Query 044980
Match_columns 313
No_of_seqs 228 out of 3113
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.4E-36 1.2E-40 299.4 23.0 281 17-310 27-346 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.9E-28 1.5E-32 241.2 16.8 229 71-311 138-371 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.8E-24 6E-29 191.0 1.4 240 60-310 124-406 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-23 2.9E-28 186.6 1.5 226 71-306 100-351 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.4E-28 187.8 -1.9 224 71-309 53-304 (1255)
6 KOG0472 Leucine-rich repeat pr 99.8 9.3E-23 2E-27 174.1 -0.3 222 71-309 181-541 (565)
7 KOG0444 Cytoskeletal regulator 99.8 6.2E-21 1.4E-25 171.3 -3.4 219 71-308 101-351 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 3.3E-21 7.2E-26 164.6 -8.3 223 71-309 66-310 (565)
9 PRK15370 E3 ubiquitin-protein 99.7 3E-17 6.4E-22 156.9 15.9 113 75-207 201-314 (754)
10 PLN03210 Resistant to P. syrin 99.7 6.1E-17 1.3E-21 163.8 17.4 219 72-306 610-879 (1153)
11 PRK15387 E3 ubiquitin-protein 99.7 8.7E-17 1.9E-21 153.2 13.5 203 72-311 241-460 (788)
12 cd00116 LRR_RI Leucine-rich re 99.7 4.8E-18 1E-22 149.4 4.4 210 92-307 76-318 (319)
13 cd00116 LRR_RI Leucine-rich re 99.7 5.7E-18 1.2E-22 149.0 4.4 236 71-311 21-293 (319)
14 PLN03210 Resistant to P. syrin 99.7 5.9E-16 1.3E-20 156.7 17.5 215 73-307 657-904 (1153)
15 KOG4237 Extracellular matrix p 99.7 5.5E-18 1.2E-22 144.7 -0.2 227 74-309 68-359 (498)
16 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 132.3 -4.3 159 93-267 29-188 (264)
17 PRK15370 E3 ubiquitin-protein 99.6 4.7E-16 1E-20 148.8 8.4 205 72-310 219-429 (754)
18 KOG0618 Serine/threonine phosp 99.6 7.6E-17 1.6E-21 150.7 1.0 216 73-307 219-487 (1081)
19 KOG0618 Serine/threonine phosp 99.6 4.1E-17 9E-22 152.4 -2.2 223 71-306 239-510 (1081)
20 PRK15387 E3 ubiquitin-protein 99.6 2.1E-14 4.6E-19 137.0 14.1 201 73-309 222-435 (788)
21 KOG0617 Ras suppressor protein 99.6 1.2E-16 2.7E-21 122.1 -1.0 165 71-247 31-196 (264)
22 PLN03150 hypothetical protein; 99.6 3.8E-14 8.3E-19 134.7 14.1 155 14-184 367-528 (623)
23 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.6E-20 130.6 -1.3 205 89-309 61-335 (498)
24 KOG1909 Ran GTPase-activating 99.5 1.4E-14 3E-19 122.3 1.0 232 71-309 28-311 (382)
25 KOG0532 Leucine-rich repeat (L 99.2 6.3E-13 1.4E-17 119.0 -2.0 191 96-307 74-271 (722)
26 KOG1909 Ran GTPase-activating 99.2 9E-12 2E-16 105.5 2.0 188 93-284 88-310 (382)
27 COG4886 Leucine-rich repeat (L 99.2 6E-11 1.3E-15 107.6 7.3 174 95-286 114-291 (394)
28 COG4886 Leucine-rich repeat (L 99.2 6.6E-11 1.4E-15 107.3 7.0 191 101-310 97-291 (394)
29 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.6E-16 107.6 2.0 203 94-310 118-340 (505)
30 KOG0532 Leucine-rich repeat (L 99.1 3E-12 6.6E-17 114.7 -2.8 192 71-283 73-271 (722)
31 KOG3207 Beta-tubulin folding c 99.1 9.1E-12 2E-16 108.4 -2.2 211 71-285 119-339 (505)
32 PLN03150 hypothetical protein; 99.1 4.4E-10 9.4E-15 107.2 8.4 107 149-263 420-526 (623)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.4E-15 89.9 5.7 123 71-199 17-144 (175)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.1E-10 1.1E-14 88.6 4.3 64 117-184 13-77 (175)
35 KOG1259 Nischarin, modulator o 99.0 2E-10 4.2E-15 95.9 1.5 123 148-285 285-412 (490)
36 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.5E-15 96.4 0.8 131 169-312 282-415 (490)
37 COG5238 RNA1 Ran GTPase-activa 98.9 1.8E-10 3.9E-15 94.8 0.5 232 72-310 29-317 (388)
38 KOG0531 Protein phosphatase 1, 98.8 8.7E-10 1.9E-14 100.5 -0.4 124 72-207 71-196 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 1E-13 68.4 2.9 60 124-183 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 7.2E-09 1.6E-13 67.5 3.8 56 253-308 2-61 (61)
41 PF08263 LRRNT_2: Leucine rich 98.7 2.5E-08 5.5E-13 59.7 4.3 40 18-57 2-43 (43)
42 KOG4658 Apoptotic ATPase [Sign 98.7 3.2E-08 6.9E-13 97.0 7.5 108 71-182 543-653 (889)
43 KOG2982 Uncharacterized conser 98.7 3E-09 6.5E-14 88.8 0.1 207 95-310 69-291 (418)
44 KOG4658 Apoptotic ATPase [Sign 98.6 1.9E-08 4E-13 98.6 3.7 153 73-230 523-675 (889)
45 KOG0531 Protein phosphatase 1, 98.6 6.2E-09 1.4E-13 94.9 -0.4 218 71-310 93-319 (414)
46 KOG2982 Uncharacterized conser 98.5 1.1E-07 2.5E-12 79.5 3.9 209 96-312 44-265 (418)
47 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.7E-13 93.6 -4.6 128 124-266 165-293 (1096)
48 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.4E-13 94.7 -6.2 175 118-309 104-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.3 9.8E-09 2.1E-13 85.8 -6.5 176 124-307 186-374 (419)
50 KOG2120 SCF ubiquitin ligase, 98.3 3.4E-08 7.4E-13 82.6 -4.2 177 97-282 185-373 (419)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 52.4 3.1 38 272-310 1-38 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-06 3.4E-11 71.9 3.5 213 93-311 26-287 (388)
53 KOG4579 Leucine-rich repeat (L 97.9 6.2E-07 1.3E-11 66.8 -3.2 103 75-184 29-136 (177)
54 KOG4579 Leucine-rich repeat (L 97.9 6.3E-07 1.4E-11 66.7 -3.2 81 149-236 29-113 (177)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.5E-10 47.6 2.6 36 148-184 2-37 (44)
56 KOG1644 U2-associated snRNP A' 97.6 0.00014 3.1E-09 57.9 5.1 82 98-184 43-126 (233)
57 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.3E-10 73.9 2.3 133 147-290 122-268 (699)
58 PRK15386 type III secretion pr 97.5 0.00063 1.4E-08 61.0 9.0 136 119-282 48-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.3 7.7E-05 1.7E-09 71.8 1.5 151 123-279 122-282 (699)
60 KOG1644 U2-associated snRNP A' 97.2 0.00061 1.3E-08 54.4 5.1 78 222-304 63-148 (233)
61 KOG2123 Uncharacterized conser 97.0 4.9E-05 1.1E-09 63.5 -2.7 100 72-177 18-123 (388)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00057 1.2E-08 56.6 3.5 64 119-184 61-129 (260)
63 KOG2123 Uncharacterized conser 97.0 2.4E-05 5.2E-10 65.3 -4.7 89 62-153 30-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00067 1.5E-08 56.2 2.5 59 145-207 41-101 (260)
65 PRK15386 type III secretion pr 96.9 0.0042 9.1E-08 55.8 7.5 139 93-263 48-188 (426)
66 KOG4341 F-box protein containi 96.3 0.00015 3.3E-09 63.8 -4.9 13 222-234 319-331 (483)
67 PF13306 LRR_5: Leucine rich r 96.3 0.007 1.5E-07 45.3 4.4 81 93-180 8-90 (129)
68 PF00560 LRR_1: Leucine Rich R 96.2 0.0022 4.8E-08 32.0 1.0 21 273-294 1-21 (22)
69 PF13306 LRR_5: Leucine rich r 96.0 0.016 3.4E-07 43.4 5.4 106 118-232 7-112 (129)
70 KOG4308 LRR-containing protein 96.0 9E-05 2E-09 68.3 -8.2 83 99-183 89-184 (478)
71 KOG1947 Leucine rich repeat pr 95.9 0.002 4.4E-08 59.8 -0.1 113 71-183 186-307 (482)
72 KOG4308 LRR-containing protein 95.7 0.00019 4.1E-09 66.2 -7.5 188 75-267 89-305 (478)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 29.4 0.9 18 149-167 2-19 (22)
74 PF13504 LRR_7: Leucine rich r 94.7 0.023 4.9E-07 26.3 1.4 13 273-285 2-14 (17)
75 KOG4341 F-box protein containi 94.3 0.0026 5.5E-08 56.3 -4.2 200 73-282 138-356 (483)
76 KOG3864 Uncharacterized conser 91.7 0.033 7.2E-07 44.7 -1.0 28 253-280 152-184 (221)
77 KOG3864 Uncharacterized conser 90.5 0.058 1.3E-06 43.4 -0.7 81 75-156 103-185 (221)
78 smart00369 LRR_TYP Leucine-ric 90.1 0.27 5.9E-06 25.2 1.9 20 271-291 1-20 (26)
79 smart00370 LRR Leucine-rich re 90.1 0.27 5.9E-06 25.2 1.9 20 271-291 1-20 (26)
80 KOG1947 Leucine rich repeat pr 90.0 0.095 2.1E-06 48.6 0.1 59 222-284 242-307 (482)
81 PF13516 LRR_6: Leucine Rich r 88.7 0.1 2.2E-06 26.3 -0.4 16 123-138 2-17 (24)
82 KOG0473 Leucine-rich repeat pr 86.6 0.033 7.2E-07 45.8 -4.5 84 219-309 38-124 (326)
83 KOG4242 Predicted myosin-I-bin 85.7 6.3 0.00014 36.2 8.7 107 73-183 165-280 (553)
84 smart00364 LRR_BAC Leucine-ric 81.6 1 2.3E-05 23.3 1.3 18 272-290 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 77.8 2 4.4E-05 22.2 1.7 13 296-308 2-14 (26)
86 KOG0473 Leucine-rich repeat pr 77.1 0.072 1.6E-06 43.9 -5.8 85 95-184 40-124 (326)
87 smart00368 LRR_RI Leucine rich 76.8 1.7 3.6E-05 22.9 1.3 16 123-138 2-17 (28)
88 KOG3763 mRNA export factor TAP 70.4 2.4 5.2E-05 39.5 1.4 60 222-286 217-284 (585)
89 KOG3763 mRNA export factor TAP 64.2 4.3 9.2E-05 38.0 1.8 62 96-160 217-283 (585)
90 smart00367 LRR_CC Leucine-rich 49.3 13 0.00029 18.8 1.5 13 295-307 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-36 Score=299.38 Aligned_cols=281 Identities=29% Similarity=0.367 Sum_probs=178.2
Q ss_pred CHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcccCceEecCCCCCEEEEecCC------------CCCCcceecCCCCc
Q 044980 17 KESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLEN------------PFGYLKYSDAEDDD 84 (313)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~------------~l~~L~~L~l~~n~ 84 (313)
.+.|+.||++||+++.+|..++.+|+. ..+||.|.|+.|++ .++|+.+++++ .+++|+.|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 568999999999999888888899986 77899999999975 57899999876 57899999999999
Q ss_pred cccccccccc-CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCC
Q 044980 85 HYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKI 163 (313)
Q Consensus 85 ~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 163 (313)
+.+.+|..+. ++++|++|++++|.+ .+.+| ...+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l---~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNF---TGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCcc---ccccC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 9988888755 888999999998876 22233 123455555555555555555555555555555555555555455
Q ss_pred CCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccc----------------------cccccccccccc
Q 044980 164 PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV----------------------RFHQLIPTSFIR 221 (313)
Q Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~----------------------~~~~~~~~~~~~ 221 (313)
|..+.++++|++|++++|.+++.+|..++++++|+. +++++|.. .+.+.+|..+++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~--L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW--IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE--EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 555555555555555555555445555555555555 44444400 333344444555
Q ss_pred CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCC
Q 044980 222 LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISH 297 (313)
Q Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~ 297 (313)
+++|+.|++++|.+.+.+|..+..+. +|+.|++++|.+.+. +..+++|+.|++++|.+.+.+|..+..+++
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 55555555555555544444444444 555555555555443 445555666666666666556655666666
Q ss_pred CCEeeCCCCcCcc
Q 044980 298 LEYLDLSNNKFVT 310 (313)
Q Consensus 298 L~~L~l~~n~l~~ 310 (313)
|+.|++++|.++|
T Consensus 334 L~~L~L~~n~l~~ 346 (968)
T PLN00113 334 LQVLQLWSNKFSG 346 (968)
T ss_pred CCEEECcCCCCcC
Confidence 6666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=6.9e-28 Score=241.20 Aligned_cols=229 Identities=30% Similarity=0.372 Sum_probs=177.7
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+++|+.|++++|.+.+.+|..++++++|++|++++|.+ .+.+| .+.++++|++|++++|.+.+..|..+..+.+|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 456677777777777777777788888888888888875 33444 57778888888888888887777778888888
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 229 (313)
++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|+. |++++| .+.+.+|..+.++++|++|+
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~--L~L~~n--~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY--LFLYQN--KLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE--EECcCC--eeeccCchhHhhccCcCEEE
Confidence 88888888888788888888888888888888888888888888888888 787777 56666777788888888888
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN 305 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~ 305 (313)
+++|.+.+.+|..+..++ +|+.|++++|.+++. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 291 Ls~n~l~~~~p~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CcCCeeccCCChhHcCCC-----CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 888888877777777776 778888877777654 56677777777777777777777777777777777777
Q ss_pred CcCccc
Q 044980 306 NKFVTK 311 (313)
Q Consensus 306 n~l~~~ 311 (313)
|+++|.
