Query 044978
Match_columns 142
No_of_seqs 119 out of 671
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 5.6E-38 1.2E-42 228.8 10.1 99 1-102 1-100 (100)
2 PLN03090 auxin-responsive fami 100.0 4.2E-36 9E-41 221.0 10.2 91 4-101 12-103 (104)
3 PLN03220 uncharacterized prote 100.0 1.3E-31 2.7E-36 197.3 9.6 86 5-99 10-101 (105)
4 PLN03219 uncharacterized prote 100.0 1.3E-31 2.7E-36 198.1 9.2 89 11-100 12-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 85.9 0.39 8.5E-06 33.1 1.1 55 50-104 6-63 (94)
6 PRK02899 adaptor protein; Prov 82.6 1.1 2.4E-05 36.1 2.5 25 63-87 38-62 (197)
7 PRK02315 adaptor protein; Prov 77.2 1.9 4E-05 35.5 2.3 25 63-87 38-62 (233)
8 PF05389 MecA: Negative regula 71.2 1.3 2.8E-05 35.6 0.0 25 63-87 38-62 (220)
9 smart00666 PB1 PB1 domain. Pho 70.1 7 0.00015 26.0 3.4 52 47-103 8-70 (81)
10 cd05992 PB1 The PB1 domain is 68.1 11 0.00023 24.9 3.9 53 47-103 7-70 (81)
11 PF00651 BTB: BTB/POZ domain; 64.0 23 0.0005 23.9 5.1 57 44-104 13-74 (111)
12 cd06407 PB1_NLP A PB1 domain i 50.6 27 0.00059 24.3 3.7 49 45-97 5-65 (82)
13 PF11822 DUF3342: Domain of un 46.4 28 0.00061 30.5 3.8 52 51-105 13-69 (317)
14 PF08948 DUF1859: Domain of un 44.5 10 0.00022 28.7 0.8 30 38-67 84-123 (126)
15 cd06397 PB1_UP1 Uncharacterize 43.1 50 0.0011 23.7 4.0 47 47-97 7-64 (82)
16 PF14317 YcxB: YcxB-like prote 42.8 49 0.0011 20.0 3.6 34 38-71 26-59 (62)
17 PF07429 Glyco_transf_56: 4-al 40.0 56 0.0012 29.2 4.8 64 38-104 180-266 (360)
18 PF02209 VHP: Villin headpiece 39.9 16 0.00034 22.2 1.0 19 60-78 1-19 (36)
19 smart00153 VHP Villin headpiec 39.6 19 0.00041 21.8 1.3 19 60-78 1-19 (36)
20 cd06396 PB1_NBR1 The PB1 domai 39.2 1.1E+02 0.0025 21.6 5.4 56 45-103 5-69 (81)
21 TIGR02527 dot_icm_IcmQ Dot/Icm 35.8 24 0.00051 28.7 1.6 55 11-65 78-146 (182)
22 PF00564 PB1: PB1 domain; Int 32.1 43 0.00094 22.0 2.3 48 49-101 10-69 (84)
23 PRK02797 4-alpha-L-fucosyltran 31.4 1.1E+02 0.0024 26.9 5.2 65 38-105 141-228 (322)
24 cd06401 PB1_TFG The PB1 domain 31.0 84 0.0018 22.4 3.6 43 45-90 5-61 (81)
25 cd06398 PB1_Joka2 The PB1 doma 30.6 83 0.0018 22.4 3.6 53 47-99 7-72 (91)
26 COG3769 Predicted hydrolase (H 28.8 79 0.0017 27.2 3.7 73 3-80 46-120 (274)
27 PF11834 DUF3354: Domain of un 28.7 40 0.00087 23.1 1.6 17 64-80 26-42 (69)
28 cd04751 Commd3 COMM_Domain con 28.5 60 0.0013 23.1 2.6 29 82-111 64-92 (95)
29 COG1759 5-formaminoimidazole-4 28.1 29 0.00062 31.0 1.0 78 36-115 87-199 (361)
30 PF04332 DUF475: Protein of un 28.1 37 0.00081 29.5 1.7 15 2-16 6-20 (294)
31 COG4862 MecA Negative regulato 27.3 47 0.001 27.9 2.1 27 62-88 37-63 (224)
32 PF12058 DUF3539: Protein of u 26.0 10 0.00022 27.5 -1.7 13 59-71 4-16 (88)
33 PF05194 UreE_C: UreE urease a 25.5 96 0.0021 21.4 3.1 29 40-73 23-51 (87)
34 COG2899 Uncharacterized protei 25.3 36 0.00077 30.0 1.1 16 2-17 56-71 (346)
35 cd04395 RhoGAP_ARHGAP21 RhoGAP 24.9 1.4E+02 0.0031 23.2 4.4 43 64-106 19-61 (196)
36 PF09475 Dot_icm_IcmQ: Dot/Icm 24.5 25 0.00054 28.5 0.0 56 11-66 78-147 (179)
37 KOG1290 Serine/threonine prote 24.3 44 0.00096 31.5 1.6 19 39-57 62-83 (590)
38 PRK10308 3-methyl-adenine DNA 23.0 2.9E+02 0.0063 23.3 6.1 61 41-101 45-121 (283)
39 PF12926 MOZART2: Mitotic-spin 22.4 1.4E+02 0.0031 21.6 3.6 34 87-120 39-72 (88)
40 cd04404 RhoGAP-p50rhoGAP RhoGA 22.2 1.3E+02 0.0028 23.4 3.6 43 64-107 24-67 (195)
41 PF14974 DUF4511: Domain of un 21.2 2.3E+02 0.005 21.1 4.5 42 64-111 47-88 (105)
42 cd01406 SIR2-like Sir2-like: P 20.2 1.7E+02 0.0038 23.2 4.1 56 42-104 1-58 (242)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=5.6e-38 Score=228.75 Aligned_cols=99 Identities=37% Similarity=0.663 Sum_probs=88.9
Q ss_pred CCChHHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-ceeEEEeccCcCcHHHHHHHHhhhhhcCC
Q 044978 1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-EKRFSVPLECLSNNVVIELLRMSEEEFGL 79 (142)
Q Consensus 1 mi~~~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-~~RfvVp~~yL~hp~F~eLL~~aeeEfG~ 79 (142)
||+.+|....++||++.++..+++.+..+... ..++|+||||||||+ ++||+||++|||||+|++||++|+|||||
