcHHHH
Q 044974 79 MTCLSVAIAFVKDLHDVE----------GDREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~e----------gDr~~G~~Tlpv~lG~~~a 115 (182)
.-.+..++-+.+|+.|+. .|.+.|+.|+|+.+..+++
T Consensus 203 g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 203 GEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 333556788899998874 7889999999999987765
No 25
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=47.63 E-value=10 Score=31.63 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
...+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 207 g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 207 GRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
Confidence 3345568889999999864 66789999999999864
No 26
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=47.16 E-value=7.2 Score=32.57 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a 115 (182)
-.+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++.
T Consensus 214 ~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 260 (334)
T 3pko_A 214 IAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHA 260 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhC
Confidence 335568889999988864 778999999999998764
No 27
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=46.03 E-value=6.3 Score=33.46 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCChHHH----------HHcCCcchhhhhcHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGD----------REHGIQTLSVMLGKEKV 115 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egD----------r~~G~~Tlpv~lG~~~a 115 (182)
+.-.+..++-+.+|+.|+.+| .+.|+.|+|+.+|.+++
T Consensus 252 ~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 333455788999999999875 56899999999998764
No 28
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=45.41 E-value=31 Score=28.46 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+.| +.|.++|..|.-.++|.+.|....-.++..++-.
T Consensus 63 A~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 115 (315)
T 3tc1_A 63 CTIVEMIQTASLLHDDVID-KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFE 115 (315)
T ss_dssp HHHHHHHHHHHHHHHHTC-----------------CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC-CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3334445567789999999 5788899999999999999888777666665543
No 29
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=44.30 E-value=12 Score=30.61 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 82 LSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 82 ~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 181 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~ 224 (301)
T 2q80_A 181 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 224 (301)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHc
Confidence 4567889999998864 67789999999998874
No 30
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=43.51 E-value=6.1 Score=33.45 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCChHHH----------HHcCCcchhhhhcHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEGD----------REHGIQTLSVMLGKEKV 115 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~egD----------r~~G~~Tlpv~lG~~~a 115 (182)
-.+..++-+.+|+.|+.+| .+.|+.|+|+.++.+++
T Consensus 247 ~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 292 (367)
T 1uby_A 247 LEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV 292 (367)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC
Confidence 3355788999999999875 66899999999998764
No 31
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=43.12 E-value=11 Score=31.17 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcCChH----------HHHHcCCcchhhhhcHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVE----------GDREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~e----------gDr~~G~~Tlpv~lG~~~a 115 (182)
-+...+..++-+.+|+.|+. .|.+.|+.|+|+.++.+++
T Consensus 199 ~~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~ 247 (330)
T 1wmw_A 199 EGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEEA 247 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHhC
Confidence 34444567888999999986 4688999999999988654
No 32
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=42.25 E-value=6.2 Score=33.22 Aligned_cols=35 Identities=14% Similarity=-0.007 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHHH
Q 044974 81 CLSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~a 115 (182)
-+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++
T Consensus 241 ~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~ 285 (362)
T 1yhl_A 241 LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA 285 (362)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC
Confidence 34567889999999986 466899999999987654
No 33
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=42.24 E-value=15 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
|---+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 212 ~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 212 YGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 33345578889999999864 66789999999999876
No 34
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=42.24 E-value=9.1 Score=31.71 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
...+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 189 g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~ 235 (315)
T 3tc1_A 189 GLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHh
Confidence 3335578889999999865 66789999999998876
No 35
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=42.24 E-value=9.7 Score=32.22 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
+--.+..++-+.+|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 228 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~ 275 (360)
T 3lmd_A 228 FGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHc
Confidence 33345578889999999875 56789999999998654
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=42.08 E-value=12 Score=31.41 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCChHH-----------HHHcCCc-chhhhhcHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEG-----------DREHGIQ-TLSVMLGKEKV 115 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~eg-----------Dr~~G~~-Tlpv~lG~~~a 115 (182)
.-+..++-+.+|+.|+.+ |.+.|+. |+|+.++.+++
T Consensus 215 ~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~ 262 (358)
T 4dhd_A 215 MAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL 262 (358)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhC
Confidence 345568889999999865 5677999 99999998863
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=41.42 E-value=72 Score=26.36 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=++-.+..+-.|+.| +.|.++|..|.-.++|.+.|....-.++..++-
T Consensus 93 A~avEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 144 (348)
T 3apz_A 93 AEITEMIHVASLLHDDVLD-DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACG 144 (348)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC-CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHH
Confidence 3344445567788999988 567889999999999999988877766666653
No 38
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=40.25 E-value=6.9 Score=33.56 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHHH
Q 044974 81 CLSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~a 115 (182)
-+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++
T Consensus 277 ~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 321 (395)
T 2ihi_A 277 LMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhC
Confidence 34567899999999876 567999999999998874
No 39
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=37.88 E-value=13 Score=30.38 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCChHH----HHHcCCcchhhhh---cHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG----DREHGIQTLSVML---GKEKV 115 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg----Dr~~G~~Tlpv~l---G~~~a 115 (182)
+-.-+..++.+.+|+.|+.+ |.+.|+.|+|+.+ |.+.+
T Consensus 196 ~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~~~~g~~~a 240 (289)
T 2azj_A 196 VGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEY 240 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHHHcCCHHHH
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=36.46 E-value=13 Score=31.60 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHH
Q 044974 79 MTCLSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 79 ~~~~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~ 114 (182)
.--+..++-+.+|+.|+.+ |.+.|+.|+|+....++
T Consensus 267 g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~ 312 (390)
T 3dyh_A 267 AMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAK 312 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHh
Confidence 3335578899999999986 67889999999988765
No 41
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=36.18 E-value=66 Score=25.78 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=+.-.+..+-.|++|.+. ++|..|.=.++|.+.|....-.++..++-
T Consensus 71 A~aiEliH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 71 AAAVHLMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHHHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence 3334445567789999999864 68899999999999988877777666653
No 42
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=35.39 E-value=19 Score=30.02 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~ 114 (182)
|-.-+..++-+.+|+.|+.+ |.+.|+.|+|+.+..+.