T Consensus 366 n~l~~~ 371 (968)
T PLN00113 366 NNLTGE 371 (968)
T ss_pred CeeEee
Confidence 776653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-24 Score=190.96 Aligned_cols=240 Identities=23% Similarity=0.251 Sum_probs=179.6
Q ss_pred CCCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCE
Q 044980 60 TGHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEH 127 (313)
Q Consensus 60 ~~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 127 (313)
.|+++.+++.. -++.|+.|||+.|.++..-.+.|..-.++++|+|++|.++ .-....|..+..|.+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It--~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT--TLETGHFDSLNSLLT 201 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc--ccccccccccchhee
Confidence 46788887765 3567888888888877654455666677888888888762 222234556666777
Q ss_pred EEcCCccCCCCCchhhhhcCccCeeeccCcccC------------------------cCCCCCCCCCCCCCEEEccCCCC
Q 044980 128 IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ------------------------GKIPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 128 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~------------------------~~~~~~~~~l~~L~~L~l~~n~l 183 (313)
|.++.|+++...+..|+.+++|+.|+|..|.+. ..-...|..+.++++|+|..|++
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 777777777666666666666666666666554 22223455566777777777777
Q ss_pred CCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980 184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ 263 (313)
Q Consensus 184 ~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~ 263 (313)
+..-...+.+++.|+. |++++| .+..+-++.|...++|+.|+|++|.++...+..+..+. .|+.|+|++|.
T Consensus 282 ~~vn~g~lfgLt~L~~--L~lS~N--aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Ns 352 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQ--LDLSYN--AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNS 352 (873)
T ss_pred hhhhcccccccchhhh--hccchh--hhheeecchhhhcccceeEeccccccccCChhHHHHHH-----Hhhhhcccccc
Confidence 6555566778888888 888888 77777888898899999999999999988888888888 89999999999
Q ss_pred cccc----ccCCCCCCEEEccCCccccccCc---cccCCCCCCEeeCCCCcCcc
Q 044980 264 ISAA----LGKLSSLRNLDFSLNMLNGSIPL---SLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 264 l~~~----~~~~~~L~~L~l~~n~l~~~ip~---~l~~l~~L~~L~l~~n~l~~ 310 (313)
+... |..+++|++|||++|.++..|-+ .|.++++|+.|++.+|++..
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 8755 88899999999999998865533 56779999999999999864
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-23 Score=186.63 Aligned_cols=226 Identities=20% Similarity=0.178 Sum_probs=99.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCC----------------------CCCCchhhccCCCCCEE
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRL----------------------HVDSLSWLSSLLLLEHI 128 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~----------------------~~~~~~~~~~l~~L~~L 128 (313)
++++|+.+++..|.++ .+|...+...+|+.|+|.+|.++. .....+.|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 5666666666666655 244433333445555555555411 11112233333445555
Q ss_pred EcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc
Q 044980 129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208 (313)
Q Consensus 129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~ 208 (313)
++++|+|+......|..+.+|.+|.|+.|.++..-+..|.++++|+.|+|..|++.-.--..|.++++|+. +.+..|
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n--lklqrN- 255 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN--LKLQRN- 255 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh--hhhhhc-
Confidence 55555554444444445555555555555555222233444555555555555543211123444444444 444444
Q ss_pred cccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCcc
Q 044980 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNML 284 (313)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l 284 (313)
.+..+-...|..+.++++|+|+.|++...-...+..+. +|+.|++|+|.|... +.-.++|++|+|++|+|
T Consensus 256 -~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 256 -DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred -CcccccCcceeeecccceeecccchhhhhhcccccccc-----hhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 33333333344444444444444444433333333333 444444444444332 33334444444444444
Q ss_pred ccccCccccCCCCCCEeeCCCC
Q 044980 285 NGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 285 ~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+.--+.+|..+..|++|+|++|
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ccCChhHHHHHHHhhhhccccc
Confidence 4333333333333333333333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.6e-23 Score=187.81 Aligned_cols=224 Identities=25% Similarity=0.293 Sum_probs=175.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+.+|+.|.+++|++.. +.-.+..++.|+.+++..|++ ....+| .+..+..|++||+++|++... |..+....++
T Consensus 53 ~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~L--KnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~ 128 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNL--KNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNS 128 (1255)
T ss_pred HHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcccc--ccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCc
Confidence 56677778888877653 233466777888888888876 333444 677888888888888888754 6667777888
Q ss_pred CeeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccc-------------------
Q 044980 150 FFIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV------------------- 209 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~------------------- 209 (313)
-+|+|++|+|. .+|.. +-+++.|-+|||++|++. .+|..+..+..|+. |.+++|..
T Consensus 129 iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt--L~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 129 IVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT--LKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred EEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh--hhcCCChhhHHHHhcCccchhhhhhhc
Confidence 88888888887 55544 457788888888888876 56666777777777 77777610
Q ss_pred ----ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCC
Q 044980 210 ----RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLN 282 (313)
Q Consensus 210 ----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n 282 (313)
+....+|.++..+.+|..++++.|++. .+|+.+..++ +|+.|+||+|+|+.. ...-.+|+.|++|.|
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-----~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-----NLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-----hhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 001128888999999999999999998 6789999999 999999999999877 556678999999999
Q ss_pred ccccccCccccCCCCCCEeeCCCCcCc
Q 044980 283 MLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 283 ~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+++ .+|..++.+++|+.|.+.+|+++
T Consensus 279 QLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 279 QLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hhc-cchHHHhhhHHHHHHHhccCccc
Confidence 999 89999999999999999999886
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=9.3e-23 Score=174.05 Aligned_cols=222 Identities=26% Similarity=0.339 Sum_probs=148.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
+++.|+.+|+..|-++ .+|+.++.+..|..|++++|++ ..+|.|.+|..|++++++.|.+.-...+..+.+.++.
T Consensus 181 ~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki----~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI----RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc----ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 4566777777666554 4677777788888888888876 3344555555555555555555433222333555555
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc-----------------------
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC----------------------- 207 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n----------------------- 207 (313)
+|++..|++. +.|..+.-+.+|+.||+++|.++ ..|..++++ .|+. +-+.+|
T Consensus 256 vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~--L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 256 VLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKF--LALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeee--hhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 5555555555 45555555555555555555555 344445555 4444 444444
Q ss_pred --------------------------------------------------------------------------------
Q 044980 208 -------------------------------------------------------------------------------- 207 (313)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (313)
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~l 410 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVEL 410 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHH
Confidence
Q ss_pred ---------ccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----------
Q 044980 208 ---------MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----------- 267 (313)
Q Consensus 208 ---------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----------- 267 (313)
.....+.+|..+..+++|+.|++++|-+. .+|..++.+. .|+.++++.|+|...
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-----~Lq~LnlS~NrFr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-----RLQTLNLSFNRFRMLPECLYELQTLE 484 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhh-----hhheecccccccccchHHHhhHHHHH
Confidence 01111226677788888999999888876 4677777777 899999999876532
Q ss_pred ----------------ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 268 ----------------LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 268 ----------------~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+.++.+|..||+.+|.+. .||..++++.+|++|++++|.|.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 566788999999999999 99999999999999999999987
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=6.2e-21 Score=171.27 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=113.2
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 148 (313)
++..|+.||+++|++. .+|..+.+-+++.+|+|++|+| ..+| -+-++..|-.||+++|++....| .+..+.+
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I----etIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~ 174 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI----ETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSM 174 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc----ccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhh
Confidence 5667777777777765 3666666667777777777775 2333 35566666666667666655433 3556666
Q ss_pred cCeeeccCcccCc-------------------------CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980 149 LFFIVLSYNQFQG-------------------------KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203 (313)
Q Consensus 149 L~~L~L~~n~~~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~ 203 (313)
|++|.|++|++.. .+|.++..+.+|..+|++.|.+. .+|..+.++++|+. |+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lrr--LN 251 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRR--LN 251 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhe--ec
Confidence 6666666665431 24444444445555555555544 44444555555555 55
Q ss_pred ccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEE
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLD 278 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~ 278 (313)
+++| .+.. +....+.+.+|++|+++.|+++ .+|..+..++ +|+.|.+..|+++-. ++.+.+|+++.
T Consensus 252 LS~N--~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-----kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 252 LSGN--KITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-----KLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred cCcC--ceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH-----HHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 5554 2211 1112222333444444444443 2344444444 444444444443211 44444455555
Q ss_pred ccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980 279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l 308 (313)
.++|.+. -+|+.++.+..|+.|.|++|++
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhcccccce
Confidence 5555544 5555555555555555555544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=3.3e-21 Score=164.65 Aligned_cols=223 Identities=24% Similarity=0.299 Sum_probs=146.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
++..++++++.+|++. ..|++++.+..++.++.++|++ ....+.+..+..|..+++++|.+.... ..+..+-.|+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~~s~n~~~el~-~~i~~~~~l~ 140 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---SELPEQIGSLISLVKLDCSSNELKELP-DSIGRLLDLE 140 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---hhccHHHhhhhhhhhhhccccceeecC-chHHHHhhhh
Confidence 6778888888888876 4677788888888888888885 333346777788888888888877653 3467777788
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
.++..+|+++ ..|+.+.++.++..+++.+|++....|..+. ++.|++ ++...| +-+.+|+.++.+.+|+.|++
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~--ld~~~N---~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH--LDCNSN---LLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh--cccchh---hhhcCChhhcchhhhHHHHh
Confidence 8888888887 6777777777777888888877744444443 777777 766665 44457777777777777777
Q ss_pred cCCCCCCCcchhhhhhc----------------cc---cccCccEEEccccccccc---ccCCCCCCEEEccCCcccccc
Q 044980 231 SSVKLSQDISQVLDIFS----------------AY---GTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSI 288 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~----------------~~---~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~i 288 (313)
..|++.. +| .|..+. +. +.+++..||+..|++... +.-+.+|+.||+++|.|+ .+
T Consensus 214 ~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 214 RRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred hhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cC
Confidence 7777763 33 222222 00 111455555555555444 444455555566666555 45
Q ss_pred CccccCCCCCCEeeCCCCcCc
Q 044980 289 PLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 289 p~~l~~l~~L~~L~l~~n~l~ 309 (313)
|.+++++ +|+.|-+.||.+.
T Consensus 291 p~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred Ccccccc-eeeehhhcCCchH
Confidence 5555555 5555555555543
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3e-17 Score=156.94 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=57.3
Q ss_pred cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeee
Q 044980 75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (313)
|+.|++++|.++. +|..+. ++|++|++++|.+. .+| .+ ...|+.|++++|.+.. +|..+. .+|++|+
T Consensus 201 L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt----sLP~~l--~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~ 268 (754)
T PRK15370 201 ITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT----SIPATL--PDTIQEMELSINRITE-LPERLP--SALQSLD 268 (754)
T ss_pred CcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc----cCChhh--hccccEEECcCCccCc-CChhHh--CCCCEEE
Confidence 4555555555542 333332 35566666655541 222 11 1356666666666653 333222 3567777
Q ss_pred ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
+++|+++ .+|..+. ++|+.|++++|.+++ +|..+. ..|+. |++++|
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~--L~Ls~N 314 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITH--LNVQSN 314 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHH--HHhcCC
Confidence 7777766 4555443 467777777777663 333221 23444 455554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=6.1e-17 Score=163.82 Aligned_cols=219 Identities=21% Similarity=0.186 Sum_probs=132.5
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (313)
..+|+.|++.++.+. .++..+..+++|++|+|+++.. ...+|.+..+++|++|++++|.....+|..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~---l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKN---LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCC---cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 456777777777665 3566667778888888876652 345566777788888888877665666777777888888
Q ss_pred eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh-------------------cCc-----------------
Q 044980 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS-------------------KLN----------------- 195 (313)
Q Consensus 152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------------------~l~----------------- 195 (313)
|++++|.....+|..+ ++++|+.|++++|...+.+|.... .++
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 8888765444666544 566666666666643333322110 111
Q ss_pred --------------ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccc
Q 044980 196 --------------ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH 261 (313)
Q Consensus 196 --------------~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~ 261 (313)
+|+. |++++| .....+|..++++++|+.|++++|...+.+|..+ .++ +|+.|++++
T Consensus 765 ~~~~l~~~~~~~~~sL~~--L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-----sL~~L~Ls~ 834 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTR--LFLSDI--PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-----SLESLDLSG 834 (1153)
T ss_pred cccccchhhhhccccchh--eeCCCC--CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-----ccCEEECCC
Confidence 2333 333333 2223356667777777777777665444455433 233 566666666
Q ss_pred cccccc-ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 262 CQISAA-LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 262 n~l~~~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
|..-.. .....+|+.|++++|.+. .+|.++..+++|+.|++++|
T Consensus 835 c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 835 CSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 543222 122346777777777776 67777777777777777663
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=8.7e-17 Score=153.16 Aligned_cols=203 Identities=19% Similarity=0.133 Sum_probs=123.5
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (313)
.++|+.|++++|.++. +|.. .+.|++|++++|.+. .+|. -...|+.|++++|.++.. |. ..++|++
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~----~Lp~--lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~ 306 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT----HLPA--LPSGLCKLWIFGNQLTSL-PV---LPPGLQE 306 (788)
T ss_pred CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh----hhhh--chhhcCEEECcCCccccc-cc---cccccce
Confidence 4566667776666653 3421 234555555555531 1111 012344455555544432 11 2234555
Q ss_pred eeccCcccCcCCCCCCC-----------------CCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc
Q 044980 152 IVLSYNQFQGKIPSTLG-----------------NLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214 (313)
Q Consensus 152 L~L~~n~~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~ 214 (313)
|++++|++++ +|.... ...+|++|++++|++++ +|.. ..+|+. |++++| .+..
