BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044975
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 257 bits (656), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 203/340 (59%), Gaps = 19/340 (5%)
Query: 6 RVQDVALKHNDTIPQQFIRSENEQPGITTVHGAVLE--------VPVIDLN--DPDQEKV 55
RV+ +A +IP+++IR + E + +++ LE VP IDL + D EK+
Sbjct: 6 RVESLAKSGIISIPKEYIRPKEE---LESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 62
Query: 56 HRSIVD----ASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPPDSKDI 111
+ ++ AS WG+ ++NHGIP +++ ++K G+ FF L EEKEKYA + I
Sbjct: 63 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 112 QGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIPSYREANEEYRKYLHGVADX 171
QGYGSKL G+ W D+ FH +P D WP+ Y EA EY K L +A
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 172 XXXXXXXXXXXEENDMKEALGG-DNLIYLLKINYYPPCPQPELALGVVAHTDMSSITLLV 230
E + +++ +GG + L+ +KINYYP CPQPELALGV AHTD+S++T ++
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 231 PNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSNGKYKSVLHRTTVTKDKTRMSWP 290
N V GLQ +G W K +P+++V+HIGD +EILSNGKYKS+LHR V K+K R+SW
Sbjct: 243 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 291 VFLEPPPDQEV-GPHPKLVNEENPAKFKTKKYSDYAYCKL 329
VF EPP D+ V P P++V+ E+PAKF + ++ + KL
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 342
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 203/340 (59%), Gaps = 19/340 (5%)
Query: 6 RVQDVALKHNDTIPQQFIRSENEQPGITTVHGAVLE--------VPVIDLN--DPDQEKV 55
RV+ +A +IP+++IR + E + +++ LE VP IDL + D EK+
Sbjct: 5 RVESLAKSGIISIPKEYIRPKEE---LESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 61
Query: 56 HRSIVD----ASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPPDSKDI 111
+ ++ AS WG+ ++NHGIP +++ ++K G+ FF L EEKEKYA + I
Sbjct: 62 RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 121
Query: 112 QGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIPSYREANEEYRKYLHGVADX 171
QGYGSKL G+ W D+ FH +P D WP+ Y EA EY K L +A
Sbjct: 122 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 181
Query: 172 XXXXXXXXXXXEENDMKEALGG-DNLIYLLKINYYPPCPQPELALGVVAHTDMSSITLLV 230
E + +++ +GG + L+ +KINYYP CPQPELALGV AHTD+S++T ++
Sbjct: 182 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 231 PNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSNGKYKSVLHRTTVTKDKTRMSWP 290
N V GLQ +G W K +P+++V+HIGD +EILSNGKYKS+LHR V K+K R+SW
Sbjct: 242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 291 VFLEPPPDQEV-GPHPKLVNEENPAKFKTKKYSDYAYCKL 329
VF EPP D+ V P P++V+ E+PAKF + ++ + KL
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 199/340 (58%), Gaps = 19/340 (5%)
Query: 6 RVQDVALKHNDTIPQQFIRSENEQPGITTVHGAVLE--------VPVIDLN--DPDQEKV 55
RV+ +A +IP+++IR + E + +++ LE VP IDL + D EK+
Sbjct: 6 RVESLAKSGIISIPKEYIRPKEE---LESINDVFLEEKKEDGPQVPTIDLKNIESDDEKI 62
Query: 56 HRSIVD----ASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPPDSKDI 111
+ ++ AS WG+ ++NHGIP ++ ++K G+ FF L EEKEKYA + I
Sbjct: 63 RENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKI 122
Query: 112 QGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIPSYREANEEYRKYLHGVADX 171
QGYGSKL G+ W D+ FH +P D WP+ Y EA EY K L +A
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 172 XXXXXXXXXXXEENDMKEALGG-DNLIYLLKINYYPPCPQPELALGVVAHTDMSSITLLV 230
E + +++ +GG + L+ KINYYP CPQPELALGV AHTD+S++T ++
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 231 PNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSNGKYKSVLHRTTVTKDKTRMSWP 290
N V GLQ +G W K +P+++V HIGD +EILSNGKYKS+LHR V K+K R+SW
Sbjct: 243 HNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 291 VFLEPPPDQEV-GPHPKLVNEENPAKFKTKKYSDYAYCKL 329
VF EPP D+ V P P+ V+ E+PAKF + ++ + KL
Sbjct: 303 VFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 144/290 (49%), Gaps = 17/290 (5%)
Query: 43 PVIDL---NDPDQEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEK 99
P+I L N ++ I DA + WG F++VNHGIP EV ++K K ++ E++
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 100 EKYAKPPDSKDIQGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIPSYREANE 159
