Query 044977
Match_columns 479
No_of_seqs 221 out of 1397
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 08:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 3.6E-34 7.8E-39 276.2 11.4 111 16-126 4-115 (238)
2 PLN03212 Transcription repress 100.0 2.4E-31 5.2E-36 259.2 12.3 111 16-126 20-131 (249)
3 PLN03091 hypothetical protein; 100.0 7.9E-30 1.7E-34 264.0 13.4 112 15-126 8-120 (459)
4 KOG0049 Transcription factor, 99.7 6.3E-18 1.4E-22 181.4 7.4 119 21-139 305-427 (939)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2E-15 4.2E-20 116.5 7.0 60 24-84 1-60 (60)
6 KOG0049 Transcription factor, 99.6 3.5E-15 7.6E-20 160.6 8.1 96 17-112 356-452 (939)
7 COG5147 REB1 Myb superfamily p 99.6 4.1E-15 9E-20 158.3 7.1 110 14-123 13-122 (512)
8 KOG0050 mRNA splicing protein 99.5 1.6E-14 3.4E-19 152.7 5.4 105 19-124 5-109 (617)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.4 1.9E-13 4.2E-18 105.4 3.1 59 76-134 1-59 (60)
10 PF00249 Myb_DNA-binding: Myb- 99.3 7.5E-13 1.6E-17 98.9 4.3 47 21-67 1-48 (48)
11 PLN03212 Transcription repress 99.3 7.5E-13 1.6E-17 130.2 4.2 81 51-138 10-92 (249)
12 PF00249 Myb_DNA-binding: Myb- 99.3 3.3E-12 7.1E-17 95.4 4.9 46 73-118 1-48 (48)
13 KOG0051 RNA polymerase I termi 99.3 1E-11 2.2E-16 134.3 8.4 102 20-123 383-512 (607)
14 KOG0048 Transcription factor, 99.2 2.8E-12 6E-17 124.5 3.3 70 69-138 5-76 (238)
15 PLN03091 hypothetical protein; 99.2 1.2E-11 2.6E-16 129.7 3.4 72 68-139 9-82 (459)
16 smart00717 SANT SANT SWI3, AD 99.1 6.5E-11 1.4E-15 84.6 5.1 47 73-119 1-48 (49)
17 smart00717 SANT SANT SWI3, AD 99.0 3.3E-10 7.1E-15 81.0 5.5 48 21-68 1-48 (49)
18 KOG0051 RNA polymerase I termi 99.0 8.4E-11 1.8E-15 127.3 3.4 123 19-144 306-456 (607)
19 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 6.3E-10 1.4E-14 78.6 5.0 43 75-117 1-44 (45)
20 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.7E-09 3.7E-14 76.4 5.1 45 23-67 1-45 (45)
21 COG5147 REB1 Myb superfamily p 98.2 3.5E-07 7.6E-12 98.5 -0.1 98 20-119 290-397 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.6 0.00011 2.3E-09 58.3 5.4 49 19-67 1-54 (57)
23 KOG0050 mRNA splicing protein 97.6 3.3E-05 7.1E-10 83.3 3.1 66 71-136 5-71 (617)
24 KOG0457 Histone acetyltransfer 97.5 9E-05 2E-09 78.5 4.3 48 21-68 72-119 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00054 1.2E-08 54.3 5.3 47 73-119 3-55 (57)
26 PF13325 MCRS_N: N-terminal re 97.2 0.0019 4E-08 62.9 8.9 97 23-121 1-129 (199)
27 KOG0457 Histone acetyltransfer 97.2 0.00046 1E-08 73.3 5.1 48 71-118 70-118 (438)
28 TIGR02894 DNA_bind_RsfA transc 96.8 0.0014 3.1E-08 61.8 4.4 53 72-125 3-62 (161)
29 PF13837 Myb_DNA-bind_4: Myb/S 96.6 0.0023 4.9E-08 52.4 3.5 48 73-120 1-66 (90)
30 KOG1279 Chromatin remodeling f 96.5 0.0025 5.4E-08 69.4 4.5 45 73-117 253-297 (506)
31 COG5259 RSC8 RSC chromatin rem 96.4 0.0027 5.8E-08 68.3 3.7 45 73-117 279-323 (531)
32 PF08914 Myb_DNA-bind_2: Rap1 96.2 0.0053 1.2E-07 49.9 3.9 50 21-70 2-60 (65)
33 COG5259 RSC8 RSC chromatin rem 96.2 0.0048 1E-07 66.4 4.1 44 21-65 279-322 (531)
34 PF13837 Myb_DNA-bind_4: Myb/S 96.1 0.0045 9.9E-08 50.6 3.0 45 21-65 1-62 (90)
35 KOG1279 Chromatin remodeling f 95.9 0.0083 1.8E-07 65.4 4.7 48 17-65 249-296 (506)
36 PRK13923 putative spore coat p 95.5 0.014 3.1E-07 55.7 4.0 53 71-124 3-62 (170)
37 PF08914 Myb_DNA-bind_2: Rap1 95.4 0.02 4.3E-07 46.6 4.0 49 73-121 2-60 (65)
38 PLN03142 Probable chromatin-re 95.2 0.086 1.9E-06 62.0 9.7 100 22-121 825-987 (1033)
39 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.067 1.4E-06 43.3 5.8 48 73-120 2-71 (78)
40 COG5114 Histone acetyltransfer 94.8 0.022 4.7E-07 59.3 3.1 46 23-68 65-110 (432)
41 TIGR02894 DNA_bind_RsfA transc 94.6 0.022 4.8E-07 54.0 2.5 48 20-68 3-56 (161)
42 COG5114 Histone acetyltransfer 94.3 0.042 9.1E-07 57.3 3.8 47 73-119 63-110 (432)
43 PF13873 Myb_DNA-bind_5: Myb/S 94.1 0.041 8.9E-07 44.5 2.7 47 21-67 2-69 (78)
44 PRK13923 putative spore coat p 92.0 0.096 2.1E-06 50.1 2.2 48 20-68 4-57 (170)
45 KOG2656 DNA methyltransferase 91.1 0.29 6.2E-06 52.3 4.8 50 74-123 131-186 (445)
46 PF09111 SLIDE: SLIDE; InterP 90.1 0.49 1.1E-05 42.7 4.7 51 70-120 46-112 (118)
47 PF12776 Myb_DNA-bind_3: Myb/S 87.7 1.2 2.7E-05 36.8 5.2 46 75-120 1-64 (96)
48 KOG4282 Transcription factor G 86.9 0.91 2E-05 46.5 4.9 47 74-120 55-115 (345)
49 KOG1194 Predicted DNA-binding 86.8 2 4.3E-05 47.0 7.4 49 73-121 187-235 (534)
50 COG5118 BDP1 Transcription ini 81.6 1.8 4E-05 46.4 4.4 46 74-119 366-411 (507)
51 PF08281 Sigma70_r4_2: Sigma-7 80.5 2.7 5.9E-05 31.5 3.9 41 78-119 12-52 (54)
52 KOG4282 Transcription factor G 80.3 2 4.3E-05 44.2 4.1 46 21-66 54-112 (345)
53 COG5118 BDP1 Transcription ini 77.5 3.4 7.4E-05 44.4 4.8 46 19-65 363-408 (507)
54 PF09111 SLIDE: SLIDE; InterP 75.3 3.7 8E-05 37.1 3.8 47 18-64 46-107 (118)
55 PF12776 Myb_DNA-bind_3: Myb/S 71.4 6.8 0.00015 32.4 4.3 43 23-65 1-60 (96)
56 KOG4167 Predicted DNA-binding 68.6 40 0.00087 39.3 10.7 43 74-116 620-662 (907)
57 PF11626 Rap1_C: TRF2-interact 64.8 6.8 0.00015 33.1 3.0 29 18-49 44-80 (87)
58 PF13404 HTH_AsnC-type: AsnC-t 57.8 20 0.00042 26.7 4.1 38 79-117 3-41 (42)
59 PF04545 Sigma70_r4: Sigma-70, 56.5 24 0.00052 26.2 4.4 41 79-120 7-47 (50)
60 KOG4468 Polycomb-group transcr 56.3 16 0.00034 41.6 4.7 53 73-125 88-150 (782)
61 smart00872 Alpha-mann_mid Alph 56.2 14 0.0003 30.3 3.4 59 244-305 11-71 (79)
62 PF09261 Alpha-mann_mid: Alpha 54.7 7.2 0.00016 32.1 1.5 59 244-305 12-72 (80)
63 PF13325 MCRS_N: N-terminal re 53.7 19 0.00041 35.6 4.4 44 75-119 1-47 (199)
64 KOG4167 Predicted DNA-binding 53.1 17 0.00037 42.2 4.5 46 19-65 617-662 (907)
65 PF13404 HTH_AsnC-type: AsnC-t 51.7 24 0.00051 26.3 3.7 38 27-65 3-40 (42)
66 TIGR02985 Sig70_bacteroi1 RNA 51.0 27 0.00058 30.3 4.5 37 83-120 120-156 (161)
67 smart00595 MADF subfamily of S 49.8 14 0.00031 30.2 2.5 25 95-120 30-54 (89)
68 PRK11179 DNA-binding transcrip 46.5 31 0.00067 31.5 4.4 43 78-121 8-51 (153)
69 PRK09819 alpha-mannosidase; Pr 45.6 34 0.00074 39.9 5.5 58 245-305 290-348 (875)