T Consensus 307 LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~--L~Ls~N--~L~~- 376 (788)
T PRK15387 307 LSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYK--LWAYNN--RLTS- 376 (788)
T ss_pred eECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccce--ehhhcc--cccc-
Confidence 5555555542 222110 01357777777777763 4432 245566 666666 3332
Q ss_pred cccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccC
Q 044980 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQ 294 (313)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~ 294 (313)
+|.. ..+|+.|++++|.+.+ +|.. .. +|+.|++++|++++......+|+.|++++|+++ .+|..+..
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s-----~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTS-LPVL---PS-----ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred Cccc---ccccceEEecCCcccC-CCCc---cc-----CCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhh
Confidence 4542 2468889999998885 4432 23 789999999998876333457899999999999 89999999
Q ss_pred CCCCCEeeCCCCcCccc
Q 044980 295 ISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 295 l~~L~~L~l~~n~l~~~ 311 (313)
+++|+.|++++|+|+|.
T Consensus 444 L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 444 LSSETTVNLEGNPLSER 460 (788)
T ss_pred ccCCCeEECCCCCCCch
Confidence 99999999999999975
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.8e-18 Score=149.44 Aligned_cols=210 Identities=24% Similarity=0.232 Sum_probs=88.4
Q ss_pred cccCCCCCcEeeccCCCCCCCCCCchhhccCC---CCCEEEcCCccCCCCC----chhhhhc-CccCeeeccCcccCcC-
Q 044980 92 VVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLL---LLEHIDLGQVHLGKAS----DCWIYSL-RHLFFIVLSYNQFQGK- 162 (313)
Q Consensus 92 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~~~~~- 162 (313)
.+.++++|++|++++|.+. ....+.+..+. +|++|++++|.+.+.. ...+..+ ++|++|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 76 GLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHhcCceeEEEccCCCCC--hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3444555555555555531 11111222222 2555555555554211 1122333 4455555555555421
Q ss_pred ---CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCccccccccccccccccccc----ccccccccCCCcCEEEcc
Q 044980 163 ---IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFS 231 (313)
Q Consensus 163 ---~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~ 231 (313)
++..+..+++|++|++++|.+++. ++..+...++|+. +++++| .+.. .+...+..+++|++|+++
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~--L~L~~n--~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV--LDLNNN--GLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE--EeccCC--ccChHHHHHHHHHhcccCCCCEEecC
Confidence 122333444555555555555422 1122333345555 555544 2211 122333444555555555
Q ss_pred CCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccccc----cCccccCC-CCC
Q 044980 232 SVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGS----IPLSLGQI-SHL 298 (313)
Q Consensus 232 ~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~----ip~~l~~l-~~L 298 (313)
+|.+.+.....+........+.|+.|++++|.+++. +..+++|+++++++|.+... +...+... +.+
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence 555544222222211000111455555555555421 33334555555555555532 22223333 455
Q ss_pred CEeeCCCCc
Q 044980 299 EYLDLSNNK 307 (313)
Q Consensus 299 ~~L~l~~n~ 307 (313)
+++++.+|.
T Consensus 310 ~~~~~~~~~ 318 (319)
T cd00116 310 ESLWVKDDS 318 (319)
T ss_pred hhcccCCCC
Confidence 555555544
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=5.7e-18 Score=149.00 Aligned_cols=236 Identities=22% Similarity=0.183 Sum_probs=172.0
Q ss_pred CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCC---c-hhhccCCCCCEEEcCCccCCCCCchh
Q 044980 71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDS---L-SWLSSLLLLEHIDLGQVHLGKASDCW 142 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~---~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 142 (313)
.+.+|+.++++++.++.. ++..+...+.|++++++++.+...... + ..+..+++|+.|++++|.+.+..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 345588888888887543 555567788899999999875210111 1 24677889999999999998766666
Q ss_pred hhhcCc---cCeeeccCcccCc----CCCCCCCCC-CCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccc
Q 044980 143 IYSLRH---LFFIVLSYNQFQG----KIPSTLGNL-TSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVR 210 (313)
Q Consensus 143 ~~~l~~---L~~L~L~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~ 210 (313)
+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+..++.|++ +++++| .
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~--L~l~~n--~ 176 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE--LNLANN--G 176 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE--EECcCC--C
Confidence 766666 9999999999873 223345566 8999999999999843 3345666788999 888888 4
Q ss_pred ccc----ccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----c-----cCCCCCCEE
Q 044980 211 FHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----L-----GKLSSLRNL 277 (313)
Q Consensus 211 ~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~-----~~~~~L~~L 277 (313)
+.+ .++..+..+++|++|++++|.+.+.....+.... ..+++|+.|++++|.+++. + ...+.|++|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 442 2444556667999999999999865443332221 1223899999999999864 1 124799999
Q ss_pred EccCCcccc----ccCccccCCCCCCEeeCCCCcCccc
Q 044980 278 DFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 278 ~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
++++|.+++ .+...+..+++|+++++++|.++.+
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999999972 3445566678999999999999753
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=5.9e-16 Score=156.72 Aligned_cols=215 Identities=22% Similarity=0.241 Sum_probs=141.0
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
++|+.|++++|.....+|..++++++|+.|++++|.. ...+|...++++|+.|++++|.....+|. ...+|++|
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~---L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L 730 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN---LEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWL 730 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC---cCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence 4444455544444444455555555555555554431 12233222445555555555533332222 23345666
Q ss_pred eccCcccCcCCCCCC------------------------------CCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980 153 VLSYNQFQGKIPSTL------------------------------GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~------------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L 202 (313)
++++|.+. .+|..+ ...++|+.|++++|...+.+|..++++++|+. |
T Consensus 731 ~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~--L 807 (1153)
T PLN03210 731 DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH--L 807 (1153)
T ss_pred ecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE--E
Confidence 66666654 344321 11246888889888877789999999999999 9
Q ss_pred cccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEc
Q 044980 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDF 279 (313)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l 279 (313)
++++| .....+|..+ ++++|+.|++++|.....+|.. .. +|+.|+|++|.++.. +..+++|+.|++
T Consensus 808 ~Ls~C--~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~-----nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 808 EIENC--INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---ST-----NISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred ECCCC--CCcCeeCCCC-CccccCEEECCCCCcccccccc---cc-----ccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence 98887 3333467665 6889999999998765555542 23 799999999998765 788999999999
Q ss_pred cCCccccccCccccCCCCCCEeeCCCCc
Q 044980 280 SLNMLNGSIPLSLGQISHLEYLDLSNNK 307 (313)
Q Consensus 280 ~~n~l~~~ip~~l~~l~~L~~L~l~~n~ 307 (313)
++|.-...+|..+..+++|+.+++++|.
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCc
Confidence 9965333788888899999999999884
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=5.5e-18 Score=144.74 Aligned_cols=227 Identities=19% Similarity=0.173 Sum_probs=144.8
Q ss_pred CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcC-CccCCCCCchhhhhcCccCee
Q 044980 74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG-QVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 152 (313)
.-..+.|..|.|+..-+.+|+.++.||+|||++|.| ......+|.+++.|..|-+. +|+|+......|..+..|+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 344556666777765555677777777777777775 11112256666665554443 366665544455555555555
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc-------------------------
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC------------------------- 207 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n------------------------- 207 (313)
.+.-|++.-.....|..++++..|.+.+|.+...--..+..+..++. +.+..|
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t--lhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT--LHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch--HhhhcCccccccccchhhhHHhhchhhcccc
Confidence 55555555333444444555555555554443111112333333333 222221
Q ss_pred ----------------------------------ccccccccc-cccccCCCcCEEEccCCCCCCCcchhhhhhcccccc
Q 044980 208 ----------------------------------MVRFHQLIP-TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252 (313)
Q Consensus 208 ----------------------------------~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (313)
........| ..|..+++|+.|++++|.+++.-+..|..+.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a----- 298 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA----- 298 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-----
Confidence 000111122 2368889999999999999988888888888
Q ss_pred CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
.++.|.|..|++... |.++..|+.|+|.+|+|+-.-|..|..+..|..|++-.|.+.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 899999999998654 888999999999999999888888999999999999988774
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-18 Score=132.34 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS 172 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 172 (313)
+.++.+++.|-|++|++ ....|.+..+.+|+.|++++|++... |.++..+++|+.|+++-|.+. .+|..|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 44567777788888885 33345677778888888888887654 556778888888888888777 77888888888
Q ss_pred CCEEEccCCCCC-CCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980 173 LKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251 (313)
Q Consensus 173 L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (313)
|+.||+.+|.+. ..+|..|..+..|+- ++++.| -...+|..++++++|+.|.+..|.+- .+|..++.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlra--lyl~dn---dfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt---- 173 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRA--LYLGDN---DFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT---- 173 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHH--HHhcCC---CcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH----
Confidence 888888888775 346666767777777 777776 23347777777778888887777766 4567777777
Q ss_pred cCccEEEccccccccc
Q 044980 252 YALVSLILSHCQISAA 267 (313)
Q Consensus 252 ~~L~~L~Ls~n~l~~~ 267 (313)
.|+.|.+.+|+++-.
T Consensus 174 -~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 174 -RLRELHIQGNRLTVL 188 (264)
T ss_pred -HHHHHhcccceeeec
Confidence 677777777776543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=4.7e-16 Score=148.79 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=155.3
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.++|+.|++++|.++. +|..+. ..|+.|+|++|.+. .+| .+. ..|+.|++++|.+.. +|..+ ..+|+
T Consensus 219 ~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~----~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~ 286 (754)
T PRK15370 219 QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT----ELPERLP--SALQSLDLFHNKISC-LPENL--PEELR 286 (754)
T ss_pred ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC----cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCc
Confidence 3579999999999884 666553 47999999999962 344 232 579999999999985 45433 24799
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.++ .+|..+. ++|+.|++++|.++. +|..+ .++|+. |.+++| .+.. +|..+. ++|+.|++
T Consensus 287 ~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~--L~Ls~N--~Lt~-LP~~l~--~sL~~L~L 353 (754)
T PRK15370 287 YLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKT--LEAGEN--ALTS-LPASLP--PELQVLDV 353 (754)
T ss_pred EEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--ccccee--ccccCC--cccc-CChhhc--CcccEEEC
Confidence 9999999998 5666543 479999999999984 55433 367888 888888 4544 565553 68999999
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEcccccccccccCC-CCCCEEEccCCccccccCcccc----CCCCCCEeeCCC
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKL-SSLRNLDFSLNMLNGSIPLSLG----QISHLEYLDLSN 305 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~L~~L~l~~n~l~~~ip~~l~----~l~~L~~L~l~~ 305 (313)
++|.+.. +|..+. + +|+.|++++|.++.....+ ..|+.|++++|++. .+|..+. ..+.+..+++.+
T Consensus 354 s~N~L~~-LP~~lp--~-----~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 354 SKNQITV-LPETLP--P-----TITTLDVSRNALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred CCCCCCc-CChhhc--C-----CcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 9999984 565442 3 8999999999998762222 46999999999998 6776543 357889999999
Q ss_pred CcCcc
Q 044980 306 NKFVT 310 (313)
Q Consensus 306 n~l~~ 310 (313)
|.++.
T Consensus 425 Npls~ 429 (754)
T PRK15370 425 NPFSE 429 (754)
T ss_pred CCccH
Confidence 99863
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=7.6e-17 Score=150.72 Aligned_cols=216 Identities=26% Similarity=0.328 Sum_probs=153.9
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (313)
+.++.|+.++|.++...+.. .-.+|++++++.|.+ ..+| ++..+.+|+.++..+|.++ ..|..+....+|+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l----~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNL----SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCcceeecccc--ccccceeeecchhhh----hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 55666666666665332221 225788888888885 3333 7788888888888888884 44666777788888
Q ss_pred eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhh-h-------------------------cCccccccccccc
Q 044980 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL-S-------------------------KLNELSSFLLNLV 205 (313)
Q Consensus 152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~-------------------------~l~~L~~~~L~l~ 205 (313)
|.+..|.+. .+|.....++.|++|+|..|.+. ..|..+ . .++.|+. |.+.
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~--Lyla 367 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE--LYLA 367 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH--HHHh
Confidence 888888887 67777788899999999999886 344321 1 1235556 6666
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc------------------
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------------------ 267 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------------------ 267 (313)
+| .+...+...+.++.+|++|+|++|++.......+..++ .|+.|+||||+++..
T Consensus 368 nN--~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-----~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 368 NN--HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-----ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred cC--cccccchhhhccccceeeeeecccccccCCHHHHhchH-----HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence 66 66666777788889999999999999876666778888 899999999987643
Q ss_pred -------ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCc
Q 044980 268 -------LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNK 307 (313)
Q Consensus 268 -------~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~ 307 (313)
+..++.|+.+|++.|+++. .+|.. ...++|++||++||.