+ + SK ++G +++ W F K P S I P+ YRE
Sbjct: 65 --FKELVASKALEGVQAEVTD-----XDWESTFFLKHLPISNISE--VPDLDEEYREVXR 115
Query: 160 EYRKYLHGVADXXXXXXXXXXXXEENDMKEAL-GGDNLIYLLKINYYPPCPQPELALGVV 218
++ K L +A+ E+ +K A G + K++ YPPCP+P+L G+
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLR 175
Query: 219 AHTDMSSITLLVPND-VQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSNGKYKSVLHR 277
AHTD I LL +D V GLQ +DG W DV +++V+++GDQ+E+++NGKYKSV HR
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHR 235
Query: 278 TTVTKDKTRMSWPVFLEPPPDQEVGPHPKLVN---EENPAKFKTKKYSDY 324
KD R S F P D + P P LV EEN + + DY
Sbjct: 236 VIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 29/292 (9%)
Query: 51 DQEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPPDSKD 110
D + + + + +++G + ++ + I K FF LP E K++YA
Sbjct: 18 DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGA- 76
Query: 111 IQGYGSKLQKELEGKKGWVDHLFHKIW------PPSAIDYRF--------WPENIPSYRE 156
+GY + +E KG + + W PP +RF WP IP+++
Sbjct: 77 -RGY---IPFGVETAKGADHYDLKEFWHXGRDLPPG---HRFRAHXADNVWPAEIPAFKH 129
Query: 157 ANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLLKINYYPPCPQPELALG 216
L G E + K + N + L++ +YPP P+ +
Sbjct: 130 DVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSV--LRLLHYPPIPKDATGVR 187
Query: 217 VVAHTDMSSITLLVPNDVQGLQA-SRDGHWYDVKYIPNALVIHIGDQMEILSNGKYKSVL 275
AH D+++ITLL+ + GL+ RDG W + P LVI+IGD +E L+N S +
Sbjct: 188 AGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTV 247
Query: 276 HRTT----VTKDKTRMSWPVFLEPPPDQEVGPHPKLVNEENPAKFKTKKYSD 323
HR + R S P FL D E+ V ENP ++ +D
Sbjct: 248 HRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITAD 299
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 199 LLKINYYPPCPQPEL--ALGVVAHTDMSSITLLVPNDVQGLQA-SRDGHWYDVKYIPNAL 255
LL+I +YPP E A+ AH D++ IT+L + GLQ ++DG W DV +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNI 210
Query: 256 VIHIGDQMEILSNGKYKSVLHRTT----VTKDKTRMSWPVFLEPPP 297
+I+IGD ++ S+G + S HR K K+R+S P+FL P P
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP 256
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 44/293 (15%)
Query: 43 PVIDLNDPDQEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKY 102
P+ + + +V + I AS+ G F VNHGI V R QK + + EEK
Sbjct: 16 PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI--NVQRLSQKTKEFHMSITPEEKWDL 73
Query: 103 AKPPDSKDIQGYGSKLQKELE--------GKKGWVDHLFHKIWPPSAIDY---------- 144
A I+ Y + Q ++ GKK F + P D+
Sbjct: 74 A-------IRAYNKEHQDQVRAGYYLSIPGKKAV--ESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 145 --RFWPENI--PSYREANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLL 200
WP+ P +++ E+Y + G++ EEN D+ + +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 201 KINYYPPC-PQPELALGVVA---------HTDMSSITLLVPNDVQGLQASRDGHWYDVKY 250
+ YP P PE A+ A H D+S IT+L ++VQ LQ + D++
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEA 244
Query: 251 IPNALVIHIGDQMEILSNGKYKSVLHRTTVTKDKTRMSWPVFLEPPPDQEVGP 303
+I+ G M L+N YK+ +HR + R S P F+ D + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 44/293 (15%)
Query: 43 PVIDLNDPDQEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKY 102
P+ + + +V + I AS+ G F VNHGI V R QK + + EEK
Sbjct: 16 PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI--NVQRLSQKTKEFHMSITPEEKWDL 73
Query: 103 AKPPDSKDIQGYGSKLQKELE--------GKKGWVDHLFHKIWPPSAIDY---------- 144
A I+ Y + Q ++ GKK F + P D+
Sbjct: 74 A-------IRAYNKEHQDQVRAGYYLSIPGKKAV--ESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 145 --RFWPENI--PSYREANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLL 200
WP+ P +++ E+Y + G++ EEN D+ + +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 201 KINYYPPC-PQPELALGVVA---------HTDMSSITLLVPNDVQGLQASRDGHWYDVKY 250
+ YP P PE A+ A H D+S IT+L ++VQ LQ + D++
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEA 244
Query: 251 IPNALVIHIGDQMEILSNGKYKSVLHRTTVTKDKTRMSWPVFLEPPPDQEVGP 303
+I+ G M L+N YK+ +HR + R S P F+ D + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFFVNLGYDSVIDP 296
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 101/275 (36%), Gaps = 51/275 (18%)