70 KOG2900 Biotin synthase [Coenz 44.0 24 0.00052 36.8 3.5 176 253-463 114-329 (380)
71 PF07750 GcrA: GcrA cell cycle 43.9 22 0.00047 33.7 3.0 41 75-116 2-42 (162)
72 KOG4468 Polycomb-group transcr 42.9 80 0.0017 36.3 7.5 79 20-116 87-175 (782)
73 PRK11169 leucine-responsive tr 41.1 35 0.00076 31.6 3.9 44 78-122 13-57 (164)
74 KOG2009 Transcription initiati 41.1 31 0.00066 39.1 4.0 49 72-120 408-456 (584)
75 smart00595 MADF subfamily of S 40.5 18 0.0004 29.5 1.8 22 43-65 29-50 (89)
76 TIGR02937 sigma70-ECF RNA poly 39.4 53 0.0011 27.5 4.5 35 85-120 119-153 (158)
77 PF11035 SnAPC_2_like: Small n 38.2 2.3E+02 0.0049 30.4 9.5 87 20-119 20-127 (344)
78 PF11626 Rap1_C: TRF2-interact 37.4 31 0.00067 29.1 2.7 17 69-85 43-59 (87)
79 PF11035 SnAPC_2_like: Small n 37.4 85 0.0019 33.4 6.3 47 74-120 22-72 (344)
80 PRK11179 DNA-binding transcrip 37.0 42 0.00092 30.6 3.7 43 27-70 9-51 (153)
81 PF10545 MADF_DNA_bdg: Alcohol 33.7 33 0.00072 27.0 2.2 26 95-120 29-55 (85)
82 PRK09652 RNA polymerase sigma 32.8 82 0.0018 28.0 4.8 33 87-120 139-171 (182)
83 PF01388 ARID: ARID/BRIGHT DNA 32.2 79 0.0017 26.2 4.3 37 83-119 40-89 (92)
84 PRK11169 leucine-responsive tr 31.1 47 0.001 30.7 3.1 45 26-71 13-57 (164)
85 PRK11924 RNA polymerase sigma 31.0 87 0.0019 27.7 4.6 30 90-120 139-168 (179)
86 PF04504 DUF573: Protein of un 30.3 75 0.0016 27.7 4.0 47 74-120 5-64 (98)
87 smart00501 BRIGHT BRIGHT, ARID 28.8 86 0.0019 26.3 4.0 38 83-120 36-86 (93)
88 KOG1766 Enhancer of rudimentar 28.6 41 0.0009 30.1 2.1 46 270-315 21-67 (104)
89 KOG1194 Predicted DNA-binding 28.2 76 0.0017 35.3 4.4 44 20-64 186-229 (534)
90 PRK09643 RNA polymerase sigma 28.0 1.1E+02 0.0023 28.6 4.8 35 85-120 143-177 (192)
91 KOG4329 DNA-binding protein [G 27.9 2.5E+02 0.0053 30.8 7.9 56 74-130 278-334 (445)
92 KOG1316 Argininosuccinate lyas 27.8 26 0.00056 37.8 0.8 15 342-356 274-288 (464)
93 PF07638 Sigma70_ECF: ECF sigm 27.4 1.1E+02 0.0024 28.6 4.8 37 82-119 141-177 (185)
94 KOG2656 DNA methyltransferase 26.7 36 0.00079 37.0 1.7 47 20-67 129-181 (445)
95 PRK12546 RNA polymerase sigma 26.1 1.6E+02 0.0034 27.7 5.6 35 86-121 123-157 (188)
96 PRK09641 RNA polymerase sigma 25.8 1.2E+02 0.0026 27.4 4.7 30 90-120 150-179 (187)
97 cd06171 Sigma70_r4 Sigma70, re 25.4 1.5E+02 0.0032 20.5 4.2 40 76-117 11-50 (55)
98 PF09420 Nop16: Ribosome bioge 24.9 1.3E+02 0.0029 28.1 4.9 47 19-66 112-162 (164)
99 PRK09047 RNA polymerase factor 24.2 1.5E+02 0.0033 26.0 5.0 33 87-120 117-149 (161)
100 PRK09642 RNA polymerase sigma 23.1 1.7E+02 0.0036 26.0 5.0 33 87-120 117-149 (160)
101 TIGR02939 RpoE_Sigma70 RNA pol 23.0 1.2E+02 0.0026 27.5 4.1 28 92-120 154-181 (190)
102 TIGR02954 Sig70_famx3 RNA poly 23.0 1.5E+02 0.0032 26.7 4.6 29 91-120 134-162 (169)
103 PRK09413 IS2 repressor TnpA; R 23.0 2.8E+02 0.0061 24.5 6.4 46 20-68 9-54 (121)
104 cd08319 Death_RAIDD Death doma 22.4 91 0.002 26.6 3.0 29 81-110 2-30 (83)
105 TIGR02943 Sig70_famx1 RNA poly 22.4 1.6E+02 0.0035 27.4 4.9 36 84-120 139-174 (188)
106 TIGR02948 SigW_bacill RNA poly 22.3 1.2E+02 0.0026 27.3 4.0 28 92-120 152-179 (187)
107 PRK12523 RNA polymerase sigma 21.8 1.5E+02 0.0032 26.8 4.5 37 83-120 126-162 (172)
108 PRK12530 RNA polymerase sigma 21.7 1.7E+02 0.0036 27.2 4.9 30 90-120 148-177 (189)
109 PRK12515 RNA polymerase sigma 21.7 1.7E+02 0.0037 26.9 4.9 30 90-120 145-174 (189)
110 smart00344 HTH_ASNC helix_turn 21.6 1.6E+02 0.0035 24.7 4.4 42 79-121 3-45 (108)
111 PRK09645 RNA polymerase sigma 21.5 1.8E+02 0.0038 26.2 4.9 30 90-120 132-161 (173)
112 PRK09637 RNA polymerase sigma 21.5 1.6E+02 0.0035 27.2 4.8 30 90-120 120-149 (181)
113 COG0165 ArgH Argininosuccinate 21.4 42 0.00091 37.1 0.9 26 343-368 272-298 (459)
114 PRK12512 RNA polymerase sigma 20.9 1.6E+02 0.0034 26.9 4.5 30 90-120 145-174 (184)
115 KOG0384 Chromodomain-helicase 20.9 56 0.0012 40.2 1.9 29 20-48 1132-1160(1373)
116 PRK12529 RNA polymerase sigma 20.6 1.9E+02 0.0041 26.5 4.9 34 87-121 138-171 (178)
117 PLN03142 Probable chromatin-re 20.6 1.5E+02 0.0032 36.0 5.2 45 74-118 825-870 (1033)
118 PRK04217 hypothetical protein; 20.4 1.7E+02 0.0037 26.3 4.4 44 75-120 42-85 (110)
119 PF03980 Nnf1: Nnf1 ; InterPr 20.4 60 0.0013 28.1 1.5 57 276-332 2-62 (109)
120 PRK11923 algU RNA polymerase s 20.3 1.7E+02 0.0037 26.8 4.6 28 92-120 154-181 (193)
121 PRK09648 RNA polymerase sigma 20.2 1.9E+02 0.0042 26.5 4.9 30 90-120 153-182 (189)
122 KOG2009 Transcription initiati 20.2 93 0.002 35.4 3.3 49 16-65 404-452 (584)
123 PRK12531 RNA polymerase sigma 20.0 1.9E+02 0.0042 26.8 4.9 29 91-120 156-184 (194)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=3.6e-34 Score=276.24 Aligned_cols=111 Identities=35% Similarity=0.560 Sum_probs=104.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR 94 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gnr 94 (479)
|+...+|+||+|||++|+++|+.||.++|..||+.++ +|++|+||+||.|||+|++++|.||+|||.+|+++|..+||+
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr 83 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR 83 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence 3334579999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977 95 WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126 (479)
Q Consensus 95 WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~ 126 (479)
|+.||++|||||+|+|||+|++.++|+.....
T Consensus 84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988876544
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=2.4e-31 Score=259.15 Aligned_cols=111 Identities=32% Similarity=0.626 Sum_probs=104.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNR 94 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gnr 94 (479)
|...++++||+|||++|+++|++||..+|..||+.++ +|+++|||+||.+||+|.+++++||+|||++|+++|..||++
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence 4557899999999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977 95 WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126 (479)
Q Consensus 95 WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~ 126 (479)
|+.||++|||||+++|||||+.+++++.+...
