Query 044974
Match_columns 182
No_of_seqs 184 out of 908
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 14:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 71.0 1.2 8.8E-05 34.4 2.9 37 81-117 208-255 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 70.1 3.1 0.00022 32.0 5.2 55 76-130 70-125 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 69.4 1.7 0.00012 33.6 3.5 41 80-120 213-264 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 62.0 5.4 0.00039 30.4 5.1 53 77-129 68-121 (290)
5 d1v4ea_ a.128.1.1 (A:) Octopre 44.2 9 0.00065 29.0 3.7 52 78-130 61-112 (280)
6 d2q80a1 a.128.1.1 (A:6-296) Ge 39.3 6 0.00043 30.1 1.9 32 82-113 175-217 (291)
7 d1fpsa_ a.128.1.1 (A:) Farnesy 38.6 3.6 0.00026 32.3 0.4 34 81-114 229-272 (348)
8 d1v4ea_ a.128.1.1 (A:) Octopre 34.6 4.4 0.00032 30.8 0.3 36 82-117 188-233 (280)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 29.0 34 0.0025 25.5 4.8 53 75-128 44-96 (291)
10 d1fpsa_ a.128.1.1 (A:) Farnesy 12.4 74 0.0054 24.1 3.4 47 76-123 84-130 (348)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=71.04 E-value=1.2 Score=34.37 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHH
Q 044974 81 CLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFW 117 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~ 117 (182)
-+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+++..
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 34568899999999864 66789999999999988754
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=70.08 E-value=3.1 Score=32.03 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhcCChHH-HHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEG-DREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~eg-Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
+..+=++-.+..+-.|++|.+. |.++|..|+-.++|.+.|....-.++..++-.+
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l 125 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHH
Confidence 4444456677889999999887 589999999999999999887777766666554
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=69.37 E-value=1.7 Score=33.59 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHH
Q 044974 80 TCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSV 120 (182)
Q Consensus 80 ~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~ 120 (182)
.-+..++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++.....
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 335568889999998864 77889999999999998876544
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=62.00 E-value=5.4 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHH-HHcCCcchhhhhcHHHHHHHHHHHHHHHHHH
Q 044974 77 AFMTCLSVAIAFVKDLHDVEGD-REHGIQTLSVMLGKEKVFWLSVYMLSTAYGA 129 (182)
Q Consensus 77 ~~~~~~~~~~~i~~di~D~egD-r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~ 129 (182)
..+=++-.+..+-.|++|++.| .++|..|+-.++|.+.+....-.++..++-.
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 3334456678899999998775 5899999999999999988776666555543
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=44.23 E-value=9 Score=28.96 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHH
Q 044974 78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAA 130 (182)
Q Consensus 78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~ 130 (182)
.+=++-.+..+-.|+.| +.|.++|..|.=.++|.+.+....-.++..++-.+
T Consensus 61 aiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~l 112 (280)
T d1v4ea_ 61 ALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV 112 (280)
T ss_dssp HHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhcc
Confidence 33345567788999999 67899999999999999999887766666655433
No 6
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.26 E-value=6 Score=30.15 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCChH-----------HHHHcCCcchhhhhcHH
Q 044974 82 LSVAIAFVKDLHDVE-----------GDREHGIQTLSVMLGKE 113 (182)
Q Consensus 82 ~~~~~~i~~di~D~e-----------gDr~~G~~Tlpv~lG~~ 113 (182)
+..++-+.+|+.|+. .|.+.|+.|+|+.+..+
T Consensus 175 lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~ 217 (291)
T d2q80a1 175 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW 217 (291)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHHH
Confidence 345778999998885 58889999999988743
No 7
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=38.65 E-value=3.6 Score=32.32 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHH
Q 044974 81 CLSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEK 114 (182)
Q Consensus 81 ~~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~ 114 (182)
-+..++-+.+|+.|+.+ |.+.|++|+|+.+..++
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 35578899999999875 77789999999997754
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=34.63 E-value=4.4 Score=30.85 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCChHH----------HHHcCCcchhhhhcHHHHHH
Q 044974 82 LSVAIAFVKDLHDVEG----------DREHGIQTLSVMLGKEKVFW 117 (182)
Q Consensus 82 ~~~~~~i~~di~D~eg----------Dr~~G~~Tlpv~lG~~~a~~ 117 (182)
+..++-+.+|+.|+.+ |.+.|+.|+|+.++.+++-.
T Consensus 188 lG~afQi~DD~ld~~~~~~~GK~~g~Dl~~gK~T~p~i~al~~~~~ 233 (280)
T d1v4ea_ 188 IGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 233 (280)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhhccccchhhhcccchhhHhCCCccHHHHHHHHhCHH
Confidence 4467889999998864 56678899999998776543
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.03 E-value=34 Score=25.53 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974 75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG 128 (182)
Q Consensus 75 l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~ 128 (182)
++..+=++-.+..+-.|+.|- .|.++|..|+=.++|.+.+....-.++..++-
T Consensus 44 ~a~aiEllH~asLihDDi~D~-~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 44 IIEVTEMLHNASLLIDDIEDN-SKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccC-cccccCCCccccccchhhhhhHHHHHHHHHHH
Confidence 344444566777888999864 47889999999999999998877777666543
No 10
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.38 E-value=74 Score=24.11 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHH
Q 044974 76 SAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123 (182)
Q Consensus 76 ~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~ 123 (182)
+..+=++-.+..+-.|+.| +.|.++|..|+=.++|.+.+....-.++
T Consensus 84 A~avEliH~asLihDDi~D-~~~~RRG~pt~~~~~g~~~ail~gd~ll 130 (348)
T d1fpsa_ 84 GWCIELFQAFFLVADDIMD-QSLTRRGQLCWYKKEGVGLDAINDSFLL 130 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCCEETTEECTTTSTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccc-CCccccccchhhhhccccHHHHHHHHHH
Confidence 3444456667788899977 5678899999999999998776554444
Done!