Query 044976
Match_columns 846
No_of_seqs 782 out of 5593
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 5.9E-28 2E-32 255.6 17.5 252 314-584 9-284 (285)
2 4g8k_A 2-5A-dependent ribonucl 99.9 1.8E-27 6.2E-32 261.0 17.4 277 314-631 29-329 (337)
3 1yyh_A HN1;, notch 1, ankyrin 99.9 1.5E-27 5.1E-32 251.3 14.8 208 322-576 35-246 (253)
4 1n11_A Ankyrin; clathrin, BAND 99.9 1.3E-27 4.4E-32 271.4 12.9 282 313-631 83-372 (437)
5 3ljn_A Hypothetical protein; a 99.9 6.2E-28 2.1E-32 267.6 9.8 222 314-585 24-276 (364)
6 1n11_A Ankyrin; clathrin, BAND 99.9 2.7E-27 9.1E-32 268.8 15.2 251 313-583 116-374 (437)
7 2f8y_A Notch homolog 1, transl 99.9 6.9E-27 2.4E-31 240.1 15.2 212 321-579 2-217 (223)
8 4g8k_A 2-5A-dependent ribonucl 99.9 7.4E-27 2.5E-31 256.2 15.7 250 312-582 61-330 (337)
9 4b93_B Ankyrin repeat domain-c 99.9 4.6E-27 1.6E-31 251.4 10.7 217 314-576 15-242 (269)
10 1k1a_A B-cell lymphoma 3-encod 99.9 4E-27 1.4E-31 244.3 9.6 218 312-577 11-240 (241)
11 4gpm_A Engineered protein OR26 99.9 4E-26 1.4E-30 227.3 16.3 153 419-580 7-163 (169)
12 3aji_A 26S proteasome non-ATPa 99.9 7.5E-27 2.6E-31 241.1 10.9 218 313-578 9-230 (231)
13 1oy3_D Transcription factor in 99.9 1.4E-26 4.9E-31 245.6 12.6 226 312-583 11-255 (282)
14 3b7b_A Euchromatic histone-lys 99.9 3.5E-26 1.2E-30 237.1 14.3 215 312-574 13-231 (237)
15 2xai_A ASB-9, ankyrin repeat a 99.9 1.1E-26 3.9E-31 246.0 10.3 217 312-580 5-224 (261)
16 3utm_A Tankyrase-1; tankyrase, 99.9 8.5E-26 2.9E-30 246.7 15.9 249 315-583 29-310 (351)
17 3eu9_A Huntingtin-interacting 99.9 1.3E-25 4.4E-30 231.8 15.7 220 313-580 12-237 (240)
18 3d9h_A CDNA FLJ77766, highly s 99.9 4.5E-26 1.5E-30 245.0 11.6 215 312-578 61-279 (285)
19 2fo1_E LIN-12 protein; beta-ba 99.9 2.8E-26 9.7E-31 256.3 10.1 221 312-578 127-371 (373)
20 3d9h_A CDNA FLJ77766, highly s 99.9 4.2E-25 1.4E-29 237.4 17.2 221 314-583 19-252 (285)
21 1yyh_A HN1;, notch 1, ankyrin 99.9 5.9E-25 2E-29 231.4 17.9 210 341-583 6-220 (253)
22 3utm_A Tankyrase-1; tankyrase, 99.9 4.4E-25 1.5E-29 241.1 16.3 243 312-577 60-333 (351)
23 2dzn_A Probable 26S proteasome 99.9 3.9E-25 1.3E-29 227.5 11.2 196 313-583 5-205 (228)
24 2dzn_A Probable 26S proteasome 99.9 3.1E-24 1.1E-28 220.8 16.6 162 416-583 2-171 (228)
25 3b7b_A Euchromatic histone-lys 99.9 4.4E-24 1.5E-28 221.2 16.6 182 390-583 21-207 (237)
26 2fo1_E LIN-12 protein; beta-ba 99.9 3.8E-25 1.3E-29 247.1 9.2 205 395-628 148-371 (373)
27 2xai_A ASB-9, ankyrin repeat a 99.9 2.9E-24 9.9E-29 227.4 15.2 180 390-583 13-196 (261)
28 1k1a_A B-cell lymphoma 3-encod 99.9 5.4E-24 1.9E-28 220.6 16.6 179 393-583 22-213 (241)
29 4gpm_A Engineered protein OR26 99.9 1.3E-23 4.3E-28 209.2 18.2 158 448-630 6-163 (169)
30 2rfa_A Transient receptor pote 99.9 4.9E-24 1.7E-28 220.4 14.6 182 392-579 15-223 (232)
31 1wdy_A 2-5A-dependent ribonucl 99.9 5.5E-24 1.9E-28 225.0 15.0 254 344-631 4-281 (285)
32 4b93_B Ankyrin repeat domain-c 99.9 6.6E-24 2.3E-28 226.8 14.3 188 387-583 18-215 (269)
33 1s70_B 130 kDa myosin-binding 99.9 3.3E-24 1.1E-28 230.2 11.8 240 314-575 44-287 (299)
34 2f8y_A Notch homolog 1, transl 99.9 2.3E-23 8E-28 213.7 16.2 210 392-629 3-217 (223)
35 3kea_A K1L; tropism, ANK repea 99.9 2.8E-24 9.5E-29 231.2 9.0 208 322-583 12-225 (285)
36 3hra_A Ankyrin repeat family p 99.9 2.6E-23 8.9E-28 209.8 15.3 175 391-576 16-201 (201)
37 1ikn_D Protein (I-kappa-B-alph 99.9 1.1E-24 3.9E-29 226.2 5.1 160 412-580 41-211 (236)
38 3aji_A 26S proteasome non-ATPa 99.9 7.7E-23 2.6E-27 211.0 18.5 186 387-583 13-202 (231)
39 3ljn_A Hypothetical protein; a 99.9 1E-23 3.6E-28 233.6 9.9 221 387-629 27-270 (364)
40 2rfa_A Transient receptor pote 99.9 1.5E-22 5.2E-27 209.1 17.8 193 416-628 3-222 (232)
41 2etb_A Transient receptor pote 99.9 4.4E-24 1.5E-28 224.6 5.9 177 395-577 21-245 (256)
42 3v30_A DNA-binding protein rfx 99.9 7.1E-23 2.4E-27 202.0 13.7 160 416-583 2-165 (172)
43 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.1E-22 3.7E-27 198.2 14.0 154 416-578 5-162 (162)
44 3kea_A K1L; tropism, ANK repea 99.9 8.1E-24 2.8E-28 227.5 5.2 210 312-580 33-248 (285)
45 2pnn_A Transient receptor pote 99.9 1.3E-23 4.3E-28 223.4 6.0 163 413-577 51-257 (273)
46 3twr_A Tankyrase-2; ankyrin re 99.9 1.1E-22 3.7E-27 199.4 12.1 156 413-577 5-164 (165)
47 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.4E-22 1.5E-26 196.4 16.2 153 415-576 13-169 (169)
48 3f6q_A Integrin-linked protein 99.9 1.6E-22 5.5E-27 201.2 13.2 160 416-583 5-168 (179)
49 1oy3_D Transcription factor in 99.9 3.1E-22 1.1E-26 212.0 15.8 196 411-631 4-253 (282)
50 2rfm_A Putative ankyrin repeat 99.9 1.8E-22 6.3E-27 202.9 12.9 157 411-576 30-190 (192)
51 4hbd_A KN motif and ankyrin re 99.9 3.8E-22 1.3E-26 213.6 15.9 186 382-576 78-273 (276)
52 3v31_A Ankyrin repeat family A 99.9 3.9E-22 1.3E-26 195.8 14.5 154 415-577 2-159 (167)
53 3hra_A Ankyrin repeat family p 99.9 2.7E-21 9.1E-26 195.0 18.5 161 415-583 4-175 (201)
54 1d9s_A Cyclin-dependent kinase 99.9 2.3E-22 7.7E-27 191.3 9.1 121 449-578 15-136 (136)
55 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.1E-21 3.8E-26 190.0 13.9 149 417-575 3-155 (156)
56 2jab_A H10-2-G3; HER2, darpin, 99.9 2.9E-21 1E-25 183.6 15.7 123 446-576 14-136 (136)
57 3eu9_A Huntingtin-interacting 99.9 7.1E-21 2.4E-25 196.1 19.6 185 387-583 16-207 (240)
58 1awc_B Protein (GA binding pro 99.9 3.3E-21 1.1E-25 186.7 15.5 146 418-572 4-152 (153)
59 1s70_B 130 kDa myosin-binding 99.9 1.6E-21 5.3E-26 209.2 14.1 185 387-583 47-262 (299)
60 2y1l_E Darpin-8.4; hydrolase-i 99.9 8.6E-21 2.9E-25 187.1 18.1 130 446-583 14-143 (169)
61 3jxi_A Vanilloid receptor-rela 99.9 7E-22 2.4E-26 208.0 10.4 163 414-578 44-250 (260)
62 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.1E-22 2.1E-26 207.1 9.6 159 415-582 4-168 (239)
63 1ikn_D Protein (I-kappa-B-alph 99.9 8.3E-22 2.9E-26 204.6 10.1 164 412-583 4-181 (236)
64 1ihb_A P18-INK4C(INK6), cyclin 99.8 6.2E-21 2.1E-25 185.8 15.0 157 446-627 5-161 (162)
65 1bi7_B P16INK4A, MTS1, multipl 99.8 1.4E-21 4.6E-26 190.4 9.8 129 447-584 13-142 (156)
66 1sw6_A Regulatory protein SWI6 99.8 2.1E-21 7E-26 213.0 11.3 160 421-583 102-313 (327)
67 2etb_A Transient receptor pote 99.8 1.4E-21 4.8E-26 205.4 9.1 196 416-630 2-248 (256)
68 3v31_A Ankyrin repeat family A 99.8 2.6E-20 8.8E-25 182.7 17.2 127 449-583 6-132 (167)
69 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.9E-20 6.7E-25 173.4 15.2 122 449-578 5-126 (126)
70 1sw6_A Regulatory protein SWI6 99.8 1E-21 3.6E-26 215.4 7.6 234 292-564 36-327 (327)
71 2rfm_A Putative ankyrin repeat 99.8 2.4E-20 8.1E-25 187.5 14.6 129 447-583 36-164 (192)
72 3v30_A DNA-binding protein rfx 99.8 4.4E-20 1.5E-24 181.9 16.3 155 449-628 5-160 (172)
73 1awc_B Protein (GA binding pro 99.8 4.9E-20 1.7E-24 178.4 16.0 128 447-583 3-130 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.8 6.9E-20 2.4E-24 179.3 16.8 130 446-583 8-138 (165)
75 3f6q_A Integrin-linked protein 99.8 6.5E-20 2.2E-24 182.3 16.7 126 450-583 9-135 (179)
76 3jxi_A Vanilloid receptor-rela 99.8 7.9E-21 2.7E-25 199.9 9.8 195 415-629 4-251 (260)
77 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.4E-20 1.1E-24 164.5 12.4 93 480-578 1-93 (93)
78 3t8k_A Uncharacterized protein 99.8 7.6E-21 2.6E-25 192.0 7.8 153 416-576 6-177 (186)
79 2pnn_A Transient receptor pote 99.8 1.5E-20 5E-25 199.7 10.4 200 410-627 7-257 (273)
80 2vge_A RELA-associated inhibit 99.8 3.2E-20 1.1E-24 193.4 9.5 128 448-583 23-153 (229)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.8 3.5E-19 1.2E-23 172.4 15.5 125 447-581 3-128 (156)
82 3aaa_C Myotrophin, protein V-1 99.8 9.3E-20 3.2E-24 169.9 10.7 113 447-567 8-120 (123)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.8 1.3E-19 4.6E-24 189.2 13.0 160 448-631 7-167 (239)
84 3ehr_A Osteoclast-stimulating 99.8 8.7E-20 3E-24 187.9 10.1 128 448-583 75-203 (222)
85 1d9s_A Cyclin-dependent kinase 99.8 2E-19 6.9E-24 170.9 11.3 133 469-627 2-135 (136)
86 3c5r_A BARD-1, BRCA1-associate 99.8 6E-20 2E-24 174.4 7.2 118 450-575 14-131 (137)
87 3lvq_E ARF-GAP with SH3 domain 99.8 2.7E-19 9.3E-24 207.7 14.0 130 448-585 134-272 (497)
88 2vge_A RELA-associated inhibit 99.8 2.1E-21 7.1E-26 202.4 -3.6 171 397-570 2-205 (229)
89 3c5r_A BARD-1, BRCA1-associate 99.8 5.7E-19 2E-23 167.6 13.3 106 469-583 1-106 (137)
90 1dcq_A PYK2-associated protein 99.8 6.9E-19 2.4E-23 188.9 15.0 124 449-578 133-263 (278)
91 4hbd_A KN motif and ankyrin re 99.8 6.1E-19 2.1E-23 188.6 13.2 157 419-583 79-247 (276)
92 3ui2_A Signal recognition part 99.8 1.5E-19 5E-24 189.9 7.7 122 447-577 46-184 (244)
93 2cxk_A Camta1, calmodulin bind 99.8 3.3E-20 1.1E-24 165.4 2.0 89 280-371 4-92 (95)
94 3deo_A Signal recognition part 99.8 1.2E-18 4.2E-23 174.2 13.6 109 447-564 45-154 (183)
95 2b0o_E UPLC1; arfgap, structur 99.8 1.9E-18 6.4E-23 187.7 13.0 125 448-578 153-284 (301)
96 3aaa_C Myotrophin, protein V-1 99.8 2.9E-18 9.9E-23 159.7 12.0 101 477-583 3-103 (123)
97 3jue_A Arfgap with coiled-coil 99.8 3.5E-18 1.2E-22 190.7 14.1 123 447-577 200-325 (368)
98 2l6b_A NR1C; ankyrin, consensu 99.7 1E-18 3.6E-23 160.6 7.2 101 477-583 5-105 (115)
99 3t8k_A Uncharacterized protein 99.7 7.7E-19 2.6E-23 177.3 6.8 124 450-583 10-151 (186)
100 2jab_A H10-2-G3; HER2, darpin, 99.7 5.6E-18 1.9E-22 160.8 12.0 101 477-583 10-110 (136)
101 1bi7_B P16INK4A, MTS1, multipl 99.7 2.2E-18 7.6E-23 167.6 6.8 138 413-560 9-151 (156)
102 1n0r_A 4ANK, 4 ankyrin repeats 99.7 3E-17 1E-21 151.8 13.4 98 480-583 1-98 (126)
103 3ehr_A Osteoclast-stimulating 99.7 1.3E-17 4.6E-22 171.4 9.5 136 477-635 69-205 (222)
104 3deo_A Signal recognition part 99.7 5.7E-17 2E-21 162.0 12.8 99 478-583 41-140 (183)
105 2zgd_A 3 repeat synthetic anky 99.7 4.1E-17 1.4E-21 149.5 10.3 90 477-572 20-109 (110)
106 3ui2_A Signal recognition part 99.7 1.5E-16 5.3E-21 166.8 10.9 99 478-583 42-141 (244)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 3.3E-16 1.1E-20 138.6 11.2 89 449-539 5-93 (93)
108 2dfs_A Myosin-5A; myosin-V, in 99.7 1.9E-16 6.4E-21 197.1 12.6 145 631-814 767-914 (1080)
109 2b0o_E UPLC1; arfgap, structur 99.7 6.9E-17 2.4E-21 175.3 7.5 136 416-566 151-299 (301)
110 2aja_A Ankyrin repeat family p 99.6 4.6E-18 1.6E-22 190.3 -6.0 147 417-579 93-251 (376)
111 2aja_A Ankyrin repeat family p 99.6 1.9E-17 6.4E-22 185.4 -2.1 138 427-577 77-223 (376)
112 2l6b_A NR1C; ankyrin, consensu 99.6 3.5E-16 1.2E-20 143.6 6.4 101 449-557 12-112 (115)
113 3lvq_E ARF-GAP with SH3 domain 99.6 2.2E-15 7.6E-20 174.7 11.2 130 418-562 134-276 (497)
114 3jue_A Arfgap with coiled-coil 99.6 3.8E-15 1.3E-19 166.2 11.2 143 416-564 199-348 (368)
115 1dcq_A PYK2-associated protein 99.5 1.4E-14 4.9E-19 155.2 11.5 127 411-540 125-264 (278)
116 2dfs_A Myosin-5A; myosin-V, in 99.5 5.9E-14 2E-18 174.7 15.7 126 687-816 765-893 (1080)
117 2zgd_A 3 repeat synthetic anky 99.5 1.8E-13 6.3E-18 125.0 10.6 85 447-533 25-109 (110)
118 2ix7_C Myosin-5A; contractIle 99.0 3.4E-10 1.2E-14 91.6 7.5 48 688-735 3-50 (58)
119 1n2d_C IQ2 and IQ3 motifs from 98.7 3E-08 1E-12 76.9 7.3 43 690-732 3-47 (48)
120 1n2d_C IQ2 and IQ3 motifs from 98.4 5.7E-07 2E-11 69.5 6.3 42 712-753 2-46 (48)
121 2ix7_C Myosin-5A; contractIle 98.2 2.1E-06 7.1E-11 69.2 7.2 41 711-751 3-44 (58)
122 3muj_A Transcription factor CO 97.5 3.1E-05 1.1E-09 71.7 2.7 106 282-404 5-112 (138)
123 1wdc_A Scallop myosin; calcium 97.2 0.00078 2.7E-08 55.1 7.3 40 691-730 7-49 (64)
124 2bl0_A Major plasmodial myosin 97.2 0.00071 2.4E-08 55.2 6.6 38 714-751 5-46 (63)
125 1wdc_A Scallop myosin; calcium 97.0 0.0018 6.2E-08 52.9 7.4 42 711-752 4-49 (64)
126 1kk8_A Myosin heavy chain, str 97.0 0.001 3.4E-08 80.8 8.0 47 687-733 776-825 (837)
127 2bl0_A Major plasmodial myosin 96.9 0.0015 5E-08 53.3 6.2 43 689-731 3-48 (63)
128 1i84_S Smooth muscle myosin he 96.7 0.0024 8.2E-08 81.2 9.4 47 687-733 789-838 (1184)
129 3mlp_A Transcription factor CO 96.7 0.00047 1.6E-08 72.7 1.7 84 282-369 231-316 (402)
130 1uad_C RSEC5, exocyst complex 96.4 0.0022 7.6E-08 57.2 4.3 85 281-369 6-94 (99)
131 1i84_S Smooth muscle myosin he 96.4 0.017 5.7E-07 73.5 13.9 47 707-753 786-836 (1184)
132 1kk8_A Myosin heavy chain, str 96.3 0.0091 3.1E-07 72.5 9.6 46 707-752 773-822 (837)
133 3tc9_A Hypothetical hydrolase; 94.9 0.012 3.9E-07 66.5 3.2 87 279-369 14-105 (430)
134 2uzx_B Hepatocyte growth facto 94.5 0.015 5.1E-07 69.9 3.1 88 282-369 541-635 (727)
135 2uzx_B Hepatocyte growth facto 93.8 0.011 3.8E-07 71.1 0.0 73 282-356 635-708 (727)
136 3kya_A Putative phosphatase; s 93.6 0.021 7.1E-07 65.5 1.8 87 279-369 14-103 (496)
137 3hrp_A Uncharacterized protein 93.4 0.024 8.1E-07 63.3 1.8 88 278-369 13-104 (409)
138 2l53_B CAM, voltage-gated sodi 92.6 0.1 3.6E-06 35.8 3.3 20 689-708 5-24 (31)
139 2kxw_B Sodium channel protein 92.1 0.095 3.2E-06 34.9 2.6 19 689-707 5-23 (27)
140 4hw6_A Hypothetical protein, I 91.8 0.07 2.4E-06 60.1 3.0 75 278-355 15-90 (433)
141 4anj_A Unconventional myosin-V 89.6 0.52 1.8E-05 58.5 8.0 42 689-731 774-815 (1052)
142 2yrp_A Nuclear factor of activ 89.5 0.37 1.3E-05 43.6 4.9 88 278-369 4-108 (114)
143 3gn4_A Myosin-VI; unconvention 88.6 4.4 0.00015 38.3 11.7 15 737-751 47-61 (148)
144 3gn4_A Myosin-VI; unconvention 86.3 3.4 0.00012 39.0 9.4 24 712-735 44-67 (148)
145 2l53_B CAM, voltage-gated sodi 81.6 1 3.6E-05 30.9 2.7 18 714-731 7-24 (31)
146 1w7j_A Myosin VA; motor protei 80.9 1.2 4E-05 53.9 4.9 29 688-716 766-794 (795)
147 2kxw_B Sodium channel protein 80.5 0.89 3E-05 30.3 2.0 17 714-730 7-23 (27)
148 4anj_A Unconventional myosin-V 76.1 2.7 9.2E-05 52.2 6.1 37 714-751 776-813 (1052)
149 1w7j_A Myosin VA; motor protei 75.6 2.2 7.6E-05 51.5 5.1 29 707-735 762-790 (795)
150 1my7_A NF-kappab P65 (RELA) su 75.4 6.3 0.00022 35.6 6.8 85 283-371 4-102 (114)
151 1zk9_A Transcription factor RE 68.1 8.2 0.00028 34.6 5.7 87 281-369 11-109 (110)
152 1oy3_C Transcription factor P6 67.7 11 0.00037 35.0 6.7 84 283-370 4-101 (136)
153 1ikn_C P50D, protein (NF-kappa 57.3 12 0.00043 33.9 5.0 87 283-371 4-107 (119)
154 4dck_A Sodium channel protein 55.1 10 0.00034 36.7 4.2 23 689-711 129-151 (168)
155 2d9z_A Protein kinase C, NU ty 50.1 8.5 0.00029 35.4 2.6 29 94-124 12-40 (129)
156 1u36_A DNA-binding, nuclear fa 46.8 20 0.0007 31.8 4.5 85 283-369 4-105 (106)
157 2ycu_A Non muscle myosin 2C, a 43.5 17 0.00058 45.1 4.8 44 692-735 766-809 (995)
158 3dvk_B Voltage-dependent R-typ 38.5 13 0.00044 23.7 1.3 16 692-707 8-23 (23)
159 1ikn_A P65, protein (NF-kappa- 38.1 39 0.0013 35.3 5.8 87 281-371 174-274 (286)
160 2ayd_A WRKY transcription fact 33.7 12 0.0004 31.3 0.7 9 62-70 14-22 (76)
161 1wj2_A Probable WRKY transcrip 32.6 11 0.00039 31.5 0.5 10 62-71 17-26 (78)
162 2o61_A Transcription factor P6 31.3 36 0.0012 38.8 4.4 86 282-371 176-275 (540)
163 2f3y_B Voltage-dependent L-typ 29.7 34 0.0012 22.2 2.2 18 692-709 4-21 (26)
164 1p7h_L Nuclear factor of activ 28.2 60 0.002 34.0 5.2 85 281-369 184-285 (286)
165 4dck_A Sodium channel protein 27.0 41 0.0014 32.4 3.4 21 714-734 131-151 (168)
166 1imh_C NF-AT5, tonebp, nuclear 25.3 60 0.002 33.9 4.5 85 281-369 180-280 (281)
167 1gji_A C-REL protein, C-REL pr 25.1 52 0.0018 34.2 4.0 85 281-369 177-274 (275)
168 1nfk_A Protein (nuclear factor 25.0 86 0.0029 33.4 5.8 86 281-370 208-312 (325)
169 2v2t_A RELB, transcription fac 23.9 57 0.002 34.2 4.1 87 281-369 189-287 (288)
170 3bxl_B CAM, voltage-dependent 22.3 62 0.0021 21.1 2.4 17 692-708 4-20 (26)
171 2coa_A Protein kinase C, D2 ty 22.0 60 0.0021 29.6 3.3 30 93-124 11-40 (125)
172 3iag_C Recombining binding pro 20.3 40 0.0014 36.8 2.0 68 299-370 343-421 (422)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.95 E-value=5.9e-28 Score=255.61 Aligned_cols=252 Identities=15% Similarity=0.067 Sum_probs=211.5
Q ss_pred ccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HHH
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DEL 389 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~~ 389 (846)
+.+||..|+.++++.|++.|+..... .+..|.|||++|+..+ ..+.+ |....+++++ .....+.++ +..
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~-----~Ll~~g~~~~-~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVE-----LLLRHGADPV-LRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHH-----HHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHH-----HHHHcCCCCc-ccCCCCCCHHHHHHH
Confidence 34899999999999999999866542 3567999999999655 33333 3344556555 222333344 566
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhh--------------hHHHHHHHH
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTI--------------DWLLQEVLK 455 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~--------------d~~L~~Al~ 455 (846)
.++.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.. +.+++.. ...|+.|+.
T Consensus 82 ~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGA---DVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HTCHHHHHHHHHTTC---CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHcCC---CCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 778999999999887 4556677889999999999999999998874 4555443 246999999
Q ss_pred hcHHHHHHHHhhC-CCCCCCCCCCCCCCcHHHHHHHcCC----hhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 044976 456 DKLQQWLSSKSLR-ESDQPGCSLSKKEQGIIHMVAGLGF----EWALNPILSCGVSINFRDINGWTALHWAARFGREKMV 530 (846)
Q Consensus 456 ~~~~~~l~~ll~~-Gad~n~~~~d~~G~T~LH~Aa~~G~----~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV 530 (846)
.+..+++..|+.. |++++. .|..|.||||+|+..|+ .+++++|++.|+++|.+|..|.||||+|+..|+.++|
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHhcCCCCCc--cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 9999999999987 999999 99999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC
Q 044976 531 AALLA-SGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSL 584 (846)
Q Consensus 531 ~~LL~-~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~ 584 (846)
++|++ .|++++ .+|..|.||||+|+..|+.+++++|+++|++++..|+
T Consensus 236 ~~Ll~~~g~~~~------~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 236 QRLLEQEHIEIN------DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHHSSSCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHhccCCCcc------ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 99999 899765 8899999999999999999999999999999888764
No 2
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=1.8e-27 Score=261.02 Aligned_cols=277 Identities=14% Similarity=0.052 Sum_probs=191.2
Q ss_pred ccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HHH
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DEL 389 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~~ 389 (846)
+..||..|++++|+.||+.|+.+... ....|.||||+||..+ ..+.++ ....+++++ ........+ ...
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g~~~iv~~-----Ll~~ga~~~-~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVEL-----LLRHGADPV-LRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHH-----HHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHHcCCHHHHHH-----HHHcCCchh-hhccCCCchhHHHHh
Confidence 34899999999999999999977652 2346999999999555 444333 345566665 222233333 223
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhh--------------hHHHHHHHH
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTI--------------DWLLQEVLK 455 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~--------------d~~L~~Al~ 455 (846)
.....++..++..+. +.+..+..+.++++.|+..+..+++..++. .+++++.. ...|+.|+.
T Consensus 102 ~~~~~~~~~~~~~~~---~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGA---DVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HTCHHHHHHHHTTTC---CTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred cccchhhHHhhhccc---hhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHH
Confidence 345556666666555 445566677788888888888888877776 34444322 125788888
Q ss_pred hcHHHHHHHHhh-CCCCCCCCCCCCCCCcHHHHHHHcCC----hhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 044976 456 DKLQQWLSSKSL-RESDQPGCSLSKKEQGIIHMVAGLGF----EWALNPILSCGVSINFRDINGWTALHWAARFGREKMV 530 (846)
Q Consensus 456 ~~~~~~l~~ll~-~Gad~n~~~~d~~G~T~LH~Aa~~G~----~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV 530 (846)
.+..++++.|+. .|+++|. .|..|.|+||.++..+. ..++++|+++|+++|.+|..|+||||+|+..|+.++|
T Consensus 178 ~g~~~~v~~LL~~~gad~n~--~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v 255 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 255 (337)
T ss_dssp HTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHhccCCCcCc--cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHH
Confidence 888888888874 5888888 88888888887776554 3467788888888888888888888888888888888
Q ss_pred HHHHHc-CCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhccccc
Q 044976 531 AALLAS-GASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISN 609 (846)
Q Consensus 531 ~~LL~~-GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 609 (846)
+.|+.. |++++ .+|..|+||||+|+..|+.++|++|+++|++++..+ +...+...
T Consensus 256 ~~Ll~~~~~~vn------~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~------------~L~~A~~~------ 311 (337)
T 4g8k_A 256 QRLLEQEHIEIN------DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD------------LVMTARRN------ 311 (337)
T ss_dssp HHHHTSTTCCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC------------HHHHHHHT------
T ss_pred HHHHHhcCCccc------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC------------HHHHHHHc------
Confidence 888875 66554 778888888888888888888888888887665433 11222111
Q ss_pred ccCCCCccccchhhhhhhHhhh
Q 044976 610 GNISSTEDQLSLKDTLAAVRNA 631 (846)
Q Consensus 610 ~~~~~~~d~~~l~~sl~A~rna 631 (846)
++.+.+.++...||..+.
T Consensus 312 ----~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 312 ----YDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp ----TCHHHHHHHHHTTCCC--
T ss_pred ----CCHHHHHHHHHCcCCCCC
Confidence 455677777777765553
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.95 E-value=1.5e-27 Score=251.35 Aligned_cols=208 Identities=18% Similarity=0.108 Sum_probs=163.9
Q ss_pred CchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHHHHHHHHHhc
Q 044976 322 DTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLLVRFVQMLLS 401 (846)
Q Consensus 322 ~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~rlv~lLl~ 401 (846)
+.+++..|+..|+.... ..+..|.|||++|+..+ +.+++++|+.
T Consensus 35 ~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A~~~g-----------------------------------~~~~v~~Ll~ 78 (253)
T 1yyh_A 35 APAVISDFIYQGASLHN-QTDRTGETALHLAARYS-----------------------------------RSDAAKRLLE 78 (253)
T ss_dssp ------------------CCCTTSCCHHHHHHHTT-----------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHccCCccc-ccCCCCCcHHHHHHHcC-----------------------------------CHHHHHHHHH
Confidence 66777777777764432 13456777777776554 5678899998
Q ss_pred CCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCC
Q 044976 402 DSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSL 477 (846)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~ 477 (846)
.+. +.+..+..+.++++.|+..+..++++.|+.....+++..+. .|+.|+..+..+++..|+..|++++. .
T Consensus 79 ~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~ 153 (253)
T 1yyh_A 79 ASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--V 153 (253)
T ss_dssp TTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC--B
T ss_pred cCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC--c
Confidence 876 45666777889999999999999999998866556665544 58999999889999999999999999 9
Q ss_pred CCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHH
Q 044976 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPA 557 (846)
Q Consensus 478 d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL 557 (846)
|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||
T Consensus 154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g~tpl 227 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD------ITDHMDRLPR 227 (253)
T ss_dssp CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTCCCHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc------ccccCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999765 8899999999
Q ss_pred HHHHHcCcHHHHHHHHHcC
Q 044976 558 FIAASSGHKGLAGYLSEVA 576 (846)
Q Consensus 558 ~lA~~~G~~~iv~~Ll~~G 576 (846)
|+|+..|+.+|+++|....
T Consensus 228 ~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 228 DIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHTTCHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHh
Confidence 9999999999999998754
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=1.3e-27 Score=271.41 Aligned_cols=282 Identities=16% Similarity=0.090 Sum_probs=210.9
Q ss_pred cccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCC---HHH
Q 044976 313 ESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKS---HDE 388 (846)
Q Consensus 313 ~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~---~~~ 388 (846)
++.+||..|+.++++.|++.|+.... .+..|.|||++|+.++ ..+.+.+ ...+.+.+ .....+.+ .+.