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeechhhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCc
Confidence 5566778888888888773 22222 222788888888875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=4.1e-17 Score=152.44 Aligned_cols=223 Identities=24% Similarity=0.238 Sum_probs=159.7
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCC-------------------CCCch-hhccCCCCCEEEc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLH-------------------VDSLS-WLSSLLLLEHIDL 130 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-------------------~~~~~-~~~~l~~L~~L~l 130 (313)
.-.+|+++++++|++.+ +|+.++.+.+|+.+...+|.+... ..-+| ...+++.|++|++
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 34567777777777664 455566666777776666655110 01122 3445788899999
Q ss_pred CCccCCCCCchhhhhc-------------------------CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC
Q 044980 131 GQVHLGKASDCWIYSL-------------------------RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF 185 (313)
Q Consensus 131 ~~n~l~~~~~~~~~~l-------------------------~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (313)
..|.+....+..+..+ ..|+.|++.+|.++...-+.+.+++.|+.|+|++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 9888865433222211 127888999999987766778899999999999999985
Q ss_pred CCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccc
Q 044980 186 TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS 265 (313)
Q Consensus 186 ~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~ 265 (313)
.....+.++..|++ |++++| .+. .+|..+.++..|++|...+|.+.. +| .+..++ .|+.+|+|.|+++
T Consensus 398 fpas~~~kle~Lee--L~LSGN--kL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~-----qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 398 FPASKLRKLEELEE--LNLSGN--KLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLP-----QLKVLDLSCNNLS 465 (1081)
T ss_pred CCHHHHhchHHhHH--Hhcccc--hhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcC-----cceEEecccchhh
Confidence 44457888999999 999999 444 378999999999999999999984 45 678888 9999999999998
Q ss_pred cc---ccCC-CCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 266 AA---LGKL-SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 266 ~~---~~~~-~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
.. .... ++|++||+++|.-..---..|..+.++...++.-|
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 76 2223 79999999999733233334445556665555554
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.1e-14 Score=136.99 Aligned_cols=201 Identities=21% Similarity=0.170 Sum_probs=117.7
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
++|+.|++..|+++. +|. ..+.|++|++++|++. .+|.+ .++|+.|++++|.+... |. ...+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt----sLP~l--p~sL~~L~Ls~N~L~~L-p~---lp~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT----SLPVL--PPGLLELSIFSNPLTHL-PA---LPSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC----cccCc--ccccceeeccCCchhhh-hh---chhhcCEE
Confidence 357778888887774 453 2467888888888762 23321 35778888888877643 22 23458888
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|+++ .+|.. .++|+.|++++|.+.+ +|.. ...|+. |.+++| .+.. +|.. ..+|+.|++++
T Consensus 288 ~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~--L~Ls~N--~L~~-LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 288 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCK--LWAYNN--QLTS-LPTL---PSGLQELSVSD 351 (788)
T ss_pred ECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccc--cccccC--cccc-cccc---ccccceEecCC
Confidence 88888887 55642 4679999999999885 4432 234556 666666 3332 3421 13677777777
Q ss_pred CCCCCCcchhhhh-------------hccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCC
Q 044980 233 VKLSQDISQVLDI-------------FSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLE 299 (313)
Q Consensus 233 n~l~~~~~~~l~~-------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~ 299 (313)
|++.+ +|..... ++. ...+|+.|++++|++++.-...++|+.|++++|+++ .+|.. ..+|+
T Consensus 352 N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~ 425 (788)
T PRK15387 352 NQLAS-LPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLL 425 (788)
T ss_pred CccCC-CCCCCcccceehhhccccccCcc-cccccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhh
Confidence 77764 2321100 000 011455566666655543222345666666666665 35542 23456
Q ss_pred EeeCCCCcCc
Q 044980 300 YLDLSNNKFV 309 (313)
Q Consensus 300 ~L~l~~n~l~ 309 (313)
.|++++|+|+
T Consensus 426 ~L~Ls~NqLt 435 (788)
T PRK15387 426 SLSVYRNQLT 435 (788)
T ss_pred hhhhccCccc
Confidence 6666666664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=1.2e-16 Score=122.11 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=128.0
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
++.+++.|.+++|.++. +|+.+..+.+|+.|++++|++ ....+.++.+++|+.|+++.|++.. .|..|+.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhhhhc-CccccCCCchhh
Confidence 56778888888888874 677788888888888888885 3333478888888888888888764 466688888888
Q ss_pred eeeccCcccC-cCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980 151 FIVLSYNQFQ-GKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 151 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 229 (313)
+|++.+|.+. ..+|..|..+..|+-|++++|.+. .+|..++++++||. +.+..| .+. .+|..++.+++|++|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi--l~lrdn--dll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI--LSLRDN--DLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE--EeeccC--chh-hCcHHHHHHHHHHHHh
Confidence 8888888876 457888888888888888888887 67778888888888 777776 222 2788888888888888
Q ss_pred ccCCCCCCCcchhhhhhc
Q 044980 230 FSSVKLSQDISQVLDIFS 247 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~ 247 (313)
+++|.++ .+|+.++.+.
T Consensus 180 iqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANLD 196 (264)
T ss_pred cccceee-ecChhhhhhh
Confidence 8888887 4555555544
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=3.8e-14 Score=134.71 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=120.1
Q ss_pred cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCc-----ccCceEecCCCCCEEEEecCCCCCCcceecCCCCccccc
Q 044980 14 VGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCC-----KWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMR 88 (313)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c-----~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~ 88 (313)
..+.+.|..||+.+|.++.++.. .+|. + ++| .|.|+.|...... ....++.|+|++|.+.|.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g-~~C~p~~~~w~Gv~C~~~~~~--------~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--G-DPCVPQQHPWSGADCQFDSTK--------GKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC--C-CCCCCcccccccceeeccCCC--------CceEEEEEECCCCCcccc
Confidence 34567899999999999876532 4785 3 344 7999999521110 001244556667999999
Q ss_pred ccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC
Q 044980 89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL 167 (313)
Q Consensus 89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 167 (313)
+|..++++++|+.|+|++|.+ .+.+| .+..+++|+.|++++|.+++.+|..+..+++|++|++++|.++|.+|..+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 999999999999999999985 45666 68889999999999999999899889999999999999999999999877
Q ss_pred CCC-CCCCEEEccCCCCC
Q 044980 168 GNL-TSLKQIDLSHNQFN 184 (313)
Q Consensus 168 ~~l-~~L~~L~l~~n~l~ 184 (313)
... .++..+++.+|...
T Consensus 511 ~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 511 GGRLLHRASFNFTDNAGL 528 (623)
T ss_pred hhccccCceEEecCCccc
Confidence 653 46678888888644
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-15 Score=130.55 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=149.5
Q ss_pred ccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccC-cccCcCCCC
Q 044980 89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY-NQFQGKIPS 165 (313)
Q Consensus 89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~ 165 (313)
+|..+. +.-.++.|..|+| ..+| +|+.+++|+.+|+++|.|+...|++|..+.+|..|.+.+ |+|+..-..
T Consensus 61 VP~~LP--~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCC--CcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 454432 3457899999997 3444 799999999999999999999999999999977776666 999955556
Q ss_pred CCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc-ccccCCCcCEEEccCCCCCC-------
Q 044980 166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT-SFIRLCKLTSIDFSSVKLSQ------- 237 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~------- 237 (313)
.|.++..++.|.++-|++.-...+.|..++++.. |.+..| .+. .++. .+..+.+++.+.+..|.+-.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l--LslyDn--~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL--LSLYDN--KIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch--hcccch--hhh-hhccccccchhccchHhhhcCccccccccchh
Confidence 7889999999999999999777788999999998 887777 222 2343 56677777777776665211
Q ss_pred -----Ccc--------------------------------------------------hhhhhhccccccCccEEEcccc
Q 044980 238 -----DIS--------------------------------------------------QVLDIFSAYGTYALVSLILSHC 262 (313)
Q Consensus 238 -----~~~--------------------------------------------------~~l~~~~~~~~~~L~~L~Ls~n 262 (313)
..| ..|..+ ++|+.|+|++|
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-----~~L~~lnlsnN 284 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-----PNLRKLNLSNN 284 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-----ccceEeccCCC
Confidence 000 112222 26777777777
Q ss_pred ccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 263 QISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 263 ~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
++++. |.....+++|.|..|++.-.-...|.++..|+.|+|.+|+|+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 77665 667777777777777776444446667777777888888776
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-14 Score=122.35 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=168.6
Q ss_pred CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCCch--------hhccCCCCCEEEcCCccCCCC
Q 044980 71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDSLS--------WLSSLLLLEHIDLGQVHLGKA 138 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--------~~~~l~~L~~L~l~~n~l~~~ 138 (313)
.+..++.+++++|.+... +...+.+.+.|++.++++-.-......+| ++.++++|++++||+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456677888888988755 34456677899999988654211122222 356678999999999999766
Q ss_pred Cchh----hhhcCccCeeeccCcccCcC-------------CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCccc
Q 044980 139 SDCW----IYSLRHLFFIVLSYNQFQGK-------------IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNEL 197 (313)
Q Consensus 139 ~~~~----~~~l~~L~~L~L~~n~~~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L 197 (313)
.+.. +..+..|++|+|.+|.+.-. ......+-++|+.+...+|++... +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 6543 45666799999999987611 123345668899999999998533 23456777899
Q ss_pred cccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcc----hhhhhhccccccCccEEEccccccccc----
Q 044980 198 SSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDIS----QVLDIFSAYGTYALVSLILSHCQISAA---- 267 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~~~~~~L~~L~Ls~n~l~~~---- 267 (313)
+. +.+..|-....+ .+...+..+++|++||+.+|.++.... ..+..|+ +|+.++++.|.+...
T Consensus 188 ee--vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-----~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 188 EE--VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-----HLRELNLGDCLLENEGAIA 260 (382)
T ss_pred ce--EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-----hheeecccccccccccHHH
Confidence 99 888887222222 355678889999999999999986443 4455566 899999999998755
Q ss_pred -----ccCCCCCCEEEccCCcccc----ccCccccCCCCCCEeeCCCCcCc
Q 044980 268 -----LGKLSSLRNLDFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 268 -----~~~~~~L~~L~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
-...++|++|.+.+|.++. .+...+...+.|+.|+|++|++.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3347899999999999984 22334456889999999999983
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=6.3e-13 Score=118.95 Aligned_cols=191 Identities=24% Similarity=0.313 Sum_probs=141.3
Q ss_pred CCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980 96 LSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174 (313)
Q Consensus 96 l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 174 (313)
+..-...|++.|.+ ..+| .++.+..|+.+.+.+|.+.. +|..++.+..|.+++++.|+++ .+|..++.++ |+
T Consensus 74 ltdt~~aDlsrNR~----~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF----SELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccchhhhhcccccc----ccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 44445677888875 3344 46666778888888887764 4666888888999999999888 7788787777 88
Q ss_pred EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980 175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL 254 (313)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 254 (313)
.|.+++|+++ .+|..++....|.. ++.+.| .+. .+|..++++.+|+.|.+..|.+.. +|+.+..++ |
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~--ld~s~n--ei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp------L 213 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAH--LDVSKN--EIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP------L 213 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHH--hhhhhh--hhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc------e
Confidence 8888998887 67777887777777 888887 332 377788888889988888888875 456666665 8
Q ss_pred cEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCC---CCEeeCCCCc
Q 044980 255 VSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISH---LEYLDLSNNK 307 (313)
Q Consensus 255 ~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~---L~~L~l~~n~ 307 (313)
..||+|.|+++.. |..+.+|++|-|.+|.+. .-|..++-.-. .++|+...++
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8888888887766 788888888888888887 55555543322 3456655553
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=9e-12 Score=105.54 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=112.5
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCch----hhccCCCCCEEEcCCccCCCCCchh-------------hhhcCccCeeecc
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLS----WLSSLLLLEHIDLGQVHLGKASDCW-------------IYSLRHLFFIVLS 155 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~L~ 155 (313)
+..+++|++|+||+|.+ -...++ -+.++..|++|++.+|.+....-.. .+.-++|+++...
T Consensus 88 L~~~~~L~~ldLSDNA~--G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAF--GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HhcCCceeEeecccccc--CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34455677777777765 222222 2455666777777776664322111 1122346777777
Q ss_pred CcccCcC----CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccccc--cccccccccCCCc
Q 044980 156 YNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVRFH--QLIPTSFIRLCKL 225 (313)
Q Consensus 156 ~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~--~~~~~~~~~~~~L 225 (313)
+|.+... +...|...+.|+.+.+..|.+... +...+..+++|+. |++..|..... ..+...+..+++|
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev--Ldl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV--LDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee--eecccchhhhHHHHHHHHHhcccchh
Confidence 7665421 123344556677777777766422 1234556677777 66666611111 1244555667788
Q ss_pred CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCcc
Q 044980 226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNML 284 (313)
Q Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l 284 (313)
+.|++++|.+.......+...-....++|+.+.+.+|.++.. ....+.|+.|+|++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888888887666655554444456888888888888755 55577888889988888
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=6e-11 Score=107.57 Aligned_cols=174 Identities=30% Similarity=0.402 Sum_probs=84.8
Q ss_pred CCCCCcEeeccCCCCCCCCCCch-hhccCC-CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLL-LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS 172 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 172 (313)
.++.++.|++.+|.+ ..++ ...... +|+.|++++|.+... |..+..+++|+.|++++|++. .+|......+.