T Consensus 100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999998765543
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.96 E-value=7.9e-30 Score=264.02 Aligned_cols=112 Identities=33% Similarity=0.661 Sum_probs=106.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN 93 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn 93 (479)
-|.+.++++||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.+||+|.+++++||+|||.+|+++|++||+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 45678889999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred chhhhchhcCCCChhHHHHHHHHHhhhhhhhhh
Q 044977 94 RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEA 126 (479)
Q Consensus 94 rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~ 126 (479)
+|++||++|||||+++|||||+.+++|+.+...
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~ 120 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998776543
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.72 E-value=6.3e-18 Score=181.40 Aligned_cols=119 Identities=23% Similarity=0.485 Sum_probs=110.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chh
Q 044977 21 IVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWT 96 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWs 96 (479)
...||+|||.+|+.+|.+...+ +|.+|-.+|+||+..|...||...|+|.+++|+||++||.+|+.+|.+||. .|.
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~ 384 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWA 384 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchh
Confidence 3679999999999999988654 799999999999999999999999999999999999999999999999996 599
Q ss_pred hhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 97 EIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 97 kIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
+|-..||||++.|||.||.+.|..++|.+.|+..++..++..+
T Consensus 385 k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V 427 (939)
T KOG0049|consen 385 KVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAV 427 (939)
T ss_pred hHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHH
Confidence 9999999999999999999999999999999988776665443
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.60 E-value=2e-15 Score=116.46 Aligned_cols=60 Identities=38% Similarity=0.847 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHH
Q 044977 24 WTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLL 84 (479)
Q Consensus 24 WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelL 84 (479)
||+|||++|+++|..||. +|..||+.|+.|++.+|+.||.++|+|.+++++||++||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999994 899999999889999999999999999999999999999986
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.57 E-value=3.5e-15 Score=160.59 Aligned_cols=96 Identities=27% Similarity=0.516 Sum_probs=90.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFG-NRW 95 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~G-nrW 95 (479)
+..+.|+||.+||.+|..+|.+||...|.+|-..+|+|+..|||+||+|.|+...+++.||-.||+.|+.++.+|| ++|
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~W 435 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNW 435 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred hhhchhcCCCChhHHHH
Q 044977 96 TEIAKVVSGRTDNAVKN 112 (479)
Q Consensus 96 skIAk~LPGRTdnqcKN 112 (479)
.+||..||.||..|...
T Consensus 436 akcA~~Lp~~t~~q~~r 452 (939)
T KOG0049|consen 436 AKCAMLLPKKTSRQLRR 452 (939)
T ss_pred HHHHHHccccchhHHHH
Confidence 99999999999955433
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.55 E-value=4.1e-15 Score=158.32 Aligned_cols=110 Identities=30% Similarity=0.518 Sum_probs=104.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044977 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN 93 (479)
Q Consensus 14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn 93 (479)
....+++.|.|+..||+.|..+|+.+|..+|+.||..+..|+++||+.||+++++|.+++..|+.+||..|+.+...+|.
T Consensus 13 ~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~ 92 (512)
T COG5147 13 LMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92 (512)
T ss_pred cccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence 36677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977 94 RWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123 (479)
Q Consensus 94 rWskIAk~LPGRTdnqcKNRW~slLkKr~K 123 (479)
+|+.||..++|||..+|.+||...+....+
T Consensus 93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 999999999999999999999998876554
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.6e-14 Score=152.69 Aligned_cols=105 Identities=34% Similarity=0.631 Sum_probs=99.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEI 98 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskI 98 (479)
.+.|.|+.-||+.|..+|.+||...|+.|++.++.++++||+.||..+++|.+++..|+.+||+.|+.+.+.+...|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCChhHHHHHHHHHhhhhhhh
Q 044977 99 AKVVSGRTDNAVKNRFSTLCKKRAKY 124 (479)
Q Consensus 99 Ak~LPGRTdnqcKNRW~slLkKr~K~ 124 (479)
|..| |||.++|-.||++++.....+
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s~ 109 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVSY 109 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence 9999 999999999999988764433
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.38 E-value=1.9e-13 Score=105.37 Aligned_cols=59 Identities=32% Similarity=0.582 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhccc
Q 044977 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNA 134 (479)
Q Consensus 76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~ 134 (479)
||++||.+|+++|..||++|..||.+|+.||+.+|++||+..+++..+..+|+.+++..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~ 59 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQR 59 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhc
Confidence 99999999999999999999999999966999999999999888888899999888754
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.35 E-value=7.5e-13 Score=98.86 Aligned_cols=47 Identities=36% Similarity=0.724 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhcc
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYL 67 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L 67 (479)
|++||+|||++|+++|..||.++|..||..|+ +||+.||+.||.+++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 57999999999999999999888999999999 999999999999875
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.33 E-value=7.5e-13 Score=130.18 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=70.5
Q ss_pred cCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchhc-CCCChhHHHHHHHHHhhhhhhhhhhh
Q 044977 51 FKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVV-SGRTDNAVKNRFSTLCKKRAKYEALA 128 (479)
Q Consensus 51 lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~L-PGRTdnqcKNRW~slLkKr~K~~~wt 128 (479)
++.|+..-|. ++.+++++||+|||++|+++|++|| ++|..||+.+ +|||+.|||.||.++|++.+++++|+
T Consensus 10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence 4455554442 4578899999999999999999999 5899999998 69999999999999999999999999
Q ss_pred hhhcccccCC
Q 044977 129 KENNNAYINP 138 (479)
Q Consensus 129 kEEd~~lins 138 (479)
.+|+..++..
T Consensus 83 ~EED~lLlel 92 (249)
T PLN03212 83 SDEEDLILRL 92 (249)
T ss_pred hHHHHHHHHH
Confidence 9999877654
No 12
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.29 E-value=3.3e-12 Score=95.41 Aligned_cols=46 Identities=41% Similarity=0.774 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc-hhhhchhcC-CCChhHHHHHHHHHh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFSTLC 118 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gnr-WskIAk~LP-GRTdnqcKNRW~slL 118 (479)
|++||++||++|++++.+||.+ |..||..|| |||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998764
No 13
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.26 E-value=1e-11 Score=134.27 Aligned_cols=102 Identities=23% Similarity=0.513 Sum_probs=91.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCC--CCCCCCHHHHHHHHHHHH-------H
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDF--KKGGWSPEEDMLLCEAQK-------I 90 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~I--kKg~WT~EEDelLLelvk-------k 90 (479)
.+|.||+||++.|..++..|| +.|..|++.|+ |.+..||+||.+|..+.- +++.||-||.+.|+.+|. .
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q 460 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ 460 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999 48999999887 999999999999999884 899999999999999995 2
Q ss_pred h-------------------CCchhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977 91 F-------------------GNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123 (479)
Q Consensus 91 ~-------------------GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K 123 (479)
+ +-+|+.|++.+..|+.-+||.+|..++.....
T Consensus 461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~ 512 (607)
T KOG0051|consen 461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF 512 (607)
T ss_pred ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence 2 12599999999999999999999998876543
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.25 E-value=2.8e-12 Score=124.54 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=63.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcC-CCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCC
Q 044977 69 SDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVS-GRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINP 138 (479)
Q Consensus 69 P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LP-GRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins 138 (479)
|.+.+|+||+|||.+|+++|.+||. +|..||+.++ ||++.+||-||.++|++.+|++.|+.+|+..++..
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~l 76 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKL 76 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHH
Confidence 4455799999999999999999995 6999999998 99999999999999999999999999998766643
No 15
>PLN03091 hypothetical protein; Provisional
Probab=99.17 E-value=1.2e-11 Score=129.74 Aligned_cols=72 Identities=24% Similarity=0.448 Sum_probs=65.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchhc-CCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVV-SGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~L-PGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
+..++++.||+|||++|+++|.+|| ++|..||+.+ +|||+.|||.||.++|++.+++++|+++|+..++...
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~ 82 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH 82 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999999 4799999988 5999999999999999999999999999998877544
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.14 E-value=6.5e-11 Score=84.63 Aligned_cols=47 Identities=47% Similarity=0.831 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
+++||++||.+|+.++..|| ++|..||..|++||+.+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.05 E-value=3.3e-10 Score=80.96 Aligned_cols=48 Identities=38% Similarity=0.778 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
+++||++||.+|..++..||..+|..||..|++|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999997799999999999999999999998765
No 18
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.05 E-value=8.4e-11 Score=127.31 Aligned_cols=123 Identities=23% Similarity=0.370 Sum_probs=104.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHh----CC-------------------CChhhHhhhcCCCChhhhhh---hhhhccCCCCC
Q 044977 19 RHIVTWTQQEDDILREQISIH----GT-------------------ENWSIIASKFKDKTTRQCRR---RWYTYLNSDFK 72 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~----G~-------------------~nWs~IAk~lpgRT~kQCRe---RW~n~L~P~Ik 72 (479)
...+.|+.+||..|...|..| |- +-|+.|.+.||.|+.+..+. |-++.+.+ .
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~--~ 383 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFEN--K 383 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccc--c
Confidence 445789999999999999877 11 12788999999999888777 44445554 8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh--hhhhhhhhhhcccccCCCCcccc
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR--AKYEALAKENNNAYINPNNKRIL 144 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr--~K~~~wtkEEd~~lins~~Kril 144 (479)
+|.||++|++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+.. .+.++|+.+|...++..++..+.