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~t~L~~A~~~g~~~~v~~L-----l~~~~~~~-~~~~~g~t~L~~A~ 154 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLAL-----LEKEASQA-CMTKKGFTPLHVAA 154 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCSC-CCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHHHcCCHHHHHHH-----HhCCCCCc-CCCCCCCCHHHHHH
Confidence 45589999999999999999987665 5667899999998544 3222222 22333332 11122223 355
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhh----HHHHHHHHhcHHHHHHH
Q 044976 389 LLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTID----WLLQEVLKDKLQQWLSS 464 (846)
Q Consensus 389 ~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d----~~L~~Al~~~~~~~l~~ 464 (846)
..++.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.. +.+++..+ ..|+.|+..+..+++..
T Consensus 155 ~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 155 KYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARS 230 (437)
T ss_dssp HTTCHHHHHHHHHTTC---CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 5678889999998876 4455667788899999999999999888874 34444433 35888888888899999
Q ss_pred HhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 044976 465 KSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVT 544 (846)
Q Consensus 465 ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~ 544 (846)
|+..|++++. .+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++
T Consensus 231 Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--- 305 (437)
T 1n11_A 231 LLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--- 305 (437)
T ss_dssp HHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---
T ss_pred HHHcCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC---
Confidence 9999999988 88899999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCCccccchhhh
Q 044976 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDT 624 (846)
Q Consensus 545 D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~s 624 (846)
.+|..|.||||+|+..|+.+++++|+++|++.+..+ .. +.++...+... +..+.+.++..
T Consensus 306 ---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~-----~~--g~t~L~~A~~~----------g~~~iv~~Ll~ 365 (437)
T 1n11_A 306 ---ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT-----KL--GYSPLHQAAQQ----------GHTDIVTLLLK 365 (437)
T ss_dssp ---CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCC-----TT--SCCHHHHHHHT----------TCHHHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCC-----CC--CCCHHHHHHHC----------ChHHHHHHHHH
Confidence 778889999999999999999999999987655443 22 33444433332 44566666666
Q ss_pred hhhHhhh
Q 044976 625 LAAVRNA 631 (846)
Q Consensus 625 l~A~rna 631 (846)
.|+..+.
T Consensus 366 ~ga~~~~ 372 (437)
T 1n11_A 366 NGASPNE 372 (437)
T ss_dssp TTCCSCC
T ss_pred CcCCCCC
Confidence 6665544
No 5
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.94 E-value=6.2e-28 Score=267.60 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=193.8
Q ss_pred ccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHHH
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLLV 393 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~ 393 (846)
+.+||..|+.++++.|++.|+.... .+..|.|||++||.++ +.
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~g-----------------------------------~~ 66 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFG-----------------------------------CV 66 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHC-----------------------------------CH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCcHHHHHHHcC-----------------------------------CH
Confidence 4499999999999999999987766 5678999999998765 45
Q ss_pred HHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccC---CCChhh-----------------h----hHH
Q 044976 394 RFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGS---GNSLDT-----------------I----DWL 449 (846)
Q Consensus 394 rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~---~~~~~~-----------------~----d~~ 449 (846)
+++++|+..++. .....+.++++.|+..++.++++.|+... +.+++. . ...
T Consensus 67 ~~v~~Ll~~g~~-----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 141 (364)
T 3ljn_A 67 DTAKYLASVGEV-----HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA 141 (364)
T ss_dssp HHHHHHHHHCCC-----CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH
T ss_pred HHHHHHHHCCCC-----ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH
Confidence 788999888762 22346788999999999999999998741 444544 2 346
Q ss_pred HHHHHHhc--HHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCC-----CcccCCCCCcHHHHHH
Q 044976 450 LQEVLKDK--LQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVS-----INFRDINGWTALHWAA 522 (846)
Q Consensus 450 L~~Al~~~--~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gad-----in~~D~~G~TpLh~Aa 522 (846)
|+.|+..+ ..++++.|+..|++++. .|..|.||||+|+..|+.++|++|++.|++ +|.+|..|+||||+|+
T Consensus 142 L~~A~~~g~~~~~~v~~Ll~~ga~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~ 219 (364)
T 3ljn_A 142 LHWCVGLGPEYLEMIKILVQLGASPTA--KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219 (364)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH
Confidence 99999999 99999999999999999 999999999999999999999999999998 9999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCc
Q 044976 523 RFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLT 585 (846)
Q Consensus 523 ~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~ 585 (846)
..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++....+.+
T Consensus 220 ~~g~~~~v~~Ll~~gad~~------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 276 (364)
T 3ljn_A 220 LINWEDVAMRFVEMGIDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276 (364)
T ss_dssp TTTCHHHHHHHHTTTCCTT------CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred HcCCHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc
Confidence 9999999999999999765 88999999999999999999999999999765444433
No 6
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=2.7e-27 Score=268.84 Aligned_cols=251 Identities=18% Similarity=0.139 Sum_probs=211.0
Q ss_pred cccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HH
Q 044976 313 ESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DE 388 (846)
Q Consensus 313 ~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~ 388 (846)
++.+||..|+.+++..|++.|+.... ....|.|||++|+..+ ..+.+ +....+++++ .....+.++ +.
T Consensus 116 ~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~-----~Ll~~g~~~~-~~~~~g~t~L~~A~ 187 (437)
T 1n11_A 116 PLHIAAREGHVETVLALLEKEASQAC--MTKKGFTPLHVAAKYGKVRVAE-----LLLERDAHPN-AAGKNGLTPLHVAV 187 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHH-----HHHHTTCCTT-CCCSSCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcC--CCCCCCCHHHHHHHcCCHHHHH-----HHHhCCCCCC-CCCCCCCCHHHHHH
Confidence 45599999999999999999986554 4667999999999655 33333 3344555555 222333333 55
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHH
Q 044976 389 LLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSS 464 (846)
Q Consensus 389 ~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ 464 (846)
...+.+++++|+..+. +....+..+.++++.|+..+..++++.|+. .+.+++..+. .|+.|+..+..+++..
T Consensus 188 ~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 263 (437)
T 1n11_A 188 HHNNLDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVAL 263 (437)
T ss_dssp HTTCHHHHHHHGGGTC---CSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 5678899999999887 344556678899999999999999999987 4555665543 5999999999999999
Q ss_pred HhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 044976 465 KSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVT 544 (846)
Q Consensus 465 ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~ 544 (846)
|+..|++++. .|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+++|
T Consensus 264 Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--- 338 (437)
T 1n11_A 264 LLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--- 338 (437)
T ss_dssp HHTTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT---
T ss_pred HHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC---
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 545 D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 339 ---~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 339 ---AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374 (437)
T ss_dssp ---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred ---CCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC
Confidence 889999999999999999999999999998776554
No 7
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=6.9e-27 Score=240.08 Aligned_cols=212 Identities=18% Similarity=0.124 Sum_probs=183.8
Q ss_pred CCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHHHHHHHHHh
Q 044976 321 GDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLLVRFVQMLL 400 (846)
Q Consensus 321 G~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~rlv~lLl 400 (846)
|+.++++.|++.|+.... ..+..|.|||++|+..+ +.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~-~~d~~g~t~L~~A~~~g-----------------------------------~~~~v~~Ll 45 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHN-QTDRTGETALHLAARYS-----------------------------------RSDAAKRLL 45 (223)
T ss_dssp ---CCEETTEETTCCTTC-CCTTTCCCHHHHHHHTT-----------------------------------CHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCccc-ccCCCCCchHHHHHHcC-----------------------------------CHHHHHHHH
Confidence 677888888888875543 23567889999888665 457888888
Q ss_pred cCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCC
Q 044976 401 SDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCS 476 (846)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~ 476 (846)
..+. +.+..+..+.++++.|+..+..++++.|+.....+++..+. .|+.|+..+..+++..|+..|++++.
T Consensus 46 ~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-- 120 (223)
T 2f8y_A 46 EASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-- 120 (223)
T ss_dssp HTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--
T ss_pred HcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC--
Confidence 8876 45566777889999999999999999999876555555443 59999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
.|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++ .+|..|.||
T Consensus 121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~ 194 (223)
T 2f8y_A 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD------ITDHMDRLP 194 (223)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTCCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc------cccccCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999765 889999999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTS 579 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~ 579 (846)
|++|+..|+.+++++|+++|+..
T Consensus 195 l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 195 RDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHHhcchHHHHHHHHcCCCc
Confidence 99999999999999999999753
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.94 E-value=7.4e-27 Score=256.16 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=196.0
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---H
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---D 387 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~ 387 (846)
+++.+||..|+.+|+++||+.|+.... .+..|.+|++.++..+ ..+.. +....+.+++ .....+.++ +
T Consensus 61 TpLh~A~~~g~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~d~~g~t~l~~A 132 (337)
T 4g8k_A 61 TPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFILAAIAGSVKLLK-----LFLSKGADVN-ECDFYGFTAFMEA 132 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHH-----HHHTTTCCTT-CBCTTCCBHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCchhh--hccCCCchhHHHHhcccchhhH-----Hhhhccchhh-hhccCCCCHHHHH
Confidence 356699999999999999999997776 6677899998888544 22111 2234445555 222333333 5
Q ss_pred HHHHHHHHHHHHhcCCCCC-------CCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhHH----HHHHHH-
Q 044976 388 ELLLLVRFVQMLLSDSSVN-------KEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDWL----LQEVLK- 455 (846)
Q Consensus 388 ~~~l~~rlv~lLl~~~~~~-------~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~~----L~~Al~- 455 (846)
...++.+++++|+..++.. ......+..+.++++.|+..|+.++++.|+...+++++..+.. ++.++.
T Consensus 133 ~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~ 212 (337)
T 4g8k_A 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212 (337)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH
Confidence 5566889999999987632 1112234457899999999999999999998778888877653 444432
Q ss_pred ---hcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 044976 456 ---DKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSC-GVSINFRDINGWTALHWAARFGREKMVA 531 (846)
Q Consensus 456 ---~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~-Gadin~~D~~G~TpLh~Aa~~G~~eiV~ 531 (846)
.....++..|+..|+++|. +|..|.||||+|+..|+.++++.|+.. |+++|.+|..|+||||+|+..|+.++|+
T Consensus 213 ~~~~~~~~i~~lLl~~gad~n~--~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~ 290 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGADVNV--RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 290 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCCTTC--CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred cCcccHHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 2345678889999999999 999999999999999999999999975 8999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCC
Q 044976 532 ALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLS 582 (846)
Q Consensus 532 ~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~ 582 (846)
+||++||++| +.||||+|+.+|+.++|++|+++||++++.
T Consensus 291 ~Ll~~GAd~n-----------~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 291 LLCKRGASTD-----------CGDLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTTSCSST-----------TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHHCCCCCC-----------CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 9999999765 346999999999999999999999987653
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.6e-27 Score=251.39 Aligned_cols=217 Identities=17% Similarity=0.031 Sum_probs=154.6
Q ss_pred ccEEEecCCchHHHHHhHhCccccc------cCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHH
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVIRCE------APPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHD 387 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~~c~------~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~ 387 (846)
+.+||..|+.+++++||+.|+.... ...+..|.+||+.|+..+.
T Consensus 15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~------------------------------ 64 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAP------------------------------ 64 (269)
T ss_dssp HHHHHHTTCHHHHHHHHTCC------------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCC------------------------------
Confidence 3389999999999999999874211 1234467788877764330
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHH
Q 044976 388 ELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLS 463 (846)
Q Consensus 388 ~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~ 463 (846)
...++++|+..+. +.+..+..+.+|++.|+..|..++++.|+. .+++++..+. .++.|+..+..+++.
T Consensus 65 ----~~~~v~~Ll~~Ga---dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~ 136 (269)
T 4b93_B 65 ----AQKRLAKVPASGL---GVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVK 136 (269)
T ss_dssp --------------CCC---CTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred ----HHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHH
Confidence 1134556666665 455666778899999999999999888886 4555655544 488888888899999
Q ss_pred HHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044976 464 SKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAV 543 (846)
Q Consensus 464 ~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~ 543 (846)
.|+..|+++|. +|..|.||||+||..|+.++|++|++.|+|+|.+|..|+||||+||..|+.++|++||++||+++
T Consensus 137 ~Ll~~g~~~n~--~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-- 212 (269)
T 4b93_B 137 CLLDSNAKPNK--KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-- 212 (269)
T ss_dssp HHHHTTCCSCC--CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC--
T ss_pred HHHHCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHHcC
Q 044976 544 TDPNPLDPTGRTPAFIAASSGH-KGLAGYLSEVA 576 (846)
Q Consensus 544 ~D~~~~d~~G~TPL~lA~~~G~-~~iv~~Ll~~G 576 (846)
.+|..|+||||+|+.+|+ .+++++|...+
T Consensus 213 ----~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~ 242 (269)
T 4b93_B 213 ----VLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242 (269)
T ss_dssp ----CCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred ----CcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence 889999999999998886 34444444444
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.94 E-value=4e-27 Score=244.26 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=178.4
Q ss_pred CcccEEEecCCchHHHHHhH----hCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQ----EGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHD 387 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~----~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~ 387 (846)
+.+.+||..|+.+++..|++ .|+.... .+..|.|||++|+..+
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~------------------------------- 57 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITT------------------------------- 57 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTT-------------------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcC-------------------------------
Confidence 34559999999999999987 5765554 5667999999988665
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCC---CChhhhh----HHHHHHHHhcHHH
Q 044976 388 ELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSG---NSLDTID----WLLQEVLKDKLQQ 460 (846)
Q Consensus 388 ~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~---~~~~~~d----~~L~~Al~~~~~~ 460 (846)
+.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.... .+++..+ ..|+.|+..+..+
T Consensus 58 ----~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 130 (241)
T 1k1a_A 58 ----LPSVVRLLVTAGA---SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130 (241)
T ss_dssp ----CHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred ----CHHHHHHHHHcCC---CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH
Confidence 4578888888776 445556778899999999999999988887543 1344433 3589999999999
Q ss_pred HHHHHhhCCCCCCCCCCC-CCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 044976 461 WLSSKSLRESDQPGCSLS-KKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGAS 539 (846)
Q Consensus 461 ~l~~ll~~Gad~n~~~~d-~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~ 539 (846)
++..|+..|++++. .+ ..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++
T Consensus 131 ~~~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 208 (241)
T 1k1a_A 131 TVQLLLERGADIDA--VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208 (241)
T ss_dssp HHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCccc--ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999998 77 7899999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 044976 540 AGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVAL 577 (846)
Q Consensus 540 v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga 577 (846)
++ .+|..|.||||+|+..|+.++++.|+++++
T Consensus 209 ~~------~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 209 SS------LKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp TT------CCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CC------CcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 55 888999999999999999999999988775
No 11
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=4e-26 Score=227.30 Aligned_cols=153 Identities=22% Similarity=0.290 Sum_probs=138.0
Q ss_pred hhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCCh
Q 044976 419 RGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFE 494 (846)
Q Consensus 419 ~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~ 494 (846)
.++.|+..|..++++.|++ .|+++|.+|. .++.|+..+..+++..++..|++++. +|..|.||||+|+..|+.
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~--~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh--hccCCCCHHHHHHHcCCH
Confidence 4677888899999988887 5777887765 48888888889999999999999999 999999999999999999
Q ss_pred hhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 044976 495 WALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSE 574 (846)
Q Consensus 495 ~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~ 574 (846)
++|++|+++|+|+|.+|..|+||||+||..|+.++|++|++.|++++ .+|..|+||||+|+..|+.+++++|++
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~------~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN------TSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 889999999999999999999999999
Q ss_pred cCCCCC
Q 044976 575 VALTSH 580 (846)
Q Consensus 575 ~Ga~~~ 580 (846)
+||+.+
T Consensus 158 ~GA~ie 163 (169)
T 4gpm_A 158 QGGWLE 163 (169)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 998653
No 12
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.93 E-value=7.5e-27 Score=241.13 Aligned_cols=218 Identities=15% Similarity=0.052 Sum_probs=190.5
Q ss_pred cccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHH
Q 044976 313 ESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLL 392 (846)
Q Consensus 313 ~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~ 392 (846)
.+.+||..|+.++++.|+..+...- ...+..|.|||++|+..+ +
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g-----------------------------------~ 52 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAG-----------------------------------H 52 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHT-----------------------------------C
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcC-----------------------------------c
Confidence 3459999999999999999875332 125677999999998665 4
Q ss_pred HHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhC
Q 044976 393 VRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLR 468 (846)
Q Consensus 393 ~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~ 468 (846)
.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+. .+.+++..+. .|+.|+..+..+++..|+..
T Consensus 53 ~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 53 TEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhCC---CCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 578888888876 455566778899999999999999998887 4666666554 59999999999999999999
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP 548 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~ 548 (846)
|++++. .|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++ .
T Consensus 129 g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~ 200 (231)
T 3aji_A 129 GANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY------I 200 (231)
T ss_dssp TCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC------C
T ss_pred CCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC------C
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 549 LDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 549 ~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
+|..|.||||+|+..++.+++++|+++|++
T Consensus 201 ~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 201 ENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 899999999999999999999999998864
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.93 E-value=1.4e-26 Score=245.57 Aligned_cols=226 Identities=12% Similarity=-0.059 Sum_probs=172.7
Q ss_pred CcccEEEecCCchHHHHHhHhCcccc-ccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRC-EAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELL 390 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c-~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~ 390 (846)
+++.+||.+|+.++++.|++.|+... ....+..|.||||+|+..+
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g---------------------------------- 56 (282)
T 1oy3_D 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG---------------------------------- 56 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT----------------------------------
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcC----------------------------------
Confidence 34569999999999999999988632 1225678999999998655
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChh-h---------------hhHHHHHHH
Q 044976 391 LLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLD-T---------------IDWLLQEVL 454 (846)
Q Consensus 391 l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~-~---------------~d~~L~~Al 454 (846)
+.+++++|+..++ +.+..+..+.++++.|+..+..++++.|+........ . ....+..+.
T Consensus 57 -~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (282)
T 1oy3_D 57 -EASTVEKLYAAGA---GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132 (282)
T ss_dssp -CHHHHHHHHHTTC---CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------
T ss_pred -CHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence 4577888888776 4556667788889999988888888888764322100 0 000111111
Q ss_pred H-hcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCC-CCcHHHHHHHcCCHHHHHH
Q 044976 455 K-DKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDIN-GWTALHWAARFGREKMVAA 532 (846)
Q Consensus 455 ~-~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~-G~TpLh~Aa~~G~~eiV~~ 532 (846)
. .........+...+.+++. .|..|.||||+|+..|+.++|++|++.|+++|.++.. |+||||+|+..|+.++|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 210 (282)
T 1oy3_D 133 QPNPENEEEPRDEDWRLQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210 (282)
T ss_dssp -----------CCCGGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred ccccchhhhhhhhhhhhcCCC--cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence 1 1122333444556778888 9999999999999999999999999999999999854 9999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 533 LLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 533 LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 211 Ll~~gad~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 255 (282)
T 1oy3_D 211 LLKAGADPT------ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255 (282)
T ss_dssp HHHTTCCTT------CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC
T ss_pred HHHcCCCCc------ccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC
Confidence 999999765 899999999999999999999999999998765444
No 14
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.93 E-value=3.5e-26 Score=237.09 Aligned_cols=215 Identities=17% Similarity=0.058 Sum_probs=182.5
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLL 391 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l 391 (846)
+.+.+||..|+.++++.|++.|+.... .+..|.|||++|+..+
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~----------------------------------- 55 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENN----------------------------------- 55 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTT-----------------------------------
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCc--cCCCCCCHHHHHHHhC-----------------------------------
Confidence 345599999999999999999987665 4567999999998765
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhh
Q 044976 392 LVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSL 467 (846)
Q Consensus 392 ~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~ 467 (846)
+.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.....+++..+. .++.|+..+..+++..|+.
T Consensus 56 ~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 132 (237)
T 3b7b_A 56 HLEAVKYLIKAGA---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132 (237)
T ss_dssp CHHHHHHHHTTTC---CCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4577888888776 44555667888999999999999999998866566665544 5889999888999999999
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 044976 468 RESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPN 547 (846)
Q Consensus 468 ~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~ 547 (846)
.|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 133 ~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~------ 204 (237)
T 3b7b_A 133 KGSDINI--RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT------ 204 (237)
T ss_dssp TTCCTTC--CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT------
T ss_pred CCCCCCc--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC------
Confidence 9999998 89999999999999999999999999999999999999999999999999999999999999755
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 044976 548 PLDPTGRTPAFIAASSGHKGLAGYLSE 574 (846)
Q Consensus 548 ~~d~~G~TPL~lA~~~G~~~iv~~Ll~ 574 (846)
.+|..|.||||+|+.+|+...+..|++
T Consensus 205 ~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 205 LKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp CCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999866655543
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.93 E-value=1.1e-26 Score=245.99 Aligned_cols=217 Identities=14% Similarity=0.064 Sum_probs=183.5
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLL 391 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l 391 (846)
+++.+||..|+.++++.|++.|+.... .+..|.||||+|+.++
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g----------------------------------- 47 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGG----------------------------------- 47 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHT-----------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcC-----------------------------------
Confidence 445699999999999999999987665 5667999999998665
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhh---hHHHHHHHHhcHHHHHHHHhhC
Q 044976 392 LVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTI---DWLLQEVLKDKLQQWLSSKSLR 468 (846)
Q Consensus 392 ~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~---d~~L~~Al~~~~~~~l~~ll~~ 468 (846)
+.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.. +++++.. ...++.|+..+..+++..|+..
T Consensus 48 ~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (261)
T 2xai_A 48 HLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESDLASPIHEAARRGHVECVNSLIAY 123 (261)
T ss_dssp CHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 4577888888876 4566677788999999999999999888874 4444332 2368999999999999999999
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP 548 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~ 548 (846)
|++++. .|..|.||||+|+..|+.+++++|++.|+++|. |..|+||||+|+..|+.++|++|+++|++++ .
T Consensus 124 g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~------~ 194 (261)
T 2xai_A 124 GGNIDH--KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQ------A 194 (261)
T ss_dssp TCCTTC--CBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT------C
T ss_pred CCCCCc--CCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC------C
Confidence 999999 999999999999999999999999999999995 8899999999999999999999999999755 8
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 044976 549 LDPTGRTPAFIAASSGHKGLAGYLSEVALTSH 580 (846)
Q Consensus 549 ~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~ 580 (846)
+|..|+||||+|+.++ +++++|++++..+.
T Consensus 195 ~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~ 224 (261)
T 2xai_A 195 KNAEGKRPVELVPPES--PLAQLFLEREGPPS 224 (261)
T ss_dssp CCTTSCCGGGGSCTTC--THHHHHHHC-CCCC
T ss_pred cCCCCCChhhhccccc--cHHHHHHhccCCcc
Confidence 8999999999999665 48999999876443
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.93 E-value=8.5e-26 Score=246.71 Aligned_cols=249 Identities=14% Similarity=0.077 Sum_probs=192.9
Q ss_pred cEEEecCCchHHHHHhHh-CccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HHH
Q 044976 315 AWSCMFGDTEVPLQIIQE-GVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DEL 389 (846)
Q Consensus 315 ~~ac~fG~~eV~~~Ll~~-Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~~ 389 (846)
.+||..|+.+++..|+.. |+.... .+..|.||||+|+..+ ..+.+ +....+++++ .....+.++ +..
T Consensus 29 ~~A~~~g~~~~v~~ll~~~~~~~~~--~d~~g~t~L~~A~~~g~~~~v~-----~Ll~~g~~~~-~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 29 LEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAGYNRVRIVQ-----LLLQHGADVH-AKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTTCCC--SSTTCCCHHHHHHHTTCHHHHH-----HHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHH-----HHHHcCCCCC-ccCCCCCcHHHHHHH
Confidence 389999999998888876 555444 5667999999999655 33333 3344566665 222333343 556
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH---------------------
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW--------------------- 448 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~--------------------- 448 (846)
.++.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.. +++++..+.
T Consensus 101 ~g~~~iv~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 101 YGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp TTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 678899999999877 4556677788999999999999999998874 555543321
Q ss_pred ----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHc---CChhhHHHHHhCCCCCcccCCCCCcHHHHH
Q 044976 449 ----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGL---GFEWALNPILSCGVSINFRDINGWTALHWA 521 (846)
Q Consensus 449 ----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~---G~~~iv~~LL~~Gadin~~D~~G~TpLh~A 521 (846)
.+..++.....+.+..++..+..... .+..|.||||+|+.. +..+++++|++.|+++|.+|..|+||||+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 254 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFK--QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCC--CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhccccc--CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHH
Confidence 13333444445555666666554444 788999999999999 457899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 522 ARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 522 a~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 255 ~~~g~~~~v~~Ll~~ga~~n------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 310 (351)
T 3utm_A 255 AERAHNDVMEVLHKHGAKMN------ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHcCCHHHHHHHHHCCCCCC------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999765 889999999999999999999999999998766554
No 17
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=231.77 Aligned_cols=220 Identities=16% Similarity=0.125 Sum_probs=189.6
Q ss_pred cccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHH
Q 044976 313 ESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLL 392 (846)
Q Consensus 313 ~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~ 392 (846)
.+.+||..|+.++++.|++.|+.... .+..|.|||++|+..+ +
T Consensus 12 ~l~~A~~~g~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~-----------------------------------~ 54 (240)
T 3eu9_A 12 DIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINN-----------------------------------R 54 (240)
T ss_dssp CHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTT-----------------------------------C
T ss_pred HHHHHHHcCChHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHhC-----------------------------------C
Confidence 34599999999999999999987655 5677999999998765 4
Q ss_pred HHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhC
Q 044976 393 VRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLR 468 (846)
Q Consensus 393 ~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~ 468 (846)
.+++++|+..+.. .....+..+.++++.|+..+..++++.|+. .+.+++..+. .++.|+..+..++++.|+..
T Consensus 55 ~~~v~~Ll~~~~~--~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 55 IDLVKYYISKGAI--VDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHHHHHTTCC--TTCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCc--chhhcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 5788889888772 334444557899999999999999999887 4566665544 59999999999999999999
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCC-hhhHHHHHhCCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGF-EWALNPILSCGVSINFRDI-NGWTALHWAARFGREKMVAALLASGASAGAVTDP 546 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~-~~iv~~LL~~Gadin~~D~-~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~ 546 (846)
|++++. .|..|.||||+|+..++ .+++++|+..|++++..+. .|.||||+|+..|+.++|++|+++|++++
T Consensus 132 ~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----- 204 (240)
T 3eu9_A 132 GQDVDM--MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD----- 204 (240)
T ss_dssp TCCTTC--CCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-----
T ss_pred CCCccc--cCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----
Confidence 999999 99999999999997776 8999999999999999997 99999999999999999999999999765
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 044976 547 NPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSH 580 (846)
Q Consensus 547 ~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~ 580 (846)
..|..|.|||++|+..|+.+++++|+++|+...
T Consensus 205 -~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 205 -AQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp -CBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred -CcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 889999999999999999999999999997554
No 18
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.5e-26 Score=245.04 Aligned_cols=215 Identities=14% Similarity=0.065 Sum_probs=183.1
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLL 391 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l 391 (846)
+.+.+||..|+.++++.|++.|+.... .+..|.|||++||..+
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g----------------------------------- 103 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGG----------------------------------- 103 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCE--ECTTCCCHHHHHHHTT-----------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHCC-----------------------------------
Confidence 445699999999999999999987665 5667999999999765
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhh---hHHHHHHHHhcHHHHHHHHhhC
Q 044976 392 LVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTI---DWLLQEVLKDKLQQWLSSKSLR 468 (846)
Q Consensus 392 ~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~---d~~L~~Al~~~~~~~l~~ll~~ 468 (846)
+.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+.. +.+++.. ...|+.|+..+..+++..|+..
T Consensus 104 ~~~~v~~Ll~~ga---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 104 HLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESDLASPIHEAARRGHVECVNSLIAY 179 (285)
T ss_dssp CHHHHHHHHHTTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred cHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 4578888888876 4566677788999999999999999888874 4444332 3469999999999999999999
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP 548 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~ 548 (846)
|++++. .|..|.||||+|+..|+.+++++|++.|+++|. |..|+||||+|+..|+.++|++|+++|++++ .
T Consensus 180 g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~------~ 250 (285)
T 3d9h_A 180 GGNIDH--KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ------A 250 (285)
T ss_dssp TCCTTC--CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT------C
T ss_pred CCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------C
Confidence 999999 999999999999999999999999999999995 8899999999999999999999999999755 8
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHc-CCC
Q 044976 549 LDPTGRTPAFIAASSGHKGLAGYLSEV-ALT 578 (846)
Q Consensus 549 ~d~~G~TPL~lA~~~G~~~iv~~Ll~~-Ga~ 578 (846)
+|..|.||||+|+ ++.+++++|+++ |++
T Consensus 251 ~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 251 KNAEGKRPVELVP--PESPLAQLFLEREGAS 279 (285)
T ss_dssp CCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred cCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence 8999999999999 456899999998 553
No 19
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.93 E-value=2.8e-26 Score=256.30 Aligned_cols=221 Identities=16% Similarity=0.117 Sum_probs=184.7
Q ss_pred CcccEEEecCCchHHHHHh--------HhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccC
Q 044976 312 SESAWSCMFGDTEVPLQII--------QEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEAT 383 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll--------~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~ 383 (846)
+.+.|||..|+.+++..|+ +.|+.+.. .+..|.||||+|+.++
T Consensus 127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~--~d~~g~TpL~~A~~~g--------------------------- 177 (373)
T 2fo1_E 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA--MDCDENTPLMLAVLAR--------------------------- 177 (373)
T ss_dssp CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC--CCTTSCCHHHHHHHHT---------------------------
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC--CCCCCCCHHHHHHHcC---------------------------
Confidence 3455888888888777766 67776665 4667888888887654
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCC--CChhhhhH----HHHHHHHhc
Q 044976 384 KSHDELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSG--NSLDTIDW----LLQEVLKDK 457 (846)
Q Consensus 384 ~~~~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~--~~~~~~d~----~L~~Al~~~ 457 (846)
+.+++++|+..++ +.+..+..+.++++.|+..+..++++.|+.... .+++..+. .|+.|+..+
T Consensus 178 --------~~~iv~~Ll~~ga---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 178 --------RRRLVAYLMKAGA---DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246 (373)
T ss_dssp --------CHHHHHHHHHTTC---CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred --------hHHHHHHHHHCCC---CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence 4578999999887 455667788899999999999999999987431 33444333 588888877
Q ss_pred ---HHHHHHHHhhCCCCCCCC------CCCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCcccCCCCCcHHHHHHHcCCH
Q 044976 458 ---LQQWLSSKSLRESDQPGC------SLSKKEQGIIHMVAGLGFEWALNPILSCG-VSINFRDINGWTALHWAARFGRE 527 (846)
Q Consensus 458 ---~~~~l~~ll~~Gad~n~~------~~d~~G~T~LH~Aa~~G~~~iv~~LL~~G-adin~~D~~G~TpLh~Aa~~G~~ 527 (846)
..+++..|+..|++++.. ..|..|.||||+|+..|+.++|++|++.| +++|.+|..|+||||+|+..|+.