Query: 52 QEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPP----- 106
Q++ R + D G+F + + G+ ++ + + FFE E +++ P
Sbjct: 19 QDEFRRCLRDK----GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR 74
Query: 107 ---------DSKDIQGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIP-SYRE 156
+ I GS + G D+LF PS R W + Y
Sbjct: 75 RGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLF-----PSGDFERIWTQYFDRQYTA 129
Query: 157 ANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLLKINYYPPCPQPELA-- 214
+ R+ L E + EA + LL+ Y+P P+ A
Sbjct: 130 SRAVAREVLRATG------------TEPDGGVEAF--LDCEPLLRFRYFPQVPEHRSAEE 175
Query: 215 --LGVVAHTDMSSITLL----VPNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSN 268
L + H D+S +TL+ N LQA G + D+ Y P+A+++ G +++
Sbjct: 176 QPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTG 235
Query: 269 GKYKSVLHRTTVTK-----DKTRMSWPVFLEPPPD 298
G+ K+ H + +R S FL P D
Sbjct: 236 GQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 101/275 (36%), Gaps = 51/275 (18%)
Query: 52 QEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPP----- 106
Q++ R + D G+F + + G+ ++ + + FFE E +++ P
Sbjct: 19 QDEFRRCLRDK----GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR 74
Query: 107 ---------DSKDIQGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIP-SYRE 156
+ I GS + G D+LF PS R W + Y
Sbjct: 75 RGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLF-----PSGDFERIWTQYFDRQYTA 129
Query: 157 ANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLLKINYYPPCPQPELA-- 214
+ R+ L E + EA + LL+ Y+P P+ A
Sbjct: 130 SRAVAREVLRATG------------TEPDGGVEAF--LDCEPLLRFRYFPQVPEHRSAEE 175
Query: 215 --LGVVAHTDMSSITLL----VPNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSN 268
L + H D+S +TL+ N LQA G + D+ Y P+A+++ G +++
Sbjct: 176 QPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTG 235
Query: 269 GKYKSVLH-----RTTVTKDKTRMSWPVFLEPPPD 298
G+ K+ H R +R S FL P D
Sbjct: 236 GQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 199 LLKINYYPPCPQPELA----LGVVAHTDMSSITLL----VPNDVQGLQASRDGHWYDVKY 250
LL+ Y+P P+ A L + H D+S +TL+ N LQA G + D+ Y
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 251 IPNALVIHIGDQMEILSNGKYKSVLHRTTVTK-----DKTRMSWPVFLEPPPD 298
P+A+++ G +++ G+ K+ H + +R S FL P D
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 199 LLKINYYPPCPQPELA----LGVVAHTDMSSITLL----VPNDVQGLQASRDGHWYDVKY 250
LL+ Y+P P+ A L + H D+S +TL+ N LQA G + D+ Y
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 251 IPNALVIHIGDQMEILSNGKYKSVLHRTTVTK-----DKTRMSWPVFLEPPPD 298
P+A+++ G +++ G+ K+ H + +R S FL P D
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 51/275 (18%)
Query: 52 QEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPP----- 106
Q++ R + D G+F + + G+ ++ + + FFE E +++ P
Sbjct: 19 QDEFRRCLRDK----GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR 74
Query: 107 ---------DSKDIQGYGSKLQKELEGKKGWVDHLFHKIWPPSAIDYRFWPENIP-SYRE 156
+ I GS + G D+LF PS R W + Y
Sbjct: 75 RGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLF-----PSGDFERIWTQYFDRQYTA 129
Query: 157 ANEEYRKYLHGVADXXXXXXXXXXXXEENDMKEALGGDNLIYLLKINYYPPCPQPELA-- 214
+ R+ L E + EA + LL+ Y+P P+ A
Sbjct: 130 SRAVAREVLRATG------------TEPDGGVEAF--LDCEPLLRFRYFPQVPEHRSAEE 175
Query: 215 --LGVVAHTDMSSITLL----VPNDVQGLQASRDGHWYDVKYIPNALVIHIGDQMEILSN 268
L + H D+S +TL+ N LQA G + D+ Y P+A+++ G +++
Sbjct: 176 QPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTG 235
Query: 269 GKYKSVLHRTTVTK-----DKTRMSWPVFLEPPPD 298
G+ K+ H + ++ S FL P D
Sbjct: 236 GQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 52 QEKVHRSIVDASQQWGMFQVVNHGIPGEVIRELQKVGKMFFELPQEEKEKYAKPPDSKDI 111
+EKV R + Q +V H +VI++L +G + + KY+ +DI
Sbjct: 285 KEKVSRLCISIILQCCSTRVKQHK---KVIKQLLLLGNALPTVQSLSERKYSDEELRQDI 341
Query: 112 QGYGSKLQ---KELEGKKGWVDHLFHKI--WPPSAIDYRFWPENIPSYREAN 158
L+ +EL +V L K+ W P +D FW +NI +++ N
Sbjct: 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,844,817
Number of Sequences: 62578
Number of extensions: 464277
Number of successful extensions: 839
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 14
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)