BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044976
(846 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 285 IREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLP 344
+ + SP+W Y KV+I G + + + +SC+F VP +IQ GV+RC P
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPW--QEASNNYSCLFDQISVPASLIQPGVLRCYCPAHDT 66
Query: 345 GKVTLCITSGNRESCSEVKEFDYRVKPNS 373
G VTL + N+ + V F+Y+ P+S
Sbjct: 67 GLVTLQVAFNNQIISNSVV-FEYKSGPSS 94
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + + +LS G N +D +G T LH AA G +++
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG------A 94
Query: 545 DPNPLDPTGRTPAFIAASSGHK 566
DPN D G+TP +AA +GHK
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHK 116
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+L G +N D +G T LH AA G +++ DPN D G+TP +
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG------ADPNAKDSDGKTPLHL 76
Query: 560 AASSGHK 566
AA +GHK
Sbjct: 77 AAENGHK 83
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + + +LS G N +D +G T LH AA G +++
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV------VKLLLSQGA 127
Query: 545 DPNPLDPTGRTPAFIAASSGHK 566
DPN D GRTP +A G++
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNE 149
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H A G + + +LS G N +D +G T LH+AA G +++
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG------A 94
Query: 545 DPNPLDPTGRTPAFIAASSGHK 566
DPN D GRTP AA +GHK
Sbjct: 95 DPNAKDSDGRTPLHYAAENGHK 116
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+L G N D +G T LH+AA G +++ DPN D GRTP
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG------ADPNAKDSDGRTPLHY 76
Query: 560 AASSGHK 566
AA +GHK
Sbjct: 77 AAENGHK 83
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H A G + + +LS G N +D +G T LH+AA G +++
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG------A 127
Query: 545 DPNPLDPTGRTPAFIAASSGHK 566
DPN D GRTP +A G++
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNE 149
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H A G + + ++S G +N +D +G T LH+AA+ G +++
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG------A 94
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYL 572
D N D GRTP AA GHK + L
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
++ G +N D +G T LH+AA+ G +++ D N D GRTP
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG------ADVNAKDSDGRTPLHY 76
Query: 560 AASSGHKGLAGYL 572
AA GHK + L
Sbjct: 77 AAKEGHKEIVKLL 89
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 691 SAALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVR 729
+A + IQK RGW RK YL +++ + +Q +VRGYQ R
Sbjct: 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 691 SAALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVR 729
+A + IQK RGW RK Y+ +R+ + IQ +VRG+Q R
Sbjct: 769 AACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 692 AALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVRKKYKVI 735
AA+ IQK R + RK Y +R + +QA +RGY VR KY+++
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMM 861
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D NG T LH AAR G ++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV------VKLLLEAGA 59
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D GRTP +AA +GH
Sbjct: 60 DVNAKDKNGRTPLHLAARNGH 80
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D NG T LH AAR G ++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV------VKLLLEAGA 59
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D GRTP +AA +GH
Sbjct: 60 DVNAKDKNGRTPLHLAARNGH 80
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D NG T LH AAR G ++
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG------A 92
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D GRTP +AA +GH
Sbjct: 93 DVNAKDKNGRTPLHLAARNGH 113
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A +G + +L G +N RD +GWT LH AA G ++
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEI------VEVLLKYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 105 DVNAQDAYGLTPLHLAADRGH 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+HM A +G + +L G +N D NG T LH AA G ++
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEI------VEVLLKYGA 92
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D TG TP ++AA GH
Sbjct: 93 DVNAKDATGITPLYLAAYWGH 113
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N RD GWT LH AA FG ++ D N D G TP +
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEI------VEVLLKNGADVNAKDSLGVTPLHL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AARRGH 92
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D G T LH AAR G ++
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEI------VEVLLKNGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 105 DVNASDSHGFTPLHLAAKRGH 125
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 453 VLKDKLQQWLSS---KSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINF 509
+L+D +QWL+S +R + G +L H+ A G+ L ++ +N
Sbjct: 177 MLRDA-RQWLNSGHINDVRHAKSGGTAL--------HVAAAKGYTEVLKLLIQARYDVNI 227
Query: 510 RDINGWTALHWAARFGREK 528
+D +GWT LH AA +G+E+
Sbjct: 228 KDYDGWTPLHAAAHWGKEE 246
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D +G+T LH AAR G ++
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG------A 125
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVA 576
D N D G+TP +A GH+ +A L + A
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D +G+T LH AAR G ++
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGA 92
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 93 DVNAKDKDGYTPLHLAAREGH 113
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N +D +G+T LH AAR G ++ D N D G TP +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGADVNAKDKDGYTPLHL 74
Query: 560 AASSGH 565
AA GH
Sbjct: 75 AAREGH 80
>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
Length = 402
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 274 RLTVAQKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEG 333
RL ++ I+ ISP G+ VII+G D +FG V ++I
Sbjct: 223 RLDPSEAATPCIKAISPSEGWTTGGATVIIIGDNFFD----GLQVIFGTMLVWSELITPH 278
Query: 334 VIRCEAPPR-LPGKVTLCITSGNRESC 359
IR + PPR +PG V + ++ +++ C
Sbjct: 279 AIRVQTPPRHIPGVVEVTLSYKSKQFC 305
>pdb|3MQI|A Chain A, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
pdb|3MQI|B Chain B, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
pdb|3MQI|C Chain C, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
Length = 96
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 285 IREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPR-L 343
I+ ISP G+ VII+G D +FG V ++I IR + PPR +
Sbjct: 9 IKAISPSEGWTTGGATVIIIGDNFFD----GLQVIFGTMLVWSELITPHAIRVQTPPRHI 64
Query: 344 PGKVTLCITSGNRESC 359
PG V + ++ +++ C
Sbjct: 65 PGVVEVTLSYKSKQFC 80
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D +G+T LH AAR G ++
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGA 92
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 93 DVNAKDKDGYTPLHLAAREGH 113
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N +D +G+T LH AAR G ++ D N D G TP +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGADVNAKDKDGYTPLHL 74
Query: 560 AASSGH 565
AA GH
Sbjct: 75 AAREGH 80
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D +G+T LH AAR G ++
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 105 DVNAKDKDGYTPLHLAAREGH 125
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N +D +G+T LH AAR G ++ D N D G TP +
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGADVNAKDKDGYTPLHL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AAREGH 92
>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
pdb|3MUJ|B Chain B, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
Length = 138
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 285 IREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPR-L 343
I+ ISP G+ VII+G D +FG V ++I IR + PPR +
Sbjct: 8 IKAISPSEGWTTGGATVIIIGDNFFD----GLQVVFGTMLVWSELITPHAIRVQTPPRHI 63
Query: 344 PGKVTLCITSGNRESC 359
PG V + ++ +++ C
Sbjct: 64 PGVVEVTLSYKSKQFC 79
>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
Length = 159
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 284 AIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPR- 342
I+ ISP G+ VII+G D +FG V ++I IR + PPR
Sbjct: 8 CIKAISPSEGWTTGGATVIIIGDNFFD----GLQVVFGTMLVWSELITPHAIRVQTPPRH 63
Query: 343 LPGKVTLCITSGNRESC 359
+PG V + ++ +++ C
Sbjct: 64 IPGVVEVTLSYKSKQFC 80
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H A G + + ++S G +N +D +G T LH AA G +++
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG------A 94
Query: 545 DPNPLDPTGRTPAFIAASSGHK 566
D N D GRTP AA +GHK
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHK 116
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
++ G +N D +G T LH AA G +++ D N D GRTP
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG------ADVNAKDSDGRTPLHH 76
Query: 560 AASSGHK 566
AA +GHK
Sbjct: 77 AAENGHK 83
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+V G + +L +N D +GWT LH AA G ++
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEI------VEVLLKYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N +D G TP +AA GH
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGH 125
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D+ GWT LH AA +G ++ D N D G TP +
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEI------VEVLLKNGADVNAYDTLGSTPLHL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AAHFGH 92
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D G T LH AA FG ++
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEI------VEVLLKNGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA+ GH
Sbjct: 105 DVNAKDDNGITPLHLAANRGH 125
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D NG T LH AA G ++
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEI------VEVLLKYGA 137
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ ++G++ LA L ++
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.078, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D GWT LH AA FG ++ D N D G TP +
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEI------VEVLLKNGADVNADDSLGVTPLHL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AADRGH 92
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D NG+T LH AA G ++
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEI------VEVLLKHGA 137
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ +G++ LA L ++
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D G T LH AA G ++
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEV------VEVLLKNGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA+ GH
Sbjct: 105 DVNANDHNGFTPLHLAANIGH 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G ++ D+ G+T LH AA G ++
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEI------VEVLLKYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D TG TP +AA GH
Sbjct: 105 DVNAFDMTGSTPLHLAADEGH 125
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A +G + +L G +N D +G T LH AA+ G ++
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEI------VEVLLKYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA +GH
Sbjct: 105 DVNADDTIGSTPLHLAADTGH 125
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D G T LH AAR G ++ D N LD +G TP +