T Consensus 222 ~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~ 269 (348)
T 3apz_A 222 YGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEE 269 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHc
Confidence 33345578899999999876 56789999999986543
No 43
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=35.27 E-value=11 Score=32.03 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHHH
Q 044974 82 LSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 82 ~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~a 115 (182)
+..++-+.+|+-|+.+ |.+.|++|+|+..+.+++
T Consensus 278 lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~ 321 (395)
T 3mav_A 278 MGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhC
Confidence 4567889999999865 577899999999998754
No 44
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=34.53 E-value=29 Score=28.18 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHH-cC--------CcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDRE-HG--------IQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~-~G--------~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+..-+..++.+.+|+.|+.+|.+ .| +.|+|+.+|.+++...+.-..--+.
T Consensus 201 ~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~~l~~a~~~a~~~~~~A~ 259 (284)
T 2ftz_A 201 LGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXVGIQXAREMADXYYEEVL 259 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCC-----------CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578899999999988753 23 6899999999998876655544443
No 45
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=34.45 E-value=9.6 Score=32.39 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCChH------HHHHcCCcchhhhhcHHHH
Q 044974 82 LSVAIAFVKDLHDVE------GDREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 82 ~~~~~~i~~di~D~e------gDr~~G~~Tlpv~lG~~~a 115 (182)
+..++-+.+|+.|+. .|.+.|+.|+|+.++.+++
T Consensus 246 lG~aFQI~DD~LD~~~~GK~g~Dl~egK~T~pvi~al~~a 285 (368)
T 2her_A 246 LGEFYQVHNDVSDYLFNDSNADDICRFKLTWPLQKSFEIA 285 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCSSSCTTTTTCCCHHHHSSTTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHhCCcccHHHHHHHHhC
Confidence 446788999999985 6999999999999998753
No 46
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=33.00 E-value=53 Score=26.73 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
.+=+.-.+..+-.|+.| +.|.++|..|.=.++|.+.+....-.++..++
T Consensus 70 avEliH~asLIHDDi~D-~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~ 118 (295)
T 3ipi_A 70 AVEMMHSASLIHDDLLD-QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSI 118 (295)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCcC-CCCCCCCCccHHHhcCccHHHHHHHHHHHHHH
Confidence 33345567788999976 44678899999999999999877766666554
No 47
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=32.73 E-value=61 Score=26.49 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+|+++.| .++|..|.=.++|.+.+....-.++..++-.
T Consensus 77 A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 131 (302)
T 3p8l_A 77 AASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQL 131 (302)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 34444456678899999777666 5689999999999999988777776666543
No 48
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=32.17 E-value=63 Score=26.28 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
+..+=+.-.+..+-.|+|+++.| .++|..|.=.++|.+.+....-.++..++-.+
T Consensus 68 A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 123 (301)
T 1rtr_A 68 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 123 (301)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33444455677899999777664 67999999999999999987777776655433
No 49
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=31.20 E-value=89 Score=25.99 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
.+=+.-.+..+-.|+.| +.|.++|..|.-.++|.+.+....-.++..++-
T Consensus 93 aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 142 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVD-GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFE 142 (345)
T ss_dssp HHHHHHHHHHHTTTTC----------CCCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccC-CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHH
Confidence 33445567789999988 456778999999999999998877766665543
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=30.65 E-value=1.1e+02 Score=25.21 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=++-.+..+-.|+.|- .|.++|..|.-.++|.+.+....-.++..++-
T Consensus 79 A~aiEliH~asLiHDDI~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 130 (341)
T 3mzv_A 79 AATVEFIHTATLLHDDVVDE-SRQRRGRPTANLLWDNKSSVLVGDYLFARSFQ 130 (341)
T ss_dssp HHHHHHHHHHHHHHHHC-------CTTSCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccCC-CCCcCCCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 33444455677899999885 56777999999999999988877666665543
No 51
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=30.44 E-value=99 Score=25.91 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
++..+=+.-.+..+-.|+.| +.|.++|..|.-.++|.+.+....-.++..++-.