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~ 456 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIR 456 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999876 48899999999888887765544
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.99 E-value=6.3e-10 Score=78.57 Aligned_cols=43 Identities=47% Similarity=0.825 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHH
Q 044977 75 GWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
+||++||.+|+.++..|| ++|..||..+++||..+|++||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 9999999999999999999999875
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.92 E-value=1.7e-09 Score=76.36 Aligned_cols=45 Identities=40% Similarity=0.888 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhcc
Q 044977 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYL 67 (479)
Q Consensus 23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L 67 (479)
+||+|||..|..++..||..+|..||..+++|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999779999999999999999999998753
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.17 E-value=3.5e-07 Score=98.47 Aligned_cols=98 Identities=26% Similarity=0.564 Sum_probs=86.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC-----
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS--DFKKGGWSPEEDMLLCEAQKIFG----- 92 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P--~IkKg~WT~EEDelLLelvkk~G----- 92 (479)
.++.||+||+..|...+..+| +.|..|.+.+. |-+..||+||.+|..+ .+++++|+.||+.+|...+...-
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~-rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~~ 367 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG-RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQQ 367 (512)
T ss_pred hhccCcccccccccccccccc-chhhHhhhhhc-cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence 578999999999999999999 58999998665 8899999999999998 57788999999999998876432
Q ss_pred ---CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 93 ---NRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 93 ---nrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
-.|..|++.++.|....|+.++..+..
T Consensus 368 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 397 (512)
T COG5147 368 SSRILWLLIAQNIRNRLQHHCRDKYGVLIS 397 (512)
T ss_pred hhhhhHHHHHHhhhccccCCCCCccccccc
Confidence 259999999999999999998876654
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.63 E-value=0.00011 Score=58.29 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCh---hhHhhhcC-CC-Chhhhhhhhhhcc
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENW---SIIASKFK-DK-TTRQCRRRWYTYL 67 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nW---s~IAk~lp-gR-T~kQCReRW~n~L 67 (479)
+++..||+||..+++++|+.+|.++| ..|++.|. .| |..||+.+...|.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998899 99999987 46 9999999988764
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=3.3e-05 Score=83.25 Aligned_cols=66 Identities=26% Similarity=0.484 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhccccc
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYI 136 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~li 136 (479)
++-|-|+.-||++|-.++.+|| +.|++|+..++-.|..||++||...+.+.++...|+.+++..++
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlL 71 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLL 71 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHH
Confidence 4567899999999999999999 67999999999999999999999999999999999998876554
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.49 E-value=9e-05 Score=78.49 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
...||.+|+-+|++++..||.|||..||.+++.|++.+|+++|.+++-
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999999998653
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.28 E-value=0.00054 Score=54.30 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ch---hhhchhcC-CC-ChhHHHHHHHHHhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGN-RW---TEIAKVVS-GR-TDNAVKNRFSTLCK 119 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gn-rW---skIAk~LP-GR-TdnqcKNRW~slLk 119 (479)
+-.||+||...+++++..+|. +| ..|+..|. .| |..+|+.|++.+.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 557999999999999999996 99 99999883 45 99999999987653
No 26
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.17 E-value=0.0019 Score=62.88 Aligned_cols=97 Identities=20% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhHhhhcC---CCChhhhhhhhhhcc----------------CCCC-----CCCCCCH
Q 044977 23 TWTQQEDDILREQISIHGTENWSIIASKFK---DKTTRQCRRRWYTYL----------------NSDF-----KKGGWSP 78 (479)
Q Consensus 23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lp---gRT~kQCReRW~n~L----------------~P~I-----kKg~WT~ 78 (479)
+|++++|-+|+.+|..-. +-..|+..++ .-|-..+.+||+..| +|.. .+..||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998776 5777777665 237889999998553 3332 3568999
Q ss_pred HHHHHHHHHHHHhCC---chhhhc----hhc-CCCChhHHHHHHHHHhhhh
Q 044977 79 EEDMLLCEAQKIFGN---RWTEIA----KVV-SGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 79 EEDelLLelvkk~Gn---rWskIA----k~L-PGRTdnqcKNRW~slLkKr 121 (479)
+|+++|........+ .+.+|= ..| ++||+.++.+||+.+.+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 999999997766543 466552 234 8999999999999765543
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00046 Score=73.29 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLC 118 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slL 118 (479)
+-...||.+|+.+|++++..|| ++|..||.++..||..+||.||.+++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 3456799999999999999999 99999999999999999999997654
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.80 E-value=0.0014 Score=61.82 Aligned_cols=53 Identities=26% Similarity=0.514 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----chhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIF---GN----RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~---Gn----rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~ 125 (479)
+...||.|||.+|-+.|-+| |+ -...++..+ +||..+|.=|||+++|+++...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence 45789999999999999887 42 388999999 9999999999999999987544
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.55 E-value=0.0023 Score=52.37 Aligned_cols=48 Identities=38% Similarity=0.609 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKI------FG--N------RWTEIAKVV----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk------~G--n------rWskIAk~L----PGRTdnqcKNRW~slLkK 120 (479)
|..||.+|...|++++.. ++ + -|..||..| ..||+.||+++|.++.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999877 32 1 399999987 359999999999998764
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.53 E-value=0.0025 Score=69.37 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
++.||.+|..+|++++..||-.|.+||.++.+||..+|-.||..+
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999654
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.39 E-value=0.0027 Score=68.29 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
..+||.+|..+|++.+..||..|.+||.++..||..||.-||.++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 348999999999999999999999999999999999999999654
No 32
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.24 E-value=0.0053 Score=49.91 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCC--hhhHhhhcC-CCChhhhhhhhhhccCCC
Q 044977 21 IVTWTQQEDDILREQISIH---G---TEN--WSIIASKFK-DKTTRQCRRRWYTYLNSD 70 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~---G---~~n--Ws~IAk~lp-gRT~kQCReRW~n~L~P~ 70 (479)
|.++|.|||..|..+|..+ | .|| |..++..-+ .++..+-|+||..+|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 6789999999999999665 2 223 999999988 778889999999999764
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.15 E-value=0.0048 Score=66.44 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
...||.+|..+|.+.|+.||. .|.+||.++++|+..||..|+.+
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHHHHc
Confidence 348999999999999999995 89999999999999999999876
No 34
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.13 E-value=0.0045 Score=50.59 Aligned_cols=45 Identities=29% Similarity=0.605 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHH--h----C--CC-----ChhhHhhhcC----CCChhhhhhhhhh
Q 044977 21 IVTWTQQEDDILREQISI--H----G--TE-----NWSIIASKFK----DKTTRQCRRRWYT 65 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k--~----G--~~-----nWs~IAk~lp----gRT~kQCReRW~n 65 (479)
|..||.+|...|+.++.. + + .. -|..||..|. .|++.||+.+|.+
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~ 62 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN 62 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 357999999999998877 2 1 11 3999999985 6999999999986
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.93 E-value=0.0083 Score=65.39 Aligned_cols=48 Identities=29% Similarity=0.551 Sum_probs=43.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
...-+..||.+|+.+|.++|+.||. .|.+||.+++.|+..||..++.+
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCCCCHHHHHHHHHh
Confidence 3445678999999999999999995 89999999999999999999865
No 36
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.52 E-value=0.014 Score=55.70 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc-------hhhhchhcCCCChhHHHHHHHHHhhhhhhh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFGNR-------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKY 124 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~Gnr-------WskIAk~LPGRTdnqcKNRW~slLkKr~K~ 124 (479)
.+...||.|+|.+|-+.+-.|+.. ...++..| +||..+|.-||+.++++++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence 356789999999999999888742 66677778 899999999999999987643
No 37
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.42 E-value=0.02 Score=46.60 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhchhcC-CCChhHHHHHHHHHhhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFG--------NR-WTEIAKVVS-GRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G--------nr-WskIAk~LP-GRTdnqcKNRW~slLkKr 121 (479)
|.+||.+||..|+..+..+. |+ |.+++..-+ .+|-.+.|+||...++.+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 45799999999999997652 22 999999887 999999999998777653
No 38
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.19 E-value=0.086 Score=62.04 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhh----hhhhc-------------------------------
Q 044977 22 VTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRR----RWYTY------------------------------- 66 (479)
Q Consensus 22 g~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCRe----RW~n~------------------------------- 66 (479)
..||.-+=..++.+..+||..+...||..|.+++...++. -|.+|
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888889999999999999999999999888766542 22211
Q ss_pred --------------c-CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchh------------cCCCChhHHHHHHHHHh
Q 044977 67 --------------L-NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKV------------VSGRTDNAVKNRFSTLC 118 (479)
Q Consensus 67 --------------L-~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~------------LPGRTdnqcKNRW~slL 118 (479)
+ .+..++..||.+||..|+-++.+|| ++|.+|-.. +..||+..|..|..+++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 1 1233455699999999999999999 789998442 35799999999999998
Q ss_pred hhh
Q 044977 119 KKR 121 (479)
Q Consensus 119 kKr 121 (479)
+-.
