Query 044977
Match_columns 479
No_of_seqs 221 out of 1397
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 100.0 5E-33 1.7E-37 236.9 11.9 105 21-125 1-105 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.2E-32 4.1E-37 232.6 12.2 103 19-121 2-104 (105)
3 3zqc_A MYB3; transcription-DNA 100.0 7.2E-33 2.5E-37 243.5 10.7 109 21-129 2-110 (131)
4 3osg_A MYB21; transcription-DN 100.0 6.8E-32 2.3E-36 236.2 12.7 105 16-121 6-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.1E-31 7E-36 232.8 11.9 105 17-121 23-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.9E-31 9.8E-36 239.2 4.5 121 19-139 4-125 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-29 7E-34 227.1 11.3 104 18-121 55-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.7E-23 9.3E-28 181.5 3.6 93 47-139 1-94 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.6E-20 5.4E-25 149.3 6.4 66 16-81 4-69 (70)
10 2juh_A Telomere binding protei 99.7 3.2E-18 1.1E-22 151.2 6.7 89 9-97 5-103 (121)
11 1ign_A Protein (RAP1); RAP1,ye 99.7 7E-18 2.4E-22 163.6 9.2 105 17-121 4-200 (246)
12 2roh_A RTBP1, telomere binding 99.7 3.5E-17 1.2E-21 144.8 8.8 81 15-95 25-115 (122)
13 2llk_A Cyclin-D-binding MYB-li 99.7 1.5E-17 5.2E-22 135.2 5.1 60 59-119 9-68 (73)
14 2dim_A Cell division cycle 5-l 99.7 3.7E-17 1.3E-21 129.9 4.0 65 68-132 4-69 (70)
15 1ity_A TRF1; helix-turn-helix, 99.7 1.1E-16 3.8E-21 127.0 6.4 64 14-77 3-68 (69)
16 2din_A Cell division cycle 5-l 99.6 1.3E-16 4.5E-21 125.4 5.7 60 65-125 1-60 (66)
17 2d9a_A B-MYB, MYB-related prot 99.6 3.6E-16 1.2E-20 120.6 6.9 56 17-72 4-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.6 3.2E-16 1.1E-20 117.7 6.2 51 20-70 2-52 (52)
19 2cu7_A KIAA1915 protein; nucle 99.6 4.8E-16 1.6E-20 124.4 6.1 58 67-124 3-60 (72)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 4.5E-16 1.6E-20 116.7 5.6 51 20-70 2-52 (52)
21 2d9a_A B-MYB, MYB-related prot 99.6 8.6E-16 2.9E-20 118.5 4.9 55 68-122 3-58 (60)
22 3sjm_A Telomeric repeat-bindin 99.6 2.1E-15 7.1E-20 119.2 5.5 54 19-72 9-64 (64)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 3.1E-15 1.1E-19 112.2 5.6 50 71-120 1-51 (52)
24 1gvd_A MYB proto-oncogene prot 99.5 5.8E-15 2E-19 110.8 5.3 50 71-120 1-51 (52)
25 1w0t_A Telomeric repeat bindin 99.5 9.1E-15 3.1E-19 110.5 5.5 49 20-68 1-51 (53)
26 1x41_A Transcriptional adaptor 99.5 1.4E-14 4.8E-19 112.3 6.0 53 18-70 5-57 (60)
27 1w0t_A Telomeric repeat bindin 99.5 1.5E-14 5.2E-19 109.3 5.8 49 72-120 1-52 (53)
28 1ity_A TRF1; helix-turn-helix, 99.5 1.5E-14 5.2E-19 114.6 5.9 58 66-123 3-63 (69)
29 1x41_A Transcriptional adaptor 99.5 1.8E-14 6.1E-19 111.7 5.8 53 68-120 3-56 (60)
30 3osg_A MYB21; transcription-DN 99.5 9.8E-15 3.3E-19 127.6 4.3 72 68-139 6-77 (126)
31 1gv2_A C-MYB, MYB proto-oncoge 99.5 7.3E-15 2.5E-19 123.8 3.3 70 70-139 1-71 (105)
32 2yum_A ZZZ3 protein, zinc fing 99.5 2.5E-14 8.5E-19 114.8 5.1 56 68-123 3-64 (75)
33 2aje_A Telomere repeat-binding 99.5 5.7E-14 1.9E-18 121.4 7.0 83 12-94 4-96 (105)
34 2elk_A SPCC24B10.08C protein; 99.5 4.5E-14 1.6E-18 109.0 5.3 49 19-67 7-56 (58)
35 2yum_A ZZZ3 protein, zinc fing 99.5 3.4E-14 1.2E-18 114.0 4.5 61 16-76 3-68 (75)
36 2k9n_A MYB24; R2R3 domain, DNA 99.4 3.8E-14 1.3E-18 120.5 3.4 67 73-139 1-68 (107)
37 2din_A Cell division cycle 5-l 99.4 3.1E-14 1E-18 111.8 2.5 56 17-74 5-60 (66)
38 2elk_A SPCC24B10.08C protein; 99.4 1.5E-13 5.1E-18 106.1 6.1 50 69-118 5-56 (58)
39 2ltp_A Nuclear receptor corepr 99.1 1.2E-14 4.3E-19 121.1 0.0 56 66-121 9-64 (89)
40 3sjm_A Telomeric repeat-bindin 99.4 1.3E-13 4.4E-18 109.0 5.8 51 71-121 9-62 (64)
41 3zqc_A MYB3; transcription-DNA 99.4 6.4E-14 2.2E-18 123.0 3.9 67 73-139 2-69 (131)
42 2ckx_A NGTRF1, telomere bindin 99.4 5.9E-13 2E-17 110.5 7.8 69 22-90 1-79 (83)
43 2cu7_A KIAA1915 protein; nucle 99.4 1.6E-13 5.6E-18 109.7 3.6 62 16-79 4-65 (72)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1E-12 3.5E-17 106.8 5.6 51 69-119 14-68 (73)
45 2yus_A SWI/SNF-related matrix- 99.3 2.9E-12 9.9E-17 105.2 6.3 52 14-66 11-62 (79)
46 1ign_A Protein (RAP1); RAP1,ye 99.3 1.6E-12 5.4E-17 126.4 4.4 71 69-140 4-80 (246)
47 2yus_A SWI/SNF-related matrix- 99.3 3.3E-12 1.1E-16 104.9 4.5 48 70-117 15-62 (79)
48 2llk_A Cyclin-D-binding MYB-li 99.2 1.2E-11 4.2E-16 100.5 6.3 55 17-74 19-73 (73)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.2 9.6E-12 3.3E-16 101.0 4.4 54 15-68 12-68 (73)
50 2juh_A Telomere binding protei 99.2 8.2E-12 2.8E-16 110.4 4.2 54 67-120 11-69 (121)
51 2ckx_A NGTRF1, telomere bindin 99.2 3E-11 1E-15 100.3 6.0 48 74-121 1-53 (83)
52 2cjj_A Radialis; plant develop 99.1 5.9E-11 2E-15 100.5 6.1 50 72-121 7-60 (93)
53 2aje_A Telomere repeat-binding 99.1 7.7E-11 2.6E-15 101.9 6.3 52 69-120 9-65 (105)
54 2roh_A RTBP1, telomere binding 99.1 5.9E-11 2E-15 105.1 5.3 51 70-120 28-83 (122)
55 1x58_A Hypothetical protein 49 99.1 8.4E-11 2.9E-15 93.3 5.5 49 72-120 7-58 (62)
56 2ltp_A Nuclear receptor corepr 98.7 1.1E-11 3.6E-16 103.4 0.0 53 16-69 11-63 (89)
57 2cjj_A Radialis; plant develop 98.9 9.2E-10 3.1E-14 93.2 4.5 48 20-67 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.8 3E-09 1E-13 82.8 5.4 47 72-118 11-57 (61)
59 3hm5_A DNA methyltransferase 1 98.8 5.2E-09 1.8E-13 88.9 6.1 65 57-125 18-87 (93)
60 2eqr_A N-COR1, N-COR, nuclear 98.7 1.3E-08 4.3E-13 79.3 6.3 54 14-68 5-58 (61)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.3E-08 4.3E-13 82.4 5.6 49 70-119 5-57 (72)
62 2iw5_B Protein corest, REST co 98.6 2.1E-08 7.3E-13 97.0 5.9 48 73-120 133-180 (235)
63 1x58_A Hypothetical protein 49 98.6 4.1E-08 1.4E-12 78.0 5.0 49 19-68 6-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.4 3.4E-07 1.1E-11 74.7 5.1 49 72-120 7-59 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3E-07 1E-11 74.4 4.8 47 20-67 7-56 (72)
66 2xag_B REST corepressor 1; ami 98.4 2.3E-07 7.9E-12 97.9 5.0 46 74-119 381-426 (482)
67 1fex_A TRF2-interacting telome 98.3 3.2E-07 1.1E-11 71.6 4.2 48 21-68 2-58 (59)
68 2iw5_B Protein corest, REST co 98.2 1.2E-06 4E-11 85.0 5.9 53 15-68 127-179 (235)
69 1wgx_A KIAA1903 protein; MYB D 98.2 1.3E-06 4.6E-11 71.2 5.1 47 22-68 9-58 (73)
70 1fex_A TRF2-interacting telome 98.1 3E-06 1E-10 66.1 4.7 47 73-119 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.1 1.4E-05 4.8E-10 80.2 10.6 101 20-120 109-275 (304)
72 4eef_G F-HB80.4, designed hema 97.9 3.2E-06 1.1E-10 69.2 1.4 43 73-115 20-66 (74)
73 2yqk_A Arginine-glutamic acid 97.8 3.2E-05 1.1E-09 60.7 6.1 49 68-116 4-53 (63)
74 1ug2_A 2610100B20RIK gene prod 97.8 2.1E-05 7.2E-10 66.8 5.2 45 75-119 35-82 (95)
75 2lr8_A CAsp8-associated protei 96.8 6.7E-06 2.3E-10 66.5 0.0 44 75-119 16-62 (70)
76 4eef_G F-HB80.4, designed hema 97.6 1.9E-05 6.4E-10 64.7 2.3 44 21-64 20-66 (74)
77 4iej_A DNA methyltransferase 1 97.5 0.00016 5.4E-09 61.6 6.2 60 62-125 23-87 (93)
78 2yqk_A Arginine-glutamic acid 97.4 0.00028 9.6E-09 55.2 5.9 51 15-66 3-54 (63)
79 2crg_A Metastasis associated p 97.3 0.00016 5.6E-09 57.8 4.3 43 73-115 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.3 0.00028 9.5E-09 59.5 5.1 45 73-117 43-87 (94)
81 2xag_B REST corepressor 1; ami 97.2 0.00028 9.7E-09 74.6 5.8 50 18-68 377-426 (482)
82 4b4c_A Chromodomain-helicase-D 97.2 0.0014 4.8E-08 60.7 9.9 103 18-120 4-196 (211)
83 2ebi_A DNA binding protein GT- 97.0 0.00031 1.1E-08 57.3 2.5 49 19-67 2-63 (86)
84 2y9y_A Imitation switch protei 96.9 0.0041 1.4E-07 64.1 10.9 100 21-120 123-291 (374)
85 4a69_C Nuclear receptor corepr 96.9 0.0012 4E-08 55.7 5.3 46 19-65 41-86 (94)
86 3hm5_A DNA methyltransferase 1 96.9 0.001 3.5E-08 56.5 5.0 47 20-67 29-80 (93)
87 2crg_A Metastasis associated p 96.8 0.002 6.8E-08 51.5 5.9 46 19-65 6-52 (70)
88 2ebi_A DNA binding protein GT- 96.8 0.001 3.5E-08 54.2 4.0 49 72-120 3-65 (86)
89 1ug2_A 2610100B20RIK gene prod 96.1 0.0079 2.7E-07 51.2 5.7 51 15-65 27-79 (95)
90 2lr8_A CAsp8-associated protei 93.8 0.0051 1.7E-07 49.8 0.0 50 17-67 10-61 (70)
91 4iej_A DNA methyltransferase 1 92.9 0.12 4E-06 44.0 4.9 46 21-67 30-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 92.7 0.28 9.6E-06 39.0 6.5 49 71-119 5-58 (64)
93 1irz_A ARR10-B; helix-turn-hel 92.0 0.26 8.9E-06 39.2 5.6 49 18-66 4-56 (64)
94 1ofc_X ISWI protein; nuclear p 91.5 0.23 7.9E-06 49.9 5.9 48 73-120 110-158 (304)
95 4b4c_A Chromodomain-helicase-D 88.9 0.36 1.2E-05 44.5 4.4 49 72-120 6-59 (211)
96 2xb0_X Chromo domain-containin 88.6 0.28 9.7E-06 48.4 3.7 28 22-49 169-196 (270)
97 2xb0_X Chromo domain-containin 64.1 9.9 0.00034 37.5 6.0 48 73-120 3-55 (270)
98 2o8x_A Probable RNA polymerase 55.0 13 0.00044 27.2 3.9 43 76-120 16-58 (70)
99 2y9y_A Imitation switch protei 50.2 20 0.00067 37.1 5.6 46 73-118 123-170 (374)
100 1ku3_A Sigma factor SIGA; heli 46.7 20 0.00068 27.1 3.9 44 76-121 11-58 (73)
101 2li6_A SWI/SNF chromatin-remod 44.4 20 0.00068 30.6 3.9 38 83-120 53-98 (116)
102 2p7v_B Sigma-70, RNA polymeras 42.5 19 0.00066 26.8 3.2 40 80-120 9-52 (68)
103 3hug_A RNA polymerase sigma fa 37.6 38 0.0013 26.7 4.4 41 79-120 40-80 (92)
