Query 044978
Match_columns 142
No_of_seqs 119 out of 671
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 69.8 15 0.00051 25.2 6.3 62 42-105 6-72 (107)
2 2vkp_A BTB/POZ domain-containi 60.7 16 0.00053 23.9 4.8 58 44-105 11-74 (109)
3 1und_A Advillin, P92; actin bi 51.7 5.7 0.00019 23.4 1.2 20 59-78 1-20 (37)
4 2al3_A TUG long isoform; TUG U 51.2 11 0.00038 26.3 2.8 37 43-81 11-47 (90)
5 2vpk_A Myoneurin; transcriptio 47.9 34 0.0012 22.7 4.9 49 50-105 30-83 (116)
6 1vd2_A Protein kinase C, IOTA 43.8 18 0.00061 24.9 2.9 34 49-86 15-48 (89)
7 1w8x_N Protein P31, protein C, 43.0 9.9 0.00034 27.8 1.6 30 38-67 84-123 (126)
8 1r29_A B-cell lymphoma 6 prote 39.8 41 0.0014 22.6 4.3 52 50-105 37-92 (127)
9 3drx_A BTB/POZ domain-containi 35.7 49 0.0017 25.9 4.7 63 41-105 11-78 (202)
10 3ga1_A Nucleus accumbens-assoc 34.0 63 0.0022 21.8 4.6 52 45-104 37-92 (129)
11 2bkf_A Zinc-finger protein NBR 28.8 78 0.0027 21.8 4.2 51 46-98 12-71 (87)
12 1yu8_X Villin; alpha helix, 3- 27.4 22 0.00075 23.4 1.1 20 59-78 31-50 (67)
13 2xko_C PIPX, global nitrogen r 27.0 6.4 0.00022 27.6 -1.6 13 59-71 5-17 (89)
14 3b84_A Zinc finger and BTB dom 26.2 1.2E+02 0.0041 20.1 4.9 49 50-105 32-83 (119)
15 1s1g_A Potassium voltage-gated 26.0 64 0.0022 22.9 3.5 62 41-105 12-75 (124)
16 2if5_A Zinc finger and BTB dom 26.0 1.1E+02 0.0036 20.2 4.5 53 50-105 33-88 (120)
17 1z3x_A Putative cytidyltransfe 25.3 4.3 0.00015 32.9 -3.2 30 36-66 207-236 (238)
18 1qzp_A Dematin; villin headpie 24.3 19 0.00066 23.6 0.4 20 59-78 32-51 (68)
19 1wj6_A KIAA0049 protein, RSGI 24.1 95 0.0032 22.0 4.0 53 45-99 19-80 (101)
20 1ujs_A Actin-binding LIM prote 22.7 26 0.00089 24.3 0.8 20 59-78 46-65 (88)
21 2k6m_S Supervillin; SVHP, HP, 22.7 24 0.00082 23.2 0.6 20 59-78 31-50 (67)
22 3ohu_A Transcription regulator 22.4 74 0.0025 21.2 3.2 53 46-104 37-93 (125)
23 1zav_U 50S ribosomal protein L 20.8 50 0.0017 18.4 1.6 13 66-78 18-30 (30)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=69.80 E-value=15 Score=25.19 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=44.5
Q ss_pred CeEEEEecCceeEEEeccCcC-cH--HHHHHHHhhhhhcC--CCCCCCeeecCcHHHHHHHHHHHhccC
Q 044978 42 GHFVVYTTDEKRFSVPLECLS-NN--VVIELLRMSEEEFG--LPSNGPITLPCDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 42 G~~~VyVG~~~RfvVp~~yL~-hp--~F~eLL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
..+.+-|| ++||.+..+-|. +| .|..|.... .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 45666677 788998876664 33 666765432 1222 346799999999999999999998764
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=60.70 E-value=16 Score=23.94 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=41.1
Q ss_pred EEEEecCc---eeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044978 44 FVVYTTDE---KRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITLP-CDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 44 ~~VyVG~~---~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
+.+.||++ ++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+...|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 34456653 8898888887 6899999997543332 2 678887 68999999999988764
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=51.70 E-value=5.7 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=17.5
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999973
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=51.16 E-value=11 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=28.7
Q ss_pred eEEEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCCC
Q 044978 43 HFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPS 81 (142)
Q Consensus 43 ~~~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~ 81 (142)
++.|.-.+.+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 4444445789999998 345578899999999999974
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=47.95 E-value=34 Score=22.67 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=38.3
Q ss_pred CceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeeec---CcHHHHHHHHHHHhccC
Q 044978 50 DEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITLP---CDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 50 ~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~iP---C~~~~Fe~vl~~l~~~~ 105 (142)
++++|-+.-..| ..|.|+.++... .++.++|+ .+...|+.++..+-.+.