T Consensus 114 ~~~~l~~L~l~~n~i----~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLDNNNI----TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred cccceeEEecCCccc----ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence 345555666655553 2222 222232 566666666655443 122555556666666666655 44444435555
Q ss_pred CCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcccccc
Q 044980 173 LKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252 (313)
Q Consensus 173 L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (313)
|+.|++++|.+. .+|........|++ +.+++| . ....+..+.++.++..+.+.+|++... +..+..++
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~--l~~~~N--~-~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~----- 255 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEE--LDLSNN--S-IIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLS----- 255 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhh--hhhcCC--c-ceecchhhhhcccccccccCCceeeec-cchhcccc-----
Confidence 666666666655 34443334444555 555554 1 111344444555555555555554421 23333333
Q ss_pred CccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980 253 ALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~ 286 (313)
.++.|++++|.++.. ++...+++.|++++|.+..
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCccccc
Confidence 455555555555444 4445555555555555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=6.6e-11 Score=107.33 Aligned_cols=191 Identities=32% Similarity=0.436 Sum_probs=140.2
Q ss_pred EeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcC-ccCeeeccCcccCcCCCCCCCCCCCCCEEEcc
Q 044980 101 YLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR-HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS 179 (313)
Q Consensus 101 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 179 (313)
.+.+..+.+ ......+..++.++.+++.+|.++...+ ...... +|+.|++++|++. .+|..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~---~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRL---RSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccc---ccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 466666653 2334445666788899999888876544 344553 8999999999888 666667888999999999
Q ss_pred CCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEc
Q 044980 180 HNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259 (313)
Q Consensus 180 ~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L 259 (313)
+|.+. .+|...+..+.|+. +.+++| .+. .+|........|+++.+++|.+. ..+..+..+. .+..+.+
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~--L~ls~N--~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~-----~l~~l~l 239 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNN--LDLSGN--KIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK-----NLSGLEL 239 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhh--eeccCC--ccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-----ccccccc
Confidence 99987 45555557788888 888887 332 36665556667889999888533 2345566666 7888888
Q ss_pred ccccccc--c-ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 260 SHCQISA--A-LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 260 s~n~l~~--~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
.+|++.. . +..+++++.|++++|.++ .++. +..+.++++|++++|.++.
T Consensus 240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 240 SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred CCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccc
Confidence 8888765 2 777888999999999988 5665 7888889999999887764
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-11 Score=107.59 Aligned_cols=203 Identities=21% Similarity=0.164 Sum_probs=131.7
Q ss_pred cCCCCCcEeeccCCCCCCCCCCch---hhccCCCCCEEEcCCccCCCCC--chhhhhcCccCeeeccCcccCcCCCCC-C
Q 044980 94 GNLSNLQYLDLSWIDCRLHVDSLS---WLSSLLLLEHIDLGQVHLGKAS--DCWIYSLRHLFFIVLSYNQFQGKIPST-L 167 (313)
Q Consensus 94 ~~l~~L~~L~L~~n~~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~-~ 167 (313)
.++..|+++.|.++.. +..+ ....|++++.||++.|-+..-. ......+++|+.|+++.|.+..-.... -
T Consensus 118 sn~kkL~~IsLdn~~V----~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV----EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccc----cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3567888888887774 2222 3556888888888888765422 234567888888888888876222211 1
Q ss_pred CCCCCCCEEEccCCCCCCC-CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCc-chhhhh
Q 044980 168 GNLTSLKQIDLSHNQFNFT-SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDI 245 (313)
Q Consensus 168 ~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~ 245 (313)
..++.|+.|.++.|.++.. +-..+..+++|.. |.+.+|...+ .-......+..|+.|+|++|++-... ....+.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~--L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV--LYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH--hhhhcccccc--eecchhhhhhHHhhccccCCccccccccccccc
Confidence 2467788888888888632 2233456788888 8888873111 11222334567888888888876432 233455
Q ss_pred hccccccCccEEEccccccccc----------ccCCCCCCEEEccCCccccccCc--cccCCCCCCEeeCCCCcCcc
Q 044980 246 FSAYGTYALVSLILSHCQISAA----------LGKLSSLRNLDFSLNMLNGSIPL--SLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 246 ~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~L~~L~l~~n~l~~~ip~--~l~~l~~L~~L~l~~n~l~~ 310 (313)
++ .|..|+++.+.+++. ...+++|+.|+++.|++. ..+. .+..+++|+.|.+..|.++-
T Consensus 270 l~-----~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 270 LP-----GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cc-----chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 55 788888888887655 345778888999888885 3332 34456677777777777653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=3e-12 Score=114.68 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=152.0
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+..-...|++.|.+. .+|..+..+..|+.+.|..|.+ ..+| .++++..|+++|++.|+++.. |..++.++ |
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-L 145 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-L 145 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-c
Confidence 3445567788888887 5788888888999999998886 3333 688899999999999999765 44455554 8
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 229 (313)
++|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+. +.+..| .+.. +|..+..+ .|..||
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~--l~vrRn--~l~~-lp~El~~L-pLi~lD 217 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD--LNVRRN--HLED-LPEELCSL-PLIRLD 217 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH--HHHhhh--hhhh-CCHHHhCC-ceeeee
Confidence 99999999998 88988998899999999999987 57778899999988 888887 3333 67777755 599999
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCc
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNM 283 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~ 283 (313)
++.|++. .+|..|..+. .|+.|-|.+|.+.+. -+...-.++|+..-++
T Consensus 218 fScNkis-~iPv~fr~m~-----~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMR-----HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cccCcee-ecchhhhhhh-----hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9999998 6788899998 999999999999876 2222334566666664
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.1e-12 Score=108.36 Aligned_cols=211 Identities=21% Similarity=0.136 Sum_probs=131.1
Q ss_pred CCCCcceecCCCCccccccc-ccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchh-hhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSK-LVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCW-IYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 148 (313)
+++.|+.+.+.......... .....|++++.|||+.|-+............+++|+.|+++.|++....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 66777777777766543221 2456788888888888865222111223456888888888888876443321 235666
Q ss_pred cCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc-cccccccCCCcC
Q 044980 149 LFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL-IPTSFIRLCKLT 226 (313)
Q Consensus 149 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~-~~~~~~~~~~L~ 226 (313)
|+.|.++.|.++. .+......+|+|+.|++..|............+..|++ |++++| .+... .-...+.++.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~--LdLs~N--~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE--LDLSNN--NLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh--ccccCC--cccccccccccccccchh
Confidence 8888888888772 22233456788888888888532233333445677888 888887 22221 123457778888
Q ss_pred EEEccCCCCCCC-cchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccc
Q 044980 227 SIDFSSVKLSQD-ISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 227 ~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~ 285 (313)
.|+++.+.+... .|+.=.......+++|+.|+++.|++.++ +..+++|+.|.+..|.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888888887642 12210000111234889999999988766 445667777787777776
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=4.4e-10 Score=107.19 Aligned_cols=107 Identities=23% Similarity=0.277 Sum_probs=79.2
Q ss_pred cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI 228 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 228 (313)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+. |++++| .+.+.+|+.++++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~--LdLs~N--~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV--LDLSYN--SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE--EECCCC--CCCCCCchHHhcCCCCCEE
Confidence 667777777777777777777777888888888777777777777777777 777777 6667777777777788888
Q ss_pred EccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980 229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ 263 (313)
Q Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~ 263 (313)
++++|.+.+.+|..+..... ++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~----~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLL----HRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccc----cCceEEecCCc
Confidence 88888887777776654320 45566776665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.9e-10 Score=89.95 Aligned_cols=123 Identities=23% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCCcceecCCCCccccccccccc-CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
+..+++.|++.+|.++.. +.++ .+.+|+.|++++|.+ ..++.+..++.|++|++++|.++...+.....+++|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I----~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQI----TKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS------S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCC----ccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 445678888888888742 2355 477899999999986 345557778899999999999987644323468889
Q ss_pred CeeeccCcccCcCC-CCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccc
Q 044980 150 FFIVLSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSS 199 (313)
Q Consensus 150 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~ 199 (313)
++|++++|++...- -..+..+++|+.|++.+|.++...- ..+..+++|+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 99999999887321 1345678889999999988763311 13444555555
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=5.1e-10 Score=88.57 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=11.5
Q ss_pred hhhccCCCCCEEEcCCccCCCCCchhhh-hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980 117 SWLSSLLLLEHIDLGQVHLGKASDCWIY-SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184 (313)
Q Consensus 117 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (313)
+.+.+..++++|++++|.++..- .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred ccccccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC
Confidence 33444555666666666665421 132 3455666666666666 232 3455666666666666665
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2e-10 Score=95.90 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=67.9
Q ss_pred ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS 227 (313)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 227 (313)
.|++++|++|.++ .+.++..-.|.++.|+++.|.+... +.+..+.+|+. |++++| .+.. +-.+-.++.+++.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~--LDLS~N--~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL--LDLSGN--LLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE--eecccc--hhHh-hhhhHhhhcCEee
Confidence 3666666666666 5555555566666666666665522 12455555555 555555 1111 1222233445666
Q ss_pred EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccc
Q 044980 228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~ 285 (313)
|.++.|.+... ..+..+- +|..||+++|+|... ++++|.|+.+.+.+|.+.
T Consensus 357 L~La~N~iE~L--SGL~KLY-----SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLY-----SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhh--hhhHhhh-----hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66666665432 2244444 566666666666543 666666666666666666
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.6e-10 Score=96.38 Aligned_cols=131 Identities=25% Similarity=0.261 Sum_probs=102.8
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcc
Q 044980 169 NLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSA 248 (313)
Q Consensus 169 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (313)
....|+++|+++|.++ .+..++.-.+.++. |++++| ++.. .+.++.+.+|+.||+++|.++.. ...-..+-
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~--L~lS~N--~i~~--v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLG- 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRR--LILSQN--RIRT--VQNLAELPQLQLLDLSGNLLAEC-VGWHLKLG- 352 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeE--Eecccc--ceee--ehhhhhcccceEeecccchhHhh-hhhHhhhc-
Confidence 3456899999999987 56667777889999 999998 5443 34477889999999999998743 22223344
Q ss_pred ccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCcCcccc
Q 044980 249 YGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 249 ~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
+++.|.|++|.+.+. +..+=+|..||+++|+|.. .--..++++|-|+.+.+.+|.+.+.+
T Consensus 353 ----NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 353 ----NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ----CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 789999999998776 7778889999999999873 22336789999999999999998754
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.94 E-value=1.8e-10 Score=94.77 Aligned_cols=232 Identities=19% Similarity=0.181 Sum_probs=159.3
Q ss_pred CCCcceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCC--------chhhccCCCCCEEEcCCccCCCCC
Q 044980 72 FGYLKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDS--------LSWLSSLLLLEHIDLGQVHLGKAS 139 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~ 139 (313)
+..++.+++++|.+..... ..+.+-.+|+..+++.-........ .+++.+|++|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4566777778888876533 3455567888888876442111111 345788999999999999998766
Q ss_pred ch----hhhhcCccCeeeccCcccCcC----CC---------CCCCCCCCCCEEEccCCCCC-CCCc---hhhhcCcccc
Q 044980 140 DC----WIYSLRHLFFIVLSYNQFQGK----IP---------STLGNLTSLKQIDLSHNQFN-FTSP---GWLSKLNELS 198 (313)
Q Consensus 140 ~~----~~~~l~~L~~L~L~~n~~~~~----~~---------~~~~~l~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~ 198 (313)
|. .+..-..|++|.+++|.+.-. +. +...+-|.|+.+....|++. |+.. ..+....+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 65 345556699999999987521 11 22345688999999999985 2211 2344456888
Q ss_pred cccccccccccc---cccccccccccCCCcCEEEccCCCCCCCcc----hhhhhhccccccCccEEEccccccccc----
Q 044980 199 SFLLNLVSCMVR---FHQLIPTSFIRLCKLTSIDFSSVKLSQDIS----QVLDIFSAYGTYALVSLILSHCQISAA---- 267 (313)
Q Consensus 199 ~~~L~l~~n~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~~~~~~L~~L~Ls~n~l~~~---- 267 (313)
. +.+..|-.+ +..++...+..+.+|++|++++|.++.... ..+..|+ .|+.|.+..|-++..
T Consensus 189 ~--vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-----~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 189 E--VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-----LLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred e--EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-----hhhhccccchhhccccHHH
Confidence 8 888777211 111233445677899999999999986443 3455566 789999999988754
Q ss_pred ----c--cCCCCCCEEEccCCccccccCccc-------cCCCCCCEeeCCCCcCcc
Q 044980 268 ----L--GKLSSLRNLDFSLNMLNGSIPLSL-------GQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 268 ----~--~~~~~L~~L~l~~n~l~~~ip~~l-------~~l~~L~~L~l~~n~l~~ 310 (313)
+ ...++|..|-..+|.+.+.+...+ ..+|-|..|.+.+|++..