T Consensus 100 ~A~avEliH~asLIHDDImD-~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 153 (360)
T 3lmd_A 100 AAVVVEITHLATLYHDDVMD-EASMRRGVPSANARWDNSVAILAGDILLAHASGL 153 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcC-CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHH
Confidence 33444445567788999988 4677889999999999999887776666666543
No 52
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=30.38 E-value=54 Score=27.07 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
+..+=++-.+..+-.|+.| +.|.++|..|.=.++|.+.|....-.++..++-.+
T Consensus 72 A~avEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 125 (342)
T 1wy0_A 72 AVAIELIHNYSLVHDDIMD-MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAV 125 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCccc-CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHH
Confidence 3334445566778899977 44678899999999999988877766666555433
No 53
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=28.99 E-value=14 Score=31.24 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCChH------HHHHcCCcchhhhhcHHHH
Q 044974 82 LSVAIAFVKDLHDVE------GDREHGIQTLSVMLGKEKV 115 (182)
Q Consensus 82 ~~~~~~i~~di~D~e------gDr~~G~~Tlpv~lG~~~a 115 (182)
+..++-+.+|+-|+. .|.+.|+.|+|+..+.+++
T Consensus 246 lG~aFQI~DDiLD~~~gK~~g~Dl~egK~T~p~i~al~~~ 285 (368)
T 2q58_A 246 LGEFYQVHNDVSDYLFNDSNADDICRFKLTWPLQKSFEIA 285 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCTTTSCCCCHHHHSSTTTC
T ss_pred HHHHHHHHHHHhhcccCCCCCchHhcCCcHHHHHHHHHhC
Confidence 446788999999865 5889999999999997654
No 54
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=28.28 E-value=1.5e+02 Score=24.40 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhcCChHH-HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEG-DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~eg-Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=+.-.+..+-.|+|.++. |.++|..|.=.++|.+.+....-.++..++-
T Consensus 71 A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 124 (317)
T 4f62_A 71 AAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFE 124 (317)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHH
Confidence 3344445567789999975544 4678999999999999998877766655543
No 55
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=28.21 E-value=1.3e+02 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
+..+=+.-.+..+-.|+|+++.| .++|..|.=.++|.+.+....-.++..++-
T Consensus 66 A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 119 (291)
T 3npk_A 66 ALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFL 119 (291)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHH
Confidence 33444455677899999876665 568999999999999998877777666654
No 56
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=26.50 E-value=23 Score=18.15 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.5
Q ss_pred CCChhHHHHHHH
Q 044974 166 LSNNESIFSFYM 177 (182)
Q Consensus 166 ~~~~~~~~~~y~ 177 (182)
.+.+-|+.+||.
T Consensus 3 KrkQTs~TDFYh 14 (26)
T 2zvv_Y 3 KRRQTSMTDFYH 14 (26)
T ss_pred cccccchhHHHh
Confidence 356789999996
No 57
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=26.18 E-value=76 Score=26.04 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 74 FASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 74 ~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
-++..+=++-.+..+-.|+.| +.|.++|..|.=.++|.+.+....-.++..++-.+
T Consensus 63 ~~A~avEliH~asLihDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 118 (330)
T 1wmw_A 63 EAATALELFQNWVLVHDDIED-GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLL 118 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccc-CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHH
Confidence 334444445667788999977 34567999999999999998887777766665444
No 58
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=26.03 E-value=1.1e+02 Score=24.83 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAY 127 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~ 127 (182)
+..+=+.-.+..+-.|+|.++.| .++|..|.=.++|.+.+....-.++..++
T Consensus 67 A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~ 119 (297)
T 3m0g_A 67 ALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAF 119 (297)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 34444456677899999766654 67899999999999999887776665554
No 59
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=24.57 E-value=1.1e+02 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
++..+=+.-.+..+-.|+|.++.| .++|..|.=.++|.+.+....-.++..++-.+
T Consensus 71 ~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l 127 (284)
T 2ftz_A 71 VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQI 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 344444455677899999666555 47999999999999999988777776665433
No 60
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=24.53 E-value=1.1e+02 Score=24.76 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
++..+=++-.+..+-.|+|.++.| .++|..|.=.++|.+.+....-.++..++-.