104 2li6_A SWI/SNF chromatin-remod 34.6 21 0.0007 30.5 2.5 39 31-69 53-98 (116)
105 2lm1_A Lysine-specific demethy 33.5 49 0.0017 27.4 4.6 38 83-120 48-97 (107)
106 2q1z_A RPOE, ECF SIGE; ECF sig 32.9 47 0.0016 28.3 4.6 30 90-120 149-178 (184)
107 2cxy_A BAF250B subunit, HBAF25 32.8 62 0.0021 27.8 5.3 38 83-120 55-104 (125)
108 2jrz_A Histone demethylase jar 32.3 43 0.0015 28.6 4.1 38 83-120 44-93 (117)
109 3cz6_A DNA-binding protein RAP 31.7 38 0.0013 31.5 3.8 23 18-40 111-141 (168)
110 1kkx_A Transcription regulator 29.4 33 0.0011 29.7 3.0 38 83-120 52-97 (123)
111 3ulq_B Transcriptional regulat 29.1 80 0.0027 25.3 5.0 45 73-120 27-71 (90)
112 2p1m_A SKP1-like protein 1A; F 28.9 52 0.0018 29.1 4.2 36 44-86 118-153 (160)
113 2eqy_A RBP2 like, jumonji, at 28.2 58 0.002 27.9 4.3 38 83-120 46-95 (122)
114 1x3u_A Transcriptional regulat 27.8 64 0.0022 24.1 4.0 42 76-120 17-58 (79)
115 1or7_A Sigma-24, RNA polymeras 27.1 70 0.0024 27.4 4.6 29 91-120 155-183 (194)
116 1tty_A Sigma-A, RNA polymerase 26.4 63 0.0022 25.2 3.9 40 80-120 22-65 (87)
117 2jrz_A Histone demethylase jar 26.0 44 0.0015 28.5 3.1 40 30-69 43-93 (117)
118 3c57_A Two component transcrip 25.7 77 0.0026 25.3 4.4 43 75-120 27-69 (95)
119 1fse_A GERE; helix-turn-helix 25.3 1E+02 0.0035 22.4 4.7 44 74-120 10-53 (74)
120 2jxj_A Histone demethylase jar 24.8 40 0.0014 27.4 2.5 38 83-120 40-89 (96)
121 1c20_A DEAD ringer protein; DN 24.7 79 0.0027 27.2 4.5 38 83-120 56-106 (128)
122 1ig6_A MRF-2, modulator recogn 24.6 55 0.0019 27.2 3.4 38 83-120 37-87 (107)
123 2wyh_A Alpha-mannosidase; hydr 23.7 30 0.001 38.8 2.1 58 244-304 325-383 (923)
124 1je8_A Nitrate/nitrite respons 23.4 78 0.0027 24.6 3.9 43 75-120 21-63 (82)
125 3mzy_A RNA polymerase sigma-H 22.7 87 0.003 25.6 4.3 30 90-120 122-151 (164)
126 2rnj_A Response regulator prot 22.4 86 0.0029 24.5 4.0 42 76-120 30-71 (91)
127 2jpc_A SSRB; DNA binding prote 22.1 1.1E+02 0.0039 21.6 4.3 37 82-120 4-40 (61)
128 2cxy_A BAF250B subunit, HBAF25 21.3 57 0.0019 28.0 2.9 39 31-69 55-104 (125)
129 3cz6_A DNA-binding protein RAP 21.3 2.5E+02 0.0086 26.1 7.3 28 58-85 98-126 (168)
130 1xsv_A Hypothetical UPF0122 pr 20.5 95 0.0032 25.8 4.1 40 80-120 29-68 (113)
131 2lm1_A Lysine-specific demethy 20.1 57 0.0019 27.0 2.5 40 30-69 47-97 (107)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5e-33 Score=236.94 Aligned_cols=105 Identities=35% Similarity=0.732 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK 100 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk 100 (479)
+++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 57899999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHhhhhhhhh
Q 044977 101 VVSGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 101 ~LPGRTdnqcKNRW~slLkKr~K~~ 125 (479)
+|||||+++||+||+.++++..++.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 9999999999999999998866543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=1.2e-32 Score=232.62 Aligned_cols=103 Identities=40% Similarity=0.786 Sum_probs=98.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEI 98 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskI 98 (479)
.++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 46889999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCChhHHHHHHHHHhhhh
Q 044977 99 AKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 99 Ak~LPGRTdnqcKNRW~slLkKr 121 (479)
|++|||||+++|++||+.+++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999998864
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=7.2e-33 Score=243.54 Aligned_cols=109 Identities=37% Similarity=0.717 Sum_probs=104.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK 100 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk 100 (479)
+|+||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHhhhhhhhhhhhh
Q 044977 101 VVSGRTDNAVKNRFSTLCKKRAKYEALAK 129 (479)
Q Consensus 101 ~LPGRTdnqcKNRW~slLkKr~K~~~wtk 129 (479)
+|||||+++||+||+++++++....++.+
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999999999999877666543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=6.8e-32 Score=236.23 Aligned_cols=105 Identities=37% Similarity=0.767 Sum_probs=100.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRW 95 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrW 95 (479)
++..++++||+|||++|+++|..||. +|..||..|++|+++|||+||.++|+|.+++++||+|||.+|+++|.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 56678899999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 96 TEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 96 skIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
+.||++|||||+++||+||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998763
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.1e-31 Score=232.83 Aligned_cols=105 Identities=42% Similarity=0.787 Sum_probs=100.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWT 96 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWs 96 (479)
+..++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~ 102 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 102 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCCCChhHHHHHHHHHhhhh
Q 044977 97 EIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 97 kIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.||++|||||+++||+||+.+++++
T Consensus 103 ~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 103 EIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.9e-31 Score=239.25 Aligned_cols=121 Identities=28% Similarity=0.604 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTE 97 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWsk 97 (479)
.++++||+|||++|+++|..||.++|..||..|++|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 567899999999999999999998999999999999999999999999999999999999999999999999996 7999
Q ss_pred hchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 98 IAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 98 IAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
||.+|||||+++|++||++++++.++..+|+.+|+..++...
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999998776544
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.1e-29 Score=227.14 Aligned_cols=104 Identities=40% Similarity=0.790 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 044977 18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTE 97 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWsk 97 (479)
..++++||+|||++|+++|..||..+|..||..|++|++.||+.||.++|+|.+++++||++||.+|++++.+||++|+.
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~ 134 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 134 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHH
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHH
Confidence 45678999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCCCChhHHHHHHHHHhhhh
Q 044977 98 IAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 98 IAk~LPGRTdnqcKNRW~slLkKr 121 (479)
||++|||||+++||+||+.+++++
T Consensus 135 Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 135 IAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999998764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=2.7e-23 Score=181.47 Aligned_cols=93 Identities=28% Similarity=0.594 Sum_probs=68.1
Q ss_pred HhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977 47 IASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 47 IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~ 125 (479)
||+.|++|+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||.+++++..+.+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999996 69999999999999999999999999999999
Q ss_pred hhhhhhcccccCCC
Q 044977 126 ALAKENNNAYINPN 139 (479)
Q Consensus 126 ~wtkEEd~~lins~ 139 (479)
+|+.+|+..++...
T Consensus 81 ~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 81 SWTEEEDRIIYQAH 94 (128)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999998776544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=149.26 Aligned_cols=66 Identities=33% Similarity=0.699 Sum_probs=63.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHH
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEED 81 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EED 81 (479)
....++++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 355678899999999999999999988999999999999999999999999999999999999998
No 10
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=3.2e-18 Score=151.25 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=81.6
Q ss_pred CCcccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhccC-----CCCCCC-CCCH
Q 044977 9 GSNEESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYLN-----SDFKKG-GWSP 78 (479)
Q Consensus 9 ~~~~~skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L~-----P~IkKg-~WT~ 78 (479)
.+.....+.++++++||+|||+.|+++|.+||.++|+.|++.+ ++||+.+|++||.++++ |.++++ +|++
T Consensus 5 k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~ 84 (121)
T 2juh_A 5 KSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQ 84 (121)