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~---~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~ 77 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSS---ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGF 77 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccc---cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCc
Confidence 99999999999999998877666554433321 368999999999998 89999999999999999999999999999
Q ss_pred CCCCCeeecCcHHHHHHHHHHHh
Q 044978 80 PSNGPITLPCDSTFLSYVMSLVQ 102 (142)
Q Consensus 80 ~~~G~L~iPC~~~~Fe~vl~~l~ 102 (142)
+++|+|+||||+++||+++|+|+
T Consensus 78 ~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 78 DQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred CCCCcEEeeCCHHHHHHHHHHhC
Confidence 99999999999999999999985
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=220.98 Aligned_cols=91 Identities=25% Similarity=0.490 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-ceeEEEeccCcCcHHHHHHHHhhhhhcCCCCC
Q 044978 4 SKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-EKRFSVPLECLSNNVVIELLRMSEEEFGLPSN 82 (142)
Q Consensus 4 ~~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~ 82 (142)
.++|++|+|||.+++..+.. ..+..+.++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus 12 ~~~~kq~l~r~~s~~~~~~~-------~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~ 84 (104)
T PLN03090 12 TAMLKQILKRCSSLGKKQGY-------DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD 84 (104)
T ss_pred HHHHHHHHHHHHHhcccCCc-------ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 57899999999987543211 01123678999999999997 58999999999999999999999999999999
Q ss_pred CCeeecCcHHHHHHHHHHH
Q 044978 83 GPITLPCDSTFLSYVMSLV 101 (142)
Q Consensus 83 G~L~iPC~~~~Fe~vl~~l 101 (142)
|+|+||||+++|++++|+|
T Consensus 85 G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 85 MGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CcEEEeCCHHHHHHHHHHh
Confidence 9999999999999999998
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=197.29 Aligned_cols=86 Identities=33% Similarity=0.539 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-----ceeEEEeccCcCcHHHHHHHHhhhhhcCC
Q 044978 5 KRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-----EKRFSVPLECLSNNVVIELLRMSEEEFGL 79 (142)
Q Consensus 5 ~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-----~~RfvVp~~yL~hp~F~eLL~~aeeEfG~ 79 (142)
.+++|+.|+-. ++. +.+.+ ...+.+|||||||||||+ ++||+||++|||||+|++||++|||||||
T Consensus 10 ~~~k~~~~~~~-~~~--~~~~~------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 10 NATKQILKLNS-LAN--RNRTS------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred HHHHHHHHHHh-hcc--ccccc------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 45677777655 321 11111 112568999999999996 69999999999999999999999999999
Q ss_pred CC-CCCeeecCcHHHHHHHHH
Q 044978 80 PS-NGPITLPCDSTFLSYVMS 99 (142)
Q Consensus 80 ~~-~G~L~iPC~~~~Fe~vl~ 99 (142)
++ +|+|+||||++.|++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHH
Confidence 98 699999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=198.14 Aligned_cols=89 Identities=28% Similarity=0.497 Sum_probs=72.7
Q ss_pred HHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC---ceeEEEeccCcCcHHHHHHHHhhhhhcCCCC-CCCee
Q 044978 11 ARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD---EKRFSVPLECLSNNVVIELLRMSEEEFGLPS-NGPIT 86 (142)
Q Consensus 11 ~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~---~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~-~G~L~ 86 (142)
.+-|+..+-.+++-.+.+..+ .+.+.++||||+|||||+ ++||+||++|||||+|++||++|||||||++ +|+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~ 90 (108)
T PLN03219 12 KQIFKSQSMRNKNGSSSPSSS-TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLT 90 (108)
T ss_pred HHHHHHHHHhcccCCCCCccC-CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEE
Confidence 356776554455444333222 233678999999999996 7999999999999999999999999999997 69999
Q ss_pred ecCcHHHHHHHHHH
Q 044978 87 LPCDSTFLSYVMSL 100 (142)
Q Consensus 87 iPC~~~~Fe~vl~~ 100 (142)
|||+++.|++++..