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEI------VEVLLKNGADVNALDFSGSTPLHL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AAKRGH 92
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 467 LRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR 526
L+ P S K E + HM A G +L +N + + T LH AAR G
Sbjct: 34 LQRGASPNVSNVKVETPL-HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92
Query: 527 EKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGH 565
M +PN G TP IAA GH
Sbjct: 93 TNM------VKLLLENNANPNLATTAGHTPLHIAAREGH 125
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H G + +L GV +N +D GW+ LH AA GR+++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHV---- 99
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSE 574
N ++ G TP AAS +A L E
Sbjct: 100 --NAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H G + +L GV +N +D GW+ LH AA GR+++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV---- 99
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSE 574
N ++ G TP AAS +A L E
Sbjct: 100 --NAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H G + +L GV +N +D GW+ LH AA GR+++
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV---- 100
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSE 574
N ++ G TP AAS +A L E
Sbjct: 101 --NAVNQNGCTPLHYAASKNRHEIAVMLLE 128
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N DI G T LH AA G ++
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEI------VEVLLKHGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N +D G TP +AA GH
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGH 125
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D+ G T LH AA G ++
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEI------VEVLLKHGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA GH
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGH 125
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D +G+T LH AA G ++ D N D TG TP +
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEI------VEVLLKNGADVNASDLTGITPLHL 86
Query: 560 AASSGH 565
AA++GH
Sbjct: 87 AAATGH 92
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D +G T LH AA++G ++
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI------VEVLLKHGA 137
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYL 572
D N D G+T I+ +G++ LA L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D +GWT LH AA G ++ D N +D G TP +
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEI------VEVLLKNGADVNAVDHAGMTPLRL 86
Query: 560 AASSGH 565
AA GH
Sbjct: 87 AALFGH 92
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+L G +N D+ G T LH AA FG ++ D N D G+T I
Sbjct: 99 LLKNGADVNANDMEGHTPLHLAAMFGHLEI------VEVLLKNGADVNAQDKFGKTAFDI 152
Query: 560 AASSGHKGLAGYLSEV 575
+ +G++ LA L ++
Sbjct: 153 SIDNGNEDLAEILQKL 168
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N DI G T LH AA G ++
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEI------VEVLLKHGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N +D G TP +AA GH
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGH 125
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G ++ D+ G+T LH AA +G ++
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEI------VEVLLKNGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N +D G TP +AA G+
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGY 125
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D +G T LH AA++G ++
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI------VEVLLKHGA 137
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ +G++ LA L ++
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H G + +L GV +N +D GW+ LH AA G +++
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV---- 99
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSE 574
N ++ G TP AAS +A L E
Sbjct: 100 --NAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N RDI G T LH AA G ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEI------VEVLLEYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ +G++ LA L ++
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D G T LH AA +G ++
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEI------VEVLLKNGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGH 565
D N D G TP +AA +GH
Sbjct: 105 DVNATDTYGFTPLHLAADAGH 125
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D G T LH AA+ G ++ D N D GRTP +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG------ADVNASDSWGRTPLHL 86
Query: 560 AASSGH 565
AA+ GH
Sbjct: 87 AATVGH 92
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 500 ILSCGVSINFRDI-NGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAF 558
+L G ++NF++ GWT LH A + RE + DP G TP
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDI------VELLLRHGADPVLRKKNGATPFL 77
Query: 559 IAASSG 564
+AA +G
Sbjct: 78 LAAIAG 83
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXX 537
SK +H A G + +LS G +N R +G T LH AA+ G ++
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 538 XXXXXXTDPNPLDPTGRTPAFIAASSGH 565
D N G TP +A +GH
Sbjct: 66 ------ADVNARSKDGNTPEHLAKKNGH 87
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N +D +G+T LH AAR G ++ D N D G+T I
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEI------VEVLLKAGADVNAQDKFGKTAFDI 74
Query: 560 AASSGHKGLAGYLSEVA 576
+ +G++ LA L + A
Sbjct: 75 SIDNGNEDLAEILQKAA 91
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 511 DINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHKGLAG 570
D+N T LHWA R G M DP+ +D G + +AA GH +
Sbjct: 74 DLNS-TPLHWATRQGHLSMVVQLMKYG------ADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 571 YL 572
YL
Sbjct: 127 YL 128
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 500 ILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFI 559