T Consensus 247 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~ 326 (373)
T 2fo1_E 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326 (373)
T ss_dssp STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH
Confidence 899999999999998751 15679999999999999999999999876 99999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 528 KMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
++|++|+++|++++ .+|..|.||||+|+.+|+.+++++|+++|++
T Consensus 327 ~iv~~Ll~~gad~~------~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 327 EVVMYLIQQGASVE------AVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTTCCSS------CCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHHHcCCCcc------CCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999999999765 8899999999999999999999999999874
No 20
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=237.45 Aligned_cols=221 Identities=14% Similarity=0.025 Sum_probs=169.1
Q ss_pred ccEEEecCCchHHHHHhHhCcc---------ccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCC
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVI---------RCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATK 384 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~---------~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~ 384 (846)
+++||+.|+.+.+..++..+.. ......+..|.|||++|+..+
T Consensus 19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g---------------------------- 70 (285)
T 3d9h_A 19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHG---------------------------- 70 (285)
T ss_dssp -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTT----------------------------
T ss_pred HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcC----------------------------
Confidence 3499999998777766554321 001112445666666666554
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHH
Q 044976 385 SHDELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQ 460 (846)
Q Consensus 385 ~~~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~ 460 (846)
+.+++++|+..+. +.+..+..+.++++.|+..|..++++.|+. .+++++..+. .|+.|+..+..+
T Consensus 71 -------~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~ 139 (285)
T 3d9h_A 71 -------HQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWD 139 (285)
T ss_dssp -------CHHHHHHHHHTTC---CSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred -------CHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence 5678899998876 456677788999999999999999999987 4677776654 599999999999
Q ss_pred HHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044976 461 WLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASA 540 (846)
Q Consensus 461 ~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v 540 (846)
++..|+..|++++. . ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|++.|+++
T Consensus 140 ~v~~Ll~~g~~~~~--~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 140 CVNLLLQHGASVQP--E-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216 (285)
T ss_dssp HHHHHHHTTCCSSC--S-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHCCCCCCC--C-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence 99999999999986 4 45999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 541 GAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 541 ~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+ .|..|.||||+|+..|+.+++++|+++|++.+..|
T Consensus 217 ~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d 252 (285)
T 3d9h_A 217 N-------QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252 (285)
T ss_dssp T-------CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred C-------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 5 37899999999999999999999999998665544
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=5.9e-25 Score=231.45 Aligned_cols=210 Identities=19% Similarity=0.135 Sum_probs=150.6
Q ss_pred CCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcchh
Q 044976 341 PRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLLVRFVQMLLSDSSVNKEEGVELGYHELRG 420 (846)
Q Consensus 341 ~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l 420 (846)
.+..|.||||+|+..|.. .++. ..+....+.++++.|+..+.. .....+..+.+++
T Consensus 6 ~d~~g~tpL~~A~~~g~~-~~~~---------------------~~~~~~~~~~~v~~Ll~~g~~--~~~~~d~~g~t~L 61 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGG-LETG---------------------NSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETAL 61 (253)
T ss_dssp ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred CCCCCCcHHHHHHhcccc-cccc---------------------chhhcCCChHHHHHHHHccCC--cccccCCCCCcHH
Confidence 356799999999965411 0110 002223467889999988772 3444567889999
Q ss_pred chhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCC-CCCCCCCCCCCCcHHHHHHHcCChh
Q 044976 421 MKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRES-DQPGCSLSKKEQGIIHMVAGLGFEW 495 (846)
Q Consensus 421 ~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Ga-d~n~~~~d~~G~T~LH~Aa~~G~~~ 495 (846)
+.|+..|..++++.|+. .+++++..+. .|+.|+..+..+++..|+..|+ +++. .|..|.||||+|+..|+.+
T Consensus 62 ~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~ 138 (253)
T 1yyh_A 62 HLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEG 138 (253)
T ss_dssp HHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC--CCTTCCCHHHHHHHHTCSS
T ss_pred HHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc--cCCCCCcHHHHHHHcChHH
Confidence 99999999999999987 5677776654 5999999999999999999987 8888 9999999999999999999
Q ss_pred hHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 044976 496 ALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575 (846)
Q Consensus 496 iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~ 575 (846)
++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++
T Consensus 139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 212 (253)
T 1yyh_A 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD------MQNNREETPLFLAAREGSYETAKVLLDH 212 (253)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999765 8899999999999999999999999999
Q ss_pred CCCCCCCC
Q 044976 576 ALTSHLSS 583 (846)
Q Consensus 576 Ga~~~~~d 583 (846)
|++.+..+
T Consensus 213 ga~~~~~d 220 (253)
T 1yyh_A 213 FANRDITD 220 (253)
T ss_dssp TCCTTCCC
T ss_pred CCCccccc
Confidence 98665443
No 22
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.92 E-value=4.4e-25 Score=241.06 Aligned_cols=243 Identities=16% Similarity=0.072 Sum_probs=188.0
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---H
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---D 387 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~ 387 (846)
+++.+||.+|+.++++.|++.|+.... .+..|.||||+|+..+ ..+.+ +....+++++ .....+.++ +
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~iv~-----~Ll~~g~~~~-~~~~~g~t~L~~A 131 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTE-----LLLKHGACVN-AMDLWQFTPLHEA 131 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHH-----HHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHCCCHHHHH-----HHHHCCCCCC-CCCCCCCCHHHHH
Confidence 345699999999999999999987765 5678999999999655 33333 3345566665 222333343 5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhh---------------------hcCcHHHHHHHHccCCCCh---
Q 044976 388 ELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKAD---------------------DDLWGQVIDSLLVGSGNSL--- 443 (846)
Q Consensus 388 ~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa---------------------~~g~~~~i~~ll~~~~~~~--- 443 (846)
...++.+++++|+..+. +.+..+..+.++++.+. ..+....+..++.......
T Consensus 132 ~~~~~~~~v~~Ll~~g~---~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 132 ASKNRVEVCSLLLSHGA---DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HHcCCHHHHHHHHHcCC---CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence 56678899999999887 34444555555554443 3444444444444332221
Q ss_pred hhhhHHHHHHHHh---cHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHH
Q 044976 444 DTIDWLLQEVLKD---KLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHW 520 (846)
Q Consensus 444 ~~~d~~L~~Al~~---~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~ 520 (846)
......++.|+.. +..+++..|+..|++++. +|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~ 286 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 1223468999988 778999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 044976 521 AARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVAL 577 (846)
Q Consensus 521 Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga 577 (846)
|+..|+.++|++|+++|++++ ..|..|.||+++| +.+++++|.+.+.
T Consensus 287 A~~~~~~~~v~~Ll~~gad~~------~~~~~g~tal~~a----~~~~~~~l~~~~~ 333 (351)
T 3utm_A 287 AALAGHLQTCRLLLSYGSDPS------IISLQGFTAAQMG----NEAVQQILSESTP 333 (351)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred HHHcCcHHHHHHHHHcCCCCC------CcCCCCCChhhhh----hHHHHHHHHhccc
Confidence 999999999999999999755 8999999999998 6789999998864
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.92 E-value=3.9e-25 Score=227.53 Aligned_cols=196 Identities=18% Similarity=0.110 Sum_probs=133.7
Q ss_pred cccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHH
Q 044976 313 ESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLL 392 (846)
Q Consensus 313 ~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~ 392 (846)
++.+||..|+.++++.|++.|..... ..+..|.|||++|+..+ +
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~-----------------------------------~ 48 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQ-----------------------------------A 48 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTT-CCCTTSCCHHHHHHHTT-----------------------------------C
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccc-cCCCCCCCHHHHHHHcC-----------------------------------C
Confidence 34588889999999999988864433 24567888888888665 3
Q ss_pred HHHHHHHhcCCCCCCCCCc-ccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhHHHHHHHHhcHHHHHHHHhhCC--
Q 044976 393 VRFVQMLLSDSSVNKEEGV-ELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDWLLQEVLKDKLQQWLSSKSLRE-- 469 (846)
Q Consensus 393 ~rlv~lLl~~~~~~~~~~~-~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~~L~~Al~~~~~~~l~~ll~~G-- 469 (846)
.+++++|+..++.. +... .+..+.++++.|+..+. .+++..|+..|
T Consensus 49 ~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~~~~~------------------------------~~~~~~Ll~~g~~ 97 (228)
T 2dzn_A 49 HEITSFLLSKMENV-NLDDYPDDSGWTPFHIACSVGN------------------------------LEVVKSLYDRPLK 97 (228)
T ss_dssp HHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHHHHCC------------------------------HHHHHHHHSSSSC
T ss_pred HHHHHHHHhccccc-cccccCCCCCCCHHHHHHHcCC------------------------------HHHHHHHHhCCCC
Confidence 46778888776421 1111 33444455555544444 44555555555
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCC
Q 044976 470 SDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASG-ASAGAVTDPNP 548 (846)
Q Consensus 470 ad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~G-A~v~~~~D~~~ 548 (846)
++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.| ++++ .
T Consensus 98 ~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~ 169 (228)
T 2dzn_A 98 PDLNK--ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN------W 169 (228)
T ss_dssp CCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC------C
T ss_pred ccccc--CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc------C
Confidence 56666 6777777777777777777777777777777777777777777777777777777777777 5443 6
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCCCC
Q 044976 549 LDPTGRTPAFIAASSGHKGLAGYLS-EVALTSHLSS 583 (846)
Q Consensus 549 ~d~~G~TPL~lA~~~G~~~iv~~Ll-~~Ga~~~~~d 583 (846)
+|..|.||||+|+..|+.+++++|+ ++|++.+..|
T Consensus 170 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 6777777777777777777777777 6777776655
No 24
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=3.1e-24 Score=220.76 Aligned_cols=162 Identities=16% Similarity=0.017 Sum_probs=138.0
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhhh----hHHHHHHHHhcHHHHHHHHhhCCCCCCCCC-CCCCCCcHHHHHHH
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDTI----DWLLQEVLKDKLQQWLSSKSLRESDQPGCS-LSKKEQGIIHMVAG 490 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~----d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~-~d~~G~T~LH~Aa~ 490 (846)
+.++++.|+..|..++++.++.......+.. ...|+.|+..+..+++..|+..|++++... .|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 3467888888888888888776544332222 235888888888999999999996655433 67899999999999
Q ss_pred cCChhhHHHHHhCC--CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 044976 491 LGFEWALNPILSCG--VSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGL 568 (846)
Q Consensus 491 ~G~~~iv~~LL~~G--adin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~i 568 (846)
.|+.+++++|++.| ++++..|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR------IKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC------CCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc------ccCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999 9999999999999999999999999999999999765 889999999999999999999
Q ss_pred HHHHHHcC-CCCCCCC
Q 044976 569 AGYLSEVA-LTSHLSS 583 (846)
Q Consensus 569 v~~Ll~~G-a~~~~~d 583 (846)
+++|+++| ++.+..+
T Consensus 156 v~~Ll~~g~~~~~~~d 171 (228)
T 2dzn_A 156 IELLCGLGKSAVNWQD 171 (228)
T ss_dssp HHHHHTTTCCCSCCCC
T ss_pred HHHHHhcCcccccCcC
Confidence 99999999 7776654
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=4.4e-24 Score=221.22 Aligned_cols=182 Identities=19% Similarity=0.126 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHH
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSK 465 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~l 465 (846)
.++.+++++|+..+. +.+..+..+.++++.|+..+..++++.|+. .+.+++..+. .|+.|+..+..+++..|
T Consensus 21 ~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 96 (237)
T 3b7b_A 21 AGHVDICHMLVQAGA---NIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96 (237)
T ss_dssp HTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCcHHHHHHHHHcCC---CcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 346688999998876 445566778899999999999999999987 4555555543 59999999999999999
Q ss_pred hhCC-CCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 044976 466 SLRE-SDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVT 544 (846)
Q Consensus 466 l~~G-ad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~ 544 (846)
+..| .+++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 97 l~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--- 171 (237)
T 3b7b_A 97 LSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--- 171 (237)
T ss_dssp HTTTCCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT---
T ss_pred HhCCCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC---
Confidence 9998 88888 99999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 545 DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 545 D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
..|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 172 ---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d 207 (237)
T 3b7b_A 172 ---AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207 (237)
T ss_dssp ---CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred ---CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence 889999999999999999999999999998665443
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.91 E-value=3.8e-25 Score=247.10 Aligned_cols=205 Identities=15% Similarity=0.159 Sum_probs=169.1
Q ss_pred HHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCC-
Q 044976 395 FVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRE- 469 (846)
Q Consensus 395 lv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~G- 469 (846)
.++.|+..+. +.+..+..+.++++.|+..|..++++.|+. .+++++..+. .|+.|+..+..+++..|+..|
T Consensus 148 ~~~~ll~~ga---~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 223 (373)
T 2fo1_E 148 EAKECIAAGA---DVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223 (373)
T ss_dssp HHHHHHHTCC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH
T ss_pred HHHHHHhcCC---CCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCc
Confidence 3455567776 556677889999999999999999999987 5677766554 599999999999999999988
Q ss_pred --CCCCCCCCCCCCCcHHHHHHHcC---ChhhHHHHHhCCCCCcc--------cCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044976 470 --SDQPGCSLSKKEQGIIHMVAGLG---FEWALNPILSCGVSINF--------RDINGWTALHWAARFGREKMVAALLAS 536 (846)
Q Consensus 470 --ad~n~~~~d~~G~T~LH~Aa~~G---~~~iv~~LL~~Gadin~--------~D~~G~TpLh~Aa~~G~~eiV~~LL~~ 536 (846)
++++. .|..|.||||+|+..| +.+++++|++.|++++. .|..|+||||+|+..|+.++|++|++.
T Consensus 224 ~~~~~~~--~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ 301 (373)
T 2fo1_E 224 LKGDIEE--LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301 (373)
T ss_dssp HHHTTSC--CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred cccChhh--cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh
Confidence 79999 9999999999999998 89999999999999986 677999999999999999999999988
Q ss_pred C-CCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCC
Q 044976 537 G-ASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISST 615 (846)
Q Consensus 537 G-A~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (846)
| ++++ .+|..|.||||+|+..|+.+++++|+++|++.+..| .. +.++...+... +.
T Consensus 302 ~~~~~n------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d-----~~--g~t~l~~A~~~----------g~ 358 (373)
T 2fo1_E 302 KGSNKD------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD-----AT--DHTARQLAQAN----------NH 358 (373)
T ss_dssp SCCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-----SS--SCCHHHHHHHT----------TC
T ss_pred cCCCcc------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC-----CC--CCCHHHHHHHc----------CC
Confidence 6 7655 899999999999999999999999999998665544 22 33443333322 45
Q ss_pred ccccchhhhhhhH
Q 044976 616 EDQLSLKDTLAAV 628 (846)
Q Consensus 616 ~d~~~l~~sl~A~ 628 (846)
.+.+.++...++.
T Consensus 359 ~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 359 HNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHhcCcc
Confidence 6677777666544
No 27
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=227.44 Aligned_cols=180 Identities=16% Similarity=0.067 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHH
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSK 465 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~l 465 (846)
.++.++++.|+..+. +.+..+..+.++++.|+..|..++++.|+. .+++++..+. .|+.|+..+..+++..|
T Consensus 13 ~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 88 (261)
T 2xai_A 13 HGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88 (261)
T ss_dssp HTCHHHHHHHHHTTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 346788999998876 556677788999999999999999999987 4677776665 59999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 044976 466 SLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTD 545 (846)
Q Consensus 466 l~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D 545 (846)
++.|++++. +..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|++.|++++
T Consensus 89 l~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---- 161 (261)
T 2xai_A 89 LQHGASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---- 161 (261)
T ss_dssp HHTTCCSSC---SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT----
T ss_pred HHCCCCCCC---CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC----
Confidence 999999986 3469999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 546 PNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 546 ~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
. |..|.||||+|+..|+.+++++|+++|++.+..|
T Consensus 162 --~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d 196 (261)
T 2xai_A 162 --Q-GKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196 (261)
T ss_dssp --C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred --C-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 3 7899999999999999999999999998765544
No 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.91 E-value=5.4e-24 Score=220.55 Aligned_cols=179 Identities=18% Similarity=0.130 Sum_probs=156.7
Q ss_pred HHHHHHHhc----CCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHH
Q 044976 393 VRFVQMLLS----DSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSS 464 (846)
Q Consensus 393 ~rlv~lLl~----~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ 464 (846)
.++++.|+. .+. +.+..+..+.++++.|+..+..++++.|+. .+.+++..+. .++.|+..+..+++..
T Consensus 22 ~~~v~~Ll~~~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 97 (241)
T 1k1a_A 22 LPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRA 97 (241)
T ss_dssp HHHHHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 344555543 444 455667778999999999999999999987 5666666554 5999999999999999
Q ss_pred HhhCCC----CCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 044976 465 KSLRES----DQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRD-INGWTALHWAARFGREKMVAALLASGAS 539 (846)
Q Consensus 465 ll~~Ga----d~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D-~~G~TpLh~Aa~~G~~eiV~~LL~~GA~ 539 (846)
|+..|. +++. .|..|.||||+|+..|+.+++++|++.|++++..| ..|.||||+|+..|+.++|++|+++|++
T Consensus 98 Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 175 (241)
T 1k1a_A 98 LLDSAAPGTLDLEA--RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175 (241)
T ss_dssp HHHHSCTTSCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCCccccccc--cCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999987 7888 89999999999999999999999999999999999 8999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 540 AGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 540 v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
++ .+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 176 ~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 213 (241)
T 1k1a_A 176 VN------AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213 (241)
T ss_dssp TT------CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CC------CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcC
Confidence 65 889999999999999999999999999998766544
No 29
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.91 E-value=1.3e-23 Score=209.17 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=135.8
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGRE 527 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~ 527 (846)
..|..|+..+..++++.|++.|+++|. +|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~--~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNA--SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence 347789999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhccc
Q 044976 528 KMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSI 607 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~ 607 (846)
++|++|+++|+++| .+|..|+||||+|+..|+.+++++|+++|++++..| +. +.++...+...
T Consensus 84 ~~v~~Ll~~gadvn------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-----~~--G~TpL~~A~~~---- 146 (169)
T 4gpm_A 84 EVVKLLISKGADVN------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD-----SD--GRTPLDLAREH---- 146 (169)
T ss_dssp HHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----TT--SCCHHHHHHHT----
T ss_pred HHHHHHHHCcCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-----CC--CCCHHHHHHHc----
Confidence 99999999999766 889999999999999999999999999998665543 33 44554444333
Q ss_pred ccccCCCCccccchhhhhhhHhh
Q 044976 608 SNGNISSTEDQLSLKDTLAAVRN 630 (846)
Q Consensus 608 ~~~~~~~~~d~~~l~~sl~A~rn 630 (846)
+..+.+.++.+.||...
T Consensus 147 ------g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 147 ------GNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp ------TCHHHHHHHHTC-----
T ss_pred ------CCHHHHHHHHHCCCCcC
Confidence 56788888888886543
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=4.9e-24 Score=220.38 Aligned_cols=182 Identities=15% Similarity=0.016 Sum_probs=155.1
Q ss_pred HHHHHHHHhcC-CCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCCh-----h----hhhHHHHHHHHhcHHHH
Q 044976 392 LVRFVQMLLSD-SSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSL-----D----TIDWLLQEVLKDKLQQW 461 (846)
Q Consensus 392 ~~rlv~lLl~~-~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~-----~----~~d~~L~~Al~~~~~~~ 461 (846)
+.++++.|+.. +. +.+..+..+.++++.|+..|..++++.|+..+ +++ + .....|+.|+..+..++
T Consensus 15 ~~~~v~~Ll~~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 15 DVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALHIAVINQNVNL 90 (232)
T ss_dssp CHHHHHHHHTTTCS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHhcCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCCCcCHHHHHHHcCCHHH
Confidence 56778888876 44 55666778899999999999999999988743 332 2 22346999999999999
Q ss_pred HHHHhhCCCCCCCCCCCC-------------CCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 462 LSSKSLRESDQPGCSLSK-------------KEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 462 l~~ll~~Gad~n~~~~d~-------------~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
+..|+..|++++. .+. .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 91 v~~Ll~~g~~~~~--~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~ 168 (232)
T 2rfa_A 91 VRALLARGASVSA--RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168 (232)
T ss_dssp HHHHHHTTCCTTC--CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHH
T ss_pred HHHHHhCCCCCCc--ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChH
Confidence 9999999999988 655 7999999999999999999999999999999999999999999999999
Q ss_pred HH----HHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 044976 529 MV----AALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTS 579 (846)
Q Consensus 529 iV----~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~ 579 (846)
++ ++|++.|++++...-.+.+|..|.||||+|+..|+.+++++|+++|...
T Consensus 169 ~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 88 9999999976311111478999999999999999999999999998543
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.90 E-value=5.5e-24 Score=225.04 Aligned_cols=254 Identities=18% Similarity=0.102 Sum_probs=201.6
Q ss_pred CCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HHHHHHHHHHHHHhcCCCCCCCCCcccccCcch
Q 044976 344 PGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DELLLLVRFVQMLLSDSSVNKEEGVELGYHELR 419 (846)
Q Consensus 344 ~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~ 419 (846)
.|.+||+.|+..+ ..+. ++....+.+++......+.++ +...++.+++++|+..+. +.+..+..+.++
T Consensus 4 ~g~~~L~~A~~~g~~~~v-----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~ 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLV-----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA---DPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCH
T ss_pred ccchHHHHHHHcCCHHHH-----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcccCCCCCCH
Confidence 3778999999655 3222 233444555552223333343 556678999999999887 455667788999
Q ss_pred hchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCC----------CCCCCcHH
Q 044976 420 GMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSL----------SKKEQGII 485 (846)
Q Consensus 420 l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~----------d~~G~T~L 485 (846)
++.|+..+..++++.|+. .+.+++..+. .|+.|+..+..++++.|+..|++++. . +..|.|||
T Consensus 76 L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL--RRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHHHTCHHHHHHHHH-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCCCCHHHHHTTCCCCCHH
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc--ccccHHHHHhhccCCCcHH
Confidence 999999999999999987 5666766554 59999999999999999999999988 6 78899999
Q ss_pred HHHHHcCChhhHHHHHhC-CCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 044976 486 HMVAGLGFEWALNPILSC-GVSINFRDINGWTALHWAARFGR----EKMVAALLASGASAGAVTDPNPLDPTGRTPAFIA 560 (846)
Q Consensus 486 H~Aa~~G~~~iv~~LL~~-Gadin~~D~~G~TpLh~Aa~~G~----~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA 560 (846)
|+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+ .+++++|++.|++++ .+|..|.||||+|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~------~~~~~g~t~L~~A 226 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN------VRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS------CCCTTSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC------CcCCCCCcHHHHH
Confidence 999999999999999987 99999999999999999999999 999999999999765 8899999999999
Q ss_pred HHcCcHHHHHHHHH-cCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCCccccchhhhhhhHhhh
Q 044976 561 ASSGHKGLAGYLSE-VALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDTLAAVRNA 631 (846)
Q Consensus 561 ~~~G~~~iv~~Ll~-~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~A~rna 631 (846)
+..|+.+++++|++ .|++.+..+ .. +.++...+... +..+.+.++...||..+.
T Consensus 227 ~~~~~~~~v~~Ll~~~g~~~~~~~-----~~--g~t~l~~A~~~----------~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 227 VEKKHLGLVQRLLEQEHIEINDTD-----SD--GKTALLLAVEL----------KLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHTTCHHHHHHHHHSSSCCTTCCC-----TT--SCCHHHHHHHT----------TCHHHHHHHHHHSSCSCC
T ss_pred HHcCCHHHHHHHHhccCCCccccC-----CC--CCcHHHHHHHc----------CcHHHHHHHHHcCCCCCc
Confidence 99999999999999 787655443 32 34444433332 456777777777765543
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.6e-24 Score=226.83 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHhcCCCCC-----CCCCcccccCcchhchhhhcCcHH-HHHHHHccCCCChhhhhH----HHHHHHHh
Q 044976 387 DELLLLVRFVQMLLSDSSVN-----KEEGVELGYHELRGMKADDDLWGQ-VIDSLLVGSGNSLDTIDW----LLQEVLKD 456 (846)
Q Consensus 387 ~~~~l~~rlv~lLl~~~~~~-----~~~~~~~~~~~~~l~~aa~~g~~~-~i~~ll~~~~~~~~~~d~----~L~~Al~~ 456 (846)
+...++.++|++|+..+... ...+..+..+.++++.++..+... ++..|+ ..|+++|..+. .||.|+..
T Consensus 18 A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~G~TpLh~A~~~ 96 (269)
T 4b93_B 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQDGSSPLHVAALH 96 (269)
T ss_dssp HHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHc
Confidence 44455788999999876531 112334455678888888766554 444444 47788887765 59999999
Q ss_pred cHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044976 457 KLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLAS 536 (846)
Q Consensus 457 ~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~ 536 (846)
+..+++..|+..|++++. .+..|.||||+|+..++.+++++|++.|+++|.+|..|+||||+||..|+.++|++||++
T Consensus 97 g~~~~v~~Ll~~~a~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 174 (269)
T 4b93_B 97 GRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174 (269)
T ss_dssp TCTTHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred CcHHHHHHHHhcCCCcCc--cCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 537 GASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 537 GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|+++| .+|..|.||||+|+..|+.++|++|+++|++++..|
T Consensus 175 gadvn------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 175 GASIN------ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp TCCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCCC------ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 99766 889999999999999999999999999998765544
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.90 E-value=3.3e-24 Score=230.16 Aligned_cols=240 Identities=15% Similarity=0.149 Sum_probs=187.1
Q ss_pred ccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCC-cccceeeeeeeccCCCCCCCccccccCCCH---HHH
Q 044976 314 SAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNR-ESCSEVKEFDYRVKPNSYDNWSQKEATKSH---DEL 389 (846)
Q Consensus 314 ~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~-~~~sev~~Fey~~~~~~~~~~~~~~~~~~~---~~~ 389 (846)
+.+||..|+.+++..|++.|+.+.. .+..|.||||+||..+ ..+.+. ....+++++.. ...+.++ +..
T Consensus 44 l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~-----Ll~~ga~~~~~-~~~g~tpL~~A~~ 115 (299)
T 1s70_B 44 FLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACIDDNVDMVKF-----LVENGANINQP-DNEGWIPLHAAAS 115 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHHTTCHHHHHH-----HHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHH-----HHHCCCCCCCC-CCCCCcHHHHHHH
Confidence 4499999999999999999987766 5677999999999655 333333 34556666622 2333333 666
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhHHHHHHHHhcHHHHHHHHhhCC
Q 044976 390 LLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDWLLQEVLKDKLQQWLSSKSLRE 469 (846)
Q Consensus 390 ~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~~L~~Al~~~~~~~l~~ll~~G 469 (846)
.++.+++++|+..+. +.+..+..+.++++.|+..+..+++..++...+.+++..+......... .+..++..|
T Consensus 116 ~g~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~ 188 (299)
T 1s70_B 116 CGYLDIAEYLISQGA---HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR----DARQWLNSG 188 (299)
T ss_dssp HTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHHhCCC---CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH----HHHHHHhcc
Confidence 778999999999887 4556677889999999999999999999888888877765544333322 223334444
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 044976 470 SDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPL 549 (846)
Q Consensus 470 ad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~ 549 (846)
...+.. .+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+
T Consensus 189 ~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~------~~ 261 (299)
T 1s70_B 189 HINDVR-HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME------AV 261 (299)
T ss_dssp CCCCCC-CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CC
T ss_pred Ccchhh-hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC------Cc
Confidence 444432 78899999999999999999999999999999999999999999999999999999999999765 89
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHc
Q 044976 550 DPTGRTPAFIAASSGHKGLAGYLSEV 575 (846)
Q Consensus 550 d~~G~TPL~lA~~~G~~~iv~~Ll~~ 575 (846)
|..|.||||+|+.....-+.+++-+.
T Consensus 262 d~~g~t~l~~A~~~~~~~l~~l~~~~ 287 (299)
T 1s70_B 262 NKVGQTAFDVADEDILGYLEELQKKQ 287 (299)
T ss_dssp CTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876554454444443
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.90 E-value=2.3e-23 Score=213.69 Aligned_cols=210 Identities=19% Similarity=0.144 Sum_probs=172.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhh
Q 044976 392 LVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSL 467 (846)
Q Consensus 392 ~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~ 467 (846)
+.++++.|+..+. ......+..+.++++.|+..|..++++.|+. .+.+++..+. .|+.|+..+..+++..|+.
T Consensus 3 ~~~~i~~Ll~~g~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 3 APAVISDFIYQGA--SLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp --CCEETTEETTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHcCC--CcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4456677777766 2334446778999999999999999999997 4666766654 5999999999999999999
Q ss_pred CCC-CCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 044976 468 RES-DQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDP 546 (846)
Q Consensus 468 ~Ga-d~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~ 546 (846)
.+. +++. .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++
T Consensus 80 ~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----- 152 (223)
T 2f8y_A 80 NRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD----- 152 (223)
T ss_dssp BTTSCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-----
T ss_pred cCCCCccc--CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----
Confidence 987 8888 99999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCCccccchhhhhh
Q 044976 547 NPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDTLA 626 (846)
Q Consensus 547 ~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~ 626 (846)
.+|..|.||||+|+..|+.+++++|+++|++.+..+. . +.++...+... +..+.+.++...+
T Consensus 153 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~--g~t~l~~A~~~----------~~~~i~~~L~~~g 214 (223)
T 2f8y_A 153 -MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH-----M--DRLPRDIAQER----------MHHDIVRLLDEYN 214 (223)
T ss_dssp -CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----T--CCCHHHHHHHT----------TCHHHHHHHHHTT
T ss_pred -CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc-----c--CCCHHHHHHHh----------cchHHHHHHHHcC
Confidence 8899999999999999999999999999986655432 2 23333323222 4556677777666
Q ss_pred hHh
Q 044976 627 AVR 629 (846)
Q Consensus 627 A~r 629 (846)
+.+
T Consensus 215 ~~~ 217 (223)
T 2f8y_A 215 LVR 217 (223)
T ss_dssp CSS
T ss_pred CCc
Confidence 543
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.90 E-value=2.8e-24 Score=231.19 Aligned_cols=208 Identities=14% Similarity=-0.005 Sum_probs=174.6
Q ss_pred CchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHHHHHHHHHHhc
Q 044976 322 DTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLLLVRFVQMLLS 401 (846)
Q Consensus 322 ~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~rlv~lLl~ 401 (846)
..+|...|.+.++ . ..+..|.||||+|+..+ +.+++++|+.
T Consensus 12 ~~~v~~lL~~~~~--~--~~d~~g~t~L~~A~~~g-----------------------------------~~~~v~~Ll~ 52 (285)
T 3kea_A 12 SKQLKSFLSSKDT--F--KADVHGHSASYYAIADN-----------------------------------NVRLVCTLLN 52 (285)
T ss_dssp HHHHHHHHHSTTT--T--CCCTTSCCHHHHHHHTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--C--ccCCCCCCHHHHHHHcC-----------------------------------CHHHHHHHHh
Confidence 3456665655542 2 25678999999998765 4578888888
Q ss_pred CCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCC
Q 044976 402 DSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSL 477 (846)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~ 477 (846)
.+. +.+.. .+.++++.|+..|..++++.|+. .+++++..+. .|+.|+..+..+++..|+..|++++. .