T Consensus 91 IPCd~~~F~~ll~~ 104 (108)
T PLN03219 91 IPCREESFLHLITS 104 (108)
T ss_pred EeCCHHHHHHHHHh
Confidence 99999999999964
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=85.87 E-value=0.39 Score=33.05 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=41.0
Q ss_pred CceeEEEeccCcC-c--HHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhcc
Q 044978 50 DEKRFSVPLECLS-N--NVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRC 104 (142)
Q Consensus 50 ~~~RfvVp~~yL~-h--p~F~eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~ 104 (142)
.+++|.++.+.|. + ..|..++........-+.+|.+-|-++...|++||..++.+
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 3678888887776 4 47888888652222224579999999999999999999984
No 6
>PRK02899 adaptor protein; Provisional
Probab=82.59 E-value=1.1 Score=36.12 Aligned_cols=25 Identities=20% Similarity=0.667 Sum_probs=21.4
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCeee
Q 044978 63 NNVVIELLRMSEEEFGLPSNGPITL 87 (142)
Q Consensus 63 hp~F~eLL~~aeeEfG~~~~G~L~i 87 (142)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 4567788999999999999999963
No 7
>PRK02315 adaptor protein; Provisional
Probab=77.21 E-value=1.9 Score=35.53 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCeee
Q 044978 63 NNVVIELLRMSEEEFGLPSNGPITL 87 (142)
Q Consensus 63 hp~F~eLL~~aeeEfG~~~~G~L~i 87 (142)
+-+|.++|+++..|+||..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4589999999999999999999964
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.25 E-value=1.3 Score=35.56 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCeee
Q 044978 63 NNVVIELLRMSEEEFGLPSNGPITL 87 (142)
Q Consensus 63 hp~F~eLL~~aeeEfG~~~~G~L~i 87 (142)
+-.|.++|+++.+|+||..+|||++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 5689999999999999999999975
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=70.14 E-value=7 Score=25.97 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=36.7
Q ss_pred EecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC----------CCC-CeeecCcHHHHHHHHHHHhc
Q 044978 47 YTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP----------SNG-PITLPCDSTFLSYVMSLVQR 103 (142)
Q Consensus 47 yVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G-~L~iPC~~~~Fe~vl~~l~~ 103 (142)
|.|+.+||.||- ...|.+|..+..+.|+.. .+| .++|.++. .++.++.+.+.