T Consensus 985 ~~~ 987 (1033)
T PLN03142 985 RLI 987 (1033)
T ss_pred HHH
Confidence 753
No 39
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.96 E-value=0.067 Score=43.27 Aligned_cols=48 Identities=31% Similarity=0.453 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------chhhhchhc-----CCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFG----N-------------RWTEIAKVV-----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G----n-------------rWskIAk~L-----PGRTdnqcKNRW~slLkK 120 (479)
+..||++|..+|++++.+|. + -|..|+..| +.||..+||.+|.++...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999998873 1 299999976 359999999999988764
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.79 E-value=0.022 Score=59.33 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 23 TWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 23 ~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
.|+..|+.+|++...-.|.|||..||.+++.|+...|+.+|..++.
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999987654
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.65 E-value=0.022 Score=53.99 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCC---ChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 20 HIVTWTQQEDDILREQISIH---GTE---NWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~---G~~---nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
+...||.|||.+|.+.|-+| |.. ....|+..+. ||+..|.=||..+++
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~VR 56 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAYVR 56 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHHHH
Confidence 34579999999999999999 221 3777887776 999999999998886
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.27 E-value=0.042 Score=57.28 Aligned_cols=47 Identities=26% Similarity=0.704 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
-..|+..|+.+|++...-.| ++|..||.+++.|+..+||.||..+..
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34799999999999999999 899999999999999999999976543
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.10 E-value=0.041 Score=44.48 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------------CChhhHhhhcC-----CCChhhhhhhhhhcc
Q 044977 21 IVTWTQQEDDILREQISIHGT----------------ENWSIIASKFK-----DKTTRQCRRRWYTYL 67 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~----------------~nWs~IAk~lp-----gRT~kQCReRW~n~L 67 (479)
...||.+|...|+++|..|.. .-|..|+..|. .|+..+|+.+|.+..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999998821 13999999873 589999999998854
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.95 E-value=0.096 Score=50.13 Aligned_cols=48 Identities=27% Similarity=0.537 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC------hhhHhhhcCCCChhhhhhhhhhccC
Q 044977 20 HIVTWTQQEDDILREQISIHGTEN------WSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~n------Ws~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
+...||.|||.+|.+.|-+|+..- ...++..+. |+..+|..||..+++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHHHHHHH
Confidence 345799999999999999986432 445555554 999999999977665
No 45
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=91.14 E-value=0.29 Score=52.30 Aligned_cols=50 Identities=34% Similarity=0.496 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhchh-----cCC-CChhHHHHHHHHHhhhhhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAKV-----VSG-RTDNAVKNRFSTLCKKRAK 123 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk~-----LPG-RTdnqcKNRW~slLkKr~K 123 (479)
..||.+|-.-|.++++.|--||-.||.. ++. ||-.++|.||+.++++-.+
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k 186 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK 186 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999987 655 9999999999999887544
No 46
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=90.14 E-value=0.49 Score=42.71 Aligned_cols=51 Identities=31% Similarity=0.419 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----chhhhchh------------cCCCChhHHHHHHHHHhhh
Q 044977 70 DFKKGGWSPEEDMLLCEAQKIFGN----RWTEIAKV------------VSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 70 ~IkKg~WT~EEDelLLelvkk~Gn----rWskIAk~------------LPGRTdnqcKNRW~slLkK 120 (479)
..++..||++||.-|+-++.+||- .|..|-.. +..||+.+|..|..++++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 556778999999999999999995 79888654 3569999999999999864
No 47
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.67 E-value=1.2 Score=36.77 Aligned_cols=46 Identities=35% Similarity=0.609 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------chhhhchhc---CC--CChhHHHHHHHHHhhh
Q 044977 75 GWSPEEDMLLCEAQKIF---GN----------RWTEIAKVV---SG--RTDNAVKNRFSTLCKK 120 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~---Gn----------rWskIAk~L---PG--RTdnqcKNRW~slLkK 120 (479)
.||++++..|++++... |+ .|..|+..| +| .|..+|++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999998653 32 299999877 23 4788999999876553
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=86.94 E-value=0.91 Score=46.55 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhC----------Cchhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977 74 GGWSPEEDMLLCEAQKIFG----------NRWTEIAKVV----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~G----------nrWskIAk~L----PGRTdnqcKNRW~slLkK 120 (479)
..|+.+|-..||++..+.- .-|..||..+ .-||+.+||++|.++.++
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 6799999999999987542 3499999965 239999999999998764
No 49
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=86.84 E-value=2 Score=47.00 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
...||.||-.++-.++..||.++.+|-+.||.|+-..+..+|....+.+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999887765543
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=81.58 E-value=1.8 Score=46.39 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
.+||.+|-+++..+...+|..++.|+..||.|...|||..|.+--+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek 411 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK 411 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence 3699999999999999999999999999999999999999976443
No 51
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=80.55 E-value=2.7 Score=31.48 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 78 PEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 78 ~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
++++..++.++...|-.|.+||..+ |.|...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 5677788888888999999999999 9999999998876554
No 52
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=80.28 E-value=2 Score=44.15 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCC-----ChhhHhhhcC----CCChhhhhhhhhhc
Q 044977 21 IVTWTQQEDDILREQISIH----GTE-----NWSIIASKFK----DKTTRQCRRRWYTY 66 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~----G~~-----nWs~IAk~lp----gRT~kQCReRW~n~ 66 (479)
...|+.+|-..|+++.... ..+ -|..||..+. -|++.||+.+|.|.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl 112 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL 112 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4789999999999987543 222 3999999654 48999999999873
No 53
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=77.51 E-value=3.4 Score=44.45 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
...-+||.+|-+++..++...|+ ..+.|+..+|.|..+|+...|.+
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence 34458999999999999999997 79999999999999999999875
No 54
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=75.26 E-value=3.7 Score=37.15 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=35.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CChhhHhhhc------------CCCChhhhhhhhh
Q 044977 18 ERHIVTWTQQEDDILREQISIHGT---ENWSIIASKF------------KDKTTRQCRRRWY 64 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G~---~nWs~IAk~l------------pgRT~kQCReRW~ 64 (479)
..++..||.+||.-|+-++.+||- +.|..|-..+ ..||+..+..|-.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~ 107 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN 107 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence 445678999999999999999998 8899998753 2577777777743
No 55
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=71.38 E-value=6.8 Score=32.36 Aligned_cols=43 Identities=28% Similarity=0.652 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------ChhhHhhhcCC-----CChhhhhhhhhh
Q 044977 23 TWTQQEDDILREQISIH---GTE---------NWSIIASKFKD-----KTTRQCRRRWYT 65 (479)
Q Consensus 23 ~WT~EEDekL~elV~k~---G~~---------nWs~IAk~lpg-----RT~kQCReRW~n 65 (479)
.||+++++.|++++... |.. .|..|+..|.. .+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999987544 111 29999998863 357889988754
No 56
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=68.59 E-value=40 Score=39.33 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHH
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFST 116 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~s 116 (479)
..||+.|-.++-.++..|...+..|++.++++|-.+|-.+|++
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHH
Confidence 4699999999999999999999999999999999999887765
No 57
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=64.76 E-value=6.8 Score=33.08 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=16.1
Q ss_pred CCCCCCCCHHHHHHH--------HHHHHHhCCCChhhHhh
Q 044977 18 ERHIVTWTQQEDDIL--------REQISIHGTENWSIIAS 49 (479)
Q Consensus 18 krkrg~WT~EEDekL--------~elV~k~G~~nWs~IAk 49 (479)
....|-||+|+|+.| ..++++|| +..|+.
T Consensus 44 ~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 44 DNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 355788999999999 34556666 444543
No 58
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=57.83 E-value=20 Score=26.74 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHH
Q 044977 79 EEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 79 EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~sl 117 (479)
+=|..|+.+...-|. .|.+||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 447788888888885 599999999 99999999999754
No 59
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=56.50 E-value=24 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 79 EEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 79 EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+++..++.++.-.|-.+.+||..+ |-|...|+.+....+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 445556666655567899999999 89999999998887765
No 60
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=56.33 E-value=16 Score=41.62 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhch----------hcCCCChhHHHHHHHHHhhhhhhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAK----------VVSGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk----------~LPGRTdnqcKNRW~slLkKr~K~~ 125 (479)
|..||-.|.+-+..+.+++|..+.+|-+ .+.-+|-.|++.+|+.++++..|..
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999999999832 2344688899999999888876655
No 61
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=56.23 E-value=14 Score=30.32 Aligned_cols=59 Identities=29% Similarity=0.532 Sum_probs=40.8
Q ss_pred cccCCChhHHHHHHHHHHHHHHhhhh--CCCchhHHHHHHHHHHHHHhcccCcCcccccCcCcc
Q 044977 244 FLKKDDPKITALIQQAELLSSLAQKV--NTESTEQSLENAWKVLQDFLNRSKENDILRCKISDI 305 (479)
Q Consensus 244 ~l~~~~pk~~~~~qq~~ll~sla~k~--~~~~~~qs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (479)
.||+-.-++..+++++|.+.++|... +.+--...|++|||.| ++++--|. |.++.|...