T Consensus 53 ~g~---~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~ 124 (285)
T 3kea_A 53 AGA---LKNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF--Y 124 (285)
T ss_dssp TTG---GGSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG--C
T ss_pred CCC---CCCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc--c
Confidence 876 22222 46889999999999999998887 5677776654 59999999999999999999999998 9
Q ss_pred CCCC-CcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 478 SKKE-QGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 478 d~~G-~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
|..| .||||+|+..|+.+++++|++.|+++... ..|+||||+|+..|+.++|++|+++|++++ .+|..|.||
T Consensus 125 ~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n------~~~~~g~t~ 197 (285)
T 3kea_A 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN------TNNSLLFIP 197 (285)
T ss_dssp SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC------TTCCCBCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC------cccCCCCCh
Confidence 9999 89999999999999999999999887332 289999999999999999999999999765 889999998
Q ss_pred -HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 -AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 -L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++++..+
T Consensus 198 ~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 198 DIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp THHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999877766
No 36
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=2.6e-23 Score=209.80 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHh
Q 044976 391 LLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKS 466 (846)
Q Consensus 391 l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll 466 (846)
++.+.++.|+..+. .+.+..+..+.++++.|+..+..++++.|+. .+++++..+. .++.|+..+..+++..|+
T Consensus 16 g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 16 RDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYML 92 (201)
T ss_dssp TCHHHHHHHHTCTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHcCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 35566777776655 2455566778899999999999999998887 4667766654 599999999999999999
Q ss_pred -hCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCC
Q 044976 467 -LRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCG-VSINFRDINGWTALHWAARFGR-----EKMVAALLASGAS 539 (846)
Q Consensus 467 -~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~G-adin~~D~~G~TpLh~Aa~~G~-----~eiV~~LL~~GA~ 539 (846)
..+.+++. .|..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|. .++|++|+++|++
T Consensus 93 ~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~ 170 (201)
T 3hra_A 93 KHATPDLNK--HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170 (201)
T ss_dssp HHSCCCTTC--CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC
T ss_pred hccCccccc--ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC
Confidence 67778888 9999999999999999999999999999 9999999999999999999998 9999999999997
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 044976 540 AGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVA 576 (846)
Q Consensus 540 v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~G 576 (846)
++ .+|..|.||||+|+..|+.+++++|+++|
T Consensus 171 ~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 171 QS------IKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TT------CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CC------ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 65 88999999999999999999999999887
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.90 E-value=1.1e-24 Score=226.20 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=131.6
Q ss_pred ccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCC------CCCCCCCCCC
Q 044976 412 ELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESD------QPGCSLSKKE 481 (846)
Q Consensus 412 ~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad------~n~~~~d~~G 481 (846)
.+..+.++++.|+..+..++++.|+. .+++++..+. .|+.|+..+..+++..|+..|++ ++. .|..|
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~~g 117 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA--TNYNG 117 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC--CCTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc--cCCCC
Confidence 34445566666666666666665554 3445554433 46777777777777777777765 355 78899
Q ss_pred CcHHHHHHHcCChhhHHHHHhCCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 044976 482 QGIIHMVAGLGFEWALNPILSCGVSINFRDI-NGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIA 560 (846)
Q Consensus 482 ~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~-~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA 560 (846)
.||||+|+..|+.+++++|++.|++++.+|. .|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|
T Consensus 118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~tpl~~A 191 (236)
T 1ikn_D 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN------RVTYQGYSPYQLT 191 (236)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC------CCCTTCCCGGGGC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------cccCCCCCHHHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999765 8899999999999
Q ss_pred HHcCcHHHHHHHHHcCCCCC
Q 044976 561 ASSGHKGLAGYLSEVALTSH 580 (846)
Q Consensus 561 ~~~G~~~iv~~Ll~~Ga~~~ 580 (846)
+..|+.+++++|+++|+++.
T Consensus 192 ~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TTSSCHHHHHHHHTTSCGGG
T ss_pred HccCchHHHHHHHHcchhhh
Confidence 99999999999999998654
No 38
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.90 E-value=7.7e-23 Score=211.00 Aligned_cols=186 Identities=17% Similarity=0.065 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHH
Q 044976 387 DELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWL 462 (846)
Q Consensus 387 ~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l 462 (846)
+...++.+.++.|+..+. ...+..+..+.++++.|+..|..++++.|+.. +.+++..+. .|+.|+..+..+++
T Consensus 13 A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v 89 (231)
T 3aji_A 13 LAYSGKLDELKERILADK--SLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIV 89 (231)
T ss_dssp HHHHTCHHHHHHHHHHCG--GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHhch--hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHH
Confidence 445566778887776654 23455567789999999999999999999874 666666554 59999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 044976 463 SSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGA 542 (846)
Q Consensus 463 ~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~ 542 (846)
..|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 90 ~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 166 (231)
T 3aji_A 90 KALLVKGAHVNA--VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN- 166 (231)
T ss_dssp HHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-
T ss_pred HHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 543 VTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 543 ~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
.+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 167 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 202 (231)
T 3aji_A 167 -----IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202 (231)
T ss_dssp -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred -----ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence 889999999999999999999999999998665443
No 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=1e-23 Score=233.58 Aligned_cols=221 Identities=11% Similarity=-0.022 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhh--hhHHHHHHHHhcHHHHHHH
Q 044976 387 DELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDT--IDWLLQEVLKDKLQQWLSS 464 (846)
Q Consensus 387 ~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~--~d~~L~~Al~~~~~~~l~~ 464 (846)
+...++.+++++|+..+. +.+..+..+.++++.|+..|+.++++.|+..+. +.+. ....|+.|+..+..+++..
T Consensus 27 Aa~~g~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 27 AARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAKYLASVGE-VHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-CCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCC---CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CccccCCCCHHHHHHHcCCHHHHHH
Confidence 444457889999999876 556677788999999999999999999988543 3433 3346999999999999999
Q ss_pred HhhC----CCCCCC---------------CCCCCCCCcHHHHHHHcC--ChhhHHHHHhCCCCCcccCCCCCcHHHHHHH
Q 044976 465 KSLR----ESDQPG---------------CSLSKKEQGIIHMVAGLG--FEWALNPILSCGVSINFRDINGWTALHWAAR 523 (846)
Q Consensus 465 ll~~----Gad~n~---------------~~~d~~G~T~LH~Aa~~G--~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~ 523 (846)
|+.. |++++. ...|..|.||||+|+..| +.++|++|++.|+++|.+|..|+||||+|+.
T Consensus 103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 182 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME 182 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 9988 665432 005678999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhh
Q 044976 524 FGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEIT 603 (846)
Q Consensus 524 ~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~ 603 (846)
.|+.++|++|+++|++... .|++..|..|.||||+|+..|+.+++++|+++|++++..+ .. +.++...+...
T Consensus 183 ~g~~~~v~~Ll~~g~~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d-----~~--g~tpL~~A~~~ 254 (364)
T 3ljn_A 183 FRNREALDLMMDTVPSKSS-LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED-----NE--HTVPLYLSVRA 254 (364)
T ss_dssp TTCHHHHHHHHHHCSCSSS-CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC-----TT--SCCHHHHHHHT
T ss_pred cCCHHHHHHHHhccccccc-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----CC--CCCHHHHHHHh
Confidence 9999999999999997211 1245889999999999999999999999999998765544 32 44444444433
Q ss_pred hcccccccCCCCccccchhhhhhhHh
Q 044976 604 VNSISNGNISSTEDQLSLKDTLAAVR 629 (846)
Q Consensus 604 ~~~~~~~~~~~~~d~~~l~~sl~A~r 629 (846)
+..+.+.++...++..
T Consensus 255 ----------g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 255 ----------AMVLLTKELLQKTDVF 270 (364)
T ss_dssp ----------CCHHHHHHHHHHSCHH
T ss_pred ----------ChHHHHHHHHHcCCch
Confidence 4556676766666544
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.89 E-value=1.5e-22 Score=209.12 Aligned_cols=193 Identities=18% Similarity=0.072 Sum_probs=164.3
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCC-----CCCCCCCCCCcHHH
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQ-----PGCSLSKKEQGIIH 486 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~-----n~~~~d~~G~T~LH 486 (846)
+.++++.|+..|..++++.|+...+.+++..+. .|+.|+..+..++++.|+..|+++ +. .|..|.||||
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~~g~t~L~ 80 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS--ELYEGQTALH 80 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCS--TTTTTCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccc--cCCCCcCHHH
Confidence 568999999999999999999977888887765 599999999999999999999887 55 7889999999
Q ss_pred HHHHcCChhhHHHHHhCCCCCcccCC-------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 044976 487 MVAGLGFEWALNPILSCGVSINFRDI-------------NGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTG 553 (846)
Q Consensus 487 ~Aa~~G~~~iv~~LL~~Gadin~~D~-------------~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G 553 (846)
+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.++|++|+++|++++ .+|..|
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g 154 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR------AQDSLG 154 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTS
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCC
Confidence 99999999999999999999999876 79999999999999999999999999765 889999
Q ss_pred CcHHHHHHHcCcHHHH----HHHHHcCCCCCCCCC-ccccccccCCchhHHHhhhhcccccccCCCCccccchhhhhhhH
Q 044976 554 RTPAFIAASSGHKGLA----GYLSEVALTSHLSSL-TLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDTLAAV 628 (846)
Q Consensus 554 ~TPL~lA~~~G~~~iv----~~Ll~~Ga~~~~~d~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~A~ 628 (846)
.||||+|+..|+.+++ ++|+++|++....++ +..+.. +.++...+... ++.+.+.++.+.++.
T Consensus 155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~--g~tpl~~A~~~----------g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ--GLTPFKLAGVE----------GNIVMFQHLMQKRKH 222 (232)
T ss_dssp CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT--SCCHHHHHHHH----------TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC--CCCHHHHHHHc----------CCHHHHHHHHhcCcc
Confidence 9999999999999988 999999998776555 344443 44444444333 456677777766644
No 41
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.89 E-value=4.4e-24 Score=224.57 Aligned_cols=177 Identities=18% Similarity=0.015 Sum_probs=147.6
Q ss_pred HHHHHhcCCCCCCCCCc----ccccCcchhchhhhc---CcHHHHHHHHccCCCChh---------------hhhHHHHH
Q 044976 395 FVQMLLSDSSVNKEEGV----ELGYHELRGMKADDD---LWGQVIDSLLVGSGNSLD---------------TIDWLLQE 452 (846)
Q Consensus 395 lv~lLl~~~~~~~~~~~----~~~~~~~~l~~aa~~---g~~~~i~~ll~~~~~~~~---------------~~d~~L~~ 452 (846)
++++|+..+. +.+. .+..+.++++.|+.. +..++++.|+..+ ++.+ .....||.
T Consensus 21 ll~~l~~~g~---~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~d~~g~t~L~~ 96 (256)
T 2etb_A 21 LLEYLRWNSK---YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLVNAQCTDEFYQGHSALHI 96 (256)
T ss_dssp HHHHHHHHTC---CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGGGCCCCSTTTTTCCHHHH
T ss_pred HHHHHHHcCC---CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-CcccchhhhcccccccccccCCCHHHH
Confidence 4566666555 3333 567788899999988 8888888887632 2221 13346999
Q ss_pred HHHhcHHHHHHHHhhCCCCCCCCCCCCC-------------CCcHHHHHHHcCChhhHHHHHh---CCCCCcccCCCCCc
Q 044976 453 VLKDKLQQWLSSKSLRESDQPGCSLSKK-------------EQGIIHMVAGLGFEWALNPILS---CGVSINFRDINGWT 516 (846)
Q Consensus 453 Al~~~~~~~l~~ll~~Gad~n~~~~d~~-------------G~T~LH~Aa~~G~~~iv~~LL~---~Gadin~~D~~G~T 516 (846)
|+..+..++++.|+..|++++. .|.. |.||||+|+..|+.+++++|++ .|+++|.+|..|+|
T Consensus 97 A~~~g~~~~v~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~T 174 (256)
T 2etb_A 97 AIEKRSLQCVKLLVENGADVHL--RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174 (256)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC--CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCC
Confidence 9999999999999999999998 8776 9999999999999999999999 99999999999999
Q ss_pred HHHHHHH--cCCHH-------HHHHHHHcCCCCCCCCCC-CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 044976 517 ALHWAAR--FGREK-------MVAALLASGASAGAVTDP-NPLDPTGRTPAFIAASSGHKGLAGYLSEVAL 577 (846)
Q Consensus 517 pLh~Aa~--~G~~e-------iV~~LL~~GA~v~~~~D~-~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga 577 (846)
|||+|+. .|+.+ +|++|+++|++++...+. +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 175 pLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 175 VLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 9999999 88988 999999999987210000 4889999999999999999999999999985
No 42
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=7.1e-23 Score=202.04 Aligned_cols=160 Identities=22% Similarity=0.133 Sum_probs=143.7
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHc
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGL 491 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~ 491 (846)
+.++++.|+..|..++++.++......++..+. .|+.|+..+..++++.|+..|++++. .|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh--hcccCCCHHHHHHHC
Confidence 456889999999999999999876554555554 59999999999999999999999999 999999999999999
Q ss_pred CChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 044976 492 GFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGY 571 (846)
Q Consensus 492 G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~ 571 (846)
|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT------TEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------ccCCCCCCHHHHHHHhCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 889999999999999999999999
Q ss_pred HHHcCCCCCCCC
Q 044976 572 LSEVALTSHLSS 583 (846)
Q Consensus 572 Ll~~Ga~~~~~d 583 (846)
|+++|++....+
T Consensus 154 L~~~~~~~~~~~ 165 (172)
T 3v30_A 154 IENHILKLFQSN 165 (172)
T ss_dssp HHHHHHHHSCC-
T ss_pred HHHHHHHHhccc
Confidence 999997544433
No 43
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.88 E-value=1.1e-22 Score=198.23 Aligned_cols=154 Identities=20% Similarity=0.149 Sum_probs=136.0
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHc
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGL 491 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~ 491 (846)
..++++.|+..|..++++.|+. .+.+++..+. .|+.|+. +..+++..|+..|++++. .|..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL--KDRTGFAVIHDAARA 80 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHc
Confidence 3467788888888888888886 4556665544 4777777 888999999999999999 999999999999999
Q ss_pred CChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 044976 492 GFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGY 571 (846)
Q Consensus 492 G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~ 571 (846)
|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|++.|++. ++..|..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999973 34889999999999999999999999
Q ss_pred HHHcCCC
Q 044976 572 LSEVALT 578 (846)
Q Consensus 572 Ll~~Ga~ 578 (846)
|+++||+
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999974
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.88 E-value=8.1e-24 Score=227.55 Aligned_cols=210 Identities=12% Similarity=-0.012 Sum_probs=181.5
Q ss_pred CcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCCCCCCCccccccCCCHHHHHH
Q 044976 312 SESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKPNSYDNWSQKEATKSHDELLL 391 (846)
Q Consensus 312 ~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~~~~~~~~~~~~~~~~~~~~l 391 (846)
+++.+||..|+.++++.|++.|+.+... .|.||||+|+..+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g----------------------------------- 73 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLE----------------------------------- 73 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSS-----------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcC-----------------------------------
Confidence 3455999999999999999999876652 4999999999765
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhh-----HHHHHHHHhcHHHHHHHHh
Q 044976 392 LVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTID-----WLLQEVLKDKLQQWLSSKS 466 (846)
Q Consensus 392 ~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d-----~~L~~Al~~~~~~~l~~ll 466 (846)
+.+++++|+..+. +.+..+..+.+|++.|+..+..++++.|+.. +++++..+ ..|+.|+..+..+++..|+
T Consensus 74 ~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 74 DTKIVKILLFSGL---DDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp SCHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHCCC---CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3467888998877 4556677889999999999999999999885 66676653 5699999999999999999
Q ss_pred hCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 044976 467 LRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTA-LHWAARFGREKMVAALLASGASAGAVTD 545 (846)
Q Consensus 467 ~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~Tp-Lh~Aa~~G~~eiV~~LL~~GA~v~~~~D 545 (846)
..|++... . ..|.||||+|+..|+.+++++|+++|+++|.+|..|+|| ||+|+..|+.++|++|+++|++++
T Consensus 150 ~~g~~~~~--~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~---- 222 (285)
T 3kea_A 150 SEIPSTFD--L-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY---- 222 (285)
T ss_dssp TTSCTTCC--C-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST----
T ss_pred hCCCcccc--c-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC----
Confidence 99988744 2 389999999999999999999999999999999999998 999999999999999999999876
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 044976 546 PNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSH 580 (846)
Q Consensus 546 ~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~ 580 (846)
..| +.|+..|+.+++++|+++|++..
T Consensus 223 --~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 223 --SAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp --TTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred --CCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 555 35677999999999999997543
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.88 E-value=1.3e-23 Score=223.43 Aligned_cols=163 Identities=18% Similarity=0.088 Sum_probs=137.4
Q ss_pred cccCcchhchhhhc---CcHHHHHHHHccCCC--------C-----h-hhhhHHHHHHHHhcHHHHHHHHhhCCCCCCCC
Q 044976 413 LGYHELRGMKADDD---LWGQVIDSLLVGSGN--------S-----L-DTIDWLLQEVLKDKLQQWLSSKSLRESDQPGC 475 (846)
Q Consensus 413 ~~~~~~~l~~aa~~---g~~~~i~~ll~~~~~--------~-----~-~~~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~ 475 (846)
+..+.++++.|+.. +..++++.|+..+.. + . ......|+.|+..+..++++.|+..|++++.
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~- 129 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA- 129 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-
Confidence 55677888888764 777788777764210 0 0 1233469999999999999999999999998
Q ss_pred CCCC--------------CCCcHHHHHHHcCChhhHHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHH
Q 044976 476 SLSK--------------KEQGIIHMVAGLGFEWALNPILS---CGVSINFRDINGWTALHWAARFGR---------EKM 529 (846)
Q Consensus 476 ~~d~--------------~G~T~LH~Aa~~G~~~iv~~LL~---~Gadin~~D~~G~TpLh~Aa~~G~---------~ei 529 (846)
.+. .|.||||+|+..|+.++|++|++ .|+++|.+|..|+||||+|+..|+ .++
T Consensus 130 -~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 130 -AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp -CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred -cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 776 79999999999999999999999 999999999999999999999998 899
Q ss_pred HHHHHHcCCCCCCCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 044976 530 VAALLASGASAGAVT-DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVAL 577 (846)
Q Consensus 530 V~~LL~~GA~v~~~~-D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga 577 (846)
|++|+++|++++... -++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 999999999875210 013589999999999999999999999999998
No 46
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=1.1e-22 Score=199.35 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=136.6
Q ss_pred cccCcchhchhhhcCcHHHHHHHHccCCCChhhhh----HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHH
Q 044976 413 LGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTID----WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMV 488 (846)
Q Consensus 413 ~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d----~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~A 488 (846)
+..+.++++.|+..|..++++.++...+.+.+..+ ..|+.|+..+..++++.|+..|++++. .|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--cCCCCCCHHHHH
Confidence 44567788999999999999999886665555544 369999999999999999999999999 999999999999
Q ss_pred HHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 044976 489 AGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGL 568 (846)
Q Consensus 489 a~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~i 568 (846)
+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+. |+.++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~a~~-~~~~i 155 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT------KKNRDGNTPLDLVKD-GDTDI 155 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCTGGGSCT-TCHHH
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCCChhHhHhc-CChHH
Confidence 99999999999999999999999999999999999999999999999999755 889999999999877 88999
Q ss_pred HHHHHHcCC
Q 044976 569 AGYLSEVAL 577 (846)
Q Consensus 569 v~~Ll~~Ga 577 (846)
+++|+++|+
T Consensus 156 ~~~L~~~gA 164 (165)
T 3twr_A 156 QDLLRGDAA 164 (165)
T ss_dssp HHHHHTC--
T ss_pred HHHHhhccc
Confidence 999999886
No 47
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.88 E-value=4.4e-22 Score=196.40 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=134.3
Q ss_pred cCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHH
Q 044976 415 YHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAG 490 (846)
Q Consensus 415 ~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~ 490 (846)
...++++.|+..|..++++.|+. .+.+++..+. .|+.|+..+..+++..|+..|++++. .|..|.||||+|+.
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLAAL 89 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHH
T ss_pred cccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHH
Confidence 34567778888888888887776 3555655543 58888888888999999999999999 99999999999999
Q ss_pred cCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 044976 491 LGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAG 570 (846)
Q Consensus 491 ~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~ 570 (846)
.|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.++++
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN------AQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999999765 88999999999999999999999
Q ss_pred HHHHcC
Q 044976 571 YLSEVA 576 (846)
Q Consensus 571 ~Ll~~G 576 (846)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 999876
No 48
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.88 E-value=1.6e-22 Score=201.23 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=145.3
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHc
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGL 491 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~ 491 (846)
..++++.|+..|..++++.++...+.+++..+. .|+.|+..+..+++..|+..|++++. .|..|.||||+|+..
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAASH 82 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHc
Confidence 456788899999999999999877777766655 59999999999999999999999999 999999999999999
Q ss_pred CChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 044976 492 GFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGY 571 (846)
Q Consensus 492 G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~ 571 (846)
|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||++|+..++.+++++
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~tpl~~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS------ICNKYGEMPVDKAKAPLRELLRER 156 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS------BCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc------hhccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 889999999999999999999999
Q ss_pred HHHcCCCCCCCC
Q 044976 572 LSEVALTSHLSS 583 (846)
Q Consensus 572 Ll~~Ga~~~~~d 583 (846)
|+++|++.+..+
T Consensus 157 L~~~g~~~~~~~ 168 (179)
T 3f6q_A 157 AEKMGQNLNRIP 168 (179)
T ss_dssp HHHTTCCCSCBC
T ss_pred HHHhhcCcccCC
Confidence 999998765433
No 49
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.88 E-value=3.1e-22 Score=212.04 Aligned_cols=196 Identities=16% Similarity=0.047 Sum_probs=162.1
Q ss_pred cccccCcchhchhhhcCcHHHHHHHHccCCC--Chhhhh----HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcH
Q 044976 411 VELGYHELRGMKADDDLWGQVIDSLLVGSGN--SLDTID----WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGI 484 (846)
Q Consensus 411 ~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~--~~~~~d----~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~ 484 (846)
..+..+.++++.|+..|..++++.|+..+.. .++..+ ..||.|+..+..++++.|+..|++++. .|..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~tp 81 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV--AERGGHTA 81 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC--CCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCH
Confidence 3466788999999999999999998863221 144443 369999999999999999999999999 99999999
Q ss_pred HHHHHHcCChhhHHHHHhCCCC-----------------------------------------------CcccCCCCCcH
Q 044976 485 IHMVAGLGFEWALNPILSCGVS-----------------------------------------------INFRDINGWTA 517 (846)
Q Consensus 485 LH~Aa~~G~~~iv~~LL~~Gad-----------------------------------------------in~~D~~G~Tp 517 (846)
||+|+..|+.+++++|++.|++ ++.+|..|+||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 9999999999999999998865 77889999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCch
Q 044976 518 LHWAARFGREKMVAALLASGASAGAVTDPNPLDP-TGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSA 596 (846)
Q Consensus 518 Lh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~-~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~ 596 (846)
||+|+..|+.++|++|+++|++++ ..+. .|.||||+|+..|+.+++++|+++|++++..+ .. +.++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d-----~~--g~tp 228 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLN------KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM-----YG--GRTP 228 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTT------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----TT--SCCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc-----cC--CCCH
Confidence 999999999999999999999876 6664 49999999999999999999999998766544 22 3344
Q ss_pred hHHHhhhhcccccccCCCCccccchhhhhhhHhhh
Q 044976 597 EVQAEITVNSISNGNISSTEDQLSLKDTLAAVRNA 631 (846)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~A~rna 631 (846)
...+... +..+.+.++...||..+.
T Consensus 229 L~~A~~~----------~~~~~v~~Ll~~ga~~~~ 253 (282)
T 1oy3_D 229 LGSALLR----------PNPILARLLRAHGAPEPE 253 (282)
T ss_dssp HHHHHTS----------SCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHc----------CCcHHHHHHHHcCCCcCc
Confidence 4433322 456777777777776654
No 50
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.88 E-value=1.8e-22 Score=202.95 Aligned_cols=157 Identities=22% Similarity=0.177 Sum_probs=143.8
Q ss_pred cccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHH
Q 044976 411 VELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIH 486 (846)
Q Consensus 411 ~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH 486 (846)
..+..+.++++.|+..|..++++.|+.. +.+++..+. .|+.|+..+..+++..|+..|++++. .|..|.||||
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~ 106 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLM 106 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHH
Confidence 3456788999999999999999988874 455555543 69999999999999999999999999 9999999999
Q ss_pred HHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q 044976 487 MVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHK 566 (846)
Q Consensus 487 ~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~ 566 (846)
+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS------ARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------CBCTTSCBHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------CcCCCCCCHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999765 8899999999999999999
Q ss_pred HHHHHHHHcC
Q 044976 567 GLAGYLSEVA 576 (846)
Q Consensus 567 ~iv~~Ll~~G 576 (846)
+++++|+++|
T Consensus 181 ~~v~~Ll~~~ 190 (192)
T 2rfm_A 181 EVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999999876
No 51
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=213.63 Aligned_cols=186 Identities=15% Similarity=0.089 Sum_probs=160.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHH---
Q 044976 382 ATKSHDELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVL--- 454 (846)
Q Consensus 382 ~~~~~~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al--- 454 (846)
....++...++...++.|+..... ...+..+..+.++++.|+..|..++++.|+..+..+++..+. .++.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~-~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLD-YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHH-HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHh-hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 344566777788877777654321 124556778899999999999999999999866557776665 477777
Q ss_pred --HhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 044976 455 --KDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAA 532 (846)
Q Consensus 455 --~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~ 532 (846)
..+..+++..|+..|.+.+. .|..|.||||+|+..|+.++|++|++.|+++|.+|..|+||||+|+..|+.++|++
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAK--ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 56788999999999999888 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 044976 533 LLA-SGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVA 576 (846)
Q Consensus 533 LL~-~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~G 576 (846)
|++ .|++++ .+|..|.||||+|+..|+.+++++|++++
T Consensus 235 Ll~~~gad~~------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 235 LLAVPSCDIS------LTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHTSTTCCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHhcCCCCCc------CcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999 899765 89999999999999999999999999986
No 52
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.87 E-value=3.9e-22 Score=195.76 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=141.6
Q ss_pred cCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHH
Q 044976 415 YHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAG 490 (846)
Q Consensus 415 ~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~ 490 (846)
.+.++++.|+..|..++++.++.. +.+++..+. .|+.|+..+..+++..|+..|++++. .|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHH
Confidence 456889999999999999998875 455666554 59999999999999999999999999 99999999999999
Q ss_pred cCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 044976 491 LGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAG 570 (846)
Q Consensus 491 ~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~ 570 (846)
.|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.++++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT------IETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999765 88999999999999999999999
Q ss_pred HHHHcCC
Q 044976 571 YLSEVAL 577 (846)
Q Consensus 571 ~Ll~~Ga 577 (846)
+|+++++
T Consensus 153 ~L~~~~~ 159 (167)
T 3v31_A 153 VIESHLL 159 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 53
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.87 E-value=2.7e-21 Score=195.03 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=147.4
Q ss_pred cCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHH
Q 044976 415 YHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAG 490 (846)
Q Consensus 415 ~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~ 490 (846)
.+.++++.|+..+..+.+..++...+.+++..+. .|+.|+..+..++++.|++.|++++. .|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL--QNSISDSPYLYAGA 81 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHH
Confidence 4678999999999999999999888767777654 59999999999999999999999999 99999999999999
Q ss_pred cCChhhHHHHH-hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCcHHHHHHHcCc---
Q 044976 491 LGFEWALNPIL-SCGVSINFRDINGWTALHWAARFGREKMVAALLASG-ASAGAVTDPNPLDPTGRTPAFIAASSGH--- 565 (846)
Q Consensus 491 ~G~~~iv~~LL-~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~G-A~v~~~~D~~~~d~~G~TPL~lA~~~G~--- 565 (846)
.|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|++.| ++++ .+|..|.||||+|+..|.
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID------FQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT------CCCTTSCCHHHHHHHSSCCSH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC------CCCCCCCCHHHHHHHhccchh
Confidence 99999999999 677899999999999999999999999999999999 7654 889999999999999987
Q ss_pred --HHHHHHHHHcCCCCCCCC
Q 044976 566 --KGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 566 --~~iv~~Ll~~Ga~~~~~d 583 (846)
.+++++|+++|++++..+
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~ 175 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKD 175 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCC
T ss_pred hHHHHHHHHHHCCCCCCccC
Confidence 999999999998766544
No 54
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.86 E-value=2.3e-22 Score=191.34 Aligned_cols=121 Identities=22% Similarity=0.178 Sum_probs=113.7
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCC-CCcHHHHHHHcCCH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDIN-GWTALHWAARFGRE 527 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~-G~TpLh~Aa~~G~~ 527 (846)
.|+.|+..+..++++.|++.|++++. .|..|.||||+|+. |+.+++++|+++|+++|.+|.. |+||||+|+..|+.
T Consensus 15 ~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 91 (136)
T 1d9s_A 15 GLATAAARGQVETVRQLLEAGADPNA--LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91 (136)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCH
Confidence 47777777778888888889999999 99999999999999 9999999999999999999999 99999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 528 KMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++
T Consensus 92 ~~v~~Ll~~ga~~~------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 92 DTLVVLHRAGARLD------VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCCCCC------CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999765 8899999999999999999999999999974
No 55
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.86 E-value=1.1e-21 Score=190.04 Aligned_cols=149 Identities=21% Similarity=0.131 Sum_probs=131.9
Q ss_pred cchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcC
Q 044976 417 ELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLG 492 (846)
Q Consensus 417 ~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G 492 (846)
.++++.|+..|..++++.++...+.+++..+. .|+. +..+..+++..|+..|++++. .|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV--QDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcC
Confidence 35678888888888888888764445555544 4777 677778899999999999999 9999999999999999
Q ss_pred ChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 044976 493 FEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYL 572 (846)
Q Consensus 493 ~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~L 572 (846)
+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|++. +++ +.+|..|.||||+|+..|+.+++++|
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~------~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL------HRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT------TCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC------CCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998 754 48899999999999999999999999
Q ss_pred HHc
Q 044976 573 SEV 575 (846)
Q Consensus 573 l~~ 575 (846)
+++
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 874
No 56
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=2.9e-21 Score=183.59 Aligned_cols=123 Identities=22% Similarity=0.247 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q 044976 446 IDWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFG 525 (846)
Q Consensus 446 ~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G 525 (846)
....++.|+..+..++++.|+..|++++. .|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 44568999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVA 576 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~G 576 (846)
+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++.|
T Consensus 92 ~~~~v~~Ll~~g~~~~------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVN------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCc------CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999765 88999999999999999999999999986
No 57
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.86 E-value=7.1e-21 Score=196.11 Aligned_cols=185 Identities=15% Similarity=0.066 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhh-----hhHHHHHHHHhcHHHH
Q 044976 387 DELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDT-----IDWLLQEVLKDKLQQW 461 (846)
Q Consensus 387 ~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~-----~d~~L~~Al~~~~~~~ 461 (846)
+...++.++++.|+..+. +.+..+..+.++++.|+..+..++++.|+..+. +++. ....|+.|+..+..++
T Consensus 16 A~~~g~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~ 91 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGY---DVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTPLHWATRQGHLSM 91 (240)
T ss_dssp HHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBCHHHHHHHHTCHHH
T ss_pred HHHcCChHHHHHHHHcCC---CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCChhHHHHHcCCHHH
Confidence 444557789999998876 455566778899999999999999999988543 3332 2346999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCC
Q 044976 462 LSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR-EKMVAALLASGASA 540 (846)
Q Consensus 462 l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~-~eiV~~LL~~GA~v 540 (846)
++.|++.|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+ .+++++|++.|+++
T Consensus 92 v~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 92 VVQLMKYGADPSL--IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169 (240)
T ss_dssp HHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred HHHHHHcCCCCcc--cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence 9999999999999 99999999999999999999999999999999999999999999997776 89999999999987
Q ss_pred CCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 541 GAVTDPNPLDP-TGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 541 ~~~~D~~~~d~-~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+ ..+. .|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 170 ~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 207 (240)
T 3eu9_A 170 N------LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207 (240)
T ss_dssp T------CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred c------hhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 6 6666 89999999999999999999999998765443
No 58
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.86 E-value=3.3e-21 Score=186.74 Aligned_cols=146 Identities=20% Similarity=0.205 Sum_probs=124.9
Q ss_pred chhchhhhcCcHHHHHHHHccCCCChhh---hhHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCCh
Q 044976 418 LRGMKADDDLWGQVIDSLLVGSGNSLDT---IDWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFE 494 (846)
Q Consensus 418 ~~l~~aa~~g~~~~i~~ll~~~~~~~~~---~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~ 494 (846)
++++.|+..|..++++.++..+. +.+. ....|+.|+..+..+++..|+..|++++. .|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTC-CCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcChH
Confidence 46677777888888887776432 2221 12358888888888899999999999998 899999999999999999
Q ss_pred hhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 044976 495 WALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYL 572 (846)
Q Consensus 495 ~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~L 572 (846)
+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH------TQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999765 7889999999999999999999887
No 59
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.86 E-value=1.6e-21 Score=209.24 Aligned_cols=185 Identities=17% Similarity=0.046 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHH
Q 044976 387 DELLLLVRFVQMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWL 462 (846)
Q Consensus 387 ~~~~l~~rlv~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l 462 (846)
+...++.++++.|+..+. +.+..+..+.++++.|+..|..++++.|+. .+++++..+. .||.|+..+..+++
T Consensus 47 A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~g~~~~v 122 (299)
T 1s70_B 47 ACSSGDTEEVLRLLERGA---DINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIA 122 (299)
T ss_dssp HHHHTCHHHHHHHHHHCC---CTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHH
Confidence 455567889999998876 455667778999999999999999999987 5777777655 59999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHh-CCCCCc--------------------------ccCCCCC
Q 044976 463 SSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILS-CGVSIN--------------------------FRDINGW 515 (846)
Q Consensus 463 ~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~-~Gadin--------------------------~~D~~G~ 515 (846)
..|+..|++++. .|..|.||||+|+..|+.++++.|+. .|++++ ..+..|.
