Query 044978
Match_columns 142
No_of_seqs 119 out of 671
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 15:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044978.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044978hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6ia2 a.261.1.1 (A:83-233) M 56.2 0.46 3.4E-05 34.3 -2.1 31 36-68 117-148 (151)
2 d1z3xa2 a.261.1.1 (A:88-235) G 55.9 0.3 2.2E-05 35.2 -3.2 30 36-66 117-146 (148)
3 d1unda_ a.14.1.1 (A:) Advillin 52.7 2.5 0.00018 23.5 1.2 18 60-77 1-18 (36)
4 d2bkfa1 d.15.2.2 (A:1-85) Next 47.5 8 0.00058 25.0 3.3 50 47-98 11-69 (85)
5 d1fc4a_ c.67.1.4 (A:) 2-amino- 39.5 16 0.0011 28.2 4.5 37 46-82 39-80 (401)
6 d2al3a1 d.15.1.2 (A:10-85) Tet 34.6 18 0.0013 22.8 3.4 37 43-81 2-38 (76)
7 d1yu5x1 a.14.1.1 (X:10-76) Vil 29.0 9.3 0.00068 23.7 1.1 19 59-77 31-49 (67)
8 d3kvta_ d.42.1.2 (A:) akv3.1 v 24.6 19 0.0014 23.0 2.2 52 51-105 10-65 (103)
9 d2r85a1 c.30.1.8 (A:1-99) 5-fo 24.2 1.2 8.8E-05 30.1 -4.2 23 36-58 64-88 (99)
10 d1o51a_ d.58.5.4 (A:) Hypothet 23.9 34 0.0025 21.9 3.4 27 44-76 6-32 (102)
11 d1yu8x1 a.14.1.1 (X:42-76) Vil 22.8 15 0.0011 20.0 1.1 17 61-77 1-17 (35)
12 d1qzpa_ a.14.1.1 (A:) Dematin 22.4 10 0.00076 23.6 0.4 19 59-77 32-50 (68)
13 d1ujsa_ a.14.1.1 (A:) Actin-bi 21.9 13 0.00095 24.2 0.8 20 59-78 46-65 (88)
14 d1tjya_ c.93.1.1 (A:) AI-2 rec 21.1 45 0.0033 22.7 3.8 32 49-80 1-35 (316)
No 1
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=56.20 E-value=0.46 Score=34.33 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=20.7
Q ss_pred CcCCCCCeEEEEecCc-eeEEEeccCcCcHHHHH
Q 044978 36 SSIANKGHFVVYTTDE-KRFSVPLECLSNNVVIE 68 (142)
Q Consensus 36 ~~~vpkG~~~VyVG~~-~RfvVp~~yL~hp~F~e 68 (142)
+..+|+||+|+.-.-+ -| +--..|+||.|.+
T Consensus 117 ~l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 117 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred cCCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 4568999999864322 22 3334889999865
No 2
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=55.90 E-value=0.3 Score=35.21 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=20.1
Q ss_pred CcCCCCCeEEEEecCceeEEEeccCcCcHHH
Q 044978 36 SSIANKGHFVVYTTDEKRFSVPLECLSNNVV 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVG~~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+. +..+-+-|=-.+|+||.|
T Consensus 117 ~l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 117 DLSAPRGHLPLT-NQLRGVQVLNALLNHPAW 146 (148)
T ss_dssp STTSCTTCCSCC-CCTTCSHHHHHHHTCGGG
T ss_pred cCCCCCCCCCcC-CccchHHHHHHHhcCccc
Confidence 456899999974 444444444567788765
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.67 E-value=2.5 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=16.8
Q ss_pred CcCcHHHHHHHHhhhhhc
Q 044978 60 CLSNNVVIELLRMSEEEF 77 (142)
Q Consensus 60 yL~hp~F~eLL~~aeeEf 77 (142)
||+.--|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999997
No 4
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.48 E-value=8 Score=25.02 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=36.1
Q ss_pred EecCceeEEEeccCcCcHHHHHHHHhhhhhcCCC--------C-CCCeeecCcHHHHHHHH
Q 044978 47 YTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLP--------S-NGPITLPCDSTFLSYVM 98 (142)
Q Consensus 47 yVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~--------~-~G~L~iPC~~~~Fe~vl 98 (142)
|-||-+||.++.. +++.|.+|..+-+.-||.+ . +.-++|.|++++=|.+-
T Consensus 11 f~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~~ 69 (85)
T d2bkfa1 11 FKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 69 (85)
T ss_dssp ETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred ECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHHH
Confidence 4457899998533 4678999999999888842 2 34478999988766543
No 5
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=39.49 E-value=16 Score=28.23 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=28.3
Q ss_pred EEecCceeEE--EeccCcC---cHHHHHHHHhhhhhcCCCCC
Q 044978 46 VYTTDEKRFS--VPLECLS---NNVVIELLRMSEEEFGLPSN 82 (142)
Q Consensus 46 VyVG~~~Rfv--Vp~~yL~---hp~F~eLL~~aeeEfG~~~~ 82 (142)
|++.|+++|+ ..-+||+ ||.+++....+-+.||....