T Consensus 30 ~~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 30 GEFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred CCEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 356777776666 579999998764 36788888 79999999999988754
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.76 E-value=18 Score=24.92 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=26.2
Q ss_pred cCceeEEEeccCcCcHHHHHHHHhhhhhcCCCCCCCee
Q 044978 49 TDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPIT 86 (142)
Q Consensus 49 G~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~ 86 (142)
||-.|+-||. ...|.+|.++-.+-|++..+.+++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 6778999987 458999999999999875444333
No 7
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=43.03 E-value=9.9 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=20.2
Q ss_pred CCCCCeEEEEecCceeEE----------EeccCcCcHHHH
Q 044978 38 IANKGHFVVYTTDEKRFS----------VPLECLSNNVVI 67 (142)
Q Consensus 38 ~vpkG~~~VyVG~~~Rfv----------Vp~~yL~hp~F~ 67 (142)
.-..|++|+.|-.+-.|+ +|+-|||.|+-+
T Consensus 84 AG~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 84 AGKQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCCcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 456899999998776666 688899988743
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=39.77 E-value=41 Score=22.64 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=40.2
Q ss_pred CceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeee-c-CcHHHHHHHHHHHhccC
Q 044978 50 DEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITL-P-CDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 50 ~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~i-P-C~~~~Fe~vl~~l~~~~ 105 (142)
++++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+.
T Consensus 37 ~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 37 SREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred CCEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 356777777766 689999999865444 4678999 4 78899999999987654
No 9
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=35.67 E-value=49 Score=25.86 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCeEEEEecCceeEEEeccCcC-cH--HHHHHHHhhhhhcC--CCCCCCeeecCcHHHHHHHHHHHhccC
Q 044978 41 KGHFVVYTTDEKRFSVPLECLS-NN--VVIELLRMSEEEFG--LPSNGPITLPCDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 41 kG~~~VyVG~~~RfvVp~~yL~-hp--~F~eLL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
...+.+-|| +.||.+...-|. +| .|..|...- .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 355666777 689999887764 34 566664321 1232 346799999999999999999998764
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=33.97 E-value=63 Score=21.83 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=39.1
Q ss_pred EEEecCceeEEEeccCcC--cHHHHHHHHhhhhhcCCCCCCCeeec--CcHHHHHHHHHHHhcc
Q 044978 45 VVYTTDEKRFSVPLECLS--NNVVIELLRMSEEEFGLPSNGPITLP--CDSTFLSYVMSLVQRC 104 (142)
Q Consensus 45 ~VyVG~~~RfvVp~~yL~--hp~F~eLL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l~~~ 104 (142)
.+.| ++++|-+.-..|. .|.|+.++... ....|.|| .+.+.|+.++..+-.+
T Consensus 37 ~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 3344 4567776655554 69999999875 46788996 8999999999998765
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.77 E-value=78 Score=21.83 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=38.5
Q ss_pred EEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC--------C-CCCeeecCcHHHHHHHH
Q 044978 46 VYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP--------S-NGPITLPCDSTFLSYVM 98 (142)
Q Consensus 46 VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~--------~-~G~L~iPC~~~~Fe~vl 98 (142)
-|-|+-+||.| +++.+|.+.+|-.+...-||+. . +..|+|.=+.+..|.+-
T Consensus 12 ~f~ge~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 12 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp EETTEEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred EEcCCeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHHHH
Confidence 45688899876 4889999999999999999963 2 45677877666555544
No 12
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=27.36 E-value=22 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.4
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999974
No 13
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=26.98 E-value=6.4 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=9.9
Q ss_pred cCcCcHHHHHHHH
Q 044978 59 ECLSNNVVIELLR 71 (142)
Q Consensus 59 ~yL~hp~F~eLL~ 71 (142)
.|||||.|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5899999876643
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=26.17 E-value=1.2e+02 Score=20.12 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=37.0
Q ss_pred CceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044978 50 DEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITLP-CDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 50 ~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
++++|-+.-..| ..|.|+.++... . ++.|.|| .+...|+.++..+-.+.