T Consensus 123 ~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 200 (299)
T 1s70_B 123 EYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG 200 (299)
T ss_dssp HHHHHTTCCTTC--CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred HHHHhCCCCCCC--cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCC
Confidence 999999999999 99999999999999999999987664 355544 3567899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 516 TALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 516 TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||||+|+..|+.++|++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..|
T Consensus 201 t~L~~A~~~g~~~~v~~Ll~~g~d~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d 262 (299)
T 1s70_B 201 TALHVAAAKGYTEVLKLLIQARYDVN------IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHCCcHHHHHHHHHcCCCCC------CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999765 889999999999999999999999999998765544
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.86 E-value=8.6e-21 Score=187.08 Aligned_cols=130 Identities=24% Similarity=0.236 Sum_probs=121.9
Q ss_pred hhHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q 044976 446 IDWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFG 525 (846)
Q Consensus 446 ~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G 525 (846)
....++.|+..+..++++.|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34568999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 92 ~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 143 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVN------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143 (169)
T ss_dssp CHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 9999999999999765 889999999999999999999999999998655443
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.85 E-value=7e-22 Score=207.98 Aligned_cols=163 Identities=16% Similarity=0.079 Sum_probs=139.6
Q ss_pred ccCcchhchhh---hcCcHHHHHHHHccCC----------CChh----hhhHHHHHHHHhcHHHHHHHHhhCCCCCCCCC
Q 044976 414 GYHELRGMKAD---DDLWGQVIDSLLVGSG----------NSLD----TIDWLLQEVLKDKLQQWLSSKSLRESDQPGCS 476 (846)
Q Consensus 414 ~~~~~~l~~aa---~~g~~~~i~~ll~~~~----------~~~~----~~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~ 476 (846)
..+.++++.|+ ..|..++++.|+..+. ...+ .....||.|+..+..++++.|+..|++++.
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-- 121 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-- 121 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc--
Confidence 56888999888 6788888888886421 1111 223469999999999999999999999999
Q ss_pred CC--------------CCCCcHHHHHHHcCChhhHHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHH
Q 044976 477 LS--------------KKEQGIIHMVAGLGFEWALNPILS---CGVSINFRDINGWTALHWAARFGR---------EKMV 530 (846)
Q Consensus 477 ~d--------------~~G~T~LH~Aa~~G~~~iv~~LL~---~Gadin~~D~~G~TpLh~Aa~~G~---------~eiV 530 (846)
.| ..|.||||+|+..|+.++|++|++ .|+++|.+|..|+||||+|+..|+ .++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v 201 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence 87 689999999999999999999999 999999999999999999999888 7999
Q ss_pred HHHHHcCCCCCCCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 531 AALLASGASAGAVT-DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 531 ~~LL~~GA~v~~~~-D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
++|+++|++++... ..+.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999874100 0157899999999999999999999999999853
No 62
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.85 E-value=6.1e-22 Score=207.08 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=119.0
Q ss_pred cCcchhchhhhcCcHHHHHHHHccCCCChhhh---hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHc
Q 044976 415 YHELRGMKADDDLWGQVIDSLLVGSGNSLDTI---DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGL 491 (846)
Q Consensus 415 ~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~---d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~ 491 (846)
.+.++++.|+..+....++.++. +|.+++.. ...|+.|+..+..+++..|+..|+++|. .|..|.||||+||..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIA-HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCA 80 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC--CCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhc-cCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHc
Confidence 46778888888888888887776 55555543 2459999999999999999999999999 999999999999999
Q ss_pred CChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCC-cHHHHH--HHcCcHHH
Q 044976 492 GFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGR-TPAFIA--ASSGHKGL 568 (846)
Q Consensus 492 G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~-TPL~lA--~~~G~~~i 568 (846)
|+.+++++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++ ..|..|. ||||+| +..|+.++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~~~~t~l~~a~~~~~g~~~~ 154 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF------AMTYSDMQTAADKCEEMEEGYTQC 154 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------eecCCCCcchHHHHHHhhhccHHH
Confidence 99999999999999999999999999999999999999999999999866 7777776 999999 88899999
Q ss_pred HHHHHHcCCCCCCC
Q 044976 569 AGYLSEVALTSHLS 582 (846)
Q Consensus 569 v~~Ll~~Ga~~~~~ 582 (846)
+++|+++|++.+..
T Consensus 155 ~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 155 SQFLYGVQEKMGIM 168 (239)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHhhhccccc
Confidence 99999999876554
No 63
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.85 E-value=8.3e-22 Score=204.55 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=141.8
Q ss_pred ccccCcchhchhhhcCcHHHHHHHHccCC---CChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcH
Q 044976 412 ELGYHELRGMKADDDLWGQVIDSLLVGSG---NSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGI 484 (846)
Q Consensus 412 ~~~~~~~~l~~aa~~g~~~~i~~ll~~~~---~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~ 484 (846)
.+..+.++++.|+..|..++++.|+.... .+++..+. .|+.|+..+..+++..|+..|++++. .|..|.||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~ 81 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTP 81 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC--CCTTCCCH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCH
Confidence 35567899999999998888877765432 24555443 69999999999999999999999999 99999999
Q ss_pred HHHHHHcCChhhHHHHHhCCCC------CcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCC-CCCcHH
Q 044976 485 IHMVAGLGFEWALNPILSCGVS------INFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDP-TGRTPA 557 (846)
Q Consensus 485 LH~Aa~~G~~~iv~~LL~~Gad------in~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~-~G~TPL 557 (846)
||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..|+.++|++|++.|++++ .+|. .|.|||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~g~tpL 155 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN------AQEPCNGRTAL 155 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT------CCCTTTCCCHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCCCHH
Confidence 9999999999999999999976 57788999999999999999999999999999766 7777 999999
Q ss_pred HHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 558 FIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 558 ~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|+|+..|+.+++++|+++|++.+..+
T Consensus 156 ~~A~~~~~~~~v~~Ll~~ga~~~~~~ 181 (236)
T 1ikn_D 156 HLAVDLQNPDLVSLLLKCGADVNRVT 181 (236)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccc
Confidence 99999999999999999998776554
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.85 E-value=6.2e-21 Score=185.78 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=132.8
Q ss_pred hhHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q 044976 446 IDWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFG 525 (846)
Q Consensus 446 ~d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G 525 (846)
....|+.|+..+..+.++.|++.|++++. .|..|.||||+|+. |+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTC--CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccc--cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34568999999999999999999999999 99999999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhc
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVN 605 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 605 (846)
+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++ ++..+.. +.++...+...
T Consensus 82 ~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~~--g~t~l~~A~~~-- 147 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN----VGHRNHK--GDTACDLARLY-- 147 (162)
T ss_dssp CHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC----TTCCCTT--SCCHHHHHHHT--
T ss_pred CHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC----CCCcCCC--CCcHHHHHHHc--
Confidence 9999999999999765 88999999999999999999999999999853 2233332 33443333322
Q ss_pred ccccccCCCCccccchhhhhhh
Q 044976 606 SISNGNISSTEDQLSLKDTLAA 627 (846)
Q Consensus 606 ~~~~~~~~~~~d~~~l~~sl~A 627 (846)
+..+.+.++...||
T Consensus 148 --------~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 148 --------GRNEVVSLMQANGA 161 (162)
T ss_dssp --------TCHHHHHHHHHTC-
T ss_pred --------CCHHHHHHHHHhCC
Confidence 45566666666654
No 65
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.85 E-value=1.4e-21 Score=190.42 Aligned_cols=129 Identities=22% Similarity=0.165 Sum_probs=115.2
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCc-HHHHHHHcC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWT-ALHWAARFG 525 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~T-pLh~Aa~~G 525 (846)
...|+.|+..+..++++.|+..|++++. .|..|.||||+|+ .|+.+++++|++.|+++|.+|..|+| |||+|+..|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~ 89 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG 89 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence 4468889999999999999999999999 9999999999986 99999999999999999999999999 999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSL 584 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~ 584 (846)
+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..+.
T Consensus 90 ~~~~v~~Ll~~ga~~~------~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 142 (156)
T 1bi7_B 90 FLDTLVVLHRAGARLD------VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142 (156)
T ss_dssp CHHHHHHHHHHTCCSS------CCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred CHHHHHHHHHcCCCCc------ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence 9999999999999765 8899999999999999999999999999987766553
No 66
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.84 E-value=2.1e-21 Score=213.05 Aligned_cols=160 Identities=15% Similarity=0.055 Sum_probs=120.5
Q ss_pred chhhhcCcHHHHHHHHccCCCChhh-hhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCC--
Q 044976 421 MKADDDLWGQVIDSLLVGSGNSLDT-IDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGF-- 493 (846)
Q Consensus 421 ~~aa~~g~~~~i~~ll~~~~~~~~~-~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~-- 493 (846)
+.+...+...+++.++ ..+.++|. .+. .||.|+..+..++++.|++.|++++. +|..|.||||+|+..|+
T Consensus 102 ~~a~~~~~~~~~~~l~-~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~--~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFP-NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY--GDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp --CHHHHHHHHHHHCT-TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB--CCTTCCCHHHHHHHSSHHH
T ss_pred HHHHHhhHHHHHHHHH-hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHhcccc
Confidence 4444455555554444 45666666 444 48888888888888888888888888 88888888888888888
Q ss_pred -hhhHHHHHhCC-CCCcccCCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCC---
Q 044976 494 -EWALNPILSCG-VSINFRDINGWTALHWAAR----FGREKMVAALLAS--------------------GASAGAVT--- 544 (846)
Q Consensus 494 -~~iv~~LL~~G-adin~~D~~G~TpLh~Aa~----~G~~eiV~~LL~~--------------------GA~v~~~~--- 544 (846)
.++++.|++.+ ++++.+|..|+||||+|+. .|+.++|++|++. |++++...
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67888888776 6788888888888888888 8888888888877 55554321
Q ss_pred ----------------CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 545 ----------------DPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 545 ----------------D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|++.+|..|+||||+|+..|+.++|++|+++|++++..|
T Consensus 259 ~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp -CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred CChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 467899999999999999999999999999998766554
No 67
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.84 E-value=1.4e-21 Score=205.43 Aligned_cols=196 Identities=11% Similarity=0.008 Sum_probs=153.8
Q ss_pred CcchhchhhhcCcHH----HHHHHHccCCCChhh----hhH----HHHHHHHh---cHHHHHHHHhhCCCCCCCCC----
Q 044976 416 HELRGMKADDDLWGQ----VIDSLLVGSGNSLDT----IDW----LLQEVLKD---KLQQWLSSKSLRESDQPGCS---- 476 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~----~i~~ll~~~~~~~~~----~d~----~L~~Al~~---~~~~~l~~ll~~Gad~n~~~---- 476 (846)
+.++++.|+..|..+ +++.++. .+.+++. .+. .||.|+.. +..++++.|+..|++++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 467889999988886 4444443 4556665 333 59999998 88999999999998877410
Q ss_pred -----CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCC-------------CCcHHHHHHHcCCHHHHHHHHH---
Q 044976 477 -----LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDIN-------------GWTALHWAARFGREKMVAALLA--- 535 (846)
Q Consensus 477 -----~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~-------------G~TpLh~Aa~~G~~eiV~~LL~--- 535 (846)
.|..|.||||+|+..|+.+++++|++.|+++|.+|.. |+||||+|+..|+.++|++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 3478999999999999999999999999999999986 9999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHcCCCCCCCCC--ccccccccCCchhHHHhhhh
Q 044976 536 SGASAGAVTDPNPLDPTGRTPAFIAAS--SGHKG-------LAGYLSEVALTSHLSSL--TLEESELSKNSAEVQAEITV 604 (846)
Q Consensus 536 ~GA~v~~~~D~~~~d~~G~TPL~lA~~--~G~~~-------iv~~Ll~~Ga~~~~~d~--~l~~~~~~~~~~~~~~~~~~ 604 (846)
.|++++ .+|..|+||||+|+. .++.+ ++++|+++|++.+.... +..+.. +.++...+...
T Consensus 161 ~ga~~n------~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~--g~tpL~~A~~~- 231 (256)
T 2etb_A 161 QPASLE------ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ--GLTPLKLAAKE- 231 (256)
T ss_dssp CCCCTT------CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT--SCCHHHHHHHT-
T ss_pred cCCCcC------ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC--CCCHHHHHHHh-
Confidence 999765 889999999999999 88888 99999999986632111 333333 44444444333
Q ss_pred cccccccCCCCccccchhhhhhhHhh
Q 044976 605 NSISNGNISSTEDQLSLKDTLAAVRN 630 (846)
Q Consensus 605 ~~~~~~~~~~~~d~~~l~~sl~A~rn 630 (846)
+..+.+.++.+.++...
T Consensus 232 ---------g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 232 ---------GKIEIFRHILQREFSGA 248 (256)
T ss_dssp ---------TCHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHhCCCCCC
Confidence 55677777777775543
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.84 E-value=2.6e-20 Score=182.72 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=120.1
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
.|+.|+..+..+++..++..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 6 ~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 83 (167)
T 3v31_A 6 SVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83 (167)
T ss_dssp CHHHHHHTTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred hHHHHHHCCCHHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 48899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 529 MVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 529 iV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+|++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 84 ~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 132 (167)
T 3v31_A 84 IVKMLLDCGVDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132 (167)
T ss_dssp HHHHHHHHTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHCCCCCC------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 9999999999765 889999999999999999999999999998665543
No 69
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.9e-20 Score=173.43 Aligned_cols=122 Identities=29% Similarity=0.350 Sum_probs=115.9
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
.|+.|+..+..+++..|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 5 ~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 82 (126)
T 1n0r_A 5 PLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82 (126)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHH
Confidence 57888888888999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 529 MVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 529 iV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++
T Consensus 83 ~~~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 83 VVKLLLEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCCc------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999765 8899999999999999999999999999974
No 70
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.84 E-value=1e-21 Score=215.37 Aligned_cols=234 Identities=16% Similarity=0.015 Sum_probs=161.5
Q ss_pred CCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCcccceeeeeeeccCC
Q 044976 292 WGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESCSEVKEFDYRVKP 371 (846)
Q Consensus 292 w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~sev~~Fey~~~~ 371 (846)
+-..+.|.+|........ ++..|+.++++.|++.|+. ++.+++++|+.+... .. . .
T Consensus 36 ~~ll~~ga~i~~~~~~g~-------~~~~g~~~~v~~Ll~~g~~--------~~~~~~~~a~~~~~~---~~-----~-~ 91 (327)
T 1sw6_A 36 SDFLSSPLKIMKALPSPV-------VNDNEQKMKLEAFLQRLLF--------PEIQEMPTSLNNDSS---NR-----N-S 91 (327)
T ss_dssp CSTTTSSCCCEECBCCCC-------CCCHHHHHHHHHHHHHHHC------------------------------------
T ss_pred HHHhhCCcccccCCCCCC-------cccCchhHHHHHHHHhccC--------CccccchHhhhcccc---cc-----c-c
Confidence 445666777766654332 2355999999999999975 233566666654100 00 0 0
Q ss_pred CCCCCccccccCCCHHHHHHHHHHHHHHhcCCCCCCCCCc-ccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH--
Q 044976 372 NSYDNWSQKEATKSHDELLLLVRFVQMLLSDSSVNKEEGV-ELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW-- 448 (846)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~rlv~lLl~~~~~~~~~~~-~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~-- 448 (846)
+.. .........+.......++++|+..+. +.+. .+..+.+|++.|+..|+.++++.|+. .|++++..+.
T Consensus 92 ~~~---~~~~~~~~~a~~~~~~~~~~~l~~~g~---dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~g 164 (327)
T 1sw6_A 92 EGG---SSNQQQQHVSFDSLLQEVNDAFPNTQL---NLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMG 164 (327)
T ss_dssp ---------------CHHHHHHHHHHHCTTSCC---CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTC
T ss_pred ccc---CCccchhHHHHHhhHHHHHHHHHhcCC---CcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCC
Confidence 000 000011123344567788888888776 4555 67788999999999999999988887 5678877765
Q ss_pred --HHHHHHHhcH---HHHHHHHhhCC-CCCCCCCCCCCCCcHHHHHHH----cCChhhHHHHHhCCC-------------
Q 044976 449 --LLQEVLKDKL---QQWLSSKSLRE-SDQPGCSLSKKEQGIIHMVAG----LGFEWALNPILSCGV------------- 505 (846)
Q Consensus 449 --~L~~Al~~~~---~~~l~~ll~~G-ad~n~~~~d~~G~T~LH~Aa~----~G~~~iv~~LL~~Ga------------- 505 (846)
.||.|+..+. .+.+..++..+ ++++. .|..|.||||+|+. .|+.+++++|++.++
T Consensus 165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~--~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL--EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242 (327)
T ss_dssp CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred CCHHHHHHHhcccccHHHHHHHHHhhhccccC--CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence 5888888766 34445555554 57777 89999999999998 899999999987643
Q ss_pred --------------------------------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 044976 506 --------------------------------SINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTG 553 (846)
Q Consensus 506 --------------------------------din~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G 553 (846)
++|.+|..|+||||+||..|+.++|++||++||+++ .+|..|
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~------~~d~~G 316 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF------IANKSG 316 (327)
T ss_dssp C----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT------CCCTTS
T ss_pred hhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCC
Confidence 688899999999999999999999999999999765 899999
Q ss_pred CcHHHHHHHcC
Q 044976 554 RTPAFIAASSG 564 (846)
Q Consensus 554 ~TPL~lA~~~G 564 (846)
+||||+|+.+|
T Consensus 317 ~TpL~~A~~~g 327 (327)
T 1sw6_A 317 LRPVDFGAGLE 327 (327)
T ss_dssp CCGGGGTCC--
T ss_pred CCHHHHHHhcC
Confidence 99999998765
No 71
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.83 E-value=2.4e-20 Score=187.49 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=121.1
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR 526 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~ 526 (846)
...|+.|+..+..+++..|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 113 (192)
T 2rfm_A 36 RTPLMVACMLGMENAIDKLVENFDKLED--KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113 (192)
T ss_dssp CCHHHHHHHHTCGGGHHHHHHHHCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcccccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3469999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 527 EKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 527 ~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 114 ~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 164 (192)
T 2rfm_A 114 SEMSYFLLEHGANVN------DRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164 (192)
T ss_dssp HHHHHHHHHTTCCSS------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred HHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 999999999999765 889999999999999999999999999998665443
No 72
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.83 E-value=4.4e-20 Score=181.92 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=131.5
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCC-CCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESD-QPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGRE 527 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad-~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~ 527 (846)
.|+.|+..+..+.+..++..|.+ ++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 5 SIHQLAAQGELDQLKEHLRKGDNLVNK--PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp CHHHHHHTTCHHHHHHHHTTCSGGGGC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hHHHHHHcCCHHHHHHHHHcCcccccC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 37889999999999999999887 677 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhccc
Q 044976 528 KMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSI 607 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~ 607 (846)
++|++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..+ .. +.++...+...
T Consensus 83 ~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-----~~--g~t~l~~A~~~---- 145 (172)
T 3v30_A 83 DIVGLLLERDVDIN------IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA-----DS--GYTPMDLAVAL---- 145 (172)
T ss_dssp HHHHHHHTTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----TT--SCCHHHHHHHH----
T ss_pred HHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-----CC--CCCHHHHHHHh----
Confidence 99999999999765 889999999999999999999999999998655443 22 33443333332
Q ss_pred ccccCCCCccccchhhhhhhH
Q 044976 608 SNGNISSTEDQLSLKDTLAAV 628 (846)
Q Consensus 608 ~~~~~~~~~d~~~l~~sl~A~ 628 (846)
+..+.+.++...++.
T Consensus 146 ------~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 146 ------GYRKVQQVIENHILK 160 (172)
T ss_dssp ------TCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHH
Confidence 345666666665543
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.83 E-value=4.9e-20 Score=178.41 Aligned_cols=128 Identities=22% Similarity=0.172 Sum_probs=118.5
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR 526 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~ 526 (846)
...|+.|+..+..+.++.|+..|++++ .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 346889999999999999999999875 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 527 EKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 527 ~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 80 ~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 130 (153)
T 1awc_B 80 ANIVEVLLKHGADVN------AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130 (153)
T ss_dssp HHHHHHHHTTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 999999999999765 889999999999999999999999999998665443
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.83 E-value=6.9e-20 Score=179.28 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=119.0
Q ss_pred hhHHHHHHHHhcHHHHHHHHhh-CCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHc
Q 044976 446 IDWLLQEVLKDKLQQWLSSKSL-RESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARF 524 (846)
Q Consensus 446 ~d~~L~~Al~~~~~~~l~~ll~-~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~ 524 (846)
.+..|+.|+..+..+.++.++. .+.+++. .+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRD--IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCC--TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcCCCCccc--cccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 4556899999999999999988 4556666 889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 525 GREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 525 G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|+.++|++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 86 ~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 138 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVN------VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138 (165)
T ss_dssp TCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CcHHHHHHHHhCCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 99999999999999765 889999999999999999999999999998765544
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.83 E-value=6.5e-20 Score=182.32 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=117.6
Q ss_pred HHHHHHhcHHHHHHHHhhC-CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 450 LQEVLKDKLQQWLSSKSLR-ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 450 L~~Al~~~~~~~l~~ll~~-Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
|+.|+..+..+.+..++.. +.+++. .|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 86 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD 86 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccc--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 7888888989999999988 667888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 529 MVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 529 iV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 87 ~v~~Ll~~g~~~~------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 135 (179)
T 3f6q_A 87 IVQKLLQYKADIN------AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135 (179)
T ss_dssp HHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred HHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence 9999999999765 889999999999999999999999999998765544
No 76
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.83 E-value=7.9e-21 Score=199.93 Aligned_cols=195 Identities=12% Similarity=0.007 Sum_probs=150.1
Q ss_pred cCcchhchhhhcCcHHHHHHHHc---cCCCChhhhh--------HHHHHHH---HhcHHHHHHHHhhCCCC---------
Q 044976 415 YHELRGMKADDDLWGQVIDSLLV---GSGNSLDTID--------WLLQEVL---KDKLQQWLSSKSLRESD--------- 471 (846)
Q Consensus 415 ~~~~~l~~aa~~g~~~~i~~ll~---~~~~~~~~~d--------~~L~~Al---~~~~~~~l~~ll~~Gad--------- 471 (846)
.+.++++.|+..|..+.++.++. ..+.+++..+ ..||.|+ ..+..+++..|+..|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 35677888888888885544443 3455555444 3589888 56778888888887754
Q ss_pred --CCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHH
Q 044976 472 --QPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRD--------------INGWTALHWAARFGREKMVAALLA 535 (846)
Q Consensus 472 --~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D--------------~~G~TpLh~Aa~~G~~eiV~~LL~ 535 (846)
++. .|..|.||||+||..|+.++|++|++.|+++|.+| ..|+||||+|+..|+.++|++|++
T Consensus 84 ~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 84 SPFRD--VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCBCC--SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccc--cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 334 66799999999999999999999999999999999 689999999999999999999999
Q ss_pred ---cCCCCCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCCCCC--CccccccccCCchhHHHh
Q 044976 536 ---SGASAGAVTDPNPLDPTGRTPAFIAASSGH---------KGLAGYLSEVALTSHLSS--LTLEESELSKNSAEVQAE 601 (846)
Q Consensus 536 ---~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~---------~~iv~~Ll~~Ga~~~~~d--~~l~~~~~~~~~~~~~~~ 601 (846)
.|++++ .+|..|+||||+|+..|+ .+++++|+++|++.+... .+..+.. +.++...+.
T Consensus 162 ~~~~ga~~~------~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~--g~tpL~~A~ 233 (260)
T 3jxi_A 162 NGHKQADLR------RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND--GLSPLMMAA 233 (260)
T ss_dssp CSSCCCCTT------CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT--SCCHHHHHH
T ss_pred ccccCCCCc------ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC--CCCHHHHHH
Confidence 889765 889999999999999887 799999999998663311 1333333 444444444
Q ss_pred hhhcccccccCCCCccccchhhhhhhHh
Q 044976 602 ITVNSISNGNISSTEDQLSLKDTLAAVR 629 (846)
Q Consensus 602 ~~~~~~~~~~~~~~~d~~~l~~sl~A~r 629 (846)
.. +..+.+.++.+-++..
T Consensus 234 ~~----------g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 234 KT----------GKIGIFQHIIRREIAD 251 (260)
T ss_dssp HT----------TCHHHHHHHHHHHHHH
T ss_pred Hc----------CCHHHHHHHHHhCCCc
Confidence 33 5567777777766544
No 77
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=3.4e-20 Score=164.45 Aligned_cols=93 Identities=34% Similarity=0.476 Sum_probs=88.2
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHH
Q 044976 480 KEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFI 559 (846)
Q Consensus 480 ~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~l 559 (846)
+|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|++.|++++ .+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999765 889999999999
Q ss_pred HHHcCcHHHHHHHHHcCCC
Q 044976 560 AASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 560 A~~~G~~~iv~~Ll~~Ga~ 578 (846)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999974
No 78
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=7.6e-21 Score=192.01 Aligned_cols=153 Identities=10% Similarity=-0.101 Sum_probs=130.4
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChh-h-hhHHHHHHHHhcH----HHHHHHHhhCCCCCCCCCCCCCCCcHHHHHH
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLD-T-IDWLLQEVLKDKL----QQWLSSKSLRESDQPGCSLSKKEQGIIHMVA 489 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~-~-~d~~L~~Al~~~~----~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa 489 (846)
+.++++.|+..|..+.+..++.......+ . ....||.|+.++. .+++..|+..|+++|. +|..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC--CCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH
Confidence 34677888888988888888775543332 1 2235899888764 4689999999999999 9999999999999
Q ss_pred HcCC------hhhHHHHHhCCCCCcccCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcH
Q 044976 490 GLGF------EWALNPILSCGVSINFRDINGW-TALHWAARFG-----REKMVAALLA-SGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 490 ~~G~------~~iv~~LL~~Gadin~~D~~G~-TpLh~Aa~~G-----~~eiV~~LL~-~GA~v~~~~D~~~~d~~G~TP 556 (846)
..|+ .+++++|+++|+|+|.+|..|+ ||||+|+..| +.+++++|++ +|++++ .+|..|.||
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~------~~d~~G~Tp 157 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL------IKDKWGLTA 157 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT------CCCTTSCCH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc------ccCCCCCCH
Confidence 9997 4689999999999999999999 9999999954 4579999999 999765 899999999
Q ss_pred HHHHHHcCcHHHHHHHHHcC
Q 044976 557 AFIAASSGHKGLAGYLSEVA 576 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~G 576 (846)
||+|+..|+.+++++|++..
T Consensus 158 L~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999765
No 79
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.82 E-value=1.5e-20 Score=199.72 Aligned_cols=200 Identities=14% Similarity=0.008 Sum_probs=153.7
Q ss_pred CcccccCcchhchhhhcCcHHHHHHHHc---cCCCChh--------hhhHHHHHHHHh---cHHHHHHHHhhCCCCC---
Q 044976 410 GVELGYHELRGMKADDDLWGQVIDSLLV---GSGNSLD--------TIDWLLQEVLKD---KLQQWLSSKSLRESDQ--- 472 (846)
Q Consensus 410 ~~~~~~~~~~l~~aa~~g~~~~i~~ll~---~~~~~~~--------~~d~~L~~Al~~---~~~~~l~~ll~~Gad~--- 472 (846)
...+..+.++++.|+..|..++++.|+. ..+.+++ .....|+.|+.. +..++++.|+..|++.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3456678899999999999887777665 2343332 223369999976 7888999999887652
Q ss_pred ----CC--CCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCC--------------CCCcHHHHHHHcCCHHHHHH
Q 044976 473 ----PG--CSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDI--------------NGWTALHWAARFGREKMVAA 532 (846)
Q Consensus 473 ----n~--~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~--------------~G~TpLh~Aa~~G~~eiV~~ 532 (846)
+. ...|..|.||||+|+..|+.++|++|+++|+++|.+|. .|+||||+|+..|+.++|++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 21 11567899999999999999999999999999999997 79999999999999999999
Q ss_pred HHH---cCCCCCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCCCCC--CccccccccCCchhH
Q 044976 533 LLA---SGASAGAVTDPNPLDPTGRTPAFIAASSGH---------KGLAGYLSEVALTSHLSS--LTLEESELSKNSAEV 598 (846)
Q Consensus 533 LL~---~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~---------~~iv~~Ll~~Ga~~~~~d--~~l~~~~~~~~~~~~ 598 (846)
|++ .|++++ .+|..|+||||+|+..|+ .+++++|+++|++.+... .+..+.. +.++..
T Consensus 167 Ll~~~~~gad~~------~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~--g~TpL~ 238 (273)
T 2pnn_A 167 LLQNSWQPADIS------ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK--GLTPLA 238 (273)
T ss_dssp HHHCSSCCCCTT------CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT--SCCHHH
T ss_pred HHhcccCCCCce------eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC--CCCHHH
Confidence 999 899765 889999999999999998 899999999998665311 1223332 444444
Q ss_pred HHhhhhcccccccCCCCccccchhhhhhh
Q 044976 599 QAEITVNSISNGNISSTEDQLSLKDTLAA 627 (846)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~d~~~l~~sl~A 627 (846)
.+... ++.+.+.++...||
T Consensus 239 ~A~~~----------g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 239 LAASS----------GKIGVLAYILQREI 257 (273)
T ss_dssp HHHHT----------TCHHHHHHHHHHHT
T ss_pred HHHHh----------ChHHHHHHHHHCCC
Confidence 44333 55678888888776
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=193.39 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=118.2
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGRE 527 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~ 527 (846)
..|+.|+..+..++++.|+..|++++. .|..|.||||+||..|+.++|++|++.|+++|.+|..|+||||+|+..|+.