T ss_dssp CCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCH
T ss_pred cCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCH
Confidence 3444556678889999999999999999999999999999984 89999999999999998 999999 9999
Q ss_pred HHHHHHHHHHHHhCCchhh
Q 044977 79 EEDMLLCEAQKIFGNRWTE 97 (479)
Q Consensus 79 EEDelLLelvkk~GnrWsk 97 (479)
+|+.+|++++..|||+|++
T Consensus 85 e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 85 DLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHccchhc
Confidence 9999999999999999987
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=7e-18 Score=163.63 Aligned_cols=105 Identities=23% Similarity=0.364 Sum_probs=91.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhHhhhcCCCChhhhhhhhhhccCCCCC-------------------
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTEN-----WSIIASKFKDKTTRQCRRRWYTYLNSDFK------------------- 72 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~n-----Ws~IAk~lpgRT~kQCReRW~n~L~P~Ik------------------- 72 (479)
+...+++||+|||++|+++|.++|..+ |..||+.|+|||+.|||.||.++|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 445677999999999999999998643 99999999999999999999999999986
Q ss_pred ----------CCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 044977 73 ----------KGGWSPEEDMLLCEAQKI-F--------------------------------GN---------------- 93 (479)
Q Consensus 73 ----------Kg~WT~EEDelLLelvkk-~--------------------------------Gn---------------- 93 (479)
+..||.+||-.|+..+.+ | |.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999877 2 11
Q ss_pred ---------chhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 94 ---------RWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 94 ---------rWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.|..||+.+|+||.+++|+||+.+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988764
No 12
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=3.5e-17 Score=144.81 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=75.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhcc-----CCCCCCCCCCHHH-HHHH
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYL-----NSDFKKGGWSPEE-DMLL 84 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L-----~P~IkKg~WT~EE-DelL 84 (479)
.+.++++++||+|||+.|+++|++||.++|..|++.+ ++||+.+|++||.|++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 4566788899999999999999999999999999974 7999999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCch
Q 044977 85 CEAQKIFGNRW 95 (479)
Q Consensus 85 Lelvkk~GnrW 95 (479)
+++|..|||+=
T Consensus 105 ~~~h~~~g~~~ 115 (122)
T 2roh_A 105 LAAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHHSSC
T ss_pred HHHHHHHhhHH
Confidence 99999999863
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=135.22 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=47.9
Q ss_pred hhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 59 CRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 59 CReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
..-||.++|+|++++++||+|||++|++++.+||++|++||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 9999999999986543
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=129.87 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhc
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENN 132 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd 132 (479)
.|.+++++||+|||.+|+++|.+|| ++|..||.+|+|||+.|||+||+++|++.+++++|+.+|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5788999999999999999999999 8999999999999999999999999999999999998876
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=1.1e-16 Score=126.96 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=59.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccCCCCCCCCCC
Q 044977 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLNSDFKKGGWS 77 (479)
Q Consensus 14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~P~IkKg~WT 77 (479)
.+++++++++||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 345667889999999999999999999889999999999 9999999999999999999988764
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=125.36 Aligned_cols=60 Identities=30% Similarity=0.418 Sum_probs=56.4
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhh
Q 044977 65 TYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 65 n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~ 125 (479)
.||+|.+++++||+|||.+|++++..||++|.+||. ++|||++|||+||++++++.++.+
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 889999999999999999877654
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.6e-16 Score=120.61 Aligned_cols=56 Identities=32% Similarity=0.703 Sum_probs=52.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCC
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFK 72 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~Ik 72 (479)
+..++++||+|||++|+++|..||..+|..||..|++|++.||++||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 45678899999999999999999988999999999999999999999999999875
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=3.2e-16 Score=117.71 Aligned_cols=51 Identities=35% Similarity=0.709 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~ 70 (479)
++++||+|||++|+++|..||.++|..||..|++|+++|||+||.++|+|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999889999999999999999999999999985
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.61 E-value=4.8e-16 Score=124.39 Aligned_cols=58 Identities=31% Similarity=0.420 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhh
Q 044977 67 LNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKY 124 (479)
Q Consensus 67 L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~ 124 (479)
.+|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=4.5e-16 Score=116.71 Aligned_cols=51 Identities=33% Similarity=0.789 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~ 70 (479)
++++||+|||++|+++|..||.++|..||+.|++|++.||+.||.++|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999889999999999999999999999999985
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.6e-16 Score=118.48 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhh
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRA 122 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~ 122 (479)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||++++++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998754
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=2.1e-15 Score=119.23 Aligned_cols=54 Identities=20% Similarity=0.495 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccCCCCC
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLNSDFK 72 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~P~Ik 72 (479)
.++++||+|||++|+++|.+||.++|..||+.++ +|++.|||+||.|+++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4567899999999999999999999999999976 99999999999999998764
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.56 E-value=3.1e-15 Score=112.18 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+++++||+|||.+|+++|.+||+ +|..||.+|||||+.||++||++++++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999999875
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.53 E-value=5.8e-15 Score=110.83 Aligned_cols=50 Identities=32% Similarity=0.613 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+++++||+|||.+|+++|.+||. +|..||.+|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999998865
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=9.1e-15 Score=110.49 Aligned_cols=49 Identities=31% Similarity=0.545 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC--CCChhhhhhhhhhccC
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFK--DKTTRQCRRRWYTYLN 68 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lp--gRT~kQCReRW~n~L~ 68 (479)
++++||+|||++|+++|..||.++|..||..|+ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999999889999999999 9999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.4e-14 Score=112.29 Aligned_cols=53 Identities=26% Similarity=0.505 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCC
Q 044977 18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSD 70 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~ 70 (479)
...+++||+|||++|+++|..||.++|..||++|++|+++|||+||.++|.+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 46778999999999999999999889999999999999999999999999875
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=1.5e-14 Score=109.28 Aligned_cols=49 Identities=31% Similarity=0.495 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkK 120 (479)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999874
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.50 E-value=1.5e-14 Score=114.62 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhhhhh
Q 044977 66 YLNSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKKRAK 123 (479)
Q Consensus 66 ~L~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkKr~K 123 (479)