T Consensus 32 ~~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 32 GGLVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred CCEEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 346777766666 479999998752 2 5789998 66889999999988764
No 15
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=26.04 E-value=64 Score=22.91 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred CCeEEEEecCceeEEEeccCcC-cHHHHHHHHhhhhhcCC-CCCCCeeecCcHHHHHHHHHHHhccC
Q 044978 41 KGHFVVYTTDEKRFSVPLECLS-NNVVIELLRMSEEEFGL-PSNGPITLPCDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 41 kG~~~VyVG~~~RfvVp~~yL~-hp~F~eLL~~aeeEfG~-~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
...+.+-|| +.||.+..+-|. +|- .+|..++...-+ +.+|.+-|-.|...|++||..++.+.
T Consensus 12 ~~~V~LNVG-G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 12 DELIVLNVS-GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp CCEEEEEET-TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEeC-CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 345555566 677888766543 221 133334433334 35799999999999999999999875
No 16
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=25.97 E-value=1.1e+02 Score=20.18 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=37.5
Q ss_pred CceeEEEeccCc--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044978 50 DEKRFSVPLECL--SNNVVIELLRMSEEEFGLPSNGPITLP-CDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 50 ~~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
++++|-+.-..| ..|.|+.++...-.| .....|.++ .+...|+.++..+-.+.
T Consensus 33 ~~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 33 EGREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CCEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 356777776666 479999999754333 235678888 68999999999988764
No 17
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=25.26 E-value=4.3 Score=32.92 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=19.1
Q ss_pred CcCCCCCeEEEEecCceeEEEeccCcCcHHH
Q 044978 36 SSIANKGHFVVYTTDEKRFSVPLECLSNNVV 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVG~~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+.-. -+=.-+=..+|+||.|
T Consensus 207 sl~AP~GHLP~~~~-lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ-LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC-TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc-cccHHHHHHHHcCccc
Confidence 45689999998642 1222233467888876
No 18
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=24.27 E-value=19 Score=23.64 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=18.3
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999973
No 19
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.15 E-value=95 Score=22.02 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=39.1
Q ss_pred EEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC--------C-CCCeeecCcHHHHHHHHH
Q 044978 45 VVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP--------S-NGPITLPCDSTFLSYVMS 99 (142)
Q Consensus 45 ~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~--------~-~G~L~iPC~~~~Fe~vl~ 99 (142)
+-|-|+-+||.| +++.++.|.+|-.+...-||+. . +..|+|.=+.+..|.+--
T Consensus 19 V~f~ge~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~eEAlkv 80 (101)
T 1wj6_A 19 VTFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 80 (101)
T ss_dssp EEETTEEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHHHHHHH
T ss_pred EEEcCCeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHHHHHHH
Confidence 345688899977 4899999999999999999963 2 455677776655555443
No 20
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.71 E-value=26 Score=24.28 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.6
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 21
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=22.65 E-value=24 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.6
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 22
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.39 E-value=74 Score=21.23 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=38.2
Q ss_pred EEecCceeEEEeccCcC--cHHHHHHHHhhhhhcCCCCCCCeeec--CcHHHHHHHHHHHhcc
Q 044978 46 VYTTDEKRFSVPLECLS--NNVVIELLRMSEEEFGLPSNGPITLP--CDSTFLSYVMSLVQRC 104 (142)
Q Consensus 46 VyVG~~~RfvVp~~yL~--hp~F~eLL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l~~~ 104 (142)
+.|| +++|-+.-..|. .|.|+.++..... .+..|.+| .+...|+.++..+-.+
T Consensus 37 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 37 LIVE-RKEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEET-TEEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEC-CEEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 3344 556666655554 6999999976433 25678887 7999999999998765
No 23
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.80 E-value=50 Score=18.38 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhcC
Q 044978 66 VIELLRMSEEEFG 78 (142)
Q Consensus 66 F~eLL~~aeeEfG 78 (142)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899987
Done!