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcc
Confidence 4566888886 3446764 99999999999999997543
No 6
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.64 E-value=18 Score=22.78 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.3
Q ss_pred eEEEEecCceeEEEeccCcCcHHHHHHHHhhhhhcCCCC
Q 044978 43 HFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPS 81 (142)
Q Consensus 43 ~~~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~ 81 (142)
++.|..-..||..|++.= .-...+.|++|-+.|||+.
T Consensus 2 ~V~Vl~~~~rR~~VKvtP--~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 2 AVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred cEEEECCCCcEEEEEeCC--CcCHHHHHHHHHHHhCCCh
Confidence 466666778999998743 4478899999999999974
No 7
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.99 E-value=9.3 Score=23.72 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.9
Q ss_pred cCcCcHHHHHHHHhhhhhc
Q 044978 59 ECLSNNVVIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEf 77 (142)
.||++--|++++.|+.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999997
No 8
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=24.60 E-value=19 Score=23.02 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=34.7
Q ss_pred ceeEEEeccCcCc-H--HHHHHHHhhhhhcCC-CCCCCeeecCcHHHHHHHHHHHhccC
Q 044978 51 EKRFSVPLECLSN-N--VVIELLRMSEEEFGL-PSNGPITLPCDSTFLSYVMSLVQRCM 105 (142)
Q Consensus 51 ~~RfvVp~~yL~h-p--~F~eLL~~aeeEfG~-~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
+++|.+..+-|.. | .|..+ +.....+ +.+|.+-|--|...|++||..++.+.
T Consensus 10 G~~F~t~~~tL~~~~~s~l~~~---~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 10 GIRHETYKATLKKIPATRLSRL---TEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp TEEEEEEHHHHTTSCSSTTTTC---CTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred CEEEEEeHHHHhhCccchhHHH---HcCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 4777777665542 2 22222 2222233 35789999999999999999999874
No 9
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=24.20 E-value=1.2 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=17.5
Q ss_pred CcCCCCCeEEEEec-Cc-eeEEEec
Q 044978 36 SSIANKGHFVVYTT-DE-KRFSVPL 58 (142)
Q Consensus 36 ~~~vpkG~~~VyVG-~~-~RfvVp~ 58 (142)
..-+|.|-|++|+| |+ +.|.||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 45799999999999 32 3477774
No 10
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=23.90 E-value=34 Score=21.92 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=23.1
Q ss_pred EEEEecCceeEEEeccCcCcHHHHHHHHhhhhh
Q 044978 44 FVVYTTDEKRFSVPLECLSNNVVIELLRMSEEE 76 (142)
Q Consensus 44 ~~VyVG~~~RfvVp~~yL~hp~F~eLL~~aeeE 76 (142)
+-+|+++..|+ =+.|+...|++.+.+.
T Consensus 6 LrIy~~e~~~~------~g~pl~~~iv~~ar~~ 32 (102)
T d1o51a_ 6 LKIYLGEKDKH------SGKPLFEYLVKRAYEL 32 (102)
T ss_dssp EEEEEETTCEE------TTEEHHHHHHHHHHHT
T ss_pred EEEEEcchhcC------CceEHHHHHHHHHHHC
Confidence 56899988775 5899999999999974
No 11
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.83 E-value=15 Score=20.01 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.3
Q ss_pred cCcHHHHHHHHhhhhhc
Q 044978 61 LSNNVVIELLRMSEEEF 77 (142)
Q Consensus 61 L~hp~F~eLL~~aeeEf 77 (142)
|+.--|++++.|+.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999999987
No 12
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.38 E-value=10 Score=23.56 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.9
Q ss_pred cCcCcHHHHHHHHhhhhhc
Q 044978 59 ECLSNNVVIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEf 77 (142)
.||++--|++++.|+.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999997
No 13
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.85 E-value=13 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.5
Q ss_pred cCcCcHHHHHHHHhhhhhcC
Q 044978 59 ECLSNNVVIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~eLL~~aeeEfG 78 (142)
.||++--|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 49999999999999999984
No 14
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=21.07 E-value=45 Score=22.75 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=23.4
Q ss_pred cCceeEEEeccCcCcHHHHHHHHhhh---hhcCCC
Q 044978 49 TDEKRFSVPLECLSNNVVIELLRMSE---EEFGLP 80 (142)
Q Consensus 49 G~~~RfvVp~~yL~hp~F~eLL~~ae---eEfG~~ 80 (142)
|..+|..+=+..++||.|..+.+-++ +++||+
T Consensus 1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 34566666678999999999876555 467863
Done!