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2 346789999999999876444321 346788889999998864
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=8.7e-10 Score=100.48 Aligned_cols=124 Identities=30% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchh-hccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSW-LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
+..++.+++..|.+.- +-..+..+..|..|++.+|.+ ..+.. +..+++|++|++++|.|+...+ +..+..|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i----~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKI----EKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK 143 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccch----hhcccchhhhhcchheeccccccccccc--hhhccchh
Confidence 4556666666666653 222356677888888888875 33444 6677888888888888876543 66677788
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCccccccccccccc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n 207 (313)
.|++++|.+. .+ ..+..+++|+.+++++|++...-+ . ...+..++. +.+.+|
T Consensus 144 ~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~--l~l~~n 196 (414)
T KOG0531|consen 144 ELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE--LDLGGN 196 (414)
T ss_pred hheeccCcch-hc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHH--HhccCC
Confidence 8888888877 22 234457788888888888774433 1 456667777 777766
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.6e-09 Score=68.43 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=40.3
Q ss_pred CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCC
Q 044980 124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (313)
+|++|++++|.+....+.++..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666655555666777777777777777655556667777777777777653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=7.2e-09 Score=67.51 Aligned_cols=56 Identities=38% Similarity=0.536 Sum_probs=46.8
Q ss_pred CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980 253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l 308 (313)
+|+.|++++|+++.. |..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678888888887654 77888999999999999866667888999999999999875
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=2.5e-08 Score=59.75 Aligned_cols=40 Identities=43% Similarity=0.853 Sum_probs=30.6
Q ss_pred HHhHHHHHHhhhhcc-cCCCCCCCCCCCC-CCCcccCceEec
Q 044980 18 ESERGALLKLKRNLK-DLSNCLASWNIGD-GDCCKWVGNFCN 57 (313)
Q Consensus 18 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~-~~~c~~~~v~c~ 57 (313)
+.|++||++||.++. +|...+.+|+... .++|+|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998 5778889999732 799999999995
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=3.2e-08 Score=97.02 Aligned_cols=108 Identities=21% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCCCcceecCCCCc--ccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcC
Q 044980 71 PFGYLKYSDAEDDD--HYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLR 147 (313)
Q Consensus 71 ~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 147 (313)
..++|++|-+..|. +.......|..++.|++|||++|. ..+.+| .++++-+|++|+++++.+. .+|..+.++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 44556666666664 222222335667777777777765 344555 5777777777777777776 3466677777
Q ss_pred ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCC
Q 044980 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ 182 (313)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (313)
+|.+|++..+.....+|.....+.+|++|.+..-.
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777777776554555555667777777776654
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=3e-09 Score=88.76 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC-cCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ-GKIPSTLGNLTSL 173 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L 173 (313)
.+++++++||.+|.++-+......+.+++.|++|+++.|.+...+...+..+.+|++|.|.+..+. ......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 467889999999987333222224667899999999999887665443345567888888887765 2344556678888
Q ss_pred CEEEccCCCCCCC-Cc-hhhhcC-cccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcc-hhhhhhccc
Q 044980 174 KQIDLSHNQFNFT-SP-GWLSKL-NELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAY 249 (313)
Q Consensus 174 ~~L~l~~n~l~~~-~p-~~~~~l-~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~ 249 (313)
+.|+++.|.+.-. +. .....+ +.+.. +....|.......+-.--.-++++..+.+..|.+..... +....++
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~t--lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p-- 224 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLT--LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP-- 224 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhh--hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC--
Confidence 8888888843210 00 000001 12223 333333110000000111123456667777776543221 1223333
Q ss_pred cccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCc------cccCCCCCCEeeCCCCcCcc
Q 044980 250 GTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPL------SLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 250 ~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~------~l~~l~~L~~L~l~~n~l~~ 310 (313)
.+..|+|+.+++.++ +..++.|+.|.+++|.+.+.+.. .++.+++++.|+=+ +++.
T Consensus 225 ---~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 225 ---SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred ---cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 677888999998877 78889999999999988753332 34667888887755 5543
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=1.9e-08 Score=98.63 Aligned_cols=153 Identities=23% Similarity=0.181 Sum_probs=106.2
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
...+...+.+|.+.. ++.. ..++.|++|-+..|..-........|..++.|.+||+++|.-.+..|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 345555555555542 2222 24567889988888510012222247789999999999988778889999999999999
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+++++.+. .+|..+.++++|.+|++..+.....+|.....+.+|++ +.+...........-..+.++.+|+.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~--L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV--LRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE--EEeeccccccchhhHHhhhcccchhhhee
Confidence 99999998 89999999999999999998876666777777899999 44433211222333344455555555554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=6.2e-09 Score=94.90 Aligned_cols=218 Identities=28% Similarity=0.279 Sum_probs=140.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.+++..|.+..... .+..+++|++|++++|.+ ..+..+..++.|+.|++++|.+.... .+..+..|+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I----~~i~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~ 165 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKI----TKLEGLSTLTLLKELNLSGNLISDIS--GLESLKSLK 165 (414)
T ss_pred cccceeeeeccccchhhccc-chhhhhcchheecccccc----ccccchhhccchhhheeccCcchhcc--CCccchhhh
Confidence 67889999999999886432 266789999999999997 44555777888999999999987642 255688899
Q ss_pred eeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC--CcCE
Q 044980 151 FIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC--KLTS 227 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~--~L~~ 227 (313)
.+++++|.+...-+ . ...+.+++.+++.+|.+...- .+..+..+.. +.+..| .+...- .+..+. +|+.
T Consensus 166 ~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~--~~l~~n--~i~~~~--~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIE--GLDLLKKLVL--LSLLDN--KISKLE--GLNELVMLHLRE 236 (414)
T ss_pred cccCCcchhhhhhh-hhhhhccchHHHhccCCchhccc--chHHHHHHHH--hhcccc--cceecc--CcccchhHHHHH
Confidence 99999999984333 2 467888999999999876322 1222233333 344444 211111 111112 3778
Q ss_pred EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc---ccCcc-ccCCCCCCEe
Q 044980 228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG---SIPLS-LGQISHLEYL 301 (313)
Q Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~---~ip~~-l~~l~~L~~L 301 (313)
+++++|.+... +..+..+. .+..+++..|++... +.....+..+....|.+.. ..... ....+.++.+
T Consensus 237 l~l~~n~i~~~-~~~~~~~~-----~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 237 LYLSGNRISRS-PEGLENLK-----NLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HhcccCccccc-cccccccc-----cccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 88888877643 13333444 677778877777665 5555666666666666552 11111 3445566777
Q ss_pred eCCCCcCcc
Q 044980 302 DLSNNKFVT 310 (313)
Q Consensus 302 ~l~~n~l~~ 310 (313)
.+.+|.+..
T Consensus 311 ~~~~~~~~~ 319 (414)
T KOG0531|consen 311 TLELNPIRK 319 (414)
T ss_pred ccccCcccc
Confidence 777666543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.1e-07 Score=79.52 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=127.6
Q ss_pred CCCCcEeeccCCCCCCCCCCchhhc-cCCCCCEEEcCCccCCC--CCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980 96 LSNLQYLDLSWIDCRLHVDSLSWLS-SLLLLEHIDLGQVHLGK--ASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS 172 (313)
Q Consensus 96 l~~L~~L~L~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 172 (313)
...+..|.+.++.+. ..+.+..++ .++.++.+|+.+|.++. .+...+.+++.|++|+++.|++...+...-....+
T Consensus 44 ~ra~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334445555555542 123333343 57899999999999974 33345678999999999999987443322235678
Q ss_pred CCEEEccCCCCC-CCCchhhhcCccccccccccccccccccccccc--ccccC-CCcCEEEccCCCCCCCcchhhhhhcc
Q 044980 173 LKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT--SFIRL-CKLTSIDFSSVKLSQDISQVLDIFSA 248 (313)
Q Consensus 173 L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~--~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (313)
|+.|.|++..+. ......+..++.+++ ++++.| +++....+ ..... +.++++.+..|...... ....+ .
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vte--lHmS~N--~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~--~~~~l-~ 195 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTE--LHMSDN--SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL--NKNKL-S 195 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhh--hhhccc--hhhhhccccccccccchhhhhhhcCCcHHHHHH--HHHhH-H
Confidence 999999998874 233345667888888 888887 22221110 01111 12333333322211000 00000 0
Q ss_pred ccccCccEEEccccccccc-----ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCcCcccc
Q 044980 249 YGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 249 ~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
.-++++..+.+..|.+... ...++.+..|+|+.|+|.. .--+.+.+++.|..|.+++|.+...+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 1133778888888876554 5667778889999998873 12235678899999999999887654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.7e-08 Score=93.56 Aligned_cols=128 Identities=26% Similarity=0.187 Sum_probs=83.8
Q ss_pred CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980 124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~ 203 (313)
.|.+.+.++|.+.. ...++.-++.|+.|+|+.|+++.. . .+..+++|++||+++|.+. .+|..-..-..|+. |.
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~--L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQL--LN 238 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhhee--ee
Confidence 45566666776643 244566677788888888888733 2 6677888888888888876 45542222234777 77
Q ss_pred ccccccccccccccccccCCCcCEEEccCCCCCCCc-chhhhhhccccccCccEEEcccccccc
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
+.+| .++. -..+.++.+|+.||+++|-+.+.- -..+..+. .|+.|+|.||.+-.
T Consensus 239 lrnN--~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs-----~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNN--ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-----SLIVLWLEGNPLCC 293 (1096)
T ss_pred eccc--HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-----HHHHHhhcCCcccc
Confidence 7777 2222 124567788888888888876531 12345555 68888888887653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.1e-08 Score=94.71 Aligned_cols=175 Identities=28% Similarity=0.302 Sum_probs=119.0
Q ss_pred hhccCCCCCEEEcCCccCCCCCchhhhhcCc-cCeeeccCcccC----------cCCCCCCCCCCCCCEEEccCCCCCCC
Q 044980 118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH-LFFIVLSYNQFQ----------GKIPSTLGNLTSLKQIDLSHNQFNFT 186 (313)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~ 186 (313)
.+..++.|+.|.+.++.+... ..+..+.. |++|... |.+. |.+...+. -..|...+.+.|.+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-h
Confidence 466778899999999887641 12333332 6665433 3221 12222221 134778888888887 4
Q ss_pred CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980 187 SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 187 ~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
+..++.-++.++. |++++| .+... +.+..+++|++||+++|.+... |. +.. ..+ +|+.|.+++|.++.
T Consensus 179 mD~SLqll~ale~--LnLshN--k~~~v--~~Lr~l~~LkhLDlsyN~L~~v-p~-l~~---~gc-~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 179 MDESLQLLPALES--LNLSHN--KFTKV--DNLRRLPKLKHLDLSYNCLRHV-PQ-LSM---VGC-KLQLLNLRNNALTT 246 (1096)
T ss_pred HHHHHHHHHHhhh--hccchh--hhhhh--HHHHhcccccccccccchhccc-cc-cch---hhh-hheeeeecccHHHh
Confidence 5567777888999 999998 43332 3677788999999999998743 32 111 112 69999999999988
Q ss_pred c--ccCCCCCCEEEccCCccccc-cCccccCCCCCCEeeCCCCcCc
Q 044980 267 A--LGKLSSLRNLDFSLNMLNGS-IPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 267 ~--~~~~~~L~~L~l~~n~l~~~-ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
. +.++++|+.||+++|-+.+- --..+..+..|+.|+|.||.+-
T Consensus 247 L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7 88899999999999988751 1112456778899999999874
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.8e-09 Score=85.75 Aligned_cols=176 Identities=23% Similarity=0.214 Sum_probs=103.3
Q ss_pred CCCEEEcCCccCCCC-CchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCC-CCCC-CchhhhcCcccccc
Q 044980 124 LLEHIDLGQVHLGKA-SDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ-FNFT-SPGWLSKLNELSSF 200 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~~ 200 (313)
.|+++|++...++.. ....+..+.+|+.|.+.++++...+...+..-.+|+.++++.+. ++.. ..-.+.+++.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~- 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE- 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh-
Confidence 477777777766532 12235666777777777777776666666667777777777765 3322 1124566777777
Q ss_pred ccccccccccccccccc-cccc-CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCCCC
Q 044980 201 LLNLVSCMVRFHQLIPT-SFIR-LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKLSS 273 (313)
Q Consensus 201 ~L~l~~n~~~~~~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~~~ 273 (313)
|+++.| .+....-. .+.. -.+|+.|+++++.-.-. -..+..+. ..++.|..||||.|. ++.. +.+++.
T Consensus 265 -LNlsWc--~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 265 -LNLSWC--FLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred -cCchHh--hccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcch
Confidence 777766 21111100 0111 13566777766542210 01111111 123488888888775 3333 777888
Q ss_pred CCEEEccCCccccccCc---cccCCCCCCEeeCCCCc
Q 044980 274 LRNLDFSLNMLNGSIPL---SLGQISHLEYLDLSNNK 307 (313)
Q Consensus 274 L~~L~l~~n~l~~~ip~---~l~~l~~L~~L~l~~n~ 307 (313)
|++|.++.|... +|. .+...|.|.+||+.++-
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 899988888642 444 45667889999988763
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.4e-08 Score=82.60 Aligned_cols=177 Identities=26% Similarity=0.209 Sum_probs=118.6
Q ss_pred CCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCCCCCCC
Q 044980 97 SNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLGNLTSL 173 (313)
Q Consensus 97 ~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~l~~L 173 (313)
+.|++|||++..+ ....+. -++.|.+|+.+.+.++++.+.+...++.-.+|+.++++.+. ++. .....+.+++.|
T Consensus 185 sRlq~lDLS~s~i--t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI--TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhhe--eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4688889887765 222222 46778899999999999988887778888889999998763 331 112335678889
Q ss_pred CEEEccCCCCCCCCchh-hhc-Ccccccccccccccccccccc-cccccccCCCcCEEEccCCC-CCCCcchhhhhhccc
Q 044980 174 KQIDLSHNQFNFTSPGW-LSK-LNELSSFLLNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVK-LSQDISQVLDIFSAY 249 (313)
Q Consensus 174 ~~L~l~~n~l~~~~p~~-~~~-l~~L~~~~L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~ 249 (313)
..|+++-|.+....-.. +.. -++|.. |+++++-..+... +.--...++++.+||+++|. +.......+..++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~--LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-- 338 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQ--LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-- 338 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhh--hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc--
Confidence 99999988875433221 111 256667 7777762222111 12223557789999998775 4444445566666
Q ss_pred cccCccEEEccccccccc-----ccCCCCCCEEEccCC
Q 044980 250 GTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLN 282 (313)
Q Consensus 250 ~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n 282 (313)
.|++|.++.|..-.. +...+.|.+||+-++
T Consensus 339 ---~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 ---YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ---hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 899999999874333 778889999998764
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.3e-06 Score=52.44 Aligned_cols=38 Identities=37% Similarity=0.577 Sum_probs=29.1
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 272 ~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46888888888888 677778888888888888888763
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=1.6e-06 Score=71.92 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=122.3
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCchh----hccCCCCCEEEcCCccCC---CCCch-------hhhhcCccCeeeccCcc
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLSW----LSSLLLLEHIDLGQVHLG---KASDC-------WIYSLRHLFFIVLSYNQ 158 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~~----~~~l~~L~~L~l~~n~l~---~~~~~-------~~~~l~~L~~L~L~~n~ 158 (313)
+.-+..+++++|++|-+ ......+ +.+-.+|+..+++.-... ..+++ .+..+++|+..+|+.|-
T Consensus 26 l~~~d~~~evdLSGNti--gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTI--GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcc--cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 44478899999999986 2222223 445678888888764332 22222 24567889999999999
Q ss_pred cCcCCCCC----CCCCCCCCEEEccCCCCCCCCchhhh-------------cCccccccccccccccccccc----cccc
Q 044980 159 FQGKIPST----LGNLTSLKQIDLSHNQFNFTSPGWLS-------------KLNELSSFLLNLVSCMVRFHQ----LIPT 217 (313)
Q Consensus 159 ~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~~-------------~l~~L~~~~L~l~~n~~~~~~----~~~~ 217 (313)
|....|+. +..-+.|++|.|++|.+...--.-++ +-+.|+. +....| ++.. ....