T Consensus 8 ~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 8 YGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred ECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 445679999985 777999999999988774 244 56788865 45555555543
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=68.11 E-value=11 Score=24.87 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=37.9
Q ss_pred EecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC----------CCCC-eeecCcHHHHHHHHHHHhc
Q 044978 47 YTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP----------SNGP-ITLPCDSTFLSYVMSLVQR 103 (142)
Q Consensus 47 yVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G~-L~iPC~~~~Fe~vl~~l~~ 103 (142)
|-|+-+||.+|. .++.|.+|..+..+.|++. .+|- ++|.++ +.|+..+...++
T Consensus 7 ~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 7 YGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred ecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 446789999997 8888999999999888874 2444 456665 456666665543
No 11
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=63.98 E-value=23 Score=23.89 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=41.3
Q ss_pred EEEEecCceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCC--Ceeec-CcHHHHHHHHHHHhcc
Q 044978 44 FVVYTTDEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNG--PITLP-CDSTFLSYVMSLVQRC 104 (142)
Q Consensus 44 ~~VyVG~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G--~L~iP-C~~~~Fe~vl~~l~~~ 104 (142)
+.+.||++++|-+.-..| ..|.|+.+++.. +....+ .+.++ ++...|+.++..+-.+
T Consensus 13 ~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 13 VTIRVGDGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEEECCCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCC
Confidence 345566688999988877 469999999987 222233 45555 8899999999998755
No 12
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=50.63 E-value=27 Score=24.35 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=34.1
Q ss_pred EEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCCC------------CCCeeecCcHHHHHHH
Q 044978 45 VVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPS------------NGPITLPCDSTFLSYV 97 (142)
Q Consensus 45 ~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~------------~G~L~iPC~~~~Fe~v 97 (142)
+.|-||-.||-+|..- -|++|.++-.+-|++.. +..++|.|+.++=|.+
T Consensus 5 ~~~~~d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 5 ATYGEEKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred EEeCCeEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 4555678999988643 58888888888776532 3456788988765544
No 13
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=46.37 E-value=28 Score=30.50 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=40.7
Q ss_pred ceeEEEeccCcC--cHHHHHHHHh---hhhhcCCCCCCCeeecCcHHHHHHHHHHHhccC
Q 044978 51 EKRFSVPLECLS--NNVVIELLRM---SEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 51 ~~RfvVp~~yL~--hp~F~eLL~~---aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
.+=|..|.+.|- ...|++.|.. ..++. .+=.|.+-||+..|+.++..+++..
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~~ 69 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGEP 69 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcCC
Confidence 577999998884 5789999976 33332 2466889999999999999998844
No 14
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=44.54 E-value=10 Score=28.75 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=8.9
Q ss_pred CCCCCeEEEEecCceeEE----------EeccCcCcHHHH
Q 044978 38 IANKGHFVVYTTDEKRFS----------VPLECLSNNVVI 67 (142)
Q Consensus 38 ~vpkG~~~VyVG~~~Rfv----------Vp~~yL~hp~F~ 67 (142)
.-..|++|+.|-.+-.|+ +|+-|||.|+-+
T Consensus 84 AG~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 84 AGKQGYFPLLVPGRAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp ----SS--EEE--SSSSEEEEEEEESS----S--------
T ss_pred CCCcccceeeccchhhhhhhhccCCCcceeeEEEeceeee
Confidence 346799999997766665 688888888643
No 15
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=43.13 E-value=50 Score=23.73 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=35.4
Q ss_pred EecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC----------CC-CCeeecCcHHHHHHH
Q 044978 47 YTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP----------SN-GPITLPCDSTFLSYV 97 (142)
Q Consensus 47 yVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~-G~L~iPC~~~~Fe~v 97 (142)
|-|+-|||..|. .|.+.+|-++.+.=|-+. .| ..|||.=+.++.+..
T Consensus 7 ~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~ 64 (82)
T cd06397 7 FLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFY 64 (82)
T ss_pred eCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHH
Confidence 457789999998 899999999998877665 34 457887766665544
No 16
>PF14317 YcxB: YcxB-like protein
Probab=42.82 E-value=49 Score=19.96 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=26.5
Q ss_pred CCCCCeEEEEecCceeEEEeccCcCcHHHHHHHH
Q 044978 38 IANKGHFVVYTTDEKRFSVPLECLSNNVVIELLR 71 (142)
Q Consensus 38 ~vpkG~~~VyVG~~~RfvVp~~yL~hp~F~eLL~ 71 (142)
..-+.++-+|+++..-++||-+.++.--..++.+
T Consensus 26 ~e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 26 VETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred EEeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHH
Confidence 3456889999999999999999998555555544
No 17
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=40.04 E-value=56 Score=29.19 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=44.2
Q ss_pred CCCCCeEEEEec---------------------CceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeeecCcHHHH
Q 044978 38 IANKGHFVVYTT---------------------DEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITLPCDSTFL 94 (142)
Q Consensus 38 ~vpkG~~~VyVG---------------------~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~iPC~~~~F 94 (142)
..++|-..+.|| +..|++||+.|= |.-...++.+.+++-|| ++-+.+-=+---|
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~---~~~~~iL~e~mpf 256 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG---AENFQILTEFMPF 256 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC---ccceeEhhhhCCH
Confidence 345677888886 248999999996 45688888888888888 3444444445556
Q ss_pred HHHHHHHhcc
Q 044978 95 SYVMSLVQRC 104 (142)
Q Consensus 95 e~vl~~l~~~ 104 (142)
+..+.+|++-
T Consensus 257 ~eYl~lL~~c 266 (360)
T PF07429_consen 257 DEYLALLSRC 266 (360)
T ss_pred HHHHHHHHhC
Confidence 6666666654
No 18
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=39.89 E-value=16 Score=22.21 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.2
Q ss_pred CcCcHHHHHHHHhhhhhcC
Q 044978 60 CLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 60 yL~hp~F~eLL~~aeeEfG 78 (142)
||+.--|.+++.|+.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999974
No 19
>smart00153 VHP Villin headpiece domain.