T Consensus 11 ~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~l--l~~q~HD~-i~Gt~~~~V 71 (79)
T smart00872 11 YLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKAL--LLNQFHDA-ITGTSIDEV 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH--HHhcCccc-CCccCcHHH
Confidence 46777778888999999999998644 2233356799999977 34444444 666666543
No 62
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=54.66 E-value=7.2 Score=32.07 Aligned_cols=59 Identities=31% Similarity=0.487 Sum_probs=39.8
Q ss_pred cccCCChhHHHHHHHHHHHHHHhhhh-C-CCchhHHHHHHHHHHHHHhcccCcCcccccCcCcc
Q 044977 244 FLKKDDPKITALIQQAELLSSLAQKV-N-TESTEQSLENAWKVLQDFLNRSKENDILRCKISDI 305 (479)
Q Consensus 244 ~l~~~~pk~~~~~qq~~ll~sla~k~-~-~~~~~qs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (479)
.+|+-.-+...+++.||.|.++|.-. + .+--...|++||+.| .+++--|. |.+..++..
T Consensus 12 ~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l--~~~q~HD~-i~GT~~~~V 72 (80)
T PF09261_consen 12 DIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKAL--LLNQFHDA-ITGTSIDSV 72 (80)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHH--HCTTBTTT-TTS-S-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHH--HHhccCCC-CCCcChHHH
Confidence 46667777888999999999999988 2 233568899999876 34444343 555555443
No 63
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=53.74 E-value=19 Score=35.56 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhchhc---CCCChhHHHHHHHHHhh
Q 044977 75 GWSPEEDMLLCEAQKIFGNRWTEIAKVV---SGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~GnrWskIAk~L---PGRTdnqcKNRW~slLk 119 (479)
.|++.+|.+|+.+| ..|+.-..|+.-+ -.-|-.+|..||+.++-
T Consensus 1 rW~~~DDl~Li~av-~~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAV-EQTNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHH-HHhcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 49999999999998 5577777776643 33588999999998874
No 64
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=53.15 E-value=17 Score=42.15 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
.....||+.|..++.+++..|. +..-.|++.+++++.+||-+-|+.
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred cCcccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence 3567899999999999999998 489999999999999999777654
No 65
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=51.72 E-value=24 Score=26.30 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 27 QEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 27 EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
+=|..|+.+++..+...|..||+.++ =+...|+.|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC-cCHHHHHHHHHH
Confidence 34788999999999889999999887 788889998754
No 66
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=51.00 E-value=27 Score=30.32 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.++.+....|-.+.+||..+ |.|...|+.+....+++
T Consensus 120 ~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 120 KIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444344577899999999 89999999999876554
No 67
>smart00595 MADF subfamily of SANT domain.
Probab=49.77 E-value=14 Score=30.18 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=21.8
Q ss_pred hhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 95 WTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 95 WskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
|..||..| |-|..+|+.+|+++...
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 99999999 55999999999987643
No 68
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=46.46 E-value=31 Score=31.50 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 78 PEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 78 ~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.+-|..|+.+..+-|. .|++||+.+ |-|...|++|++.+....
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 3568888888888874 699999999 999999999999887654
No 69
>PRK09819 alpha-mannosidase; Provisional
Probab=45.57 E-value=34 Score=39.90 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=42.1
Q ss_pred ccCCChhHHHHHH-HHHHHHHHhhhhCCCchhHHHHHHHHHHHHHhcccCcCcccccCcCcc
Q 044977 245 LKKDDPKITALIQ-QAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISDI 305 (479)
Q Consensus 245 l~~~~pk~~~~~q-q~~ll~sla~k~~~~~~~qs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (479)
+|+-.-++-.++. ++|.|+++|.+....--...|+.|||.| ++|+--|. |.++.|...
T Consensus 290 iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~l--l~nq~HD~-i~G~sid~V 348 (875)
T PRK09819 290 IKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEM--FKNHAHDS-IGCCCSDTV 348 (875)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHH--HHhcCCCc-ccccCChHH
Confidence 4555566666665 5999999998775555567799999987 56665554 888888754
No 70
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=43.98 E-value=24 Score=36.75 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhhhCCCchhHHHHHHHH----------HHHHHhcccCcCcccccCcCccc--hhhhhhHHHHHHhh
Q 044977 253 TALIQQAELLSSLAQKVNTESTEQSLENAWK----------VLQDFLNRSKENDILRCKISDID--LQLEDFKDLIEDLR 320 (479)
Q Consensus 253 ~~~~qq~~ll~sla~k~~~~~~~qs~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 320 (479)
+.||.-+|.+..--.---...|-=-|-.||. .+++++.+-.+-+|--|---+|- -|-.+|||.=---|
T Consensus 114 ~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAY 193 (380)
T KOG2900|consen 114 EKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAY 193 (380)
T ss_pred HHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceec
Confidence 4455555555432222223456666777775 66777766655555444333331 23445555433333
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCcchhhHHHHHHHHhhhhhhhhhhhhhhcccccccCCC----
Q 044977 321 SSNDESRSSWRHPDLFEDSPASSEYSTGSTLIPRPAGDTTDQIDAELSALHQAIGTELQSIDIAKQHCLVEQDKGS---- 396 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 396 (479)
+-|- -.|-||-+ -++.--.+| ..|++|.--...|+..|.+|-
T Consensus 194 NHNl---------------DTSREyYs--kvItTRtYD-----------------dRL~Ti~nvr~aGikvCsGGIlGLG 239 (380)
T KOG2900|consen 194 NHNL---------------DTSREYYS--KVITTRTYD-----------------DRLQTIKNVREAGIKVCSGGILGLG 239 (380)
T ss_pred ccCc---------------cchhhhhc--ccceecchH-----------------HHHHHHHHHHHhcceeccccccccc
Confidence 3222 12445543 233333332 234444444456666666651
Q ss_pred -cccc-------cccccCCCccCCCCCCcccCCCc----ccCCCcccchhhHhhh-cCCCCCC-----------CchhHH
Q 044977 397 -ADSK-------QGLFTSGGEDTNNDGAASTSSST----EFSSPLHVTPLFRSLA-AGIPSPK-----------FSESRV 452 (479)
Q Consensus 397 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~ 452 (479)
..-+ -.+.|+-.|-..-+..+ ++.++ |-+-|||+-|+.|++| |-|--|| |||||+
T Consensus 240 E~e~DriGlihtLatmp~HPESvPiN~Lv-aikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~sesEQ 318 (380)
T KOG2900|consen 240 ESEDDRIGLIHTLATMPPHPESVPINRLV-AIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRLAAGRYTMSESEQ 318 (380)
T ss_pred ccccceeeeeeeeccCCCCCcccccceEE-ecCCcccchhhcccccHHHHHHHHhhhheechHHHHHHhccccccchhHH
Confidence 1111 13456666655443332 55554 6789999999999987 4566664 999999
Q ss_pred HHHHhhceEEE
Q 044977 453 VVVKAVTTVVV 463 (479)
Q Consensus 453 ~~~~~~~~~~~ 463 (479)
+|-.--|+.-|
T Consensus 319 alcFmAGaNsi 329 (380)
T KOG2900|consen 319 ALCFMAGANSI 329 (380)
T ss_pred HHHHHhCCccc
Confidence 99887777654
No 71
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=43.90 E-value=22 Score=33.71 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHH
Q 044977 75 GWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFST 116 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~s 116 (479)
.||+|..+.|.+|. .-|-.=++||..|.|.|.|+|..+.+.
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 59999999999988 458889999999988999999887654
No 72
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=42.93 E-value=80 Score=36.29 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc-C---------CCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKF-K---------DKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQK 89 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~l-p---------gRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvk 89 (479)
.+..||..|.+-+..+++.+|. +...|-+.+ . -++..|.|..|+..++- +..++
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~--------------m~k~~- 150 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR--------------MNKLL- 150 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH--------------HHhhh-
Confidence 3668999999999999999995 788873332 2 23456788887764431 22222
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHH
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFST 116 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~s 116 (479)
||+.-..=|+.+- ---|.|..||+.
T Consensus 151 -F~~~l~~dAkel~-tliNa~e~rrk~ 175 (782)
T KOG4468|consen 151 -FGPDLSLDAKELK-TLINAAELRRKS 175 (782)
T ss_pred -cccccCcchhhHH-HHhhHHHHHHHH
Confidence 4554444454441 123566666666
No 73
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=41.14 E-value=35 Score=31.57 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhh
Q 044977 78 PEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122 (479)
Q Consensus 78 ~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~ 122 (479)
.+-|..|+.+..+-|. .|++||+.+ |=|...|+.|++.+.+...