...|..++++||+|||.+|+++|.+|| ++|+.||.+|+ |||+.|||+||++++++.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 456778899999999999999999999 79999999999 99999999999999998654
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.8e-14 Score=111.69 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.+.+.+++||+|||.+|+++|.+|| ++|.+||++|||||+.|||+||.+++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 8999999999999999999999988754
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.49 E-value=9.8e-15 Score=127.57 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=67.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
.+..++++||+|||++|+++|.+||.+|..||..|||||+.||+.||++++.+..++++|+.+|+..++...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v 77 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKI 77 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999998877654
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.49 E-value=7.3e-15 Score=123.79 Aligned_cols=70 Identities=24% Similarity=0.492 Sum_probs=65.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 70 DFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 70 ~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
++++++||+|||.+|+++|.+||. +|..||.+|||||+.||+.||.+++.+..+.++|+.+|+..++...
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~ 71 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 71 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHH
Confidence 468999999999999999999996 7999999999999999999999999999999999999998777544
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.5e-14 Score=114.76 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhchhcCCCChhHHHHHHHHHhhhhhh
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFG------NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAK 123 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~G------nrWskIAk~LPGRTdnqcKNRW~slLkKr~K 123 (479)
+|.+.+++||+|||++|++++.+|| ++|.+||.+|+|||+.||++||++++.+..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7999999999999999999999988877543
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.47 E-value=5.7e-14 Score=121.41 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=71.6
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc----CCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHH
Q 044977 12 EESKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKF----KDKTTRQCRRRWYTYL-----NSDFKKGGWSPEEDM 82 (479)
Q Consensus 12 ~~skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~l----pgRT~kQCReRW~n~L-----~P~IkKg~WT~EEDe 82 (479)
....++++++++||+|||+.|+++|.+||.++|..|++.+ ++||..+|++||.+++ +|.+++|.-+|+|-.
T Consensus 4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l 83 (105)
T 2aje_A 4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL 83 (105)
T ss_dssp -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence 4456677889999999999999999999999999999976 7999999999999998 699999999999887
Q ss_pred H-HHHHHHHhCCc
Q 044977 83 L-LCEAQKIFGNR 94 (479)
Q Consensus 83 l-LLelvkk~Gnr 94 (479)
. +++++..+|+.
T Consensus 84 ~rv~~~~~~~~~~ 96 (105)
T 2aje_A 84 NRVLNAHGYWTQQ 96 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6 89999887753
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=4.5e-14 Score=109.00 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhhhhhhcc
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYL 67 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCReRW~n~L 67 (479)
..+++||+|||++|+++|.+||.++|..||++|+ +|+++|||+||.+++
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999889999999999 999999999999875
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=113.96 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=55.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCC
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGT-----ENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGW 76 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~-----~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~W 76 (479)
+....+++||+|||++|+++|..||. .+|..||.+|++||..|||.||.+||.+.++.|-.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 45677889999999999999999996 68999999999999999999999999988777643
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.43 E-value=3.8e-14 Score=120.47 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 73 KGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
++.||+|||.+|+++|..||. +|..||..|||||+.||+.||.+++.+.++.++|+.+|+..++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~ 68 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKY 68 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHH
Confidence 588999999999999999995 8999999999999999999999999999999999999998776544
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-14 Score=111.83 Aligned_cols=56 Identities=20% Similarity=0.424 Sum_probs=51.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCC
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKG 74 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg 74 (479)
+..++++||+|||++|+++|..||. +|..||+ +++|+++|||.||.++|+|.++++
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 4567889999999999999999997 9999999 889999999999999999877664
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.5e-13 Score=106.12 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC-CCChhHHHHHHHHHh
Q 044977 69 SDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS-GRTDNAVKNRFSTLC 118 (479)
Q Consensus 69 P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP-GRTdnqcKNRW~slL 118 (479)
..+.+++||++||.+|+++|.+|| ++|.+||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998764
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=121.12 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=53.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 66 YLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 66 ~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.+.|.+++++||+|||.+|+++|..||++|..||.+|||||++|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999998764
No 40
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.42 E-value=1.3e-13 Score=108.96 Aligned_cols=51 Identities=27% Similarity=0.485 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhchhcC--CCChhHHHHHHHHHhhhh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVS--GRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~G-nrWskIAk~LP--GRTdnqcKNRW~slLkKr 121 (479)
.++++||+|||++|+++|.+|| ++|+.||+.++ |||+.|||+||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4689999999999999999999 58999999865 999999999999998764
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.42 E-value=6.4e-14 Score=122.97 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCC
Q 044977 73 KGGWSPEEDMLLCEAQKIFG-NRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPN 139 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G-nrWskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~ 139 (479)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.+++.+..++++|+.+|+..++..+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~ 69 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNY 69 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHH
Confidence 68999999999999999999 68999999999999999999999999999999999999998776543
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.39 E-value=5.9e-13 Score=110.53 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhHhhh----cCCCChhhhhhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 044977 22 VTWTQQEDDILREQISIHGTENWSIIASK----FKDKTTRQCRRRWYTYL-----NSDFKKG-GWSPEEDMLLCEAQKI 90 (479)
Q Consensus 22 g~WT~EEDekL~elV~k~G~~nWs~IAk~----lpgRT~kQCReRW~n~L-----~P~IkKg-~WT~EEDelLLelvkk 90 (479)
++||+|||+.|+++|++||.++|..|++. |++||+.+|++||.|++ +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999996 89999999999999987 6777765 5677777889998875
No 43
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=1.6e-13 Score=109.65 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=54.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHH
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPE 79 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~E 79 (479)
.+..++++||+|||++|+++|..||. +|..||.+|++|+..||+.||.++|++.++. .+.++
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~ 65 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE 65 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 34667899999999999999999997 9999999999999999999999999887665 44443
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=1e-12 Score=106.77 Aligned_cols=51 Identities=20% Similarity=0.422 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 69 SDFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 69 P~IkKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
+.+.+++||++||.+|++++..|| ++|.+||.+|||||+++|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 789999999999999999999998875
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=105.22 Aligned_cols=52 Identities=19% Similarity=0.421 Sum_probs=48.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhc
Q 044977 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTY 66 (479)
Q Consensus 14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~ 66 (479)
+++....+++||+|||++|+++|..|| ++|..||++|++||..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 455556788999999999999999999 7999999999999999999999998
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.27 E-value=1.6e-12 Score=126.35 Aligned_cols=71 Identities=21% Similarity=0.410 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhchhcCCCChhHHHHHHHHHhhhhhhhhhhhhhhcccccCCCC
Q 044977 69 SDFKKGGWSPEEDMLLCEAQKIFGNR------WTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNNAYINPNN 140 (479)
Q Consensus 69 P~IkKg~WT~EEDelLLelvkk~Gnr------WskIAk~LPGRTdnqcKNRW~slLkKr~K~~~wtkEEd~~lins~~ 140 (479)
+.+++++||+|||++|+++|.++|++ |..||++|||||+++||+||+++|++++.+. |..+++..++....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~ 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence 45788999999999999999999986 9999999999999999999999999987755 77777766655443
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=104.90 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977 70 DFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 70 ~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
...+++||+|||.+|++++.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999754
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=100.48 Aligned_cols=55 Identities=20% Similarity=0.449 Sum_probs=47.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCCCCCCC
Q 044977 17 KERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNSDFKKG 74 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P~IkKg 74 (479)
+..++++||+|||++|+++|..||. +|..||+.| +|++.||+.||.. |....+.|
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHccCC
Confidence 4567889999999999999999996 599999999 9999999999974 65555443
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=9.6e-12 Score=101.04 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=47.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
.+.+..+++||+|||.+|.++|..||. .+|..||++|||||.+||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344557789999999999999999993 479999999999999999999998764
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=8.2e-12 Score=110.42 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977 67 LNSDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 67 L~P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK 120 (479)
+.+..++++||+|||+.|+++|.+||+ +|+.|+..+ +|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456678999999999999999999997 999999984 999999999999999984
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.16 E-value=3e-11 Score=100.33 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhchh----cCCCChhHHHHHHHHHhhhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGN-RWTEIAKV----VSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~Gn-rWskIAk~----LPGRTdnqcKNRW~slLkKr 121 (479)
.+||+|||+.|+++|.+||+ +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999997 99999996 89999999999999998753
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=5.9e-11 Score=100.49 Aligned_cols=50 Identities=28% Similarity=0.601 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.+++||+|||++|++++..|| ++|.+||.+|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 78999999999999999999999988654
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.10 E-value=7.7e-11 Score=101.87 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977 69 SDFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 69 P~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK 120 (479)
+..++++||+|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999997 999999965 899999999999999975
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.10 E-value=5.9e-11 Score=105.10 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhchhc----CCCChhHHHHHHHHHhhh
Q 044977 70 DFKKGGWSPEEDMLLCEAQKIFGN-RWTEIAKVV----SGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 70 ~IkKg~WT~EEDelLLelvkk~Gn-rWskIAk~L----PGRTdnqcKNRW~slLkK 120 (479)
..++++||+|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||+++++.
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 446889999999999999999996 999999974 899999999999999964
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.09 E-value=8.4e-11 Score=93.31 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhc---hhcCCCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFGNRWTEIA---KVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~GnrWskIA---k~LPGRTdnqcKNRW~slLkK 120 (479)
++.+||+|||+.|++.|++||.+|+.|+ .+++|||+-++|+||+++.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 577999999999999999875
No 56
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-11 Score=103.42 Aligned_cols=53 Identities=28% Similarity=0.569 Sum_probs=48.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccCC
Q 044977 16 KKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLNS 69 (479)
Q Consensus 16 Kkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~P 69 (479)
-....+++||+|||++|+++|..||. +|..||..|++||..||+.||.++|+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 34567889999999999999999997 899999999999999999999999863
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.89 E-value=9.2e-10 Score=93.19 Aligned_cols=48 Identities=10% Similarity=0.427 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChhhHhhhcCCCChhhhhhhhhhcc
Q 044977 20 HIVTWTQQEDDILREQISIHG---TENWSIIASKFKDKTTRQCRRRWYTYL 67 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G---~~nWs~IAk~lpgRT~kQCReRW~n~L 67 (479)
.+++||+|||.+|.+++..|| ..+|..||..|||||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999998 457999999999999999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=82.85 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLC 118 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slL 118 (479)
..++||++|+.++++++..||++|..||.+|||||..+|+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999997554
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.80 E-value=5.2e-09 Score=88.89 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=58.6
Q ss_pred hhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhc-----CCCChhHHHHHHHHHhhhhhhhh
Q 044977 57 RQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVV-----SGRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 57 kQCReRW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~L-----PGRTdnqcKNRW~slLkKr~K~~ 125 (479)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++-.+..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999986 79999999999999999999999999999 58999999999999998765443
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.3e-08 Score=79.29 Aligned_cols=54 Identities=24% Similarity=0.512 Sum_probs=47.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 14 SKKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 14 skKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
+.+.+....+||+||++++.+++..|| .+|..||..|++|+..||+.+|+...+
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 445556778999999999999999999 589999999999999999999976543
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=1.3e-08 Score=82.45 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 70 DFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 70 ~IkKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
..+.+.||.|||++|.+++.+|+ ++|.+||.++ |||..+|++||+.+.+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999997 6899999998 9999999999988754
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.65 E-value=2.1e-08 Score=96.98 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.++||+||+.++++++.+||++|..||+.|++||.+|||++|++..++
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999977655
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.59 E-value=4.1e-08 Score=77.96 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhh---hcCCCChhhhhhhhhhccC
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIAS---KFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk---~lpgRT~kQCReRW~n~L~ 68 (479)
+.+.+||+|||+.|++.|++||. +|..|+. .+++|+...+..||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 46779999999999999999997 9999994 6679999999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.37 E-value=3.4e-07 Score=74.70 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFG----NRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~G----nrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
....||.+|+++|.+++..|+ ++|.+||.+|||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999998 4799999999999999999999887553
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=3e-07 Score=74.37 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhcc
Q 044977 20 HIVTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYL 67 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L 67 (479)
..+.||.|||.+|.+++..|+. .+|..||..+ +|+..+|+.||....