Probab=39.65 E-value=19 Score=21.77 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.0
Q ss_pred CcCcHHHHHHHHhhhhhcC
Q 044978 60 CLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 60 yL~hp~F~eLL~~aeeEfG 78 (142)
||+.--|++++.|+.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999973
No 20
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.23 E-value=1.1e+02 Score=21.56 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred EEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC---------CCCCeeecCcHHHHHHHHHHHhc
Q 044978 45 VVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP---------SNGPITLPCDSTFLSYVMSLVQR 103 (142)
Q Consensus 45 ~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~---------~~G~L~iPC~~~~Fe~vl~~l~~ 103 (142)
+-|-||..||.++- -.++-|.+|..+-+.-|+++ .+.+++|.|++++=|.+ .+.++
T Consensus 5 aty~~d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE~~-rl~~~ 69 (81)
T cd06396 5 VTYNGESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEEAL-KSAVR 69 (81)
T ss_pred EEECCeEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHHHH-HHHHh
Confidence 44667889999984 22556999999999888853 35678999988765544 34443
No 21
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=35.77 E-value=24 Score=28.73 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=34.6
Q ss_pred HHHHhh-hhhcccCccccccccccc--------CCcCCCCCeEEEEecCceeEE-----EeccCcCcHH
Q 044978 11 ARKWQK-MAAMKRMRISFPRSAAEQ--------NSSIANKGHFVVYTTDEKRFS-----VPLECLSNNV 65 (142)
Q Consensus 11 ~kKWqk-~a~~~r~r~S~~~~~~~~--------~~~~vpkG~~~VyVG~~~Rfv-----Vp~~yL~hp~ 65 (142)
++.|++ +|++.|..+|-|==.++. +...+.+.|++|||-...=+- +|++=|+.|+
T Consensus 78 lqsWerilanLprqmisRPIYanE~dvk~~IksKenk~NEAYVaiyI~q~dIl~~~~dk~p~Dk~GkpL 146 (182)
T TIGR02527 78 LKQWAKILASLERQMIGRPIYADEADAKAAIKQKENKLNEACVAIAIDQSDIIHLSADKAPKDKLGKLL 146 (182)
T ss_pred HHHHHHHHHhChhhhhCCCCcCCHHHHHHHHHhhhccccceEEEEEEchHhcccCCcccCcccccCCcc
Confidence 578998 667888777754222222 256799999999997422222 4555555554
No 22
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.08 E-value=43 Score=22.01 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=30.8
Q ss_pred cCcee-EEEeccCcCcHHHHHHHHhhhhhcCCC----------CCCC-eeecCcHHHHHHHHHHH
Q 044978 49 TDEKR-FSVPLECLSNNVVIELLRMSEEEFGLP----------SNGP-ITLPCDSTFLSYVMSLV 101 (142)
Q Consensus 49 G~~~R-fvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G~-L~iPC~~~~Fe~vl~~l 101 (142)
|+.+| +.+| ..+.|.+|..+.++.||.. .+|- ++|.++.++ +..+...