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~--vicgrN--Rlengs~~~~a~ 179 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV--VICGRN--RLENGSKELSAA 179 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE--EEeccc--hhccCcHHHHHH
Confidence 88766653 35667899999999987522111111 2244444 444443 1111 0111
Q ss_pred ccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccccccC
Q 044980 218 SFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGSIP 289 (313)
Q Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~ip 289 (313)
.+.....|+++.+..|.|.-.....+.......+.+|+.|||+.|-++-. +...+.|++|.+..|.++....
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 23333567777777777664333333222222233677777777776533 4445557777777777664333
Q ss_pred cccc------CCCCCCEeeCCCCcCccc
Q 044980 290 LSLG------QISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 290 ~~l~------~l~~L~~L~l~~n~l~~~ 311 (313)
.++- ..|+|..|-..+|...|.
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCc
Confidence 3221 246677777777766653
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=6.2e-07 Score=66.75 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=57.8
Q ss_pred cceecCCCCcccccccc---cccCCCCCcEeeccCCCCCCCCCCch-hhc-cCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 75 LKYSDAEDDDHYMRSKL---VVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-SLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
+..++++++.+.. +++ .+....+|+..+|++|.+ ..+| .|. +++.++++++.+|.++.. |..+..++.|
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPAL 102 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHh
Confidence 4455555555431 222 233445666667776664 3333 232 345666666666666654 4446666666
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (313)
+.|+++.|++. ..|..+..+.++..|+..+|.+.
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 66666666666 55555555666666666666554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=6.3e-07 Score=66.72 Aligned_cols=81 Identities=27% Similarity=0.334 Sum_probs=37.3
Q ss_pred cCeeeccCcccCcCCCCC---CCCCCCCCEEEccCCCCCCCCchhh-hcCcccccccccccccccccccccccccccCCC
Q 044980 149 LFFIVLSYNQFQGKIPST---LGNLTSLKQIDLSHNQFNFTSPGWL-SKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCK 224 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~ 224 (313)
+..++|+.|++. .++.. +.....|+..++++|.+.. +|..| ...+.++. +++++| .+. .+|..+..++.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~--lNl~~n--eis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATT--LNLANN--EIS-DVPEELAAMPA 101 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhh--hhcchh--hhh-hchHHHhhhHH
Confidence 455666666554 22322 2233445556666666653 33322 22334444 444444 222 14444444445
Q ss_pred cCEEEccCCCCC
Q 044980 225 LTSIDFSSVKLS 236 (313)
Q Consensus 225 L~~L~l~~n~l~ 236 (313)
|+.|+++.|.+.
T Consensus 102 Lr~lNl~~N~l~ 113 (177)
T KOG4579|consen 102 LRSLNLRFNPLN 113 (177)
T ss_pred hhhcccccCccc
Confidence 555555554444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.6e-05 Score=47.61 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=19.1
Q ss_pred ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184 (313)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (313)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555666666666666554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00014 Score=57.92 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCc--CCCCCCCCCCCCCE
Q 044980 98 NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG--KIPSTLGNLTSLKQ 175 (313)
Q Consensus 98 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~ 175 (313)
....+||++|.+ ..++.|..++.|.+|.+.+|+|+..-|.--..+++|..|.+.+|.+.. .+ ..+..+|+|++
T Consensus 43 ~~d~iDLtdNdl----~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDL----RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEY 117 (233)
T ss_pred ccceecccccch----hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccce
Confidence 445667777664 334446666777777777777766655544455667777777776651 11 12345667777
Q ss_pred EEccCCCCC
Q 044980 176 IDLSHNQFN 184 (313)
Q Consensus 176 L~l~~n~l~ 184 (313)
|.+-+|..+
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 777776654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.8e-05 Score=73.87 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=78.2
Q ss_pred CccCeeeccCcccC-cCCCCCCC-CCCCCCEEEccCCCCC-CCCchhhhcCcccccccccccccccccccccccccccCC
Q 044980 147 RHLFFIVLSYNQFQ-GKIPSTLG-NLTSLKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC 223 (313)
Q Consensus 147 ~~L~~L~L~~n~~~-~~~~~~~~-~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~ 223 (313)
.+|++|++++...- ...|..++ .+|.|+.|.+.+-.+. ..+.....++++|.. |++++. ++..+ ..++.++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~s--LDIS~T--nI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRS--LDISGT--NISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccce--eecCCC--CccCc--HHHhccc
Confidence 34888888775432 22233333 4688888888876653 233445566777777 777775 33322 4566777
Q ss_pred CcCEEEccCCCCCC-CcchhhhhhccccccCccEEEccccccccc----------ccCCCCCCEEEccCCccccccCc
Q 044980 224 KLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQISAA----------LGKLSSLRNLDFSLNMLNGSIPL 290 (313)
Q Consensus 224 ~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~L~~L~l~~n~l~~~ip~ 290 (313)
+|++|.+.+=.+.. ..-..+..+. +|+.||+|....... -..+|.|+.||.|++.+.+.+-+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhccc-----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 77777776666553 2223445555 777777776554332 33466777777777666654433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00063 Score=60.96 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=79.5
Q ss_pred hccCCCCCEEEcCCccCCCCCchhhhhcC-ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLR-HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL 197 (313)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 197 (313)
+..+.+++.|++++|.+... | .++ +|++|.++++.--..+|..+ .++|++|++++|.....+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 55578899999999977654 3 233 49999998854433666554 35799999999843335554 35
Q ss_pred ccccccccccccccccccccccccCCCcCEEEccCCCCC--CCcchhhhhhccccccCccEEEccccccccccc-CCCCC
Q 044980 198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS--QDISQVLDIFSAYGTYALVSLILSHCQISAALG-KLSSL 274 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~L 274 (313)
+. |.+..+...--..+|. +|+.|.+.+++.. ..+|. .+| ++|+.|++++|....... -..+|
T Consensus 115 e~--L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LP----sSLk~L~Is~c~~i~LP~~LP~SL 179 (426)
T PRK15386 115 RS--LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LIS----PSLKTLSLTGCSNIILPEKLPESL 179 (426)
T ss_pred ce--EEeCCCCCcccccCcc------hHhheecccccccccccccc---ccC----CcccEEEecCCCcccCcccccccC
Confidence 55 4444431111122443 4666666433211 11111 122 178888888877543322 22478
Q ss_pred CEEEccCC
Q 044980 275 RNLDFSLN 282 (313)
Q Consensus 275 ~~L~l~~n 282 (313)
+.|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888776
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=7.7e-05 Score=71.81 Aligned_cols=151 Identities=21% Similarity=0.164 Sum_probs=98.3
Q ss_pred CCCCEEEcCCccC-CCCCchhh-hhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccc
Q 044980 123 LLLEHIDLGQVHL-GKASDCWI-YSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS 199 (313)
Q Consensus 123 ~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 199 (313)
.+|++|++++... ....|..+ ..+|.|+.|.+++-.+.. .+.....++|+|..||+++..++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6899999988643 33333323 357889999999877652 2334456789999999999998744 56888999998
Q ss_pred ccccccccccccccccccccccCCCcCEEEccCCCCCCCc--chhhhhhccccccCccEEEccccccccc-----ccCCC
Q 044980 200 FLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI--SQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLS 272 (313)
Q Consensus 200 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~ 272 (313)
|.+.+= .-.....-..+.++++|++||+|........ ....-... ...|.|+.||.|+..+... +..-+
T Consensus 200 --L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~-~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 200 --LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG-MVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred --HhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc-ccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 665442 0001112235677899999999988765432 22111111 1244999999999888876 33345
Q ss_pred CCCEEEc
Q 044980 273 SLRNLDF 279 (313)
Q Consensus 273 ~L~~L~l 279 (313)
+|+.+-.
T Consensus 276 ~L~~i~~ 282 (699)
T KOG3665|consen 276 NLQQIAA 282 (699)
T ss_pred cHhhhhh
Confidence 5554443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00061 Score=54.43 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCcccc---ccCcccc
Q 044980 222 LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNG---SIPLSLG 293 (313)
Q Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~---~ip~~l~ 293 (313)
+..|.+|.+.+|.|+..-|..-..++ +|..|.|.+|.+... +..+++|++|.+-+|.+.. .---.+.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred ccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 34556666666666544333333333 566666666655433 5556666666666666552 1111345
Q ss_pred CCCCCCEeeCC
Q 044980 294 QISHLEYLDLS 304 (313)
Q Consensus 294 ~l~~L~~L~l~ 304 (313)
.+|+|+.||+.
T Consensus 138 klp~l~~LDF~ 148 (233)
T KOG1644|consen 138 KLPSLRTLDFQ 148 (233)
T ss_pred ecCcceEeehh
Confidence 56666666654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=4.9e-05 Score=63.50 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCc-hhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASD-CWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 150 (313)
+.+.+.|++-++.+..+ . ...+++.|++|.|+-|++ ..+..+..|++|++|+|..|.|...-. .++.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkI----ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKI----SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH-H-HHHhcccceeEEeecccc----ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 33455555555555432 1 133566666666666664 233345566666666666666644211 1445556666
Q ss_pred eeeccCcccCcCCCC-----CCCCCCCCCEEE
Q 044980 151 FIVLSYNQFQGKIPS-----TLGNLTSLKQID 177 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~-----~~~~l~~L~~L~ 177 (313)
.|.|..|+=.|.-+. .+.-+|+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666654443332 223345555553
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00057 Score=56.63 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=33.5
Q ss_pred hccCCCCCEEEcCCc--cCCCCCchhhhhcCccCeeeccCcccCcCCCC---CCCCCCCCCEEEccCCCCC
Q 044980 119 LSSLLLLEHIDLGQV--HLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS---TLGNLTSLKQIDLSHNQFN 184 (313)
Q Consensus 119 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~ 184 (313)
+..+++|+.|.++.| ++.+..+.....+++|+++++++|++.. +. .+..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 444556666666666 4443333334444666666666666551 11 1234455666666666544
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=2.4e-05 Score=65.26 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=59.9
Q ss_pred CEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCch
Q 044980 62 HILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC 141 (313)
Q Consensus 62 ~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 141 (313)
.+.+|++-.+|+.|++|.|+-|.++..-| +..|+.|++|.|..|.|.. ..++.-+.+++.|+.|.|..|+-.+..+.
T Consensus 30 ~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 30 GLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred CccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence 34444444478888888888888875433 6678888888888887611 12233577788888888888877655432
Q ss_pred -----hhhhcCccCeee
Q 044980 142 -----WIYSLRHLFFIV 153 (313)
Q Consensus 142 -----~~~~l~~L~~L~ 153 (313)
.+..+++|+.|+
T Consensus 107 nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 107 NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHcccchhcc
Confidence 355677777775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00067 Score=56.24 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=29.1
Q ss_pred hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCC--CCCCCCchhhhcCccccccccccccc
Q 044980 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN--QFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 145 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
.+..|+.+.+.+..++. + ..+..+++|++|.++.| ++.+.++.....+++|++ +.+++|
T Consensus 41 ~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~--l~ls~N 101 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV--LNLSGN 101 (260)
T ss_pred cccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeE--EeecCC
Confidence 34445566665555541 1 23445667777777777 344333333333344444 444444
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.86 E-value=0.0042 Score=55.80 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=80.9
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS 172 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 172 (313)
+..+.+++.|++++|.+ ..+|.+ ...|++|.++++.--...|..+ ..+|++|.+++|.....+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L----~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDI----ESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCC----cccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------c
Confidence 55678999999999975 333422 2469999998754434445433 24699999999843224554 4
Q ss_pred CCEEEccCCCCC--CCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcccc
Q 044980 173 LKQIDLSHNQFN--FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG 250 (313)
Q Consensus 173 L~~L~l~~n~l~--~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (313)
|+.|++..+... +.+|. +|+. |.+.++.......+|.. -..+|++|++++|.... .|+.+. .
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~--L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~--- 177 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTS--LSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--E--- 177 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhh--eeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--c---
Confidence 777777766542 34444 3445 44432210000001110 11479999998887552 233222 1
Q ss_pred ccCccEEEccccc
Q 044980 251 TYALVSLILSHCQ 263 (313)
Q Consensus 251 ~~~L~~L~Ls~n~ 263 (313)
+|+.|.++.+.