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4568888888888775 699999999 9999999999998877643
No 74
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=41.05 E-value=31 Score=39.10 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..+.|+.+|-++...+...+|...+.|+..+|+|+..+||..|..-=++
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r 456 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKR 456 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhc
Confidence 3568999999999999999999999999999999999999999654433
No 75
>smart00595 MADF subfamily of SANT domain.
Probab=40.53 E-value=18 Score=29.51 Aligned_cols=22 Identities=27% Similarity=0.817 Sum_probs=19.7
Q ss_pred ChhhHhhhcCCCChhhhhhhhhh
Q 044977 43 NWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 43 nWs~IAk~lpgRT~kQCReRW~n 65 (479)
-|..||..|+. +...|+.+|.+
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~ 50 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKN 50 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHH
Confidence 39999999986 99999999976
No 76
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=39.43 E-value=53 Score=27.45 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 85 CEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 85 Lelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+.++...|-.+.+||+.+ |=|...|+++....+++
T Consensus 119 i~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 119 LVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344444578899999999 77999999998876654
No 77
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=38.16 E-value=2.3e+02 Score=30.38 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=63.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHH-h----
Q 044977 20 HIVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKI-F---- 91 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk-~---- 91 (479)
....||.-|...|..+.+..... .-..|++.+++|+..+++.-- +.|+ +..+.+++.+ |
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl-~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFL-QQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHH-HHHH------------HHHHHHHHHHhccccc
Confidence 35689999999999988776433 356888999999998887653 3332 2345555555 2
Q ss_pred -CCc------------hhhhchhcCCCChhHHHHHHHHHhh
Q 044977 92 -GNR------------WTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 92 -Gnr------------WskIAk~LPGRTdnqcKNRW~slLk 119 (479)
|.| |..+|..+.|.-...+-.-|..+|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 211 9999999999999988888876653
No 78
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=37.44 E-value=31 Score=29.12 Aligned_cols=17 Identities=41% Similarity=0.765 Sum_probs=10.0
Q ss_pred CCCCCCCCCHHHHHHHH
Q 044977 69 SDFKKGGWSPEEDMLLC 85 (479)
Q Consensus 69 P~IkKg~WT~EEDelLL 85 (479)
|.-..|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55668899999999984
No 79
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=37.36 E-value=85 Score=33.42 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHh-CCc---hhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 74 GGWSPEEDMLLCEAQKIF-GNR---WTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~-Gnr---WskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..||.-|...|+.+..-. |.. -..|++.++||+..+|++.-+.+..+
T Consensus 22 ~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 22 AAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 469999999888877654 544 56889999999999999966554433
No 80
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=37.00 E-value=42 Score=30.62 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977 27 QEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70 (479)
Q Consensus 27 EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~ 70 (479)
+-|.+|+.++++.|...|+.||+.++ -+...|+.|+..-...+
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lg-lS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFG-VSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCC
Confidence 57899999999999999999999886 88899999998755544
No 81
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=33.74 E-value=33 Score=27.05 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=21.5
Q ss_pred hhhhchhcCC-CChhHHHHHHHHHhhh
Q 044977 95 WTEIAKVVSG-RTDNAVKNRFSTLCKK 120 (479)
Q Consensus 95 WskIAk~LPG-RTdnqcKNRW~slLkK 120 (479)
|..||..+.+ -+..+|+.||+++...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999999943 5788999999987653
No 82
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=32.79 E-value=82 Score=27.96 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.7
Q ss_pred HHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 87 AQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 87 lvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+....|-.+..||..+ |.+...|+.+....+++
T Consensus 139 l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 139 LREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334567899999999 89999999988765544
No 83
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=32.17 E-value=79 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC--------chhhhchhcCC---CC--hhHHHHHHHHHhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSG---RT--DNAVKNRFSTLCK 119 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPG---RT--dnqcKNRW~slLk 119 (479)
.|..+|.+.|+ .|..||..|.- -+ ..++|..|..+|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 46777777774 69999999822 12 3678898887764
No 84
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.07 E-value=47 Score=30.72 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCC
Q 044977 26 QQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDF 71 (479)
Q Consensus 26 ~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~I 71 (479)
.+-|.+|+.+.++.|.-.|..||+.++ -+...|+.|+..-...++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg-lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG-LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 567889999999999899999999887 888899999987655443
No 85
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=30.95 E-value=87 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=24.5
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-.+..||..+ |-|...|+++.....++
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4466799999999 89999999998765544
No 86
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=30.34 E-value=75 Score=27.69 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHh----C----CchhhhchhcCC-----CChhHHHHHHHHHhhh
Q 044977 74 GGWSPEEDMLLCEAQKIF----G----NRWTEIAKVVSG-----RTDNAVKNRFSTLCKK 120 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~----G----nrWskIAk~LPG-----RTdnqcKNRW~slLkK 120 (479)
.-||++++..||+.+..| | ..|..+-..+.+ =|.+|+.+..+.+.++
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 359999999999998776 5 245444444322 2677887777666544
No 87
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=28.76 E-value=86 Score=26.34 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCC-----ChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGR-----TDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGR-----TdnqcKNRW~slLkK 120 (479)
.|..+|.++|+ +|..||..|.-. ...++|..|..+|.+
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 46677777774 699999998322 356788888877754
No 88
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=28.55 E-value=41 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCchhHHHHHHHHHHHHHhcccCcCc-ccccCcCccchhhhhhHHH
Q 044977 270 NTESTEQSLENAWKVLQDFLNRSKEND-ILRCKISDIDLQLEDFKDL 315 (479)
Q Consensus 270 ~~~~~~qs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 315 (479)
+-|++.+.||-.+|+..+||.++.-+- -..|.|+++=--+++|.||
T Consensus 21 DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~Dl 67 (104)
T KOG1766|consen 21 DYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLADL 67 (104)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhhh
Confidence 558899999999999999998874431 2345555443334444443
No 89
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=28.23 E-value=76 Score=35.29 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhh
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWY 64 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~ 64 (479)
....||.||--++.++...||. +..+|-..||.|+-.+++.-|+
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP~rsLaSlvqyYy 229 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIRQALPHRSLASLVQYYY 229 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHHHHccCccHHHHHHHHH
Confidence 3457999999999999999995 8999999999999777666554
No 90
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=27.96 E-value=1.1e+02 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 85 CEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 85 Lelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+.+....|-...+||..+ |-+...|++|+....++
T Consensus 143 ~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 143 LVAVDMQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 333444567799999999 99999999999665544
No 91
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=27.87 E-value=2.5e+02 Score=30.82 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhch-hcCCCChhHHHHHHHHHhhhhhhhhhhhhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAK-VVSGRTDNAVKNRFSTLCKKRAKYEALAKE 130 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk-~LPGRTdnqcKNRW~slLkKr~K~~~wtkE 130 (479)
..|+++|-..+-+..+.||..+..|.. .++.|+--.|-.+|+. -||.-++.-|...
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl-WKkSeryd~~~qq 334 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL-WKKSERYDVFAQQ 334 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH-hhcCcchhhHhhh
Confidence 369999999999999999999999965 7899999999887753 3333444555433
No 92
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=27.82 E-value=26 Score=37.84 Aligned_cols=15 Identities=53% Similarity=0.891 Sum_probs=12.1
Q ss_pred CCCCCCCccccccCC
Q 044977 342 SSEYSTGSTLIPRPA 356 (479)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (479)
|-.|||||.|||+--
T Consensus 274 SDaySTGSSlMPQKK 288 (464)
T KOG1316|consen 274 SDAYSTGSSLMPQKK 288 (464)
T ss_pred ccccccCcccCCCCC
Confidence 345999999999854
No 93
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=27.38 E-value=1.1e+02 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 82 MLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 82 elLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
..++++..-.|-.+.+||..+ |-|...|+.||..+..
T Consensus 141 ~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~ 177 (185)
T PF07638_consen 141 RRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARA 177 (185)
T ss_pred HHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344444445577899999999 9999999999987653
No 94
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=26.74 E-value=36 Score=37.00 Aligned_cols=47 Identities=21% Similarity=0.473 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhh-----cCC-CChhhhhhhhhhcc
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASK-----FKD-KTTRQCRRRWYTYL 67 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~-----lpg-RT~kQCReRW~n~L 67 (479)
+-..||.+|.+-|.++.++|.- +|--||.. ++. ||.....+||+...