T Consensus 10 ~~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl-~~a~~~~ 69 (84)
T PF00564_consen 10 GDIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDL-QEAIEQA 69 (84)
T ss_dssp TEEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHH-HHHHHHH
T ss_pred CeeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHH-HHHHHHH
Confidence 44555 4444 5679999999999999883 3554 567766554 3333333
No 23
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=31.38 E-value=1.1e+02 Score=26.92 Aligned_cols=65 Identities=12% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCCCCeEEEEecC---------------------ceeEEEeccC--cCcHHHHHHHHhhhhhcCCCCCCCeeecCcHHHH
Q 044978 38 IANKGHFVVYTTD---------------------EKRFSVPLEC--LSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFL 94 (142)
Q Consensus 38 ~vpkG~~~VyVG~---------------------~~RfvVp~~y--L~hp~F~eLL~~aeeEfG~~~~G~L~iPC~~~~F 94 (142)
..+++.+.+.||. .-|+.||+.| =|.-..++..+.+.+-|| .+-+++-=+---|
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~---~~~~~~L~e~l~f 217 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG---AENFQILTEKLPF 217 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC---cccEEehhhhCCH
Confidence 3466789999872 2599999999 565566666666666777 3455555555567
Q ss_pred HHHHHHHhccC
Q 044978 95 SYVMSLVQRCM 105 (142)
Q Consensus 95 e~vl~~l~~~~ 105 (142)
+..+.+|.+-+
T Consensus 218 ~eYl~lL~~~D 228 (322)
T PRK02797 218 DDYLALLRQCD 228 (322)
T ss_pred HHHHHHHHhCC
Confidence 77777766543
No 24
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=30.99 E-value=84 Score=22.41 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=27.9
Q ss_pred EEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCC-------------CCCCCe-eecCc
Q 044978 45 VVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGL-------------PSNGPI-TLPCD 90 (142)
Q Consensus 45 ~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~-------------~~~G~L-~iPC~ 90 (142)
+||-||-||+-+|.+ .=.|.+|.++....|.. +.||-+ ||.++
T Consensus 5 ~~~g~DiR~~~~~~~---~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~ 61 (81)
T cd06401 5 AQLGDDIRRIPIHNE---DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDS 61 (81)
T ss_pred EEeCCeEEEEeccCc---cccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccH
Confidence 456667788766642 22678888888766652 245665 78776
No 25
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=30.59 E-value=83 Score=22.39 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=35.1
Q ss_pred EecCceeEEEecc-CcCcHHHHHHHHhhhhhcCCCC-----------CCC-eeecCcHHHHHHHHH
Q 044978 47 YTTDEKRFSVPLE-CLSNNVVIELLRMSEEEFGLPS-----------NGP-ITLPCDSTFLSYVMS 99 (142)
Q Consensus 47 yVG~~~RfvVp~~-yL~hp~F~eLL~~aeeEfG~~~-----------~G~-L~iPC~~~~Fe~vl~ 99 (142)
|-|+-+||-+|.. --.+.-|..|.++-++-|.... +|- ++|.||.++-+.+-.
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3356899999974 0114478888888887765542 444 578888877665543
No 26
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.83 E-value=79 Score=27.16 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecCceeEEEeccCcC--cHHHHHHHHhhhhhcCCC
Q 044978 3 NSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLECLS--NNVVIELLRMSEEEFGLP 80 (142)
Q Consensus 3 ~~~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~~~RfvVp~~yL~--hp~F~eLL~~aeeEfG~~ 80 (142)
|||-..+|..-|.++..-++ |....++...-.|+|++|.=++-+.--=+-.--|+ -..++++|+..||-|||.
T Consensus 46 SSKT~aE~~~l~~~l~v~~~-----p~iaEnG~aI~~p~~~~~~~~~~r~~~g~~~~elg~~l~~ire~l~kLee~~g~~ 120 (274)
T COG3769 46 SSKTRAEMLYLQKSLGVQGL-----PLIAENGAAIYLPKGWFPFDGKPREISGISHIELGKVLEKIREKLDKLEEHFGFT 120 (274)
T ss_pred ccchHHHHHHHHHhcCCCCC-----ceeecCCceEEecccccccCCCCceecceEeeehhhhHHHHHHHHHHHHHHhCee
Confidence 67778899999998775542 22223333455788988877653211111111122 245899999999999985
No 27
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=28.71 E-value=40 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhcCCC
Q 044978 64 NVVIELLRMSEEEFGLP 80 (142)
Q Consensus 64 p~F~eLL~~aeeEfG~~ 80 (142)
-.++|||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 47999999999999985
No 28
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=28.50 E-value=60 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCeeecCcHHHHHHHHHHHhccCchHHHH
Q 044978 82 NGPITLPCDSTFLSYVMSLVQRCMPDDLEK 111 (142)
Q Consensus 82 ~G~L~iPC~~~~Fe~vl~~l~~~~~~~~e~ 111 (142)
..++.+-|+++.|.+++.-|+. +.+.+|+
T Consensus 64 ~~~i~f~c~~e~L~~Li~~Lk~-A~~~~e~ 92 (95)
T cd04751 64 KPDINFTCTLEQLQDLVNKLKD-AAKNIER 92 (95)
T ss_pred cceEEEEeCHHHHHHHHHHHHH-HHHHHHH
Confidence 4589999999999999998853 3355665
No 29
