BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044977
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 69/99 (69%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
WT++ED + E + +GT+ W++IA K + +QCR RW+ +LN + KK W+ EED +
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRI 69
Query: 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
+ EA K+ GNRW EIAK++ GRTDNAVKN +++ K++
Sbjct: 70 IFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 66/99 (66%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
WT++ED + E + +G + WS IA K + +QCR RW+ +LN + KK W+ EED +
Sbjct: 30 WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 89
Query: 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
+ +A K GNRW EIAK++ GRTDNAVKN +++ +++
Sbjct: 90 IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 67/99 (67%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
WT++ED + + + +G + WS+IA K + +QCR RW+ +LN + KK W+ EED +
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66
Query: 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
+ +A K GNRW EIAK++ GRTDNA+KN +++ +++
Sbjct: 67 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 70 DFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
+ KG W+ EED + + + +G RW+ IAK + GR + R+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 46
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 67/99 (67%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
WT++ED + + + +G + WS+IA K + +QCR RW+ +LN + KK W+ EED +
Sbjct: 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 120
Query: 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
+ +A K GNRW EIAK++ GRTDNA+KN +++ +++
Sbjct: 121 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 67/98 (68%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDML 83
WT++ED + + + +G + WS+IA K + +QCR RW+ +LN + KK W+ EED +
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 66
Query: 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121
+ +A K GNRW EIAK++ GRTDNA+KN +++ +++
Sbjct: 67 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 131
KG W+ EED + + + +G RW+ IAK + GR + R+ K + +E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 132 N 132
+
Sbjct: 64 D 64
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 25 TQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLL 84
T+ EDD++RE + +G +NW I S +++ +QCR RW+ +L+ K W+PEED +
Sbjct: 6 TEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETI 65
Query: 85 CEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130
G++W+ IAK++ GRTDNA+KNR+++ KR + KE
Sbjct: 66 FRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%)
Query: 22 VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEED 81
V +T++ED L++ + +G ++W I+ + RQCR RW Y+N + WSPEED
Sbjct: 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61
Query: 82 MLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125
MLL + +G +W +I+K + R+DN ++NR+ + + RAK++
Sbjct: 62 MLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 8 IGSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67
+ N ++ KK++ T +ED++L+ ++ HG++ W +IA+ F ++ RQCR RW YL
Sbjct: 2 VQVNLKAAKKQKF----TPEEDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYL 56
Query: 68 NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120
W+ EED LL + + +G +W IAK GRTD +KNR+ T+ K
Sbjct: 57 APSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 70 DFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
+ KK W+ EED +L +A K GNRW EIAK++ GRTDNA+KN +++ +++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 71 FKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122
KK W+ EED ++ +A K GNRW EIAK++ GRTDNA+KN +++ +++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWS 77
W ED+IL+ + +G WS IAS K+ +QC+ RWY +L+ KK WS
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
WT++ED + E + +G + WS+IA K + +QCR RW+ +LN +
Sbjct: 6 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
KG W+ EED + E + +G RW+ IAK + GR + R+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
WT++ED L + + +G + WS+IA K + +QCR RW+ +LN +
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
KG W+ EED L + + +G RW+ IAK + GR + R+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
WT++ED + + + +G + WS+IA K + +QCR RW+ +LN +
Sbjct: 6 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRF 114
KG W+ EED + + + +G RW+ IAK + GR + R+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 22 VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
V WT +ED+ LR + G ++W +AS F ++T +QC+ RW L+
Sbjct: 9 VKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
WT++ED+ L++ + +GT++W +IA+ ++T QC+ RW LN +
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70
WT++ED+ L++ + +GT++W +IA+ ++T QC+ RW LN +
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1OUT|B Chain B, Trout Hemoglobin I