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~ 100 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 357788888888888888999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHHcCCCCCCCC
Q 044976 528 KMVAALLASGASAGAVTDPNPLD-PTGRTPAFIA--ASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d-~~G~TPL~lA--~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
++|++|++.|++++ ..+ ..|.||||+| +..|+.+++++|+++|++.+..+
T Consensus 101 ~~v~~Ll~~ga~~~------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~ 153 (229)
T 2vge_A 101 VICMALVQHGAAIF------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153 (229)
T ss_dssp HHHHHHHTTTCCTT------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred HHHHHHHHcCCCcc------cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence 99999999999876 665 6999999999 99999999999999998766654
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.80 E-value=3.5e-19 Score=172.39 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=114.9
Q ss_pred hHHHHHHHHhcHHHHHHHHhhC-CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLR-ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFG 525 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~-Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G 525 (846)
+..|+.|+..+..+.++.++.. +.+++. .|..|.||||+ |..|+.+++++|++.|+++|.+|..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTC--CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccc--cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 3568899999999999999988 448888 99999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHL 581 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~ 581 (846)
+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++ ++.+.
T Consensus 80 ~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVN------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp CHHHHHHHHHTTCCSC------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred cHHHHHHHHHcCCCCC------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 9999999999999765 8899999999999999999999999998 54443
No 82
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.80 E-value=9.3e-20 Score=169.93 Aligned_cols=113 Identities=23% Similarity=0.121 Sum_probs=101.3
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR 526 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~ 526 (846)
+..|+.|+..+..+.++.++..|++++. .|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+
T Consensus 8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 8 DKEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 4568888888889999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 044976 527 EKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKG 567 (846)
Q Consensus 527 ~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~ 567 (846)
.++|++|+++|++++ .+|..|.||||+|+..+..+
T Consensus 86 ~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 86 VSCVKLLLSKGADKT------VKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHHHHHTTCCTT------CCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHHHHHHcCCCCC------CcCCCCCCHHHHhCCHHHHH
Confidence 999999999999755 88999999999995444433
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.80 E-value=1.3e-19 Score=189.22 Aligned_cols=160 Identities=16% Similarity=0.045 Sum_probs=108.1
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGRE 527 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~ 527 (846)
..|+.|+..+..+.+..|+..|++++. +..|.||||+|+..|+.++|++|++.|+++|.+|..|+||||+||..|+.
T Consensus 7 t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ 83 (239)
T 1ycs_B 7 VSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred ccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 457888888999999999999999986 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCC-chhHHHhhhhcc
Q 044976 528 KMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKN-SAEVQAEITVNS 606 (846)
Q Consensus 528 eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~-~~~~~~~~~~~~ 606 (846)
++|++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++.+..+.. ++ ++...+ .
T Consensus 84 ~~v~~Ll~~ga~~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-------~~~t~l~~a-~---- 145 (239)
T 1ycs_B 84 EIVKFLVQFGVNVN------AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS-------DMQTAADKC-E---- 145 (239)
T ss_dssp HHHHHHHHHTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS-------SCCCHHHHC-C----
T ss_pred HHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC-------CCcchHHHH-H----
Confidence 99999999999766 88999999999999999999999999999876554422 22 232211 0
Q ss_pred cccccCCCCccccchhhhhhhHhhh
Q 044976 607 ISNGNISSTEDQLSLKDTLAAVRNA 631 (846)
Q Consensus 607 ~~~~~~~~~~d~~~l~~sl~A~rna 631 (846)
....+..+.+.++...++..+.
T Consensus 146 ---~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 146 ---EMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp ---SSSTTCCCHHHHHHHHHHHTTT
T ss_pred ---HhhhccHHHHHHHHHhhhcccc
Confidence 0112567777787777766554
No 84
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=8.7e-20 Score=187.86 Aligned_cols=128 Identities=22% Similarity=0.168 Sum_probs=109.8
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhC-CCCCcccCCCCCcHHHHHHHcCC
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSC-GVSINFRDINGWTALHWAARFGR 526 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~-Gadin~~D~~G~TpLh~Aa~~G~ 526 (846)
..|+.|+..+..+++..|+..|++++. .|..|.||||+||..|+.++|++|++. |+++|.+|..|+||||+|+..|+
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~ 152 (222)
T 3ehr_A 75 NPLHEAAKRGNLSWLRECLDNRVGVNG--LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccccccCcHHHHHHHHhCCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence 358888888889999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 527 EKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 527 ~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
.++|++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|+...+.+
T Consensus 153 ~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 153 ADIVQLLLAKGARTD------LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHHHHHHHTCCSC------CCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred HHHHHHHHHcCCCCc------cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence 999999999999765 899999999999999999999999999998766554
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.79 E-value=2e-19 Score=170.86 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP 548 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~ 548 (846)
+++++. .|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+. |+.++|++|+++|++++ .
T Consensus 2 ~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~------~ 72 (136)
T 1d9s_A 2 SPGIHM--LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN------C 72 (136)
T ss_dssp CCCCSC--CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS------C
T ss_pred CCCccC--CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC------C
Confidence 567888 99999999999999999999999999999999999999999999999 99999999999999765 8
Q ss_pred CCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCCccccchhhhhhh
Q 044976 549 LDPT-GRTPAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDTLAA 627 (846)
Q Consensus 549 ~d~~-G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~A 627 (846)
+|.. |.||||+|+..|+.+++++|+++|++.+..+ .. +.++...+... +..+.+.++...||
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d-----~~--g~tpl~~A~~~----------~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD-----AW--GRLPVDLAEEQ----------GHRDIARYLHAATG 135 (136)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS-----SS--SSCHHHHHHHH----------TCHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-----CC--CCCHHHHHHHc----------CCHHHHHHHHHcCC
Confidence 8888 9999999999999999999999998665543 22 34444444332 34566666666554
No 86
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=6e-20 Score=174.41 Aligned_cols=118 Identities=19% Similarity=0.086 Sum_probs=60.5
Q ss_pred HHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHH
Q 044976 450 LQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKM 529 (846)
Q Consensus 450 L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~ei 529 (846)
||.|+..+..+++..|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus 14 L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 91 (137)
T 3c5r_A 14 LHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91 (137)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence 4444444444444444455555555 55555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 044976 530 VAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEV 575 (846)
Q Consensus 530 V~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~ 575 (846)
|++|+++|++++ .+|..|.||||+|+..++.+++.+|.+.
T Consensus 92 v~~Ll~~ga~~~------~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 92 VKLLLSYGASRN------AVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHHHTTCCTT------CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHHHcCCCCC------CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 555555555433 4555555555555555555555544443
No 87
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.7e-19 Score=207.65 Aligned_cols=130 Identities=19% Similarity=0.177 Sum_probs=116.6
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCCC------CCCCCcHHHHHHH---cCChhhHHHHHhCCCCCcccCCCCCcHH
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCSL------SKKEQGIIHMVAG---LGFEWALNPILSCGVSINFRDINGWTAL 518 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~------d~~G~T~LH~Aa~---~G~~~iv~~LL~~Gadin~~D~~G~TpL 518 (846)
..|+.|+..+..+.+..|+..|+++|. . |..|.||||+||. .|+.++|++||++|+|+|.+|..|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~--~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQ--PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSS--CBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccC--CCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 459999999999999999999999987 6 8899999999966 8999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCc
Q 044976 519 HWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSSLT 585 (846)
Q Consensus 519 h~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~ 585 (846)
|+||..|+.++|++||++||+++ .+|..|.||||+|+..|+.+++++|+++|++.+...+.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVG------TVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCS------CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 99999999999999999999766 88999999999999999999999999999988775443
No 88
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.1e-21 Score=202.40 Aligned_cols=171 Identities=13% Similarity=0.009 Sum_probs=133.4
Q ss_pred HHHhcCCCCCCCCCcccccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCC
Q 044976 397 QMLLSDSSVNKEEGVELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQ 472 (846)
Q Consensus 397 ~lLl~~~~~~~~~~~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~ 472 (846)
+.|+..+.........+..+.++++.|+..|..++++.|+. .+++++..+. .|+.|+..+..+++..|+..|+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 44555555322233445567788999999999999999987 4567776655 599999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCCCCC-----
Q 044976 473 PGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRD-INGWTALHWA--ARFGREKMVAALLASGASAGAVT----- 544 (846)
Q Consensus 473 n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D-~~G~TpLh~A--a~~G~~eiV~~LL~~GA~v~~~~----- 544 (846)
|. .|..|.||||+|+..|+.+++++|++.|++++.+| ..|+||||+| +..|+.+++++|++.|++++...
T Consensus 81 n~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 81 NS--PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp TC--CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred CC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 99 99999999999999999999999999999999997 6999999999 99999999999999999876431
Q ss_pred ---------------------CCCCCCCCCCcHHHHHHHcCcHHHHH
Q 044976 545 ---------------------DPNPLDPTGRTPAFIAASSGHKGLAG 570 (846)
Q Consensus 545 ---------------------D~~~~d~~G~TPL~lA~~~G~~~iv~ 570 (846)
+++.+|..|+||||+|+..|+.++|+
T Consensus 159 ~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp ESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred HHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 13345555666666666666655554
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=5.7e-19 Score=167.59 Aligned_cols=106 Identities=24% Similarity=0.290 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 044976 469 ESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP 548 (846)
Q Consensus 469 Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~ 548 (846)
|+|+ . +|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++ .
T Consensus 1 G~d~-~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~ 71 (137)
T 3c5r_A 1 GIDP-F--TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN------T 71 (137)
T ss_dssp ---C-C--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------C
T ss_pred CCCC-C--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc------C
Confidence 5566 4 89999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 549 LDPTGRTPAFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 549 ~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 89999999999999999999999999998765544
No 90
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=6.9e-19 Score=188.92 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=113.6
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCC----CCCCCCCcHHHHHHHc---CChhhHHHHHhCCCCCcccCCCCCcHHHHH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGC----SLSKKEQGIIHMVAGL---GFEWALNPILSCGVSINFRDINGWTALHWA 521 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~----~~d~~G~T~LH~Aa~~---G~~~iv~~LL~~Gadin~~D~~G~TpLh~A 521 (846)
.|+.|+..+..+.+..++..|++++.. ..|..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|
T Consensus 133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A 212 (278)
T 1dcq_A 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHH
Confidence 477888888888888899999996531 1488999999999999 899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 522 ARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 522 a~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
+..|+.++|++||++||+++ .+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 213 ~~~g~~~~v~~Ll~~gad~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 213 CLTDNAECLKLLLRGKASIE------IANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCCC------CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999765 8899999999999999999999999999984
No 91
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=188.64 Aligned_cols=157 Identities=18% Similarity=0.071 Sum_probs=131.5
Q ss_pred hhchhhhcCcHHHHHHHHccC-CCChhh----hhHHHHHHHHhcHHHHHHHHhhCCC-CCCCCCCCCCCCcHHHHHH---
Q 044976 419 RGMKADDDLWGQVIDSLLVGS-GNSLDT----IDWLLQEVLKDKLQQWLSSKSLRES-DQPGCSLSKKEQGIIHMVA--- 489 (846)
Q Consensus 419 ~l~~aa~~g~~~~i~~ll~~~-~~~~~~----~d~~L~~Al~~~~~~~l~~ll~~Ga-d~n~~~~d~~G~T~LH~Aa--- 489 (846)
+++.++..+....++.++... ...+|. ....|+.|+..+..+++..|+..|+ +++. .|..|.||||+|+
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK--QNRAGYSPIMLTALAT 156 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCC--CCCCCCCHHHHHHHHH
Confidence 345555566666665554311 000222 2346999999999999999999998 9998 9999999999999
Q ss_pred --HcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 044976 490 --GLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKG 567 (846)
Q Consensus 490 --~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~ 567 (846)
..++.+++++|++.|++++..|..|+||||+|+..|+.++|++|++.|+++| .+|..|.||||+|+..|+.+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n------~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN------VQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHHCCCHH
Confidence 6688999999999999999999999999999999999999999999999765 88999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCC
Q 044976 568 LAGYLSE-VALTSHLSS 583 (846)
Q Consensus 568 iv~~Ll~-~Ga~~~~~d 583 (846)
++++|++ .|++.+..|
T Consensus 231 iv~~Ll~~~gad~~~~d 247 (276)
T 4hbd_A 231 IAGLLLAVPSCDISLTD 247 (276)
T ss_dssp HHHHHHTSTTCCTTCCC
T ss_pred HHHHHHhcCCCCCcCcC
Confidence 9999999 897655543
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.78 E-value=1.5e-19 Score=189.92 Aligned_cols=122 Identities=25% Similarity=0.294 Sum_probs=113.6
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccC-CCCCcHHHHHHHcC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRD-INGWTALHWAARFG 525 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D-~~G~TpLh~Aa~~G 525 (846)
...|+.|+..+..+++..|+. |+++|. .|..|.||||+||..|+.++|++|+++|+++|.+| ..|+||||+|+..|
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 46 ETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHTTTCHHHHHHTTT-TCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHc-CCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 446999999999999999999 999999 99999999999999999999999999999999998 88999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHH----------------HcCcHHHHHHHHHcCC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAA----------------SSGHKGLAGYLSEVAL 577 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~----------------~~G~~~iv~~Ll~~Ga 577 (846)
+.++|++|+++|++++ .+|..|.||||+|+ ..|+.+++++|++++.
T Consensus 123 ~~~~v~~Ll~~ga~~~------~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 123 RPEVVEALVELGADIE------VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp CHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 9999999999999765 88899999998887 6789999999999764
No 93
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=99.77 E-value=3.3e-20 Score=165.43 Aligned_cols=89 Identities=33% Similarity=0.648 Sum_probs=81.6
Q ss_pred CCceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCCCCcceeEEeecCCccc
Q 044976 280 KQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLPGKVTLCITSGNRESC 359 (846)
Q Consensus 280 ~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~~~~ 359 (846)
..+++|+||||+|+|..|||||+|+|.|+..+.. |.|+||+.+|+++++++|+++|++|+|.+|.+||++.+++.. +
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~--~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~~-~ 80 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEASNN--YSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQI-I 80 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCCSSC--EEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTEE-C
T ss_pred CCcEEEEEECCCcccCCCCEEEEEEeECCCCCcc--EEEEECCEEEeEEEeECCEEEEEecCCCCceEeEEEEECCee-c
Confidence 3578999999999999999999999999987654 999999999999999999999999999999999999999875 6
Q ss_pred ceeeeeeeccCC
Q 044976 360 SEVKEFDYRVKP 371 (846)
Q Consensus 360 sev~~Fey~~~~ 371 (846)
++.+.|+|+.++
T Consensus 81 s~~~~FeY~~~P 92 (95)
T 2cxk_A 81 SNSVVFEYKSGP 92 (95)
T ss_dssp SCCEEEEECCC-
T ss_pred CCceEEEEeCCC
Confidence 999999999754
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.77 E-value=1.2e-18 Score=174.21 Aligned_cols=109 Identities=27% Similarity=0.289 Sum_probs=100.3
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccC-CCCCcHHHHHHHcC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRD-INGWTALHWAARFG 525 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D-~~G~TpLh~Aa~~G 525 (846)
...|+.|+..+..+.+..|+. |++++. .|..|.||||+|+..|+.+++++|++.|+++|.+| ..|+||||+|+..|
T Consensus 45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 45 ETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT-TSCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHh-cCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence 345788888888888888888 999999 99999999999999999999999999999999998 89999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC
Q 044976 526 REKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSG 564 (846)
Q Consensus 526 ~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G 564 (846)
+.++|++|+++|++++ .+|..|.||||+|+..+
T Consensus 122 ~~~~v~~Ll~~ga~~~------~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 122 RPEVVEALVELGADIE------VEDERGLTALELAREIL 154 (183)
T ss_dssp CHHHHHHHHHHTCCTT------CCCTTSCCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCc------CCCCCCCCHHHHHHHhc
Confidence 9999999999999765 88999999999998763
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=187.72 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=115.6
Q ss_pred HHHHHHHHhcHHHHHHHHhhCCCCCCCCC----CCCCCCcHHHHHHHc---CChhhHHHHHhCCCCCcccCCCCCcHHHH
Q 044976 448 WLLQEVLKDKLQQWLSSKSLRESDQPGCS----LSKKEQGIIHMVAGL---GFEWALNPILSCGVSINFRDINGWTALHW 520 (846)
Q Consensus 448 ~~L~~Al~~~~~~~l~~ll~~Gad~n~~~----~d~~G~T~LH~Aa~~---G~~~iv~~LL~~Gadin~~D~~G~TpLh~ 520 (846)
..|+.|+..+..+.+..++..|++++... .|..|.||||+|+.. |+.+++++|++.|+++|.+|..|+||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 45888999888999999999999998610 388999999999997 89999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 044976 521 AARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVALT 578 (846)
Q Consensus 521 Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga~ 578 (846)
|+..|+.++|++||++||+++ .+|..|.||||+|+..|+.+++++|+++|++
T Consensus 233 A~~~g~~~~v~~Ll~~gad~~------~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 233 AALYNQPDCLKLLLKGRALVG------TVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHTTCHHHHHHHHHTTCCCS------CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999765 8899999999999999999999999999975
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.76 E-value=2.9e-18 Score=159.73 Aligned_cols=101 Identities=21% Similarity=0.182 Sum_probs=91.9
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
.+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+||..|+.++|++|++.|++++ .+|..|+||
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~d~~g~tp 76 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN------APDKHHITP 76 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT------CCCTTSCCH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------cCCCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999765 889999999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++.+..+
T Consensus 77 L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 103 (123)
T 3aaa_C 77 LLSAVYEGHVSCVKLLLSKGADKTVKG 103 (123)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 999999999999999999998765443
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=3.5e-18 Score=190.74 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=116.7
Q ss_pred hHHHHHHHHh-cHHHHHHHHhhCCCCCCCCCCC--CCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHH
Q 044976 447 DWLLQEVLKD-KLQQWLSSKSLRESDQPGCSLS--KKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAAR 523 (846)
Q Consensus 447 d~~L~~Al~~-~~~~~l~~ll~~Gad~n~~~~d--~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~ 523 (846)
+..|+.|+.. +..+++..|+..|+++|. .| ..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~--~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNW--VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTC--CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCc--cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 3468999988 899999999999999998 77 899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 044976 524 FGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSGHKGLAGYLSEVAL 577 (846)
Q Consensus 524 ~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G~~~iv~~Ll~~Ga 577 (846)
.|+.++|++||++||+++ .+|..|.||||+|+..|+.+++++|+.++.
T Consensus 278 ~g~~~~v~~LL~~Gad~~------~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLG------ARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHCcCCCC------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999765 889999999999999999999999999885
No 98
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1e-18 Score=160.62 Aligned_cols=101 Identities=31% Similarity=0.400 Sum_probs=95.3
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
+|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN------ARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT------CCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc------ccCCCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999765 889999999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++.+..+
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence 999999999999999999998655433
No 99
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.75 E-value=7.7e-19 Score=177.25 Aligned_cols=124 Identities=11% Similarity=-0.064 Sum_probs=106.6
Q ss_pred HHHHHHhcHHHHHHHHhhCCCCCCCCCCC-CCCCcHHHHHHHcCCh----hhHHHHHhCCCCCcccCCCCCcHHHHHHHc
Q 044976 450 LQEVLKDKLQQWLSSKSLRESDQPGCSLS-KKEQGIIHMVAGLGFE----WALNPILSCGVSINFRDINGWTALHWAARF 524 (846)
Q Consensus 450 L~~Al~~~~~~~l~~ll~~Gad~n~~~~d-~~G~T~LH~Aa~~G~~----~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~ 524 (846)
++.|+..+..+.++.++..+ ++. .+ ..|.||||+|+..|+. +++++||++|+|+|.+|..|+||||+|+..
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~--~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKG--YED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHS--SSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcC--ccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 67788887777788777665 455 55 7899999999999985 489999999999999999999999999999
Q ss_pred CC------HHHHHHHHHcCCCCCCCCCCCCCCCCCC-cHHHHHHHcC-----cHHHHHHHHH-cCCCCCCCC
Q 044976 525 GR------EKMVAALLASGASAGAVTDPNPLDPTGR-TPAFIAASSG-----HKGLAGYLSE-VALTSHLSS 583 (846)
Q Consensus 525 G~------~eiV~~LL~~GA~v~~~~D~~~~d~~G~-TPL~lA~~~G-----~~~iv~~Ll~-~Ga~~~~~d 583 (846)
|+ .++|++||++||++| .+|..|. ||||+|+..+ +.+++++|++ +|++.+..|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADIT------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSS------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred CCcchhhHHHHHHHHHHCCCCCC------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 97 688999999999866 8999999 9999999954 4679999999 998655544
No 100
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.74 E-value=5.6e-18 Score=160.84 Aligned_cols=101 Identities=25% Similarity=0.296 Sum_probs=93.2
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
....|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|++.|++++ ..|..|.||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~d~~g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN------AVDAIGFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTCCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------cCCCCCCCH
Confidence 45678999999999999999999999999999999999999999999999999999999999765 889999999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++.+..+
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 110 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADVNAQD 110 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCcC
Confidence 999999999999999999998655443
No 101
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.73 E-value=2.2e-18 Score=167.58 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=104.5
Q ss_pred cccCcchhchhhhcCcHHHHHHHHccCCCChhhhhH----HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCc-HHHH
Q 044976 413 LGYHELRGMKADDDLWGQVIDSLLVGSGNSLDTIDW----LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQG-IIHM 487 (846)
Q Consensus 413 ~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~~d~----~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T-~LH~ 487 (846)
+..+.++++.|+..|..++++.|+.. +.+++..+. .||.|. .+..+++..|+..|++++. +|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~--~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC--ADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC--CCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHH
Confidence 44556778888888888888877763 566666554 366664 6678888999999999999 9999999 9999
Q ss_pred HHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 044976 488 VAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIA 560 (846)
Q Consensus 488 Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA 560 (846)
|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR------GSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC------ccCcCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999765 8899999998743
No 102
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.72 E-value=3e-17 Score=151.82 Aligned_cols=98 Identities=33% Similarity=0.457 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHH
Q 044976 480 KEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFI 559 (846)
Q Consensus 480 ~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~l 559 (846)
+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc------ccCCCCCcHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999765 889999999999
Q ss_pred HHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 560 AASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 560 A~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
|+..|+.+++++|+++|++.+..+
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~ 98 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKD 98 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHcChHHHHHHHHHcCCCCcccC
Confidence 999999999999999998655433
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.71 E-value=1.3e-17 Score=171.41 Aligned_cols=136 Identities=25% Similarity=0.217 Sum_probs=102.1
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCc
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLAS-GASAGAVTDPNPLDPTGRT 555 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~-GA~v~~~~D~~~~d~~G~T 555 (846)
.+..|.||||+||..|+.++|++|++.|+++|.+|..|+||||+||..|+.++|++|++. |++++ .+|..|.|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~------~~d~~g~t 142 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN------QQNKLGDT 142 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC------CCCTTSCC
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc------ccCCCCCC
Confidence 567899999999999999999999999999999999999999999999999999999999 99765 88999999
Q ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCCCCccccccccCCchhHHHhhhhcccccccCCCCccccchhhhhhhHhhhHHHH
Q 044976 556 PAFIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKNSAEVQAEITVNSISNGNISSTEDQLSLKDTLAAVRNAAQAA 635 (846)
Q Consensus 556 PL~lA~~~G~~~iv~~Ll~~Ga~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~sl~A~rna~~Aa 635 (846)
|||+|+..|+.+++++|+++|++.+..+. . +.++...+... +..+.+.++...+++.+....-
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~--g~t~l~~A~~~----------~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGARTDLRNI-----E--KKLAFDMATNA----------ACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSCCCCT-----T--SCCHHHHCCSH----------HHHHHHC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccC-----C--CCCHHHHhcch----------hHHHHHHHHhccchhhhccchh
Confidence 99999999999999999999987655442 2 33333322221 3345666666666665554443
No 104
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.70 E-value=5.7e-17 Score=161.99 Aligned_cols=99 Identities=25% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCcH
Q 044976 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLD-PTGRTP 556 (846)
Q Consensus 478 d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d-~~G~TP 556 (846)
+..|.||||+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+| ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------HRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------cCCCCCCCCH
Confidence 5689999999999999999999999 99999999999999999999999999999999999866 677 889999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++.+..+
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~~~~~d 140 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGADIEVED 140 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHhcCcHHHHHHHHHcCCCCcCCC
Confidence 999999999999999999998665443
No 105
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=4.1e-17 Score=149.46 Aligned_cols=90 Identities=29% Similarity=0.361 Sum_probs=85.4
Q ss_pred CCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH
Q 044976 477 LSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTP 556 (846)
Q Consensus 477 ~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TP 556 (846)
.|.+|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++ .+|..|.||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g~tp 93 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX------AQDKFGKTA 93 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------ccccCCCcH
Confidence 78899999999999999999999999999999999999999999999999999999999999765 889999999
Q ss_pred HHHHHHcCcHHHHHHH
Q 044976 557 AFIAASSGHKGLAGYL 572 (846)
Q Consensus 557 L~lA~~~G~~~iv~~L 572 (846)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.66 E-value=1.5e-16 Score=166.80 Aligned_cols=99 Identities=25% Similarity=0.228 Sum_probs=91.9
Q ss_pred CCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCcH
Q 044976 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLD-PTGRTP 556 (846)
Q Consensus 478 d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d-~~G~TP 556 (846)
+..|.||||+||..|+.++|+.|++ |+++|.+|..|+||||+||..|+.++|++|+++|++++ .+| ..|.||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------HRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------CCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------cCCCCCCCCH
Confidence 3578999999999999999999999 99999999999999999999999999999999999876 666 789999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 044976 557 AFIAASSGHKGLAGYLSEVALTSHLSS 583 (846)
Q Consensus 557 L~lA~~~G~~~iv~~Ll~~Ga~~~~~d 583 (846)
||+|+..|+.+++++|+++|++.+..+
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~~~d 141 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIEVED 141 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 999999999999999999998765544
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.66 E-value=3.3e-16 Score=138.58 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=85.3
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
.||.|+..+..++++.|+..|++++. +|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 5 ~L~~A~~~~~~~~v~~Ll~~g~~~n~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~ 82 (93)
T 1n0q_A 5 PLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82 (93)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 57888888888999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 044976 529 MVAALLASGAS 539 (846)
Q Consensus 529 iV~~LL~~GA~ 539 (846)
++++|+++||+
T Consensus 83 ~~~~Ll~~ga~ 93 (93)
T 1n0q_A 83 VVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999984
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.66 E-value=1.9e-16 Score=197.07 Aligned_cols=145 Identities=23% Similarity=0.303 Sum_probs=115.2
Q ss_pred hHHHHHhhHHHHhHHHHHHHHHHHHHHhhhhhcccCCCCCccccHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 044976 631 AAQAAARIQSAFRAHSFRKRQQRDLAAIGASLDEYGINPDDIPGLSAISKLAFRNARDHNSAALSIQKKYRGWKGRKDYL 710 (846)
Q Consensus 631 a~~Aaa~IQa~~R~~~~R~r~l~~r~~~~~~lq~~~~~~~~ar~~~~~~~~~~~~~~~~~~aAi~IQ~~~R~~~~Rk~~~ 710 (846)
...+|..||+.||+|..|++|++.+.++ ..+|.++|+. .+|..+.. .+...||+.||++||||+.|+.|.
T Consensus 767 l~~aa~~IQa~~Rg~l~Rk~~~~~r~aa-i~IQ~~~Rg~-~aR~~~~~--------lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRAA-ITIQRYVRGH-QARCYATF--------LRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHH-HHhhcccc--------cccchhHHHHHHHHhhHHHHHHHH
Confidence 4678999999999999999999988777 6778776654 22222211 235779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHHHHh
Q 044976 711 AIRQKVVKIQAHVRGYQVRKKYKVI---WAVGVLDKVILRWRRKGVGLRGFRPETESNDESDDEDILKVFRRQKVDATID 787 (846)
Q Consensus 711 ~~r~aai~IQa~~Rg~~~Rk~y~~~---~aa~~IQk~ir~~r~r~~~~r~~r~~~~~iq~~~~r~~~~~~R~q~~~~~~~ 787 (846)
.++.+++.||++|||+++|+.|+.+ .|++.||+.+|+|+.|+ .+. + .+
T Consensus 837 ~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~---------------------------~y~-~-~~ 887 (1080)
T 2dfs_A 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV---------------------------HYH-R-TL 887 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH---------------------------HTT-T-TH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHH-H-HH
Confidence 9999999999999999999999887 68999999998887662 111 1 36
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 044976 788 ESVSRVLSMVDSPTARNQYRRMLERYR 814 (846)
Q Consensus 788 ~a~~~iQs~~R~~~aR~~y~rl~~~~~ 814 (846)
+|++.||++||++.+|++|++++.+.+
T Consensus 888 ~aai~iQs~~R~~laRr~~~~Lk~ear 914 (1080)
T 2dfs_A 888 KAIVYLQCCYRRMMAKRELKKLKIEAR 914 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999987765
No 109
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.65 E-value=6.9e-17 Score=175.33 Aligned_cols=136 Identities=14% Similarity=-0.017 Sum_probs=114.1
Q ss_pred CcchhchhhhcCcHHHHHHHHccCCCChhh------hh----HHHHHHHHh---cHHHHHHHHhhCCCCCCCCCCCCCCC
Q 044976 416 HELRGMKADDDLWGQVIDSLLVGSGNSLDT------ID----WLLQEVLKD---KLQQWLSSKSLRESDQPGCSLSKKEQ 482 (846)
Q Consensus 416 ~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~------~d----~~L~~Al~~---~~~~~l~~ll~~Gad~n~~~~d~~G~ 482 (846)
...+++.|+..+....+..++. .+.+++. .+ ..||.|+.. +..+++..|+..|+++|. +|..|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~--~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC--CCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC--CCCCCC
Confidence 3456888999999998888875 4555554 22 369999986 788999999999999999 999999
Q ss_pred cHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 044976 483 GIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAAS 562 (846)
Q Consensus 483 T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~ 562 (846)
||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh~A~~ 295 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLHVDYS 295 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC----
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999984 47899999999
Q ss_pred cCcH
Q 044976 563 SGHK 566 (846)
Q Consensus 563 ~G~~ 566 (846)
.|+.
T Consensus 296 ~g~~ 299 (301)
T 2b0o_E 296 WVIS 299 (301)
T ss_dssp ----
T ss_pred cCCc
Confidence 9874
No 110
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.63 E-value=4.6e-18 Score=190.32 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=106.3
Q ss_pred cchhchhhhcCcHHHHHHHHccCCC-----Chhhhh-HHHHHHHHhcHHHHHHHHhhCCCCC---CCCCCCCCCCcHHHH
Q 044976 417 ELRGMKADDDLWGQVIDSLLVGSGN-----SLDTID-WLLQEVLKDKLQQWLSSKSLRESDQ---PGCSLSKKEQGIIHM 487 (846)
Q Consensus 417 ~~~l~~aa~~g~~~~i~~ll~~~~~-----~~~~~d-~~L~~Al~~~~~~~l~~ll~~Gad~---n~~~~d~~G~T~LH~ 487 (846)
.++++.|+..|..++++.|+..+.. .++..+ ..|+.|+..+..++++.|+..|+++ +. .+.. .||||+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i--~~~~-~TpLh~ 169 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI--QAEN-YHAFRL 169 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH--SHHH-HHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc--CCCC-CCHHHH
Confidence 4778888888888888887764331 233322 2588888888888888888888652 22 2222 788888
Q ss_pred HHHcCChhhHHHHHhCCCCCcc--cCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC
Q 044976 488 VAGLGFEWALNPILSCGVSINF--RDINGWTALHWAA-RFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSG 564 (846)
Q Consensus 488 Aa~~G~~~iv~~LL~~Gadin~--~D~~G~TpLh~Aa-~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G 564 (846)
||..|+.++|++|+++|++++. .|..|+||||+|| ..|+.++|++|++.|+ .|.||||+|+..|
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g 236 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------------HHHHHHHCTTTTT
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------------ccchHHHHHHHCC
Confidence 8888888888888888888776 7777888888888 8888888888887664 2678888888888
Q ss_pred cHHHHHHHHHcCCCC
Q 044976 565 HKGLAGYLSEVALTS 579 (846)
Q Consensus 565 ~~~iv~~Ll~~Ga~~ 579 (846)
+.+++++|+++|++.