+++ G +N D NG T LH AA G+ ++ D N D G TP +
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG------ADVNASDSAGITPLHL 78
Query: 560 AASSGH 565
AA GH
Sbjct: 79 AAYDGH 84
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N D GWT LH AA G+ ++
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI------VEVLLKHGA 129
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYL 572
D N D G T I+ + G + LA L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 500 ILSCGVSINFRDI-NGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAF 558
+L G ++NF++ GWT LH A + RE + DP G TP
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDI------VELLLRHGADPVLRKKNGATPFI 97
Query: 559 IAASSG 564
+AA +G
Sbjct: 98 LAAIAG 103
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKM 529
+K ++ +HM A G + +L G +N +D+ TALHWA +++
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 788 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 828
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 785 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 781 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 821
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 785 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 785 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 780 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 820
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 719 IQAHVRGYQVRKKYKVIWAVGVLDKVILRWRRKGVGLRGFR 759
QAH+RGY +RK YK + + VI R RK + LR ++
Sbjct: 787 FQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 827
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 508 NFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHKG 567
N D G TALH AAR+ R D N D GRTP A S+ +G
Sbjct: 52 NQTDRTGETALHLAARYSRSD------AAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 568 L 568
+
Sbjct: 106 V 106
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 508 NFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHKG 567
N D G TALH AAR+ R D N D GRTP A S+ +G
Sbjct: 51 NQTDRTGETALHLAARYSRSD------AAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 568 L 568
+
Sbjct: 105 V 105
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 508 NFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHKG 567
N D G TALH AAR+ R D N D GRTP A S+ +G
Sbjct: 19 NQTDRTGETALHLAARYSRSD------AAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 568 L 568
+
Sbjct: 73 V 73
>pdb|4B0T|A Chain A, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
pdb|4B0T|B Chain B, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
Length = 493
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 426 DLWGQVIDSLLVGSGNSLDT-IDWLLQEVLKDKLQQ 460
DLWG+++ ++ G + +DT IDW++++ L D+ Q
Sbjct: 325 DLWGRMLKAIESGDFSEVDTEIDWVIKKKLIDRFIQ 360
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 507 INFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHK 566
+N D +G++ LHWA R GR + N ++ TP +AAS GH+
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI------NVMNRGDDTPLHLAASHGHR 80
Query: 567 GLAGYL 572
+ L
Sbjct: 81 DIVQKL 86
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N +D G+T LH AA G ++
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI------VEVLLKYGA 137
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ +G++ LA L ++
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 487 MVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDP 546
+ A L E + +++ IN D +G TALHWAA + D
Sbjct: 124 LAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK 183
Query: 547 NPLDPTGRTPAFIAASSG 564
+ TP F+AA G
Sbjct: 184 D------ETPLFLAAREG 195
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 443 LDTIDWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHM---VAGLGFEWALNP 499
L+ + LL L +L+ + ++++E + P E+GI + + G + ++
Sbjct: 19 LNPLVLLLDAALTGELE--VVQQAVKEMNDPS---QPNEEGITALHNAICGANYS-IVDF 72
Query: 500 ILSCGVSINFRDINGWTALHWAA 522
+++ G ++N D +GWT LH AA
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAA 95
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 507 INFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXTDPNPLDPTGRTPAFIAASSGHK 566
+N D +G++ LHWA R GR + N ++ TP +AAS GH+
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI------NVMNRGDDTPLHLAASHGHR 85
Query: 567 GLAGYL 572
+ L
Sbjct: 86 DIVQKL 91
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 462 LSSKSLRESDQPGCSLSKKEQGI--IHMVAGLGFEWALNPILSCGVSINFRDINGWTALH 519
L + + E D P SL E GI +H G + ++ GV++N D +GWT LH
Sbjct: 52 LVQRIIYEVDDP--SLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 520 WAA 522
AA
Sbjct: 109 CAA 111
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 462 LSSKSLRESDQPGCSLSKKEQGI--IHMVAGLGFEWALNPILSCGVSINFRDINGWTALH 519
L + + E D P SL E GI +H G + ++ GV++N D +GWT LH
Sbjct: 52 LVQRIIYEVDDP--SLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 520 WAA 522
AA
Sbjct: 109 CAA 111
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMXXXXXXXXXXXXXXT 544
+H+ A G + +L G +N DI G T LH AA G ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEI------VEVLLEYGA 104
Query: 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575
D N D G+T I+ +G++ LA L ++
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,078,694
Number of Sequences: 62578
Number of extensions: 816204
Number of successful extensions: 2119
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 162
length of query: 846
length of database: 14,973,337
effective HSP length: 107
effective length of query: 739
effective length of database: 8,277,491
effective search space: 6117065849
effective search space used: 6117065849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)