pdb|1OUU|B Chain B, Carbonmonoxy Trout Hemoglobin I
pdb|1OUU|D Chain D, Carbonmonoxy Trout Hemoglobin I
Length = 146
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 99 AKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN-NNAYINPNNKRIL-------FQNGFG 150
KVV G D AVKN + L A Y++L++ + N +++P+N R+L FG
Sbjct: 64 GKVVCGALDKAVKNMGNIL----ATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFG 119
Query: 151 TDGTPENAAPVKK 163
TPE A +K
Sbjct: 120 ASFTPEIQATWQK 132
>pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|D Chain D, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 94
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 17 KERHIVT-WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWY-TYLNSDFK 72
K+R ++ W++QE + RE+ H +N+ +IAS + KT +C +Y T N ++K
Sbjct: 38 KDRQVMNMWSEQEKETFREKFMQH-PKNFGLIASFLERKTVAECVLYYYLTKKNENYK 94
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKN 112
W+ EE L + FG RWT+I+K++ RT VK+
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKS 48
>pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation
Domain
Length = 71
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 17 KERHIVT-WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWY-TYLNSDFK 72
K+R ++ W++QE + RE+ H +N+ +IAS + KT +C +Y T N ++K
Sbjct: 15 KDRQVMNMWSEQEKETFREKFMQH-PKNFGLIASFLERKTVAECVLYYYLTKKNENYK 71
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68
+WT QE+ L E + G NW +A++ KT +C + + Y +
Sbjct: 10 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66
S ++ + WT++E ++ + HG NWS IA KT QC+ ++ Y
Sbjct: 9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 24 WTQQEDDILREQISIHGTENWS--IIASKFKDKTTRQCRRRWYT 65
W +ED LR + +G NWS ++ KF ++T+ + RW T
Sbjct: 6 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 49
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 24 WTQQEDDILREQISIHGTENWS--IIASKFKDKTTRQCRRRWYT 65
W +ED LR + +G NWS ++ KF ++T+ + RW T
Sbjct: 5 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 15 KKKERHIVTWTQQEDDILREQISIHGTENWS--IIASKFKDKTTRQCRRRWYT 65
K + R W +ED LR + +G NWS ++ KF ++T+ + RW T
Sbjct: 5 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 57
>pdb|3R1M|A Chain A, Strucure Of Bifunctional Fructose 1,6-Bisphosphate
AldolasePHOSPHATASE (ALDOLASE FORM)
Length = 385
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 160 PVKKVRRAH-IPDLTENCNFENRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKYHDA 218
PV VR H +P L E H G H P +P DA
Sbjct: 235 PVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHY-GPL------------MPVSQRDA 281
Query: 219 KEVSNDGEPLLQGF-WNSQNNKTQGTFLKKDDPKITALIQQAELLSSLAQKVN------T 271
K DG P L G +N +N + G DDP + A +++ ++
Sbjct: 282 KATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRL 341
Query: 272 ESTEQSLENAWKVLQDFLNR-SKENDILRCK 301
E TE +L+ +R KE+D+ + K
Sbjct: 342 EPTEMEYTTLPLILEKLKDRFKKESDVYKAK 372
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 15 KKKERHIVTWTQQEDDILREQISIHGTENWS--IIASKFKDKTTRQCRRRWYT 65
K + R W +ED LR + +G NWS ++ KF ++T+ + RW T
Sbjct: 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 76 WSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKEN 131
W+ EE LL +A K + RW +IA+ V GRT R+ L + +A ++
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQEQV 65
Query: 132 NNA 134
NA
Sbjct: 66 LNA 68
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 287 DFLNRSKENDILRCKISDIDLQLE--DFKDLIEDLRS---SNDESRSSWRHPDLFEDSPA 341
D+L R+ E L I+D LE DF D IE ++S ++ E + + + P E S
Sbjct: 762 DYLKRANE---LVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSEL 818
Query: 342 SSEYSTGST---LIPR-----PAGDTTDQIDAELSALHQA 373
+ Y++ T LI R PAG T ++ID+ SAL +A
Sbjct: 819 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKA 858
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 287 DFLNRSKENDILRCKISDIDLQLE--DFKDLIEDLRS---SNDESRSSWRHPDLFEDSPA 341
D+L R+ E L I+D LE DF D IE ++S ++ E + + + P E S
Sbjct: 770 DYLKRANE---LVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSEL 826
Query: 342 SSEYSTGST---LIPR-----PAGDTTDQIDAELSALHQA 373
+ Y++ T LI R PAG T ++ID+ SAL +A
Sbjct: 827 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKA 866
>pdb|2WZR|1 Chain 1, The Structure Of Foot And Mouth Disease Virus Serotype
Sat1
Length = 219
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 127 LAKENNNAYIN--PNNKRILFQNG-----FGTDGTPENAAPVKKVRRAHIPDLTENCNFE 179
+A NA++ PN +L + G F GT A P R +C +
Sbjct: 79 VACVGTNAWVGWTPNGSPVLTEVGDNPVVFSRRGTTRFALPYTAPHRVLATVYNGDCKY- 137
Query: 180 NRSHRQSGTAANQHLRSPFTVLPQNFPSITHLPAKY 215
+ +GTA +++R L S TH+P +
Sbjct: 138 ----KPTGTAPRENIRGDLATLAARIASETHIPTTF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,063,877
Number of Sequences: 62578
Number of extensions: 597559
Number of successful extensions: 1075
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 45
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)