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4568999999999999999984 4699999998 799999999998654
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.36 E-value=2.3e-07 Score=97.85 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
..||++|-.++++++.+||.+|..||.+++.||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999976544
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=3.2e-07 Score=71.59 Aligned_cols=48 Identities=13% Similarity=0.333 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhHhh-hcCCCChhhhhhhhhhccC
Q 044977 21 IVTWTQQEDDILREQISIH--------GTENWSIIAS-KFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~--------G~~nWs~IAk-~lpgRT~kQCReRW~n~L~ 68 (479)
|.+||+|||..|.++|..| |..-|..+++ .++.+|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 4335999999 8999999999999999885
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.22 E-value=1.2e-06 Score=84.96 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=47.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
....+...+||+||+.++++++..|| .+|..||+.+++||..||+.+|+++.+
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34446678999999999999999999 589999999999999999999998875
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.20 E-value=1.3e-06 Score=71.17 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 22 VTWTQQEDDILREQISIHGT---ENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 22 g~WT~EEDekL~elV~k~G~---~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
..||.+|+.+|.+++..|+. ++|..||..+|+|+..+|+.||...+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 57999999999999999975 479999999999999999999987654
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.08 E-value=3e-06 Score=66.05 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhch-hcCCCChhHHHHHHHHHhh
Q 044977 73 KGGWSPEEDMLLCEAQKIF--------GNR-WTEIAK-VVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~--------Gnr-WskIAk-~LPGRTdnqcKNRW~slLk 119 (479)
|.+||+|||..|++.|..+ ||. |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 8999999999999987653
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=1.4e-05 Score=80.17 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhh----hhhc-----------------------------
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRR----WYTY----------------------------- 66 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReR----W~n~----------------------------- 66 (479)
.=+.||..+...++.++.+||..+|..||..|++++...++.- |.+|
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346999999999999999999999999999999997665321 1111
Q ss_pred -----------------cCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhch------------hcCCCChhHHHHH
Q 044977 67 -----------------LNSDFKKGGWSPEEDMLLCEAQKIFG----NRWTEIAK------------VVSGRTDNAVKNR 113 (479)
Q Consensus 67 -----------------L~P~IkKg~WT~EEDelLLelvkk~G----nrWskIAk------------~LPGRTdnqcKNR 113 (479)
..+..+...||++||..|+-++.+|| +.|..|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 01223456899999999999999999 47999962 4577999999999
Q ss_pred HHHHhhh
Q 044977 114 FSTLCKK 120 (479)
Q Consensus 114 W~slLkK 120 (479)
.+++++-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.87 E-value=3.2e-06 Score=69.23 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhchhcCCCChhHHHHHHH
Q 044977 73 KGGWSPEEDMLLCEAQKIFGN----RWTEIAKVVSGRTDNAVKNRFS 115 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gn----rWskIAk~LPGRTdnqcKNRW~ 115 (479)
...||.+|+++|..+...|+. ||.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 8999999999999999999984
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=3.2e-05 Score=60.67 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhch-hcCCCChhHHHHHHHH
Q 044977 68 NSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAK-VVSGRTDNAVKNRFST 116 (479)
Q Consensus 68 ~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk-~LPGRTdnqcKNRW~s 116 (479)
.|.+....||+||-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467778899999999999999999999999999 5899999999988863
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.79 E-value=2.1e-05 Score=66.82 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhchhcCCCChhHHHHHHHHHhh
Q 044977 75 GWSPEEDMLLCEAQKIFGN---RWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~Gn---rWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
-||.+||..||...++-|. .|+.||+.|.+|+++||++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4999999999999999986 89999999999999999999999876
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.82 E-value=6.7e-06 Score=66.51 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhchhcCCCChhHHHHHHHHHhh
Q 044977 75 GWSPEEDMLLCEAQKIFGN---RWTEIAKVVSGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~Gn---rWskIAk~LPGRTdnqcKNRW~slLk 119 (479)
-||.|||..||..+++-|. .|..||..| +||++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 4999999999999999997 799999999 9999999999998765
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.62 E-value=1.9e-05 Score=64.72 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhhHhhhcCCCChhhhhhhhh
Q 044977 21 IVTWTQQEDDILREQISIHGTE---NWSIIASKFKDKTTRQCRRRWY 64 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~---nWs~IAk~lpgRT~kQCReRW~ 64 (479)
...||.||+.+|..++..|+.+ +|.+||..+|||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999754 7999999999999999999974
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.48 E-value=0.00016 Score=61.55 Aligned_cols=60 Identities=23% Similarity=0.445 Sum_probs=50.4
Q ss_pred hhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhchhcC-----CCChhHHHHHHHHHhhhhhhhh
Q 044977 62 RWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVS-----GRTDNAVKNRFSTLCKKRAKYE 125 (479)
Q Consensus 62 RW~n~L~P~IkKg~WT~EEDelLLelvkk~GnrWskIAk~LP-----GRTdnqcKNRW~slLkKr~K~~ 125 (479)
.|..+|. ...||.||...|++++++|+-+|..|+..+. +||-.++|.||..+.++-.+..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444554 2589999999999999999999999999873 7999999999999998865543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00028 Score=55.25 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhHhh-hcCCCChhhhhhhhhhc
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGTENWSIIAS-KFKDKTTRQCRRRWYTY 66 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~~nWs~IAk-~lpgRT~kQCReRW~n~ 66 (479)
..+......||+||-.+..+++..||. +|..|++ .+++|+..+|.+-|+..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 345666789999999999999999996 8999999 58999999998887643
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.34 E-value=0.00016 Score=57.82 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhch-hcCCCChhHHHHHHH
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAK-VVSGRTDNAVKNRFS 115 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk-~LPGRTdnqcKNRW~ 115 (479)
...||++|-.+..+++.+||.+|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999999999999 599999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.27 E-value=0.00028 Score=59.50 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHH
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL 117 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~sl 117 (479)
...||++|..+..+++..||.+|..||..||+||..+|-.+|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 457999999999999999999999999999999999999988643
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.22 E-value=0.00028 Score=74.62 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhhccC
Q 044977 18 ERHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYTYLN 68 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n~L~ 68 (479)
.+...+||.||-.++++++.+||. +|..||..+++|+..||+..|.++-+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356779999999999999999995 99999999999999999999876543
No 82
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.22 E-value=0.0014 Score=60.69 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=70.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCChhhHhhh--cCCCChhhhhh----hhh---h---------------------
Q 044977 18 ERHIVTWTQQEDDILREQISIHG--TENWSIIASK--FKDKTTRQCRR----RWY---T--------------------- 65 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G--~~nWs~IAk~--lpgRT~kQCRe----RW~---n--------------------- 65 (479)
+.....||..|-..|+.++.+|| .++|..|+.. +.+|+...++. -|. .
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 34556899999999999999999 5689999975 55776543221 000 0
Q ss_pred -----------------------cc----------------C----CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhchh
Q 044977 66 -----------------------YL----------------N----SDFKKGGWSPEEDMLLCEAQKIFG-NRWTEIAKV 101 (479)
Q Consensus 66 -----------------------~L----------------~----P~IkKg~WT~EEDelLLelvkk~G-nrWskIAk~ 101 (479)
.| . +......||.+||..||..+.+|| ++|..|-.-
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 00 0 111123599999999999999999 999998552
Q ss_pred --c----------CCCC--hhHHHHHHHHHhhh
Q 044977 102 --V----------SGRT--DNAVKNRFSTLCKK 120 (479)
Q Consensus 102 --L----------PGRT--dnqcKNRW~slLkK 120 (479)
+ ..|+ ...+..|..++++-
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 1 1344 45789999888764
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.96 E-value=0.00031 Score=57.26 Aligned_cols=49 Identities=27% Similarity=0.496 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC------C---ChhhHhhhcC----CCChhhhhhhhhhcc
Q 044977 19 RHIVTWTQQEDDILREQISIHGT------E---NWSIIASKFK----DKTTRQCRRRWYTYL 67 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~------~---nWs~IAk~lp----gRT~kQCReRW~n~L 67 (479)
++...||.+|...|+++...+.. . -|..||..|. .|++.||+.+|.|..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999866421 1 4999999986 699999999998743
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.93 E-value=0.0041 Score=64.05 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-CCChhhhhh----hhhhc-----------------------------
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRR----RWYTY----------------------------- 66 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-gRT~kQCRe----RW~n~----------------------------- 66 (479)
=+.||.-+=..++.++.+||..+-..||..|. +++...++. -|.+|
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999998 888766541 12111
Q ss_pred --------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhchh------------cCCCChhHHH
Q 044977 67 --------------L----NSD-FKKGGWSPEEDMLLCEAQKIFG----NRWTEIAKV------------VSGRTDNAVK 111 (479)
Q Consensus 67 --------------L----~P~-IkKg~WT~EEDelLLelvkk~G----nrWskIAk~------------LPGRTdnqcK 111 (479)
| .+. .+...||++||..||-++.+|| +.|.+|-.. +..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 111 1345799999999999999998 579999432 4679999999
Q ss_pred HHHHHHhhh
Q 044977 112 NRFSTLCKK 120 (479)
Q Consensus 112 NRW~slLkK 120 (479)
.|..++++-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.88 E-value=0.0012 Score=55.69 Aligned_cols=46 Identities=30% Similarity=0.589 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhhhcCCCChhhhhhhhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
.....||+||.+++.+.+..||. +|..||..+++|+..+|.+.|+.