T Consensus 69 ~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~ 124 (299)
T 1rqj_A 69 PAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHH
Confidence 344444456677899999666554 5799999999999999988777776665543
No 61
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=24.48 E-value=2.8e+02 Score=22.49 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=16.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHH
Q 044974 109 MLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 109 ~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
|+|||++..++..+..++-+..
T Consensus 81 r~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 81 RFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHH
Confidence 7999999988877766654443
No 62
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=23.82 E-value=79 Score=26.40 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
+..+=++-.+..+-.|+.|- .|.++|..|.=.++|.+.|....-.++..++-.+
T Consensus 71 A~aiEliH~asLiHDDI~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 124 (358)
T 4dhd_A 71 AAIVELIHNYSLIYDDIIDR-GDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAV 124 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccccC-CCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33344455677889999774 5667899999999999998887776666665443
No 63
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=23.70 E-value=1.2e+02 Score=24.93 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
..+=+.-.+..+-.|+|.++.| .++|..|.-.++|.+.+....-.++..++-.+
T Consensus 101 ~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 155 (324)
T 3uca_A 101 MAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKIL 155 (324)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3344455677899999777765 46899999999999999988777777665443
No 64
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=23.10 E-value=1.2e+02 Score=24.79 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
..+=+.-.+..+-.|+|.++.| .++|..|.=.++|.+.+....-.++..++-
T Consensus 71 ~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ 123 (304)
T 3lsn_A 71 CAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFS 123 (304)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHH
Confidence 3344455677899999765555 568999999999999998877776665553
No 65
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=22.94 E-value=1.2e+02 Score=24.79 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+|.++.| .++|..|.=.++|++.|....-.++..++-.
T Consensus 76 A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 130 (309)
T 3pde_A 76 VMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQW 130 (309)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 33444455677899999777665 5689999999999999887776666665543
No 66
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=22.61 E-value=72 Score=25.90 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+.| +.|.++|..|.=.++|.+.|....-.++..++-.
T Consensus 67 A~avEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 119 (299)
T 1v4e_A 67 LAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHT 119 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCC-CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3344445567778899966 3456789999999999999888777766665543
No 67
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=22.46 E-value=1e+02 Score=25.81 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
++..+=++-.+..+-.|+.| +.|.++|..|.=.++|...|....-.+...++-.
T Consensus 100 la~aiEliH~asLiHDDimD-~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~ 153 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMD-SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSL 153 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccc-CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHH
Confidence 33334445556677889977 5678899999999999998887666655555443
No 68
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=22.27 E-value=1e+02 Score=25.41 Aligned_cols=55 Identities=16% Similarity=0.395 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
++..+=+.-.+..+-.|+.| +.|.++|..|.=.++|.+.|....-.++..++-.+
T Consensus 81 ~A~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 135 (334)
T 3pko_A 81 GAAAIEILHVGTLIHDDVID-DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQV 135 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccCC-CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34444445667788899966 34567899999999999999887777766665433
No 69
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=21.80 E-value=63 Score=26.49 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
++..+=++-.+..+-.|+.|- .|.++|..|.=.++|.+.+....-.++..++-
T Consensus 69 ~A~avEliH~asLiHDDi~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 121 (325)
T 3aqb_B 69 TAVSLELVHMASLVHDDYIDN-SDMRRGNTSVHIAFDKDTAIRTGHFLLARALQ 121 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCEETTEECHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccC-CCCCCCCCCcccccChHHHHHHHHHHHHHHHH
Confidence 344444455677888999763 46778999999999999888777666655543
No 70
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.85 E-value=1.2e+02 Score=24.69 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
..+=+.-.+..+-.|+|.++.| .++|..|.=.++|.+.+....-.++..++-.
T Consensus 77 ~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~ 130 (302)
T 3p8r_A 77 SAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTI 130 (302)
T ss_dssp HHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3333455677889999766655 5689999999999999988777766555543
No 71
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=20.70 E-value=1.9e+02 Score=23.43 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+.|- .|.++|..|.=.++|.+.|....-.++..++-.
T Consensus 74 A~aiEliH~aSLIHDDImD~-s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~ 126 (285)
T 4fp4_A 74 AAIVELLHVVSLLQDDVMDQ-HDQRRGIKTPRAMYGDGRAIVASDWLIAESIKM 126 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCC-CCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33444455677889999774 456789999999999999888777666665543
No 72
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=20.56 E-value=2e+02 Score=23.43 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
+..+=+.-.+..+-.|+|.++.| .++|..|.-.++|.+.+....-.++..++-.
T Consensus 76 A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 130 (313)
T 3lom_A 76 AAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEV 130 (313)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 34444456677899999766664 5789999999999999988777766665543
Done!