T Consensus 129 ~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 129 NDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 3357999999999999999995 79999887 564 99999999998543
No 95
>PRK12546 RNA polymerase sigma factor; Provisional
Probab=26.11 E-value=1.6e+02 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 86 EAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 86 elvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.++...|-...+||..+ |-|...|++|....+++-
T Consensus 123 ~L~~~~g~s~~EIA~~L-giS~~tVk~~l~Rar~~L 157 (188)
T PRK12546 123 ILVGASGFSYEEAAEMC-GVAVGTVKSRANRARARL 157 (188)
T ss_pred hhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 33334566789999999 899999999987766543
No 96
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=25.79 E-value=1.2e+02 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=24.0
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-.+.+||..+ |-|...|+++.....++
T Consensus 150 ~~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 150 IEDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 99999999988765544
No 97
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=25.40 E-value=1.5e+02 Score=20.49 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
++++ +..++.++..-|-.+..||..+ |=+...|+.+....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~ 50 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRA 50 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4444 4445555556677899999998 78888887766544
No 98
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=24.93 E-value=1.3e+02 Score=28.15 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC----CCChhhhhhhhhhc
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFK----DKTTRQCRRRWYTY 66 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp----gRT~kQCReRW~n~ 66 (479)
.....-|..|..-+..+|.+||. ++...+.-.. ..|..||+.+...|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 56668899999999999999995 7888886543 35777887776554
No 99
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=24.15 E-value=1.5e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 87 AQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 87 lvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
++...|-...+||..| |-+.+.|++|....+++
T Consensus 117 l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 117 LRYWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHHHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334466789999999 89999999998766554
No 100
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=23.07 E-value=1.7e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 87 AQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 87 lvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+....|-...+||..+ |-+...|++|.....++
T Consensus 117 l~~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 117 AHYLEEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred HHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334466789999999 99999999998765544
No 101
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=23.03 E-value=1.2e+02 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 92 GNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 92 GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
|-...+||..+ |=|.+.|++|.....++
T Consensus 154 ~~s~~EIA~~l-gis~~tv~~~l~rar~~ 181 (190)
T TIGR02939 154 GLSYEDIARIM-DCPVGTVRSRIFRAREA 181 (190)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 55689999999 88999999998766554
No 102
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=22.98 E-value=1.5e+02 Score=26.68 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=23.3
Q ss_pred hCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 91 FGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 91 ~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|-...+||..+ |-|...|++|....+++
T Consensus 134 ~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 134 HDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456789999999 88999999998766554
No 103
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.97 E-value=2.8e+02 Score=24.46 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
++..||.|+-...+..+...|. +-..||..++- ..+--.+|.+.+.
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g~-sv~evA~e~gI--s~~tl~~W~r~y~ 54 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPGM-TVSLVARQHGV--AASQLFLWRKQYQ 54 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCCC-CHHHHHHHHCc--CHHHHHHHHHHHh
Confidence 3567999998888877776663 78899998875 4455567876543
No 104
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=22.42 E-value=91 Score=26.60 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCchhhhchhcCCCChhHH
Q 044977 81 DMLLCEAQKIFGNRWTEIAKVVSGRTDNAV 110 (479)
Q Consensus 81 DelLLelvkk~GnrWskIAk~LPGRTdnqc 110 (479)
|..|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 4568888999999999999999 6666655
No 105
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=22.38 E-value=1.6e+02 Score=27.37 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=27.3
Q ss_pred HHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 84 LCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 84 LLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
++.++...|-...+||..| |-|.+.|+.|....+++
T Consensus 139 v~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~ 174 (188)
T TIGR02943 139 VFMMREVLGFESDEICQEL-EISTSNCHVLLYRARLS 174 (188)
T ss_pred HHHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344444567799999999 99999999998766554
No 106
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=22.33 E-value=1.2e+02 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 92 GNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 92 GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
|-...+||..+ |-|.+.|++|.....++
T Consensus 152 g~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T TIGR02948 152 DLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 56689999999 88999999988765544
No 107
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=21.77 E-value=1.5e+02 Score=26.82 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.++.+....|-...+||..+ |-+.+.|+.|...-+++
T Consensus 126 ~v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 162 (172)
T PRK12523 126 AAFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQ 162 (172)
T ss_pred HHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33444444567899999999 99999999998766554
No 108
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=21.75 E-value=1.7e+02 Score=27.22 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=24.3
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-...+||..| |-|...||.|.....++
T Consensus 148 ~~g~s~~EIA~~l-gis~~tVk~~l~RAr~~ 177 (189)
T PRK12530 148 YLELSSEQICQEC-DISTSNLHVLLYRARLQ 177 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 99999999998765543
No 109
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=21.72 E-value=1.7e+02 Score=26.86 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.4
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-...+||..| |-|...|++|....+++
T Consensus 145 ~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~ 174 (189)
T PRK12515 145 YHEKSVEEVGEIV-GIPESTVKTRMFYARKK 174 (189)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3456789999999 88999999999766544
No 110
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=21.57 E-value=1.6e+02 Score=24.69 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 79 EEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 79 EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
+.|..|+.+....|. .++.||+.+ |-+...|+.|.+.+.+..
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g 45 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 467888888888774 699999999 999999999999887654
No 111
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=21.53 E-value=1.8e+02 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=23.9
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
-.|-.-.+||..+ |.+...|+.|....+++
T Consensus 132 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 132 YRGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3456689999999 99999999998766544
No 112
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=21.46 E-value=1.6e+02 Score=27.20 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=24.5
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-.+.+||..| |-|...|++|.....++
T Consensus 120 ~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 120 LEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4466799999999 89999999998765544
No 113
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=21.39 E-value=42 Score=37.05 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=18.1
Q ss_pred CCCCCCccccccCC-CCCcchhhHHHH
Q 044977 343 SEYSTGSTLIPRPA-GDTTDQIDAELS 368 (479)
Q Consensus 343 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 368 (479)
-+|+|||.||||-- +|-.|-..+..+
T Consensus 272 D~~sTGSSIMPQKKNPD~~ELiRgk~g 298 (459)
T COG0165 272 DEFSTGSSIMPQKKNPDVLELIRGKAG 298 (459)
T ss_pred cccccccccCCCCCCCcHHHHHHHhhh
Confidence 35999999999963 555565555433
No 114
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=20.92 E-value=1.6e+02 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=24.1
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-...+||..| |-+...|+.|....+++
T Consensus 145 ~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 145 VEGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3456789999999 89999999998766554
No 115
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=20.87 E-value=56 Score=40.17 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHh
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIA 48 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IA 48 (479)
...-|..++|.+|+-.|-+||-++|..|-
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir 1160 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIR 1160 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhc
Confidence 45689999999999999999999999985
No 116
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=20.61 E-value=1.9e+02 Score=26.55 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 87 AQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 87 lvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
++...|-...+||..+ |-+.+.||.|....+.+-
T Consensus 138 L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~ 171 (178)
T PRK12529 138 MATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTC 171 (178)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3334466799999999 999999999998766553
No 117
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=20.56 E-value=1.5e+02 Score=36.00 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHh
Q 044977 74 GGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLC 118 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slL 118 (479)
..|+.-+=..++.+..+|| .....||..|.|+|..+|+.+.....
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~ 870 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFW 870 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3699999999999999999 56999999999999999998765544
No 118
>PRK04217 hypothetical protein; Provisional
Probab=20.41 E-value=1.7e+02 Score=26.35 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 75 GWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.-|++| ..++.+....|-...+||+.+ |-+...|+.+++...++
T Consensus 42 ~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkk 85 (110)
T PRK04217 42 FMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKK 85 (110)
T ss_pred cCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456666 567777777788999999999 99999999999876554
No 119
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=20.36 E-value=60 Score=28.12 Aligned_cols=57 Identities=23% Similarity=0.493 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcccCcCcccc-cCcCccchhhhhhHHHHHHhhhcccCCC---CCCCC
Q 044977 276 QSLENAWKVLQDFLNRSKENDILR-CKISDIDLQLEDFKDLIEDLRSSNDESR---SSWRH 332 (479)
Q Consensus 276 qs~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 332 (479)
.+|+++++++.+||..+-..++-. +.=-++...|++|++||.+-+....... |.|+.
T Consensus 2 ~~L~~~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~ 62 (109)
T PF03980_consen 2 ESLESVHQQMIEFLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRH 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCC
Confidence 468888998888887653332211 1112456689999999999877665322 55553
No 120
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=20.33 E-value=1.7e+02 Score=26.81 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 92 GNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 92 GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
|-...+||..+ |-|.+.|++|....+++
T Consensus 154 g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 154 GLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45688999999 88999999998776654
No 121
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=20.21 E-value=1.9e+02 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=24.1
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-...+||..+ |-+...|+.|....+++
T Consensus 153 ~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 182 (189)
T PRK09648 153 VVGLSAEETAEAV-GSTPGAVRVAQHRALAR 182 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 89999999998765554
No 122
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=20.20 E-value=93 Score=35.43 Aligned_cols=49 Identities=18% Similarity=0.444 Sum_probs=43.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
.++...++||.+|-++........|. +.+.|+..+++|..+|++..+..
T Consensus 404 sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 404 SKKLETDKWDASETELFYKALSERGS-DFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred cCccccCcccchhhHHhhhHHhhhcc-cccccccccccccHHHHHHHHhh
Confidence 34556779999999999999999996 89999999999999999998764
No 123
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=20.05 E-value=1.9e+02 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.4
Q ss_pred hCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 91 FGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 91 ~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|-...+||..| |-|.+.|+.|....+++
T Consensus 156 eg~s~~EIA~~l-gis~~tVk~rl~ra~~~ 184 (194)
T PRK12531 156 EELPHQQVAEMF-DIPLGTVKSRLRLAVEK 184 (194)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 356789999999 99999999998766554
Done!