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHhc
Confidence 34678999999999999999994 89999999999999999887653
No 86
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.87 E-value=0.001 Score=56.47 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhHhhhc-----CCCChhhhhhhhhhcc
Q 044977 20 HIVTWTQQEDDILREQISIHGTENWSIIASKF-----KDKTTRQCRRRWYTYL 67 (479)
Q Consensus 20 krg~WT~EEDekL~elV~k~G~~nWs~IAk~l-----pgRT~kQCReRW~n~L 67 (479)
...+||.||+..|.+++++|+. +|..|+..+ ++|+..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999995 899999999 4799999999998754
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.80 E-value=0.002 Score=51.50 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhHhh-hcCCCChhhhhhhhhh
Q 044977 19 RHIVTWTQQEDDILREQISIHGTENWSIIAS-KFKDKTTRQCRRRWYT 65 (479)
Q Consensus 19 rkrg~WT~EEDekL~elV~k~G~~nWs~IAk-~lpgRT~kQCReRW~n 65 (479)
.....||+||-.+..+++..||. +|..|++ .+++|+..+|..-|+.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45668999999999999999996 8999999 5999999999888764
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.77 E-value=0.001 Score=54.20 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------chhhhchhcC----CCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFGN----------RWTEIAKVVS----GRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~Gn----------rWskIAk~LP----GRTdnqcKNRW~slLkK 120 (479)
+...||.+|-.+||+++..+.. .|..||..|. .||+.||+++|.++.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999976431 4999999873 69999999999998764
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.13 E-value=0.0079 Score=51.22 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=44.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCC--CChhhHhhhcCCCChhhhhhhhhh
Q 044977 15 KKKERHIVTWTQQEDDILREQISIHGT--ENWSIIASKFKDKTTRQCRRRWYT 65 (479)
Q Consensus 15 kKkkrkrg~WT~EEDekL~elV~k~G~--~nWs~IAk~lpgRT~kQCReRW~n 65 (479)
.++-.+-.-||.|||..++...++.|. ..|..||+.+++|+..|+++|++.
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 344456678999999999999999975 369999999999999999999876
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.79 E-value=0.0051 Score=49.85 Aligned_cols=50 Identities=24% Similarity=0.518 Sum_probs=42.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCC--CChhhHhhhcCCCChhhhhhhhhhcc
Q 044977 17 KERHIVTWTQQEDDILREQISIHGT--ENWSIIASKFKDKTTRQCRRRWYTYL 67 (479)
Q Consensus 17 kkrkrg~WT~EEDekL~elV~k~G~--~nWs~IAk~lpgRT~kQCReRW~n~L 67 (479)
+.-.-..||.|||..|+..+++.|. ..|..||..+ +|++.|+..|+...+
T Consensus 10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 3345568999999999999999886 3699999999 899999999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.90 E-value=0.12 Score=43.99 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhHhhhcC-----CCChhhhhhhhhhcc
Q 044977 21 IVTWTQQEDDILREQISIHGTENWSIIASKFK-----DKTTRQCRRRWYTYL 67 (479)
Q Consensus 21 rg~WT~EEDekL~elV~k~G~~nWs~IAk~lp-----gRT~kQCReRW~n~L 67 (479)
-..||.||...|.++++++.- +|--|+.... .|+..+.++||+.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 357999999999999999995 8999999874 689999999998754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.66 E-value=0.28 Score=39.02 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhhhchhc--CCCChhHHHHHHHHHhh
Q 044977 71 FKKGGWSPEEDMLLCEAQKIFGNR---WTEIAKVV--SGRTDNAVKNRFSTLCK 119 (479)
Q Consensus 71 IkKg~WT~EEDelLLelvkk~Gnr---WskIAk~L--PGRTdnqcKNRW~slLk 119 (479)
..+-.||+|.....++++..+|.. +..|-+.| +|.|..+|+.|.+.+.-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 346679999999999999999965 67898876 78999999999876543
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.02 E-value=0.26 Score=39.21 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--hhhHhhhcC--CCChhhhhhhhhhc
Q 044977 18 ERHIVTWTQQEDDILREQISIHGTEN--WSIIASKFK--DKTTRQCRRRWYTY 66 (479)
Q Consensus 18 krkrg~WT~EEDekL~elV~k~G~~n--Ws~IAk~lp--gRT~kQCReRW~n~ 66 (479)
++.+..||+|.-+.++++|...|... |..|.+.|+ +.|..++..+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 56778999999999999999999542 889999887 67888888877665
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.48 E-value=0.23 Score=49.87 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gn-rWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
-+.||..+...++.+..+||. .|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999995 799999999999999998877766653
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.88 E-value=0.36 Score=44.48 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---Cchhhhchh--cCCCChhHHHHHHHHHhhh
Q 044977 72 KKGGWSPEEDMLLCEAQKIFG---NRWTEIAKV--VSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 72 kKg~WT~EEDelLLelvkk~G---nrWskIAk~--LPGRTdnqcKNRW~slLkK 120 (479)
....||..|-..|+.++.+|| .+|..|+.. |.+||..+|+.++..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 589999875 7899999999988776654
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.59 E-value=0.28 Score=48.42 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhHhh
Q 044977 22 VTWTQQEDDILREQISIHGTENWSIIAS 49 (479)
Q Consensus 22 g~WT~EEDekL~elV~k~G~~nWs~IAk 49 (479)
..|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999985
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=64.13 E-value=9.9 Score=37.46 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cchhhhch--hcCCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFG---NRWTEIAK--VVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~G---nrWskIAk--~LPGRTdnqcKNRW~slLkK 120 (479)
+++||..|-..|++++.+|| .||..|+. .|+.|+...++.-|..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 67899999999999999999 58999987 47899999999999877764
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.98 E-value=13 Score=27.21 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+++ .+..++.++...|-.+.+||..+ |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44456666667788999999999 89999999988776654
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=50.19 E-value=20 Score=37.09 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhchhcC-CCChhHHHHHHHHHh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGN-RWTEIAKVVS-GRTDNAVKNRFSTLC 118 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~Gn-rWskIAk~LP-GRTdnqcKNRW~slL 118 (479)
.+.||.-+=..++.+..+||. .-..||..|. |+|..+|+.++....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 457999999999999999995 5999999997 999999995554443
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.70 E-value=20 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhhchhcCCCChhHHHHHHHHHhhhh
Q 044977 76 WSPEEDMLLCEAQKI----FGNRWTEIAKVVSGRTDNAVKNRFSTLCKKR 121 (479)
Q Consensus 76 WT~EEDelLLelvkk----~GnrWskIAk~LPGRTdnqcKNRW~slLkKr 121 (479)
.++.| ..++.++.- .|-.|.+||..+ |-|...|+.+....+++-
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444 445555543 567899999999 899999999887776653
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=44.44 E-value=20 Score=30.55 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|..+|.+.|+ .|..||..|.--....+|.+|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47777888884 799999998444488999999888765
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.48 E-value=19 Score=26.76 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHHH----HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 80 EDMLLCEAQK----IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 80 EDelLLelvk----k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.+..++.++. ..|-.+.+||..+ |-|...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3344455544 2477899999999 89999999998877765
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.56 E-value=38 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 79 EEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 79 EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+.+..++.++...|-...+||..+ |-+...|+.|....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556667667788899999999 89999999998776655
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.61 E-value=21 Score=30.46 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CChhhHhhhcCCCChhhhhhhhhhccCC
Q 044977 31 ILREQISIHGT-------ENWSIIASKFKDKTTRQCRRRWYTYLNS 69 (479)
Q Consensus 31 kL~elV~k~G~-------~nWs~IAk~lpgRT~kQCReRW~n~L~P 69 (479)
+|..+|.+.|. +.|..||..|+.-.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46677777762 2699999999865578888888888864
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=33.53 E-value=49 Score=27.43 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CchhhhchhcCCCC----hhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFG--------NRWTEIAKVVSGRT----DNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~G--------nrWskIAk~LPGRT----dnqcKNRW~slLkK 120 (479)
.|..+|.+.| +.|.+||..|.--. ...+|.+|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4666677777 37999999983222 46888988877754
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.91 E-value=47 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=25.1
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-.+.+||..+ |-|...|++|....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467899999999 89999999998876654
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=32.84 E-value=62 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCCC----hhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGRT----DNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGRT----dnqcKNRW~slLkK 120 (479)
.|..+|.++|+ .|.+||..|.--+ ...+|..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777774 7999999983222 45889999887765
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=32.31 E-value=43 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCCC----hhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGRT----DNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGRT----dnqcKNRW~slLkK 120 (479)
.|..+|.+.|+ .|.+||..|.--. ...+|.+|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777778884 7999999983222 46789999887765
No 109
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=31.67 E-value=38 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=18.4