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=28.14 E-value=29 Score=30.97 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=46.0
Q ss_pred CcCCCCCeEEEEec-C--ceeEEEeccCcCc----------HHHHHHHHhhhh----hcCC--CCCCCe-----------
Q 044978 36 SSIANKGHFVVYTT-D--EKRFSVPLECLSN----------NVVIELLRMSEE----EFGL--PSNGPI----------- 85 (142)
Q Consensus 36 ~~~vpkG~~~VyVG-~--~~RfvVp~~yL~h----------p~F~eLL~~aee----EfG~--~~~G~L----------- 85 (142)
..-+|.|-|++||| | ...|.||+ +++ -.-..||++|.= .|.= +.||++
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~--fGnR~lLrwE~~~~~~~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggR 164 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPM--FGNRELLRWEEDRKLEYKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGR 164 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcc--cccHhHhhhhcchhhHHHHHHHcCCCCCcccCChHHcCCceEEecCCccCCc
Confidence 45699999999999 4 36677773 333 233578887752 2221 023433
Q ss_pred --eecCcHHHHH-HHHHHHhccCc--hHHHHHHhh
Q 044978 86 --TLPCDSTFLS-YVMSLVQRCMP--DDLEKALLT 115 (142)
Q Consensus 86 --~iPC~~~~Fe-~vl~~l~~~~~--~~~e~~~l~ 115 (142)
-+.=+.+.|. .+-.+++++.- +|+++|.+-
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~Ie 199 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIE 199 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceee
Confidence 3445555555 45567776644 777776543
No 30
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=28.07 E-value=37 Score=29.51 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHHhh
Q 044978 2 INSKRLIQLARKWQK 16 (142)
Q Consensus 2 i~~~kL~~~~kKWqk 16 (142)
+|++.|++|..+||+
T Consensus 6 VNA~vLk~Ms~~Wq~ 20 (294)
T PF04332_consen 6 VNATVLKRMSPFWQR 20 (294)
T ss_pred hhHHHHHhhhHHHHH
Confidence 689999999999998
No 31
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=27.32 E-value=47 Score=27.87 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhhhhhcCCCCCCCeeec
Q 044978 62 SNNVVIELLRMSEEEFGLPSNGPITLP 88 (142)
Q Consensus 62 ~hp~F~eLL~~aeeEfG~~~~G~L~iP 88 (142)
.|-+|-++++.+..|-+|..+|||.|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccCCceEEE
Confidence 478999999999999999999999863
No 32
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=25.96 E-value=10 Score=27.51 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=8.9
Q ss_pred cCcCcHHHHHHHH
Q 044978 59 ECLSNNVVIELLR 71 (142)
Q Consensus 59 ~yL~hp~F~eLL~ 71 (142)
.|||||.|.-|-.
T Consensus 4 ~YLNHPtFGlLy~ 16 (88)
T PF12058_consen 4 TYLNHPTFGLLYR 16 (88)
T ss_dssp -EEEETTTEEEEE
T ss_pred ccccCCccchhee
Confidence 5888988876543
No 33
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=25.54 E-value=96 Score=21.36 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=18.8
Q ss_pred CCCeEEEEecCceeEEEeccCcCcHHHHHHHHhh
Q 044978 40 NKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMS 73 (142)
Q Consensus 40 pkG~~~VyVG~~~RfvVp~~yL~hp~F~eLL~~a 73 (142)
.+=|+|+++++. ++.|| ..+.+.+||++.
T Consensus 23 GNrH~p~~i~~~-~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 23 GNRHWPLFIEED-ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HHTT--EEEETT-EEEEE------HHHHHHHHHT
T ss_pred cCCccceEEcCC-EEEec----CcHHHHHHHHHC
Confidence 346889999877 77777 677778888774
No 34
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=36 Score=30.02 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHhhh
Q 044978 2 INSKRLIQLARKWQKM 17 (142)
Q Consensus 2 i~~~kL~~~~kKWqk~ 17 (142)
+|+.+|++|..+|||+
T Consensus 56 vNA~iLk~MS~~Wqk~ 71 (346)
T COG2899 56 VNAAILKDMSPFWQKR 71 (346)
T ss_pred hhHHHHHhccHHHHHH
Confidence 6889999999999984
No 35
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.86 E-value=1.4e+02 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhccCc
Q 044978 64 NVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMP 106 (142)
Q Consensus 64 p~F~eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~~~ 106 (142)
|.|.+..-..-++.|.+.+|--++|.+...-+.+...++++..
T Consensus 19 P~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~ 61 (196)
T cd04395 19 PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGF 61 (196)
T ss_pred ChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCC
Confidence 5555555556678899999999999999999999999998753
No 36
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=24.50 E-value=25 Score=28.55 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHhh-hhhcccCccccccccccc--------CCcCCCCCeEEEEecCceeEE-----EeccCcCcHHH
Q 044978 11 ARKWQK-MAAMKRMRISFPRSAAEQ--------NSSIANKGHFVVYTTDEKRFS-----VPLECLSNNVV 66 (142)
Q Consensus 11 ~kKWqk-~a~~~r~r~S~~~~~~~~--------~~~~vpkG~~~VyVG~~~Rfv-----Vp~~yL~hp~F 66 (142)
++.|++ +|++.|..+|-|==.++. +...+.++|++|||-...=+- +|++=|+.|+.