T Consensus 237 ~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 237 EKYVNPFIARHVNRL 251 (376)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccc
Confidence 888888888877543
No 111
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.62 E-value=1.9e-17 Score=185.41 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=110.4
Q ss_pred CcHHHHHHHHccCCCChhhhhHHHHHHHHhcHHHHHHHHhhCCCCC---CCCCCCCCCCcHHHHHHHcCChhhHHHHHhC
Q 044976 427 LWGQVIDSLLVGSGNSLDTIDWLLQEVLKDKLQQWLSSKSLRESDQ---PGCSLSKKEQGIIHMVAGLGFEWALNPILSC 503 (846)
Q Consensus 427 g~~~~i~~ll~~~~~~~~~~d~~L~~Al~~~~~~~l~~ll~~Gad~---n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~ 503 (846)
+...+++.+... +.+. ...|+.|+..+..++++.|+..|+.. +. .+..|.||||+||..|+.++|++|+++
T Consensus 77 ~~~~~~~~l~~~-g~~~---~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~--~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ 150 (376)
T 2aja_A 77 NAKQLWSDAHKK-GIKS---EVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGHLHVLNRLCEL 150 (376)
T ss_dssp TCTTHHHHHHHH-TCCH---HHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred CCHHHHHHHHHc-CCCc---CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH--hccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 444455555543 3332 36799999999999999999999833 23 556889999999999999999999999
Q ss_pred CCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC--CCCCCCcHHHHHH-HcCcHHHHHHHHHcCC
Q 044976 504 GVSI---NFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNP--LDPTGRTPAFIAA-SSGHKGLAGYLSEVAL 577 (846)
Q Consensus 504 Gadi---n~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~--~d~~G~TPL~lA~-~~G~~~iv~~Ll~~Ga 577 (846)
|+++ +..+.+ +||||+||..|+.++|++|+++|++++ . .|..|.||||+|+ .+|+.++|++|+++|+
T Consensus 151 gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 151 APTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred CCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 9862 333333 999999999999999999999999754 4 6788999999999 9999999999999773
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.61 E-value=3.5e-16 Score=143.60 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=91.7
Q ss_pred HHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHH
Q 044976 449 LLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREK 528 (846)
Q Consensus 449 ~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~e 528 (846)
.|+.|+..+..+++..|+..|++++. .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 12 ~L~~A~~~~~~~~~~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~ 89 (115)
T 2l6b_A 12 PLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89 (115)
T ss_dssp HHHHHHHHTCHHHHHHHTTTTCCSSC--CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHH
Confidence 57777777778888889999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCcHH
Q 044976 529 MVAALLASGASAGAVTDPNPLDPTGRTPA 557 (846)
Q Consensus 529 iV~~LL~~GA~v~~~~D~~~~d~~G~TPL 557 (846)
++++|+++|+++| .++..|.||-
T Consensus 90 ~~~~Ll~~ga~~n------~~~~~~~~~~ 112 (115)
T 2l6b_A 90 IVKLLDAKGADVN------ARSWGSSHHH 112 (115)
T ss_dssp HHHHHHTTSSSHH------HHSCCCC---
T ss_pred HHHHHHHcCCCCC------cCCccccccc
Confidence 9999999999866 7888888873
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.59 E-value=2.2e-15 Score=174.72 Aligned_cols=130 Identities=14% Similarity=0.010 Sum_probs=107.3
Q ss_pred chhchhhhcCcHHHHHHHHccCCCChhhh----------hHHHHHHHH---hcHHHHHHHHhhCCCCCCCCCCCCCCCcH
Q 044976 418 LRGMKADDDLWGQVIDSLLVGSGNSLDTI----------DWLLQEVLK---DKLQQWLSSKSLRESDQPGCSLSKKEQGI 484 (846)
Q Consensus 418 ~~l~~aa~~g~~~~i~~ll~~~~~~~~~~----------d~~L~~Al~---~~~~~~l~~ll~~Gad~n~~~~d~~G~T~ 484 (846)
..++.|+..|....++.|+.. |+++|.. ...||.|+. .+..+++..|+..|+++|. +|..|.||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~--~d~~g~Tp 210 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTA 210 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC--CCSSSCCH
T ss_pred HHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc--cCCCCCcH
Confidence 568889999999999888874 4665543 336999966 7889999999999999999 99999999
Q ss_pred HHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 044976 485 IHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAAS 562 (846)
Q Consensus 485 LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~ 562 (846)
||+||..|+.++|++||++|+|+|.+|..|+||||+|+..|+.+++++|+++||+++ . ||+|++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~------~------~~~h~~~~ 276 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF------A------FPLHVDYS 276 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC------C------Ccceeecc
Confidence 999999999999999999999999999999999999999999999999999999865 2 57776654
No 114
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.57 E-value=3.8e-15 Score=166.18 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=110.5
Q ss_pred Ccchhchhhhc-CcHHHHHHHHccCCCChhhhh------HHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHH
Q 044976 416 HELRGMKADDD-LWGQVIDSLLVGSGNSLDTID------WLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMV 488 (846)
Q Consensus 416 ~~~~l~~aa~~-g~~~~i~~ll~~~~~~~~~~d------~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~A 488 (846)
..++++.|+.. +..++++.|+. .+++++..+ ..||.|+..+..+++..|+..|+++|. .|..|.||||+|
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~--~d~~G~TpLh~A 275 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHA 275 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHH
Confidence 44678888888 99999988886 677777766 369999999999999999999999999 999999999999
Q ss_pred HHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC
Q 044976 489 AGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASAGAVTDPNPLDPTGRTPAFIAASSG 564 (846)
Q Consensus 489 a~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v~~~~D~~~~d~~G~TPL~lA~~~G 564 (846)
+..|+.++|++||++|++++.+|..|+||||+|+..|+.++|++|+..|.... +....+..+.|+++++....
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~---~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA---EAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc---cccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886432 34466788999999887654
No 115
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.54 E-value=1.4e-14 Score=155.23 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=110.3
Q ss_pred cccccCcchhchhhhcCcHHHHHHHHccCCCChhh----------hhHHHHHHHHh---cHHHHHHHHhhCCCCCCCCCC
Q 044976 411 VELGYHELRGMKADDDLWGQVIDSLLVGSGNSLDT----------IDWLLQEVLKD---KLQQWLSSKSLRESDQPGCSL 477 (846)
Q Consensus 411 ~~~~~~~~~l~~aa~~g~~~~i~~ll~~~~~~~~~----------~d~~L~~Al~~---~~~~~l~~ll~~Gad~n~~~~ 477 (846)
......+.+++.++..+....+..++.. +.+++. ....||.|+.. +..+++..|+..|+++|. +
T Consensus 125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~--~ 201 (278)
T 1dcq_A 125 ADTAAKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--Q 201 (278)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--C
T ss_pred cccchhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc--c
Confidence 3344456778888888888888777764 344322 23469999998 889999999999999999 9
Q ss_pred CCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044976 478 SKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGREKMVAALLASGASA 540 (846)
Q Consensus 478 d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~~eiV~~LL~~GA~v 540 (846)
|..|.||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|++.
T Consensus 202 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999964
No 116
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.52 E-value=5.9e-14 Score=174.73 Aligned_cols=126 Identities=23% Similarity=0.243 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccccccc
Q 044976 687 RDHNSAALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVRKKYKVI---WAVGVLDKVILRWRRKGVGLRGFRPETE 763 (846)
Q Consensus 687 ~~~~~aAi~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~~~Rk~y~~~---~aa~~IQk~ir~~r~r~~~~r~~r~~~~ 763 (846)
.+...+|+.||++||||+.|++|++++.+++.||++|||+++|++|+.+ +||++||++||+|+.| +.|+.++..++
T Consensus 765 ~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~R-k~y~~lr~aai 843 (1080)
T 2dfs_A 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVR-KRYQCMRDATI 843 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHH-HHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999876 9999999999999998 56667778889
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 044976 764 SNDESDDEDILKVFRRQKVDATIDESVSRVLSMVDSPTARNQYRRMLERYRQA 816 (846)
Q Consensus 764 ~iq~~~~r~~~~~~R~q~~~~~~~~a~~~iQs~~R~~~aR~~y~rl~~~~~~~ 816 (846)
.||+ .+|++ ..|++....+...|+++||+.||++.+|+.|++++.+.-..
T Consensus 844 ~IQs-~~Rg~--laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~i 893 (1080)
T 2dfs_A 844 ALQA-LLRGY--LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893 (1080)
T ss_dssp HHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHH
T ss_pred HHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999 99999 77776655434679999999999999999998876554433
No 117
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.46 E-value=1.8e-13 Score=124.99 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=80.7
Q ss_pred hHHHHHHHHhcHHHHHHHHhhCCCCCCCCCCCCCCCcHHHHHHHcCChhhHHHHHhCCCCCcccCCCCCcHHHHHHHcCC
Q 044976 447 DWLLQEVLKDKLQQWLSSKSLRESDQPGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVSINFRDINGWTALHWAARFGR 526 (846)
Q Consensus 447 d~~L~~Al~~~~~~~l~~ll~~Gad~n~~~~d~~G~T~LH~Aa~~G~~~iv~~LL~~Gadin~~D~~G~TpLh~Aa~~G~ 526 (846)
...|+.|+..+..+++..|+..|++++. +|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~--~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 25 GKKLLEAARAGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 3458888888889999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 044976 527 EKMVAAL 533 (846)
Q Consensus 527 ~eiV~~L 533 (846)
.+++++|
T Consensus 103 ~~~~~~L 109 (110)
T 2zgd_A 103 EDLAEIL 109 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 118
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.05 E-value=3.4e-10 Score=91.60 Aligned_cols=48 Identities=40% Similarity=0.654 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044976 688 DHNSAALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVRKKYKVI 735 (846)
Q Consensus 688 ~~~~aAi~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~~~Rk~y~~~ 735 (846)
+++.+|+.||++||||..|+.|+.++.+++.||++|||+++|+.|..+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999987
No 119
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.71 E-value=3e-08 Score=76.87 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 044976 690 NSAALSIQKKYRGWKGRKDYLAIRQ--KVVKIQAHVRGYQVRKKY 732 (846)
Q Consensus 690 ~~aAi~IQ~~~R~~~~Rk~~~~~r~--aai~IQa~~Rg~~~Rk~y 732 (846)
..+++.||++|||++.|+.|..+++ ++++||++|||+.+|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3578899999999999999998887 899999999999999887
No 120
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.7e-07 Score=69.54 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q 044976 712 IRQKVVKIQAHVRGYQVRKKYKVI---WAVGVLDKVILRWRRKGV 753 (846)
Q Consensus 712 ~r~aai~IQa~~Rg~~~Rk~y~~~---~aa~~IQk~ir~~r~r~~ 753 (846)
++.+++.||++|||+++|+.|..+ .||++||+.+|+|..++.
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 467899999999999999999988 499999999999998843
No 121
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.25 E-value=2.1e-06 Score=69.17 Aligned_cols=41 Identities=22% Similarity=0.522 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 044976 711 AIRQKVVKIQAHVRGYQVRKKYKVI-WAVGVLDKVILRWRRK 751 (846)
Q Consensus 711 ~~r~aai~IQa~~Rg~~~Rk~y~~~-~aa~~IQk~ir~~r~r 751 (846)
.+..++++||++|||+++|+.|.++ .|++.||+.+|||..+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR 44 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999 9999999999999887
No 122
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=97.54 E-value=3.1e-05 Score=71.74 Aligned_cols=106 Identities=24% Similarity=0.422 Sum_probs=78.8
Q ss_pred ceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCC-CCCCcceeEEeecCCcccc
Q 044976 282 KFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPP-RLPGKVTLCITSGNRESCS 360 (846)
Q Consensus 282 ~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~-h~~G~vpL~vA~~~~~~~s 360 (846)
.+.|+-++|+.|...||+.|.|.|..+.++ +-|.||+..+-.+++...+++|.+|| +.+|.|++.+.-.+...|.
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~~G----lqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf~~ 80 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVIIIGDNFFDG----LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCK 80 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEEEEEESCCTT----CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEECT
T ss_pred CCceeEecCCCCCccCCeEEEEeCCCcccC----CEEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCccccc
Confidence 368999999999999999999999766554 77999999888888889999999998 4589999888665554343
Q ss_pred e-eeeeeeccCCCCCCCccccccCCCHHHHHHHHHHHHHHhcCCC
Q 044976 361 E-VKEFDYRVKPNSYDNWSQKEATKSHDELLLLVRFVQMLLSDSS 404 (846)
Q Consensus 361 e-v~~Fey~~~~~~~~~~~~~~~~~~~~~~~l~~rlv~lLl~~~~ 404 (846)
. ...|.|-.-+...++ .+-.|+.+++-..+.
T Consensus 81 g~p~~F~Y~~l~ePtId-------------~gfqrl~k~~pr~pg 112 (138)
T 3muj_A 81 GAPGRFVYTALNEPTID-------------YGFQRLQKVIPRHPG 112 (138)
T ss_dssp TSCEEEEEECCCSCCHH-------------HHHHHHHHHSCCCTT
T ss_pred CCCceEEEecCCCCccc-------------cchhhhccccCCCCC
Confidence 2 345666543222222 345688887655544
No 123
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.22 E-value=0.00078 Score=55.12 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 044976 691 SAALSIQKKYRGWKGRKDYLAI---RQKVVKIQAHVRGYQVRK 730 (846)
Q Consensus 691 ~aAi~IQ~~~R~~~~Rk~~~~~---r~aai~IQa~~Rg~~~Rk 730 (846)
..++.||+..||+..|+.|.++ +.++..||..+|+|..++
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555555444 334444555555544443
No 124
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.18 E-value=0.00071 Score=55.18 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 044976 714 QKVVKIQAHVRGYQVRKKYKVI----WAVGVLDKVILRWRRK 751 (846)
Q Consensus 714 ~aai~IQa~~Rg~~~Rk~y~~~----~aa~~IQk~ir~~r~r 751 (846)
..++.||+.+||+++|+.|+++ .|+.+||+.+|.|...
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l 46 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEF 46 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555554 3444555555555544
No 125
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.00 E-value=0.0018 Score=52.93 Aligned_cols=42 Identities=31% Similarity=0.615 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 044976 711 AIRQKVVKIQAHVRGYQVRKKYKVI----WAVGVLDKVILRWRRKG 752 (846)
Q Consensus 711 ~~r~aai~IQa~~Rg~~~Rk~y~~~----~aa~~IQk~ir~~r~r~ 752 (846)
.+...++.||+.+||+++|+.|+++ .|+.+||+.+|.|...+
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556789999999999999999998 67779999999998873
No 126
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.96 E-value=0.001 Score=80.80 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 044976 687 RDHNSAALSIQKKYRGWKGRKDYLAI---RQKVVKIQAHVRGYQVRKKYK 733 (846)
Q Consensus 687 ~~~~~aAi~IQ~~~R~~~~Rk~~~~~---r~aai~IQa~~Rg~~~Rk~y~ 733 (846)
.+...+++.||++||||+.|++|+++ |.++++||+.||+|++|+.|.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 45777899999999999999999988 678899999999999988753
No 127
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.92 E-value=0.0015 Score=53.30 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 044976 689 HNSAALSIQKKYRGWKGRKDYLAI---RQKVVKIQAHVRGYQVRKK 731 (846)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~Rk~~~~~---r~aai~IQa~~Rg~~~Rk~ 731 (846)
.....+.||+..||+..|+.|.++ +.++..||..+|++..++.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456788999999999999999998 7788899999999998865
No 128
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.75 E-value=0.0024 Score=81.16 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 044976 687 RDHNSAALSIQKKYRGWKGRKDYLAIR---QKVVKIQAHVRGYQVRKKYK 733 (846)
Q Consensus 687 ~~~~~aAi~IQ~~~R~~~~Rk~~~~~r---~aai~IQa~~Rg~~~Rk~y~ 733 (846)
.+...+++.||++||||+.|++|.+++ .++++||+.||+|..|+.|.
T Consensus 789 ~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 789 LKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 356678999999999999999998874 68889999999999987753
No 129
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=96.66 E-value=0.00047 Score=72.75 Aligned_cols=84 Identities=29% Similarity=0.532 Sum_probs=67.6
Q ss_pred ceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCC-CCCCcceeEEeecCCcccc
Q 044976 282 KFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPP-RLPGKVTLCITSGNRESCS 360 (846)
Q Consensus 282 ~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~-h~~G~vpL~vA~~~~~~~s 360 (846)
.+.|+-++|+.|...||+.|+|.|..+.++ +-+.||...+-.+++...+++|.+|| +.+|.|.+.+.-.+...|.
T Consensus 231 tP~IkaIsPnEG~~tGG~tV~IiGenFf~G----LQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs~ksKqf~k 306 (402)
T 3mlp_A 231 TPCIKAISPSEGWTTGGATVIIIGDNFFDG----LQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCK 306 (402)
T ss_dssp CCEEEECSSCEECTTCCCEEEEEEECCCTT----CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEEST
T ss_pred CcceEEecCCCCCccCCeEEEEeCCCcccC----CEEEEccEeeeeEEecccceEEECCCCCCCCceEEEEEecCccccc
Confidence 469999999999999999999999766655 77899999998889999999999999 5589999888765554333
Q ss_pred -eeeeeeecc
Q 044976 361 -EVKEFDYRV 369 (846)
Q Consensus 361 -ev~~Fey~~ 369 (846)
..--|.|..
T Consensus 307 g~pgrF~YtA 316 (402)
T 3mlp_A 307 GTPGRFIYTA 316 (402)
T ss_dssp TSCEEEEEC-
T ss_pred CCCCceeeec
Confidence 223466654
No 130
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=96.43 E-value=0.0022 Score=57.22 Aligned_cols=85 Identities=22% Similarity=0.220 Sum_probs=58.8
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecccCCCC-CcccEEEecCCchHHH--HHhHhCccccccCCCCCCcceeEEeecCC-
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGSFLCDP-SESAWSCMFGDTEVPL--QIIQEGVIRCEAPPRLPGKVTLCITSGNR- 356 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~-~~~~~ac~fG~~eV~~--~Ll~~Ga~~c~~P~h~~G~vpL~vA~~~~- 356 (846)
+.+.|++|+|..|+. ||+|+|.|++|... .+. ..+..|..+..- .......+.|.++++..+.-|+.+...++
T Consensus 6 p~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~sdv-~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~~~~ 82 (99)
T 1uad_C 6 QPPLVTGISPNEGIP--WTKVTIRGENLGTGPTDL-IGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTKSGG 82 (99)
T ss_dssp CCCEEEEEESSEEST--TCEEEEEEECSCSSGGGE-EEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEETTTE
T ss_pred CCCEEEEEECCCcCC--CCEEEEEEEeCCCCcccc-eEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEECCCC
Confidence 457999999999988 79999999988654 221 367788774332 23455679999988776666666665432
Q ss_pred cccceeeeeeecc
Q 044976 357 ESCSEVKEFDYRV 369 (846)
Q Consensus 357 ~~~sev~~Fey~~ 369 (846)
...+.. .|.|.+
T Consensus 83 ~~~s~~-~F~y~~ 94 (99)
T 1uad_C 83 RGTSTV-SFKLLK 94 (99)
T ss_dssp ECEESS-CCEECC
T ss_pred cEEecc-eEEEeC
Confidence 334443 688864
No 131
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.42 E-value=0.017 Score=73.47 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 044976 707 KDYLAIRQKVVKIQAHVRGYQVRKKYKVI----WAVGVLDKVILRWRRKGV 753 (846)
Q Consensus 707 k~~~~~r~aai~IQa~~Rg~~~Rk~y~~~----~aa~~IQk~ir~~r~r~~ 753 (846)
.+-..+...++.||++||||++|++|+++ .|+++||+.+|+|..++.
T Consensus 786 ~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 786 ERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345567889999999999999999987 688999999999988754
No 132
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.25 E-value=0.0091 Score=72.49 Aligned_cols=46 Identities=28% Similarity=0.509 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 044976 707 KDYLAIRQKVVKIQAHVRGYQVRKKYKVI----WAVGVLDKVILRWRRKG 752 (846)
Q Consensus 707 k~~~~~r~aai~IQa~~Rg~~~Rk~y~~~----~aa~~IQk~ir~~r~r~ 752 (846)
.+-..+...++.||++|||+++|++|+++ .|+++||+.+|+|..++
T Consensus 773 ~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r 822 (837)
T 1kk8_A 773 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 822 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33455667899999999999999999997 78899999999999873
No 133
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.012 Score=66.48 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred cCCceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCCC-CcceeEEeecCCc
Q 044976 279 QKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLP-GKVTLCITSGNRE 357 (846)
Q Consensus 279 ~~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~-G~vpL~vA~~~~~ 357 (846)
+.+.+.|++|+|..+. .|++|+|.|+.|.+ ......++||..+..-.-+....+.|.+|.+.. |..++.+-..+..
T Consensus 14 ~~~p~~i~~~~P~~g~--~~~~~~i~G~nfg~-~~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~~~~ 90 (430)
T 3tc9_A 14 PNKPVVISEFSPKEGG--LGTRMLLYGENFGS-DISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGE 90 (430)
T ss_dssp TTSCCEEEEEECSEEC--TTCEEEEEEECCCS-CGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECTTSC
T ss_pred CCCCCEEEEEcCCCCC--CCCEEEEEEEcCCC-CccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecCCcc
Confidence 4567799999999999 79999999987765 234489999998766545667789999999997 8888887765532
Q ss_pred ----ccceeeeeeecc
Q 044976 358 ----SCSEVKEFDYRV 369 (846)
Q Consensus 358 ----~~sev~~Fey~~ 369 (846)
..+ -..|+|..
T Consensus 91 ~~~~~~~-~~~F~y~~ 105 (430)
T 3tc9_A 91 EIANTEA-NEKFVYQK 105 (430)
T ss_dssp EEEEEEC-SSCCEECC
T ss_pred eeeEEEE-eeEEEEEE
Confidence 222 34566654
No 134
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=94.47 E-value=0.015 Score=69.90 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCCCCCCeEEEEecccCCCCC-----cccEEEecCCchHHH--HHhHhCccccccCCCCCCcceeEEeec
Q 044976 282 KFAIREISPDWGYANESTKVIIVGSFLCDPS-----ESAWSCMFGDTEVPL--QIIQEGVIRCEAPPRLPGKVTLCITSG 354 (846)
Q Consensus 282 ~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~-----~~~~ac~fG~~eV~~--~Ll~~Ga~~c~~P~h~~G~vpL~vA~~ 354 (846)
.+.|+.|+|..|+..|||.|+|+|.++.... .....+.+|..+..- .......+.|.+|+...|..++.+...
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~~~~~~v~V~v~ 620 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIIIS 620 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC-----CCCEEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCCCCCccEEEEEe
Confidence 4799999999999999999999998776431 123678888874322 234456799999997766556666655
Q ss_pred CCcccceeeeeeecc
Q 044976 355 NRESCSEVKEFDYRV 369 (846)
Q Consensus 355 ~~~~~sev~~Fey~~ 369 (846)
++...+....|.|..
T Consensus 621 ~~~~~~~~~~FtY~~ 635 (727)
T 2uzx_B 621 NGHGTTQYSTFSYVD 635 (727)
T ss_dssp CSSCEEEEECCBCCC
T ss_pred CCcceeccccccccc
Confidence 443334455788863
No 135
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=93.79 E-value=0.011 Score=71.05 Aligned_cols=73 Identities=16% Similarity=0.339 Sum_probs=1.2
Q ss_pred ceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCC-CCcceeEEeecCC
Q 044976 282 KFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRL-PGKVTLCITSGNR 356 (846)
Q Consensus 282 ~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~-~G~vpL~vA~~~~ 356 (846)
.+.|+.|+|.+++..|||.|+|+|.++..... ..+.+|..+..-..+....+.|.+|+.. +|.+|+.|..++.
T Consensus 635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~--~~V~ig~~~C~i~~~s~t~I~C~tP~~~~~g~~~V~V~idg~ 708 (727)
T 2uzx_B 635 DPVITSISPKYGPMAGGTLLTLTGNYLNSGNS--RHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKIDLA 708 (727)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred cceeEEECCCccccCCCEEEEEEEECCCCCCc--eEEEECCEEeeEEeecCCEEEEEcCCCCCCceEEEEEEECCE
Confidence 56899999999999999999999998876543 6778888766555567788999999875 6888888888765
No 136
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.57 E-value=0.021 Score=65.50 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=63.3
Q ss_pred cCCceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCCC-CcceeEEeecCC-
Q 044976 279 QKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLP-GKVTLCITSGNR- 356 (846)
Q Consensus 279 ~~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~-G~vpL~vA~~~~- 356 (846)
+.|...|++|+|..+.. |++|+|.|+.|... .....++||..+..-.-+....+.|.+|.+.. |.+++.+.-..+
T Consensus 14 p~~p~~i~~~~P~~G~~--~t~~~I~G~nFg~d-~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~v~~~~~~ 90 (496)
T 3kya_A 14 PSKPVAISDFTPKEGGA--YQKLLIYGENFGTD-VSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENA 90 (496)
T ss_dssp TTSCCEEEEEECSEECT--TCEEEEEEECCCSC-GGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEESCGGGC
T ss_pred CCCCcEEEEEcCCCCCC--CCEEEEEeecCCCC-cceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEEEEecCCc
Confidence 56778999999999988 79999999766542 23499999998765444556679999999886 888887755432
Q ss_pred -cccceeeeeeecc
Q 044976 357 -ESCSEVKEFDYRV 369 (846)
Q Consensus 357 -~~~sev~~Fey~~ 369 (846)
...++ ..|+|..
T Consensus 91 ~~~~~~-~~F~Y~~ 103 (496)
T 3kya_A 91 VTTTAS-TTFSYEK 103 (496)
T ss_dssp EEEECS-SCCEECC
T ss_pred eEEEec-ceEEEEE
Confidence 12332 4677753
No 137
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.39 E-value=0.024 Score=63.34 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=64.8
Q ss_pred ccCCceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCC----chHHHHHhHhCccccccCCCCCCcceeEEee
Q 044976 278 AQKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGD----TEVPLQIIQEGVIRCEAPPRLPGKVTLCITS 353 (846)
Q Consensus 278 ~~~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~----~eV~~~Ll~~Ga~~c~~P~h~~G~vpL~vA~ 353 (846)
.+.+...|++|+|..+. .|++|+|.|+.|.+. .....++||. .+..-..+....+.|.+|....|..++.+..
T Consensus 13 ~~~~~~~~~~~~p~~g~--~~~~~~i~g~nfg~~-~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp~~~~g~~~i~v~~ 89 (409)
T 3hrp_A 13 DPNQPVTVESFMPVEGK--LREKVIVKGSNFGTD-KSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIV 89 (409)
T ss_dssp CTTSCCEEEEEECSEEC--TTCEEEEEEECCCSC-GGGEEEEEECSSCEEEEEEEEEETTEEEEECCSCCSEEEEEEEEE
T ss_pred CCCCCcEEEEEcCCCCC--CCcEEEEEeEcCCCC-ccceEEEECCcccceEEEEEEECCCEEEEEECCCCCCcEEEEEEE
Confidence 35677799999999988 799999999776552 3448999999 6544444555669999999988888998887
Q ss_pred cCCcccceeeeeeecc
Q 044976 354 GNRESCSEVKEFDYRV 369 (846)
Q Consensus 354 ~~~~~~sev~~Fey~~ 369 (846)
.+....++ ..|.|..
T Consensus 90 ~~~~~~~~-~~F~y~~ 104 (409)
T 3hrp_A 90 DGKEVTTD-GTFKYEQ 104 (409)
T ss_dssp TTEEEECS-SCEEECC
T ss_pred CCeeEEEe-eeEEEec
Confidence 66533332 3466643
No 138
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.55 E-value=0.1 Score=35.83 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 044976 689 HNSAALSIQKKYRGWKGRKD 708 (846)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~Rk~ 708 (846)
++-+|+.||++||+|+.|+.
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55688889999999888764
No 139
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=92.12 E-value=0.095 Score=34.92 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 044976 689 HNSAALSIQKKYRGWKGRK 707 (846)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~Rk 707 (846)
++.||+.||++||+|+.|+
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5568888999998888764
No 140
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.83 E-value=0.07 Score=60.10 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=56.8
Q ss_pred ccCCceEEEEecCCCCCCCCCeEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCCCC-CcceeEEeecC
Q 044976 278 AQKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPRLP-GKVTLCITSGN 355 (846)
Q Consensus 278 ~~~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~~-G~vpL~vA~~~ 355 (846)
-+.+...|++|+|..+.. |++|+|.|++|.+. .....++||..+..-.-.....+.|.+|.... |.+.+.+...+
T Consensus 15 ~~~~p~~i~~~~P~~g~~--~~~~~i~G~nfg~~-~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~~ 90 (433)
T 4hw6_A 15 NPKEEIVVEKFLPTEGRK--GTRVVVYGRNFGND-VSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDD 90 (433)
T ss_dssp CTTSCCEEEEEESSEECT--TCEEEEEEECCCSC-GGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECTT
T ss_pred CCCCCCEEEEECCCCCCC--CCEEEEEeECCCCC-cceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecCC
Confidence 355677999999999877 99999999877652 33489999998655333444569999998775 88888776544
No 141
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=89.58 E-value=0.52 Score=58.52 Aligned_cols=42 Identities=7% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044976 689 HNSAALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVRKK 731 (846)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~~~Rk~ 731 (846)
...+|+.||+ +|||..|++|++++++++.||..+|+.+.|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777774 79999999999999999999999998876655
No 142
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.53 E-value=0.37 Score=43.60 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=61.1
Q ss_pred ccCCceEEEEecCCCCCCCCCeEEEEecccCCCCCccc-----------EEEecCCchHHHHHhHhCccccccCCCC---
Q 044976 278 AQKQKFAIREISPDWGYANESTKVIIVGSFLCDPSESA-----------WSCMFGDTEVPLQIIQEGVIRCEAPPRL--- 343 (846)
Q Consensus 278 ~~~~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~-----------~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~--- 343 (846)
+..-++.|...|-.-++..||-+|.++|..+.....+- |- ++|++. +.+.+..+++|.+||=.
T Consensus 4 ~a~~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~kd~kV~F~E~~~dG~~~WE-~~a~f~--~d~~~q~aivf~tPpY~~~~ 80 (114)
T 2yrp_A 4 GSSGLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWE-EEATVN--RLQSNEVTLTLTVPEYSNKR 80 (114)
T ss_dssp CCCSCCEEEEEESSCEETTCCSEEEEEEESCCTTCEEEEECBCTTSCBCCC-CBCCBC--TTTCBTTEEEEECCCCSCCS
T ss_pred CCCCCCEEEEecCcccccCCCCEEEEEecccCCCCEEEEEEECCCCCcceE-EeeEEC--hHHcccccEEEecCCCCCCc
Confidence 34578999999999999999999999996432212111 31 233444 45567789999999822
Q ss_pred ---CCcceeEEeecCCcccceeeeeeecc
Q 044976 344 ---PGKVTLCITSGNRESCSEVKEFDYRV 369 (846)
Q Consensus 344 ---~G~vpL~vA~~~~~~~sev~~Fey~~ 369 (846)
|=.|-|++ +.+...+|+...|+|..