Q ss_pred CCCCCCCCHHHHHHHH--------HHHHHhC
Q 044977 18 ERHIVTWTQQEDDILR--------EQISIHG 40 (479)
Q Consensus 18 krkrg~WT~EEDekL~--------elV~k~G 40 (479)
...+|-||+|+|+.|. .++++||
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 4568899999999984 5677777
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=29.39 E-value=33 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|..+|.+.|+ .|.+||..|.--....+|..|..+|-+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 36666666663 699999998444489999999888765
No 111
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.14 E-value=80 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 73 KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 73 Kg~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|++|...+++|
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3468888777665444 788899999999 89999999999988776
No 112
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.85 E-value=52 Score=29.14 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=28.2
Q ss_pred hhhHhhhcCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHH
Q 044977 44 WSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCE 86 (479)
Q Consensus 44 Ws~IAk~lpgRT~kQCReRW~n~L~P~IkKg~WT~EEDelLLe 86 (479)
-..||..+.|+++.+||..+. + ...+|+||++.|.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467999999999999999862 2 23599999987654
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.23 E-value=58 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC--------chhhhchhcCCC-C---hhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVVSGR-T---DNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~LPGR-T---dnqcKNRW~slLkK 120 (479)
.|..+|.++|+ .|.+|+..|.-- + ...+|.+|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777774 799999998322 1 35788888877754
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.76 E-value=64 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
+|+.|-+. +.++ ..|-...+||..+ |-+...|+.|....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555444 4445 5677899999999 88999999988877665
No 115
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.06 E-value=70 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred hCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 91 FGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 91 ~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|-...+||..+ |-+...|++|....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466789999999 89999999998776654
No 116
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.39 E-value=63 Score=25.25 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHHHHHHHHH----hCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 80 EDMLLCEAQKI----FGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 80 EDelLLelvkk----~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.+..++.+..- .|-.+.+||..+ |-|...|+.+....+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555543 467899999999 89999999988776655
No 117
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=25.96 E-value=44 Score=28.49 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC-------CChhhHhhhcCCCC----hhhhhhhhhhccCC
Q 044977 30 DILREQISIHGT-------ENWSIIASKFKDKT----TRQCRRRWYTYLNS 69 (479)
Q Consensus 30 ekL~elV~k~G~-------~nWs~IAk~lpgRT----~kQCReRW~n~L~P 69 (479)
-+|..+|.+.|. +.|..||..|+.-. +...|..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777777762 26999999997432 45678888877754
No 118
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.74 E-value=77 Score=25.30 Aligned_cols=43 Identities=30% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 75 GWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.|...++++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466766665554 5 7788899999999 89999999998877765
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=25.26 E-value=1e+02 Score=22.44 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 74 GGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 74 g~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..+|+.|-+.|.- + ..|-...+||..+ |-+...|+.|...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766554 4 5677899999999 88999999998877655
No 120
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.83 E-value=40 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHhC--------CchhhhchhcCC-C---ChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFG--------NRWTEIAKVVSG-R---TDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~G--------nrWskIAk~LPG-R---TdnqcKNRW~slLkK 120 (479)
.|..+|.+.| +.|.+|+..|.- . ....+|.+|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3667777776 479999999832 1 145788888766543
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=24.66 E-value=79 Score=27.20 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhhchhc--CCC---ChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFGN--------RWTEIAKVV--SGR---TDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~Gn--------rWskIAk~L--PGR---TdnqcKNRW~slLkK 120 (479)
.|..+|.++|+ .|.+||..| +.. ....+|.+|..+|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677788884 799999998 222 146889999887765
No 122
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=24.65 E-value=55 Score=27.23 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CchhhhchhcCC--C---ChhHHHHHHHHHhhh
Q 044977 83 LLCEAQKIFG--------NRWTEIAKVVSG--R---TDNAVKNRFSTLCKK 120 (479)
Q Consensus 83 lLLelvkk~G--------nrWskIAk~LPG--R---TdnqcKNRW~slLkK 120 (479)
.|..+|.++| +.|.+||..|.. . ....+|..|..+|..
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3666677777 479999999832 1 246899999888765
No 123
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=23.68 E-value=30 Score=38.75 Aligned_cols=58 Identities=24% Similarity=0.537 Sum_probs=41.5
Q ss_pred cccCCChhHHHHH-HHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHhcccCcCcccccCcCc
Q 044977 244 FLKKDDPKITALI-QQAELLSSLAQKVNTESTEQSLENAWKVLQDFLNRSKENDILRCKISD 304 (479)
Q Consensus 244 ~l~~~~pk~~~~~-qq~~ll~sla~k~~~~~~~qs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (479)
++|+-.-+...++ ++||.|++||......--...|+.|||.| .+++--|. |.++.|..
T Consensus 325 ~~K~~nR~~E~~L~~~aE~l~~la~~~g~~yp~~~L~~~Wk~l--l~~Q~HD~-i~Gts~~~ 383 (923)
T 2wyh_A 325 YLKQANTRVSRQLENITEPLAAMAYEVTSTYPHDQLRYAWKTL--MQNHPHDS-ICGCSVDS 383 (923)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHSCCCHHHHHHHHHHH--HTTCBHHH-HTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH--hccCCCcC-cCCcCCHH
Confidence 4677777888889 69999999997664434456799999976 34544343 66777654
No 124
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.35 E-value=78 Score=24.56 Aligned_cols=43 Identities=26% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 75 GWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 75 ~WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.+|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.|...++++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777655544 4 5788899999999 89999999998877665
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.74 E-value=87 Score=25.61 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.9
Q ss_pred HhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 90 IFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 90 k~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..|-...+||..+ |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567799999999 89999999998776654
No 126
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.39 E-value=86 Score=24.54 Aligned_cols=42 Identities=26% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 76 WSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 76 WT~EEDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.|...++++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 566666555 444 6788899999999 89999999998877765
No 127
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.11 E-value=1.1e+02 Score=21.57 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 82 MLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 82 elLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
..++.+ ...|-.-.+||..+ |-+...|+.|...+.++
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 345555 35687889999999 89999999999887765
No 128
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.35 E-value=57 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CChhhHhhhcCCCC----hhhhhhhhhhccCC
Q 044977 31 ILREQISIHGT-------ENWSIIASKFKDKT----TRQCRRRWYTYLNS 69 (479)
Q Consensus 31 kL~elV~k~G~-------~nWs~IAk~lpgRT----~kQCReRW~n~L~P 69 (479)
+|..+|.++|. ..|..||..|+.-. +..++..|.+||.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777652 26999999997432 45677777777753
No 129
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.31 E-value=2.5e+02 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=20.9
Q ss_pred hhhhhhhhccC-CCCCCCCCCHHHHHHHH
Q 044977 58 QCRRRWYTYLN-SDFKKGGWSPEEDMLLC 85 (479)
Q Consensus 58 QCReRW~n~L~-P~IkKg~WT~EEDelLL 85 (479)
.+-+.|..-.. |.-..|-||.++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 55666665444 55678999999999887
No 130
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.52 E-value=95 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCchhhhchhcCCCChhHHHHHHHHHhhh
Q 044977 80 EDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKK 120 (479)
Q Consensus 80 EDelLLelvkk~GnrWskIAk~LPGRTdnqcKNRW~slLkK 120 (479)
.+..++.++...|-...+||..+ |-|...|+.|....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788999999999 89999999988776554
No 131
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.05 E-value=57 Score=27.02 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCC-------CChhhHhhhcCCCC----hhhhhhhhhhccCC
Q 044977 30 DILREQISIHGT-------ENWSIIASKFKDKT----TRQCRRRWYTYLNS 69 (479)
Q Consensus 30 ekL~elV~k~G~-------~nWs~IAk~lpgRT----~kQCReRW~n~L~P 69 (479)
-.|...|.+.|. +.|..||..|+.-. +.+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 356777777762 26999999997432 45667777776643
Done!