T Consensus 78 lqsWerilanLprqmisRPIY~nE~dvk~~IksKenk~NEAYVaiyInq~dIl~~~~dk~~~Dk~GkpLl 147 (179)
T PF09475_consen 78 LQSWERILANLPRQMISRPIYANEEDVKAAIKSKENKLNEAYVAIYINQSDILSLSPDKIPTDKLGKPLL 147 (179)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHhCchhhhCCCCcCCHHHHHHHHHhhhcccceeEEEEEEchHhcccCCcccccccccCCccc
Confidence 578998 667888877754222222 156789999999997533332 45555555543
No 37
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.34 E-value=44 Score=31.52 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.8
Q ss_pred CCCCeEEEEecC---ceeEEEe
Q 044978 39 ANKGHFVVYTTD---EKRFSVP 57 (142)
Q Consensus 39 vpkG~~~VyVG~---~~RfvVp 57 (142)
.+-||.||++|| ..||+|-
T Consensus 62 ~kGGYHpV~IGD~F~~gRY~v~ 83 (590)
T KOG1290|consen 62 RKGGYHPVRIGDVFNGGRYHVQ 83 (590)
T ss_pred hcCCCceeeccccccCceEEEE
Confidence 567999999998 4899874
No 38
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=22.96 E-value=2.9e+02 Score=23.27 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCeEEEEec-CceeEEEeccCcCcHHHHHHHHhhhhhcCCCCC---------------CCeeecCcHHHHHHHHHHH
Q 044978 41 KGHFVVYTT-DEKRFSVPLECLSNNVVIELLRMSEEEFGLPSN---------------GPITLPCDSTFLSYVMSLV 101 (142)
Q Consensus 41 kG~~~VyVG-~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~---------------G~L~iPC~~~~Fe~vl~~l 101 (142)
.|.+.|.-. ++.++.|.++.-.-+...+++.+.+.-||++.| .+|+||...+.||-+++.|
T Consensus 45 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcCCCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 355555543 245566666554445566777777777777654 4699999999999999876
No 39
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.36 E-value=1.4e+02 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.0
Q ss_pred ecCcHHHHHHHHHHHhccCchHHHHHHhhhhccC
Q 044978 87 LPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTC 120 (142)
Q Consensus 87 iPC~~~~Fe~vl~~l~~~~~~~~e~~~l~~~~~~ 120 (142)
|+=|.++|+.++.+++-+.+.+.---+|.++.+.
T Consensus 39 v~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred CCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 3458899999999999999999888888887663
No 40
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.23 E-value=1.3e+02 Score=23.37 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHH-HHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhccCch
Q 044978 64 NVVI-ELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPD 107 (142)
Q Consensus 64 p~F~-eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~~~~ 107 (142)
|.+. .+++--+ +.|.+.+|--++|-+....+.+...++++...
T Consensus 24 P~il~~~i~~l~-~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~ 67 (195)
T cd04404 24 PPVVRETVEYLQ-AHALTTEGIFRRSANTQVVKEVQQKYNMGEPV 67 (195)
T ss_pred ChHHHHHHHHHH-HcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC
Confidence 4444 4444444 47999999999999999999999999876533
No 41
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=21.16 E-value=2.3e+02 Score=21.10 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhccCchHHHH
Q 044978 64 NVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEK 111 (142)
Q Consensus 64 p~F~eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~~~~~~e~ 111 (142)
|+..++--..=+.|||..+|. .+..|-+++.-+++++ .|+.+
T Consensus 47 Pva~qiq~~VIk~yGF~~~~e-----G~~~f~~~i~~~e~~D-~eva~ 88 (105)
T PF14974_consen 47 PVATQIQMEVIKKYGFPESRE-----GVMQFAQLIRELEKDD-PEVAR 88 (105)
T ss_pred HHHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHHHHccC-HHHHH
Confidence 444555555556799985332 2467889998887766 45544
No 42
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=20.19 E-value=1.7e+02 Score=23.17 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=35.3
Q ss_pred CeEEEEecCc--eeEEEeccCcCcHHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhcc
Q 044978 42 GHFVVYTTDE--KRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRC 104 (142)
Q Consensus 42 G~~~VyVG~~--~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~ 104 (142)
|++++++|-+ .+ .+-|.+.+|++...+++|...+....-.=+...+..+..++.+.
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 58 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKE 58 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHH
Confidence 6788999864 33 47789999999999999875442111000234455555555544
Done!