T Consensus 81 I~~pV~V~~~l-~~~~rk~Se~~~FtY~P 108 (114)
T 2yrp_A 81 VSRPVQVYFYV-SNGRRKRSPTQSFRFLP 108 (114)
T ss_dssp CSSCEEEEEEE-ECSSSCBCCCEEEEEEC
T ss_pred cCCCeEEEEEE-CCCCCcccCCcCcEEec
Confidence 33455666 45545689999999976
No 143
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=88.62 E-value=4.4 Score=38.25 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 044976 737 AVGVLDKVILRWRRK 751 (846)
Q Consensus 737 aa~~IQk~ir~~r~r 751 (846)
+++.||+.+|+|..|
T Consensus 47 ~~i~iQktvR~~L~r 61 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCK 61 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 144
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=86.25 E-value=3.4 Score=38.99 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044976 712 IRQKVVKIQAHVRGYQVRKKYKVI 735 (846)
Q Consensus 712 ~r~aai~IQa~~Rg~~~Rk~y~~~ 735 (846)
.+.++++||+.+|||++|++|+..
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 345788888888888888888775
No 145
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=81.59 E-value=1 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044976 714 QKVVKIQAHVRGYQVRKK 731 (846)
Q Consensus 714 ~aai~IQa~~Rg~~~Rk~ 731 (846)
-++++||..||+|+.|+.
T Consensus 7 ~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467788888888887754
No 146
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=80.89 E-value=1.2 Score=53.86 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 044976 688 DHNSAALSIQKKYRGWKGRKDYLAIRQKV 716 (846)
Q Consensus 688 ~~~~aAi~IQ~~~R~~~~Rk~~~~~r~aa 716 (846)
+...+++.||++||||+.|++|+++|+++
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777777777777777766553
No 147
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=80.47 E-value=0.89 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044976 714 QKVVKIQAHVRGYQVRK 730 (846)
Q Consensus 714 ~aai~IQa~~Rg~~~Rk 730 (846)
.++++||..||+|+.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47788888888887764
No 148
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=76.09 E-value=2.7 Score=52.24 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 044976 714 QKVVKIQAHVRGYQVRKKYKVI-WAVGVLDKVILRWRRK 751 (846)
Q Consensus 714 ~aai~IQa~~Rg~~~Rk~y~~~-~aa~~IQk~ir~~r~r 751 (846)
+.++.|| .+||+++|++|+++ ++++.||+..|+++.|
T Consensus 776 ~~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r 813 (1052)
T 4anj_A 776 HLAELVK-RVNHWLICSRWKKVQWCSLSVIKLKNKIKYR 813 (1052)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 68999999999999 8888888866555433
No 149
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=75.57 E-value=2.2 Score=51.45 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044976 707 KDYLAIRQKVVKIQAHVRGYQVRKKYKVI 735 (846)
Q Consensus 707 k~~~~~r~aai~IQa~~Rg~~~Rk~y~~~ 735 (846)
.+-..+.+.++.||++||||++|++|+++
T Consensus 762 ~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~ 790 (795)
T 1w7j_A 762 IRADKLRAACIRIQKTIRGWLMRKKYMRM 790 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345667899999999999999999998
No 150
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=75.39 E-value=6.3 Score=35.56 Aligned_cols=85 Identities=16% Similarity=0.285 Sum_probs=57.6
Q ss_pred eEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc-----EEEe--cCCchHHHHHhHhCccccccCCCC----CCcce--
Q 044976 283 FAIREISPDWGYANESTKVIIVGS-FLCDPSESA-----WSCM--FGDTEVPLQIIQEGVIRCEAPPRL----PGKVT-- 348 (846)
Q Consensus 283 f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~-----~ac~--fG~~eV~~~Ll~~Ga~~c~~P~h~----~G~vp-- 348 (846)
..|...|=.-++..||.+|.++|. |......+. |-+. |...+ +....+++|.+||=. ..-|.
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~e~~WE~~g~f~~~D----vh~Q~aIvfktPpY~~~~I~~pV~V~ 79 (114)
T 1my7_A 4 LKICRVNRRSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD----VHRQVAIVFRTPPYADPSLQAPVRVS 79 (114)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEETTEEEECBCCGGG----BCTTSEEEEECCCCSCTTCCSCEEEE
T ss_pred cEEEEecCCceecCCCcEEEEEecccccCCCEEEEEccCeEEecccChhh----cccceeEEEECCCCCCCccCCCEEEE
Confidence 579999999999999999999995 444333332 6554 44433 456689999999832 22233
Q ss_pred eEEeecCCcccceeeeeeeccCC
Q 044976 349 LCITSGNRESCSEVKEFDYRVKP 371 (846)
Q Consensus 349 L~vA~~~~~~~sev~~Fey~~~~ 371 (846)
+++---+...+|+...|+|....
T Consensus 80 i~L~r~sd~~~Sep~~FtY~P~~ 102 (114)
T 1my7_A 80 MQLRRPSDRELSEPMEFQYLPDT 102 (114)
T ss_dssp EEEEETTTTEECCCEEEEEECCC
T ss_pred EEEEeCCCCCcCCCcccEEecCc
Confidence 34433223478999999998743
No 151
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=68.06 E-value=8.2 Score=34.61 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=57.2
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc-----EEEecCCchHHHHHhHhCccccccCCCC----CCcceeE
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGS-FLCDPSESA-----WSCMFGDTEVPLQIIQEGVIRCEAPPRL----PGKVTLC 350 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~-----~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~----~G~vpL~ 350 (846)
.-..|...|=.-++..||.+|.++|. |......+. |-+ +|+.. ...+....++++.+||=. ..-|.+.
T Consensus 11 ~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V~F~e~~WE~-~~~f~-~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~ 88 (110)
T 1zk9_A 11 SELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWEG-RADFS-QADVHRQIAIVFKTPPYEDLEISEPVTVN 88 (110)
T ss_dssp TTSCEEEESCSCCCTTCCCCCCEEESCCCTTSCCCEEEETTEEE-ECCCC-GGGCCCCCCCCCCCCCCSCTTCSSCEEEE
T ss_pred CCCEEEEecCCccccCCCCEEEEEecccccCCcEEEEechheee-ccccC-cccccccceEEEECCCCCCcccCCCeEEE
Confidence 45789999999999999999999985 445333332 654 44331 123456688999999822 2233333
Q ss_pred Eeec--CCcccceeeeeeecc
Q 044976 351 ITSG--NRESCSEVKEFDYRV 369 (846)
Q Consensus 351 vA~~--~~~~~sev~~Fey~~ 369 (846)
+... +...+|+...|+|..
T Consensus 89 i~L~r~sd~~~Sep~~FtY~P 109 (110)
T 1zk9_A 89 VFLQRLTDGVCSEPLPFTYLP 109 (110)
T ss_dssp ECCBCTTTCCBCCCEEEEECC
T ss_pred EEEEeCCCCCccCCcCcEEcC
Confidence 3332 334689999999964
No 152
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=67.72 E-value=11 Score=35.00 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=57.0
Q ss_pred eEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc-----EEEe--cCCchHHHHHhHhCccccccCCC-C-----CCcce
Q 044976 283 FAIREISPDWGYANESTKVIIVGS-FLCDPSESA-----WSCM--FGDTEVPLQIIQEGVIRCEAPPR-L-----PGKVT 348 (846)
Q Consensus 283 f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~-----~ac~--fG~~eV~~~Ll~~Ga~~c~~P~h-~-----~G~vp 348 (846)
..|..+|=.-++..||.+|.++|. +......+. |-+. |...+ +....|++|-+||= . +=.|-
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLceKv~K~Di~VrF~e~~WE~~g~f~~~d----Vh~Q~AIvfkTPpY~~~~I~~pV~V~ 79 (136)
T 1oy3_C 4 LKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD----VHRQVAIVFRTPPYADPSLQAPVRVS 79 (136)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEETTEEEECBCCGGG----BCTTSEEEEECCCCSCTTCCSCEEEE
T ss_pred cEEEEecCCccccCCCcEEEEEccccccCCCEEEEEccCeEEecccChhh----eecceEEEEECCCCCCccCCCCeEEE
Confidence 579999999999999999999885 444333322 7654 54433 45667899999982 2 22333
Q ss_pred eEEeecCCcccceeeeeeeccC
Q 044976 349 LCITSGNRESCSEVKEFDYRVK 370 (846)
Q Consensus 349 L~vA~~~~~~~sev~~Fey~~~ 370 (846)
+++---+...+|+.+.|+|...
T Consensus 80 iqL~rpsd~~~Sep~~F~Y~P~ 101 (136)
T 1oy3_C 80 MQLRRPSDRELSEPMEFQYLPD 101 (136)
T ss_dssp EEEEETTTTEECCCEEEEEECC
T ss_pred EEEEeCCCCCccCCcceEEecC
Confidence 4444323337899999999863
No 153
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=57.33 E-value=12 Score=33.93 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=55.0
Q ss_pred eEEEEecCCCCCCCCCeEEEEecc-cCCCCCcc----------cEEEecCCchHHHHHhHhCccccccCCCC----CCcc
Q 044976 283 FAIREISPDWGYANESTKVIIVGS-FLCDPSES----------AWSCMFGDTEVPLQIIQEGVIRCEAPPRL----PGKV 347 (846)
Q Consensus 283 f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~----------~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~----~G~v 347 (846)
+.|...|=.-++..||.+|.++|. |......+ .|-+ +|++. ...+-...+++|.+||=. ..-|
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~e~~~~g~~WE~-~~~f~-~~dvh~Q~aIvf~tPpY~~~~I~~pV 81 (119)
T 1ikn_C 4 LKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEG-FGDFS-PTDVHRQFAIVFKTPKYKDVNITKPA 81 (119)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSEEEEEEEECTTSCEEEE-ECCCC-GGGEETTTEEEEECCCCSCTTCSSCE
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEE-eEEeC-hhhccccceEEEECCCCCCCCcCCCE
Confidence 579999999999999999999995 33322211 1432 23321 122445688999999822 2223
Q ss_pred e--eEEeecCCcccceeeeeeeccCC
Q 044976 348 T--LCITSGNRESCSEVKEFDYRVKP 371 (846)
Q Consensus 348 p--L~vA~~~~~~~sev~~Fey~~~~ 371 (846)
. +++--.....+|+...|+|....
T Consensus 82 ~V~i~L~r~sd~~~Sep~~FtY~P~~ 107 (119)
T 1ikn_C 82 SVFVQLRRKSDLETSEPKPFLYYPEI 107 (119)
T ss_dssp EEEEEEEETTTCCBCCCEEEEEECCS
T ss_pred EEEEEEEcCCCCCccCCcccEeecCc
Confidence 3 33433223469999999998744
No 154
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=55.08 E-value=10 Score=36.72 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 044976 689 HNSAALSIQKKYRGWKGRKDYLA 711 (846)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~Rk~~~~ 711 (846)
...||+.||++||.|+.|+.+..
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 55689999999999998877543
No 155
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.06 E-value=8.5 Score=35.41 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=21.1
Q ss_pred eeecccCCCCccceeeeeccCCCCCceEEEe
Q 044976 94 CYYAHGEQNPNFQRRSYWMLDPAYEHIVLVH 124 (846)
Q Consensus 94 ~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvh 124 (846)
+|-+|--..-+-.+|-||.||. ..|.|-+
T Consensus 12 GWmVH~t~~d~~rKRHYWrLD~--K~Itlf~ 40 (129)
T 2d9z_A 12 GWMVHYTSRDNLRKRHYWRLDS--KCLTLFQ 40 (129)
T ss_dssp EEEEEEESSCCCCEEEEEEEES--SCEEEES
T ss_pred ceEEEEccCCccccceeeEecC--CeEEEEe
Confidence 6677765555569999999997 4677644
No 156
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=46.80 E-value=20 Score=31.85 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=52.7
Q ss_pred eEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc----------EEEecCCchHHHHHhHhCccccccCCCC----CCcc
Q 044976 283 FAIREISPDWGYANESTKVIIVGS-FLCDPSESA----------WSCMFGDTEVPLQIIQEGVIRCEAPPRL----PGKV 347 (846)
Q Consensus 283 f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~----------~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~----~G~v 347 (846)
..|...|=.-++..||.+|.++|. |.+....+. |-+ +|++. ...+-...+++|.+||=. ..-|
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g~~WE~-~~~f~-~~dvh~Q~aIvf~tPpY~~~~I~~pV 81 (106)
T 1u36_A 4 LKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVWEG-FGDFS-PTDVHRQFAICFKTPKYKDVNITKPA 81 (106)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEECC----CEEE-ECBCC-GGGEETTTEEEEECCCCSCTTCSSCE
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEE-eeecC-HHHcccceEEEEECCCCCCCccCCCE
Confidence 579999999999999999999995 443222211 432 22221 122334578999999822 2333
Q ss_pred eeEEee--cCCcccceeeeeeecc
Q 044976 348 TLCITS--GNRESCSEVKEFDYRV 369 (846)
Q Consensus 348 pL~vA~--~~~~~~sev~~Fey~~ 369 (846)
.+++-. .....+|+...|+|..
T Consensus 82 ~V~~~l~r~sd~~~Sep~~FtY~P 105 (106)
T 1u36_A 82 SVFVQLRRKSDLETSEPKPFLYYP 105 (106)
T ss_dssp EEEEEEECTTTCCBCCCEEEEEEC
T ss_pred EEEEEEEcCCCCCccCCcCcEEcC
Confidence 333333 2224689999999964
No 157
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=43.53 E-value=17 Score=45.06 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044976 692 AALSIQKKYRGWKGRKDYLAIRQKVVKIQAHVRGYQVRKKYKVI 735 (846)
Q Consensus 692 aAi~IQ~~~R~~~~Rk~~~~~r~aai~IQa~~Rg~~~Rk~y~~~ 735 (846)
-|..++.|+|+...+..+++.+.+++.||+++|++..++.+.+.
T Consensus 766 ~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 766 RANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 45567778888887777888888999999999998877776664
No 158
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=38.52 E-value=13 Score=23.65 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHH...
Q 044976 692 AALSIQKKYRGWKGRK... 707 (846)
Q Consensus 692 aAi~IQ~~~R~~~~Rk... 707 (846)
|+..||..||.++.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 6778999999888763
No 159
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=38.05 E-value=39 Score=35.34 Aligned_cols=87 Identities=16% Similarity=0.292 Sum_probs=57.1
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc-----EEEe--cCCchHHHHHhHhCccccccCCCC----CCcce
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGS-FLCDPSESA-----WSCM--FGDTEVPLQIIQEGVIRCEAPPRL----PGKVT 348 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~-----~ac~--fG~~eV~~~Ll~~Ga~~c~~P~h~----~G~vp 348 (846)
+-..|..+|-.-++..||.+|.++|. |......+. |-+. |...+ +-...+++|.+||=. ..-|.
T Consensus 174 ~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e~~WE~~~~f~~~d----vh~Q~aIvf~tPpY~~~~I~~pV~ 249 (286)
T 1ikn_A 174 AELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD----VHRQVAIVFRTPPYADPSLQAPVR 249 (286)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEETTEEEECBCCGGG----BCTTSEEEEECCCCSCTTCSSCEE
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEeccceEEeeecCHHH----hccceeEEEECCCCCCCCcCCCEE
Confidence 44589999999999999999999986 444333321 6433 43333 334578999999832 22233
Q ss_pred --eEEeecCCcccceeeeeeeccCC
Q 044976 349 --LCITSGNRESCSEVKEFDYRVKP 371 (846)
Q Consensus 349 --L~vA~~~~~~~sev~~Fey~~~~ 371 (846)
+++--.....+|+...|+|....
T Consensus 250 V~i~L~r~sd~~~Sep~~FtY~P~~ 274 (286)
T 1ikn_A 250 VSMQLRRPSDRELSEPMEFQYLPDT 274 (286)
T ss_dssp EEEEEECTTTCCBCCCEEEEEECCT
T ss_pred EEEEEEeCCCCCcCCCcCcEEecCc
Confidence 33332223478999999998743
No 160
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=33.66 E-value=12 Score=31.33 Aligned_cols=9 Identities=56% Similarity=1.121 Sum_probs=7.6
Q ss_pred cccCcccee
Q 044976 62 RKDGHNWRK 70 (846)
Q Consensus 62 ~~dg~~w~~ 70 (846)
=.|||+|||
T Consensus 14 ~~DGy~WRK 22 (76)
T 2ayd_A 14 VNDGYRWRK 22 (76)
T ss_dssp CCCSSCEEE
T ss_pred CCCCchhhh
Confidence 359999998
No 161
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=32.58 E-value=11 Score=31.51 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=8.0
Q ss_pred cccCccceec
Q 044976 62 RKDGHNWRKK 71 (846)
Q Consensus 62 ~~dg~~w~~~ 71 (846)
=.|||+|||=
T Consensus 17 ~dDGy~WRKY 26 (78)
T 1wj2_A 17 LDDGYRWRKY 26 (78)
T ss_dssp CCSSSCBCCC
T ss_pred CCCCchhhhC
Confidence 3699999874
No 162
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=31.25 E-value=36 Score=38.82 Aligned_cols=86 Identities=16% Similarity=0.319 Sum_probs=56.6
Q ss_pred ceEEEEecCCCCCCCCCeEEEEecc-cCCCCCcc-----cEEEe--cCCchHHHHHhHhCccccccCCCC----CC--cc
Q 044976 282 KFAIREISPDWGYANESTKVIIVGS-FLCDPSES-----AWSCM--FGDTEVPLQIIQEGVIRCEAPPRL----PG--KV 347 (846)
Q Consensus 282 ~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~-----~~ac~--fG~~eV~~~Ll~~Ga~~c~~P~h~----~G--~v 347 (846)
-..|..+|-.-++..||.+|.++|. |......+ .|-.. |...+ +....+++|.+||=. .. .|
T Consensus 176 eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~DikVrF~e~~WE~~a~f~~~D----vh~Q~AIvfkTPpY~~~~I~~pV~V 251 (540)
T 2o61_A 176 ELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQAD----VHRQVAIVFRTPPYADPSLQAPVRV 251 (540)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCBTTBCEEEEEETTEEEECBCCGGG----EETTTEEEEECCCCSSSCCSSCEEE
T ss_pred CCeEEEecCCccccCCCCeEEEEecccccCCcEEEEecccceeccccChhh----hcceeeEEEeCCCCCCCCCCCCeEE
Confidence 3479999999999999999999995 44433322 15543 44444 345688999999832 22 23
Q ss_pred eeEEeecCCcccceeeeeeeccCC
Q 044976 348 TLCITSGNRESCSEVKEFDYRVKP 371 (846)
Q Consensus 348 pL~vA~~~~~~~sev~~Fey~~~~ 371 (846)
-+++---....+|+.+.|+|....
T Consensus 252 ~iqL~r~sd~~~Sep~~FtY~P~~ 275 (540)
T 2o61_A 252 SMQLRRPSDRELSEPMEFQYLPDG 275 (540)
T ss_dssp EEEEECGGGCCBCCCEEEEEECC-
T ss_pred EEEEEeCCCCCcCCCcCcEEecCC
Confidence 334432123468999999998743
No 163
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=29.67 E-value=34 Score=22.18 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 044976 692 AALSIQKKYRGWKGRKDY 709 (846)
Q Consensus 692 aAi~IQ~~~R~~~~Rk~~ 709 (846)
|...||..||.++.|++-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 345688888888888763
No 164
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=28.20 E-value=60 Score=33.99 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=56.1
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecccCCCCCcc-----------cEEEecCCchHHHHHhHhCccccccCCCC------
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGSFLCDPSES-----------AWSCMFGDTEVPLQIIQEGVIRCEAPPRL------ 343 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~-----------~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~------ 343 (846)
..+.|..+|-.-++..||.+|.++|........+ .|-. +|.+. .......++++.+|+=.
T Consensus 184 ~~l~I~r~s~~sg~v~GG~Ei~Llc~kv~KDikVrF~E~~~dg~~~We~-~g~f~--~dvh~Q~AIvfkTPpY~~~~I~~ 260 (286)
T 1p7h_L 184 ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEM-EATVD--KDKSQPNMLFVEIPEYRNKHIRT 260 (286)
T ss_dssp CCCEEEEESCSEEETTCCCEEEEEEESCCSSCEEEEEEECSSSCEEEEE-EECBC--TTTCBTTEEEEECCCCSCTTCSS
T ss_pred CCCeEEEeccccccccCCcEEEEEecccCCCcEEEEEEECCCCCcceEE-eEEeC--ccccccceEEEECCCCccCccCC
Confidence 4579999999999999999999999533211111 1542 23333 23456789999999822
Q ss_pred CCcceeEEeecCCcccceeeeeeecc
Q 044976 344 PGKVTLCITSGNRESCSEVKEFDYRV 369 (846)
Q Consensus 344 ~G~vpL~vA~~~~~~~sev~~Fey~~ 369 (846)
+=.|-|++--. ...+|+...|+|..
T Consensus 261 pV~V~~~l~r~-d~~~Sep~~FtY~P 285 (286)
T 1p7h_L 261 PVKVNFYVING-KRKRSQPQHFTYHP 285 (286)
T ss_dssp CEEEEEEEEET-TTEECCCEEEEEEC
T ss_pred CeEEEEEEeCC-CCCcCCCcCceEec
Confidence 22333444334 34799999999964
No 165
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=26.96 E-value=41 Score=32.39 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044976 714 QKVVKIQAHVRGYQVRKKYKV 734 (846)
Q Consensus 714 ~aai~IQa~~Rg~~~Rk~y~~ 734 (846)
.+++.||.+||.|+.|+.++.
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 488999999999998887655
No 166
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=25.26 E-value=60 Score=33.89 Aligned_cols=85 Identities=15% Similarity=0.319 Sum_probs=55.9
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecccCCCCCc----------ccEEEecCCchHHHHHhHhCccccccCCCC------C
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGSFLCDPSE----------SAWSCMFGDTEVPLQIIQEGVIRCEAPPRL------P 344 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~----------~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~------~ 344 (846)
..+.|..+|-.-++..||.+|.++|..+..... ..|-. ||++. ...+...++++.+||=. +
T Consensus 180 ~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E~~~d~~~WE~-~~~f~--~~dvhQ~aIvf~tPpY~~~~I~~p 256 (281)
T 1imh_C 180 GVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKS-EAEID--MELFHQNHLIVKVPPYHDQHITLP 256 (281)
T ss_dssp CCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEESSSCTTCSCEE-EECBC--GGGCCSSEEEEECCCCSCTTCSSC
T ss_pred CCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEEeCCCCCceEE-eEEeC--hhhcccceEEEECCCCccCccCCC
Confidence 457899999999999999999999953221111 12654 45543 22334688999999832 2
Q ss_pred CcceeEEeecCCcccceeeeeeecc
Q 044976 345 GKVTLCITSGNRESCSEVKEFDYRV 369 (846)
Q Consensus 345 G~vpL~vA~~~~~~~sev~~Fey~~ 369 (846)
=.|-+++-- +....|+...|+|..
T Consensus 257 V~V~iqL~r-sd~~~S~p~~FtY~P 280 (281)
T 1imh_C 257 VSVGIYVVT-NAGRSHDVQPFTYTP 280 (281)
T ss_dssp EEEEEEEEE-TTEECCSCEEEEEEC
T ss_pred eEEEEEEEe-CCCCccCCcCceecC
Confidence 233344443 444788999999964
No 167
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=25.05 E-value=52 Score=34.21 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=55.7
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecc-cCCCCCcc-----cEEEe--cCCchHHHHHhHhCccccccCCCC---CC--cc
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGS-FLCDPSES-----AWSCM--FGDTEVPLQIIQEGVIRCEAPPRL---PG--KV 347 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~-----~~ac~--fG~~eV~~~Ll~~Ga~~c~~P~h~---~G--~v 347 (846)
+-..|..+|=.-++..||.+|.++|. |......+ .|-+. |...+ +....+++|.+||=. .. .|
T Consensus 177 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~di~VrF~e~~We~~~~f~~~D----vh~Q~AIvf~TPpY~~~I~~pV~V 252 (275)
T 1gji_A 177 AELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLDNWEAKGSFSQAD----VHRQVAIVFRTPPFLRDITEPITV 252 (275)
T ss_dssp SCCCEEEESCSEEETTCCCEEEEEESCCCGGGCEEEEEETTEEEECBCCGGG----EETTTEEEEECCCCSSCCSSCEEE
T ss_pred CCCEEEEeeCCccccCCCCEEEEEecccccCCCEEEEEccceeeccccChhh----hcceeeEEEeCCCCCcCCCCCEEE
Confidence 45679999999999999999999985 43322222 16543 44444 345588999999832 12 22
Q ss_pred eeEEeecCCcccceeeeeeecc
Q 044976 348 TLCITSGNRESCSEVKEFDYRV 369 (846)
Q Consensus 348 pL~vA~~~~~~~sev~~Fey~~ 369 (846)
-+++---....+|+...|+|..
T Consensus 253 ~iqL~r~sd~~~Sep~~FtY~P 274 (275)
T 1gji_A 253 KMQLRRPSDQEVSEPMDFRYLP 274 (275)
T ss_dssp EEEEEEGGGTEECCCEEEEEEC
T ss_pred EEEEEcCCCCCccCCcCcEEcC
Confidence 2344332223699999999964
No 168
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=25.00 E-value=86 Score=33.39 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=55.3
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecc-cCCCCCcc----------cEEE--ecCCchHHHHHhHhCccccccCCCC----
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGS-FLCDPSES----------AWSC--MFGDTEVPLQIIQEGVIRCEAPPRL---- 343 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~----------~~ac--~fG~~eV~~~Ll~~Ga~~c~~P~h~---- 343 (846)
+-..|..+|-.-++..||.+|.++|. |......+ .|-. .|...+ +-...++++.+||=.
T Consensus 208 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~E~~~~g~~WE~~g~f~~~D----vh~Q~AIvfkTPpY~~~~I 283 (325)
T 1nfk_A 208 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTD----VHRQFAIVFKTPKYKDVNI 283 (325)
T ss_dssp CCCCEEEESCSCEESSCCCEEEEEESCCCTTTEEEEEEECCCSSCCEEEECBCCGGG----BCTTSEEEEECCCTTSSCC
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEEEeCCCCCeeEEeeeeCHHH----ccceeEEEEECCCCCCCCc
Confidence 44589999999999999999999985 33222211 1543 233223 334578999999822
Q ss_pred CC--cceeEEeecCCcccceeeeeeeccC
Q 044976 344 PG--KVTLCITSGNRESCSEVKEFDYRVK 370 (846)
Q Consensus 344 ~G--~vpL~vA~~~~~~~sev~~Fey~~~ 370 (846)
.. .|-+++--.....+|+...|+|...
T Consensus 284 ~~pV~V~iqL~r~sd~~~Sep~~FtY~P~ 312 (325)
T 1nfk_A 284 TKPASVFVQLRRKSDLETSEPKPFLYYPE 312 (325)
T ss_dssp CSSEEEEEEEEETTTCCBCCCEEEEEECC
T ss_pred CCCeEEEEEEEcCCCCCccCCccceeecC
Confidence 22 3333443322237999999999874
No 169
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=23.90 E-value=57 Score=34.15 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=54.8
Q ss_pred CceEEEEecCCCCCCCCCeEEEEecc-cCCCCCccc-----EEEecCCchHHHHHhHhCccccccCCCC------CCcce
Q 044976 281 QKFAIREISPDWGYANESTKVIIVGS-FLCDPSESA-----WSCMFGDTEVPLQIIQEGVIRCEAPPRL------PGKVT 348 (846)
Q Consensus 281 ~~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~-----~ac~fG~~eV~~~Ll~~Ga~~c~~P~h~------~G~vp 348 (846)
+-..|..+|-.-++..||.+|.++|. |.+....+. |-. +|++. ...+-...+++|.+||=. +=.|-
T Consensus 189 ~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~dikV~F~e~~WE~-~~~f~-~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~ 266 (288)
T 2v2t_A 189 SELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWEG-RADFS-QADVHRQIAIVFKTPPYEDLEISEPVTVN 266 (288)
T ss_dssp SCCCBCCCSCSCCCSSCCCEEEEEBSSCCTTSEEEEEECSSCEE-ECCCC-GGGEETTTEEEEECCCCTTCCCSSCCBCC
T ss_pred CCCeEEEeeCCccccCCCCEEEEEecccccCCCEEEEEecceEE-eeEeC-hhhccceeEEEEECCCCCCCCcCCCeEEE
Confidence 44689999999999999999999885 443332211 432 22221 112334567999999722 33444
Q ss_pred eEEeecCCcccceeeeeeecc
Q 044976 349 LCITSGNRESCSEVKEFDYRV 369 (846)
Q Consensus 349 L~vA~~~~~~~sev~~Fey~~ 369 (846)
+++--.....+|+...|+|..
T Consensus 267 iqL~r~sd~~~Sep~~FtY~P 287 (288)
T 2v2t_A 267 VFLQRLTDGVCSEPLPFTYLP 287 (288)
T ss_dssp EEEEETTTCCBCCCBCCBCCC
T ss_pred EEEEeCCCCCcCCCcCcEEcC
Confidence 555542223689999999964
No 170
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=22.34 E-value=62 Score=21.08 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q 044976 692 AALSIQKKYRGWKGRKD 708 (846)
Q Consensus 692 aAi~IQ~~~R~~~~Rk~ 708 (846)
||..|+..||..+.|+.
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 67788888888888776
No 171
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.05 E-value=60 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=22.6
Q ss_pred EeeecccCCCCccceeeeeccCCCCCceEEEe
Q 044976 93 NCYYAHGEQNPNFQRRSYWMLDPAYEHIVLVH 124 (846)
Q Consensus 93 ~~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvh 124 (846)
-+|-+|--..-+-.||-||.||. ..|.|-+
T Consensus 11 eGW~VH~t~~d~~rKRHYWrLD~--K~Itlf~ 40 (125)
T 2coa_A 11 EGWVVHYSNKDTLRKRHYWRLDC--KCITLFQ 40 (125)
T ss_dssp EEEEEECCSSSCCCEEEEEEECS--SEEEEES
T ss_pred cceEEEEccCCccccceeeEecC--CeEEEEe
Confidence 47788877666778999999997 3566643
No 172
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=20.27 E-value=40 Score=36.81 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=51.5
Q ss_pred eEEEEecccCCCCCcccEEEecCCchHHHHHhHhCccccccCCC-----------CCCcceeEEeecCCcccceeeeeee
Q 044976 299 TKVIIVGSFLCDPSESAWSCMFGDTEVPLQIIQEGVIRCEAPPR-----------LPGKVTLCITSGNRESCSEVKEFDY 367 (846)
Q Consensus 299 tkVlI~G~f~~~~~~~~~ac~fG~~eV~~~Ll~~Ga~~c~~P~h-----------~~G~vpL~vA~~~~~~~sev~~Fey 367 (846)
.-|-+.|..+... +.+.||++++-+..-..-.+.|..|.- .+-.|||.+--..|..-+.-+.|.|
T Consensus 343 amlEl~G~nF~~~----L~VWFG~v~aeT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi~LVR~DGviy~t~~tfty 418 (422)
T 3iag_C 343 AMLELTGQNFTPN----LRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTSLTFTY 418 (422)
T ss_dssp CEEEEEEESCCTT----EEEEETTEECCEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEEEEEETTSEEEEEEEEEEE
T ss_pred eEEEEEccCCCCC----ceEEECCCCceeEEeccceEEEeCCCHHHhccCccccCCceEEEEEEEecCCEEeeCCccEEe
Confidence 4567888655443 999999999887777777799998861 2457888888888877788888888
Q ss_pred ccC
Q 044976 368 RVK 370 (846)
Q Consensus 368 ~~~ 370 (846)
...
T Consensus 419 ~pe 421 (422)
T 3iag_C 419 TPE 421 (422)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
Done!