T Consensus 178 --SLk~L~ls~n~ 188 (426)
T PRK15386 178 --SLQSITLHIEQ 188 (426)
T ss_pred --cCcEEEecccc
Confidence 78888887663
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.32 E-value=0.00015 Score=63.78 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=7.0
Q ss_pred CCCcCEEEccCCC
Q 044980 222 LCKLTSIDFSSVK 234 (313)
Q Consensus 222 ~~~L~~L~l~~n~ 234 (313)
..+|+.+.+..+.
T Consensus 319 ~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 319 CHNLQVLELSGCQ 331 (483)
T ss_pred CCceEEEeccccc
Confidence 3455555555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.26 E-value=0.007 Score=45.32 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=29.8
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCC
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNL 170 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 170 (313)
|.++++|+.+.+... + ..++ .|..++.|+.+.+..+ +.......+..+.+++.+.+.+ .+...-...|..+
T Consensus 8 F~~~~~l~~i~~~~~-~----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-I----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECCC-e----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 445555555555432 1 1121 3445555555555543 3322222344454555555543 2221222334445
Q ss_pred CCCCEEEccC
Q 044980 171 TSLKQIDLSH 180 (313)
Q Consensus 171 ~~L~~L~l~~ 180 (313)
++|+.+++..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5555555543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.22 E-value=0.0022 Score=31.99 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=17.2
Q ss_pred CCCEEEccCCccccccCccccC
Q 044980 273 SLRNLDFSLNMLNGSIPLSLGQ 294 (313)
Q Consensus 273 ~L~~L~l~~n~l~~~ip~~l~~ 294 (313)
+|++||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788999999998 88887654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.04 E-value=0.016 Score=43.37 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980 118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL 197 (313)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 197 (313)
.|.++.+|+.+.+.. .+.......+..+.+|+.+.+..+ +...-...|.++++++.+.+.+ .+.......+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 366677788887764 344443445677777888887764 4433345566676788887765 3322223345566777
Q ss_pred ccccccccccccccccccccccccCCCcCEEEccC
Q 044980 198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
+. +.+..+ +..+-...+.+. +++.+.+..
T Consensus 84 ~~--i~~~~~---~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KN--IDIPSN---ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CE--EEETTT----BEEHTTTTTT--T--EEE-TT
T ss_pred cc--cccCcc---ccEEchhhhcCC-CceEEEECC
Confidence 76 555443 222233344444 666666543
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.04 E-value=9e-05 Score=68.31 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=49.9
Q ss_pred CcEeeccCCCCCCCCCCch----hhccCCCCCEEEcCCccCCCCCchhhhh----c-CccCeeeccCcccCcC----CCC
Q 044980 99 LQYLDLSWIDCRLHVDSLS----WLSSLLLLEHIDLGQVHLGKASDCWIYS----L-RHLFFIVLSYNQFQGK----IPS 165 (313)
Q Consensus 99 L~~L~L~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~L~~n~~~~~----~~~ 165 (313)
+..+.|.+|.+ ...... .+.....|+.|++++|.+.+.....+.. . ..+++|.+..|.++.. +..
T Consensus 89 l~~L~L~~~~l--~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRL--GDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCcc--ccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 77788888876 333332 3556778888888888887544332221 1 2256666666666532 333
Q ss_pred CCCCCCCCCEEEccCCCC
Q 044980 166 TLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n~l 183 (313)
.+.....++.++++.|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 444556677777777765
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.002 Score=59.80 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCCCcceecCCCCccccc--ccccccCCCCCcEeeccCCCCCCCCCC---chhhccCCCCCEEEcCCcc-CCCCCchhhh
Q 044980 71 PFGYLKYSDAEDDDHYMR--SKLVVGNLSNLQYLDLSWIDCRLHVDS---LSWLSSLLLLEHIDLGQVH-LGKASDCWIY 144 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 144 (313)
..+.|+.+.+..+.-... +......+++|++|+++.+........ ......+++|+.++++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776543322 233455678888888876311001111 1123446788888888877 5555444444
Q ss_pred h-cCccCeeeccCcc-cCcC-CCCCCCCCCCCCEEEccCCCC
Q 044980 145 S-LRHLFFIVLSYNQ-FQGK-IPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 145 ~-l~~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l 183 (313)
. +++|++|.+.++. ++.. +-.....++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3 6778888877666 3421 112234567788888888775
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.71 E-value=0.00019 Score=66.20 Aligned_cols=188 Identities=21% Similarity=0.142 Sum_probs=101.3
Q ss_pred cceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCCch----hhccC-CCCCEEEcCCccCCCCCch----
Q 044980 75 LKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDSLS----WLSSL-LLLEHIDLGQVHLGKASDC---- 141 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~~~~~---- 141 (313)
+..+.+.+|.+..... ..+....+|..|+++.|.+. ..... .+... ..+++|++..+.++.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~--~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG--DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc--cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 7778888888765533 34556788999999999862 22222 23333 5677788888887765433
Q ss_pred hhhhcCccCeeeccCcccCc----CCCCCCC----CCCCCCEEEccCCCCCCCCc----hhhhcCcc-cccccccccccc
Q 044980 142 WIYSLRHLFFIVLSYNQFQG----KIPSTLG----NLTSLKQIDLSHNQFNFTSP----GWLSKLNE-LSSFLLNLVSCM 208 (313)
Q Consensus 142 ~~~~l~~L~~L~L~~n~~~~----~~~~~~~----~l~~L~~L~l~~n~l~~~~p----~~~~~l~~-L~~~~L~l~~n~ 208 (313)
.+.....+++++++.|.+.. .++..+. ...++++|.+.+|.++.... ..+...+. +.+ +++..|.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e--l~l~~n~ 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE--LDLASNK 244 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH--HHHHhcC
Confidence 33345558888898888741 1223333 35678888888888763211 12223333 444 5555552
Q ss_pred ccc--ccccccccccC-CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980 209 VRF--HQLIPTSFIRL-CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267 (313)
Q Consensus 209 ~~~--~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 267 (313)
..- ...+...+..+ ..+++++++.|.+.......+..... .++.++.+.++.|.+...
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~-~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLV-SCRQLEELSLSNNPLTDY 305 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHh-hhHHHHHhhcccCccccH
Confidence 110 01122223333 34556666666665443333322221 111555555555555443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.011 Score=29.37 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=8.5
Q ss_pred cCeeeccCcccCcCCCCCC
Q 044980 149 LFFIVLSYNQFQGKIPSTL 167 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~ 167 (313)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.65 E-value=0.023 Score=26.27 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=5.3
Q ss_pred CCCEEEccCCccc
Q 044980 273 SLRNLDFSLNMLN 285 (313)
Q Consensus 273 ~L~~L~l~~n~l~ 285 (313)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.28 E-value=0.0026 Score=56.33 Aligned_cols=200 Identities=21% Similarity=0.140 Sum_probs=103.1
Q ss_pred CCcceecCCCCccccccc--ccccCCCCCcEeeccCCCCCCCCCCchhh-ccCCCCCEEEcCCc-cCCCCCch-hhhhcC
Q 044980 73 GYLKYSDAEDDDHYMRSK--LVVGNLSNLQYLDLSWIDCRLHVDSLSWL-SSLLLLEHIDLGQV-HLGKASDC-WIYSLR 147 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~ 147 (313)
..|+.|.+.+..-.+.-+ ....+++++++|.+.++.. ......-.+ ..+++|+++++..+ .++...-. ....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~-iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK-ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhccee-ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 456677776655433322 2345788888888887762 222222233 35788999988874 34433322 234677
Q ss_pred ccCeeeccCcc-cCcC-CCCCCCCCCCCCEEEccCCCCCCCCchhhh----cCcccccccccccccccccccc-cccccc
Q 044980 148 HLFFIVLSYNQ-FQGK-IPSTLGNLTSLKQIDLSHNQFNFTSPGWLS----KLNELSSFLLNLVSCMVRFHQL-IPTSFI 220 (313)
Q Consensus 148 ~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~~L~~~~L~l~~n~~~~~~~-~~~~~~ 220 (313)
+|++++++.+. +++. +.....+++.++.+.+.+|.-.+ -..+. .+..+.+ +++..+. .++.. +...-.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~--lnl~~c~-~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILK--LNLQHCN-QLTDEDLWLIAC 291 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhc--cchhhhc-cccchHHHHHhh
Confidence 89999998875 3331 11223355566677666654211 11121 1223333 4443441 11111 222223
Q ss_pred cCCCcCEEEccCCCCCC-CcchhhhhhccccccCccEEEccccc-cccc-----ccCCCCCCEEEccCC
Q 044980 221 RLCKLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQ-ISAA-----LGKLSSLRNLDFSLN 282 (313)
Q Consensus 221 ~~~~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~-----~~~~~~L~~L~l~~n 282 (313)
.+.+|+.++.+++.-.+ .+-..++. ++.+|+.+-+++|+ ++.. -.+.+.|+.+++..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~----~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQ----HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhc----CCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 45678888887765432 22222322 23378888887776 3222 223345555555544
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=0.033 Score=44.71 Aligned_cols=28 Identities=43% Similarity=0.565 Sum_probs=13.7
Q ss_pred CccEEEccccc-cccc----ccCCCCCCEEEcc
Q 044980 253 ALVSLILSHCQ-ISAA----LGKLSSLRNLDFS 280 (313)
Q Consensus 253 ~L~~L~Ls~n~-l~~~----~~~~~~L~~L~l~ 280 (313)
+|+.|++++|. ||+. +..+++|+.|.+.
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 55555555543 4433 4444555544444
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=0.058 Score=43.39 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=46.0
Q ss_pred cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhcc-CCCCCEEEcCCc-cCCCCCchhhhhcCccCee
Q 044980 75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSS-LLLLEHIDLGQV-HLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 152 (313)
++.+|.++..+...--+.+.+++.++.|.+.+|.- .....+..+++ .++|+.|++++| +|+...-.++..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~-~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY-FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccc-hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 44555555666655555566677777777776652 01111222222 467777777755 5665555556666666666
Q ss_pred eccC
Q 044980 153 VLSY 156 (313)
Q Consensus 153 ~L~~ 156 (313)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.06 E-value=0.27 Score=25.25 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCccccccCcc
Q 044980 271 LSSLRNLDFSLNMLNGSIPLS 291 (313)
Q Consensus 271 ~~~L~~L~l~~n~l~~~ip~~ 291 (313)
+++|+.|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356888888888888 66654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.06 E-value=0.27 Score=25.25 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCccccccCcc
Q 044980 271 LSSLRNLDFSLNMLNGSIPLS 291 (313)
Q Consensus 271 ~~~L~~L~l~~n~l~~~ip~~ 291 (313)
+++|+.|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356888888888888 66654
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.98 E-value=0.095 Score=48.60 Aligned_cols=59 Identities=29% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCcCEEEccCCC-CCCCcchhhhhhccccccCccEEEccccc-cccc-----ccCCCCCCEEEccCCcc
Q 044980 222 LCKLTSIDFSSVK-LSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA-----LGKLSSLRNLDFSLNML 284 (313)
Q Consensus 222 ~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~-----~~~~~~L~~L~l~~n~l 284 (313)
+.+|+.++++++. +++..-..+... ++.|+.|.+.+|. +++. ...++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~----c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASR----CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhh----CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3556666666665 443333333321 2267777766665 4544 44566677777776654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.75 E-value=0.1 Score=26.33 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.2
Q ss_pred CCCCEEEcCCccCCCC
Q 044980 123 LLLEHIDLGQVHLGKA 138 (313)
Q Consensus 123 ~~L~~L~l~~n~l~~~ 138 (313)
++|++|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.58 E-value=0.033 Score=45.80 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=62.0
Q ss_pred cccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCC
Q 044980 219 FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQI 295 (313)
Q Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l 295 (313)
+......+.||++.|.+.. ....+..+. .+..|+++.|++.-. ++....++.+++..|.++ ..|-++...
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t-----~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILT-----RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHH-----HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 4445677888888887653 234455566 788888888875433 666667788888888888 788888899
Q ss_pred CCCCEeeCCCCcCc
Q 044980 296 SHLEYLDLSNNKFV 309 (313)
Q Consensus 296 ~~L~~L~l~~n~l~ 309 (313)
+++++++.-+|.++
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 99999888888764
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=85.66 E-value=6.3 Score=36.19 Aligned_cols=107 Identities=18% Similarity=0.044 Sum_probs=52.0
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhc---cCCCCCEEEcCCccCCCCCchhhhhcCc-
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLS---SLLLLEHIDLGQVHLGKASDCWIYSLRH- 148 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~- 148 (313)
+.+++++++.|.+...+|..+..=. --++++.|.. ..+.+..+. .=..+.+++++.|.....+|.....+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~l--sskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCEL--SSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--Cccchhhhhh--hhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 4456666666666655554432200 0144444443 222221111 1135778888888887777664433322
Q ss_pred --cCeeeccCcccCc---CCCCCCCCCCCCCEEEccCCCC
Q 044980 149 --LFFIVLSYNQFQG---KIPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 149 --L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~l~~n~l 183 (313)
+++++.+...+.- .-+-..+.-++++..+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 6666666655431 1112223334566666665544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.55 E-value=1 Score=23.26 Aligned_cols=18 Identities=44% Similarity=0.608 Sum_probs=13.6
Q ss_pred CCCCEEEccCCccccccCc
Q 044980 272 SSLRNLDFSLNMLNGSIPL 290 (313)
Q Consensus 272 ~~L~~L~l~~n~l~~~ip~ 290 (313)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888887 6665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.83 E-value=2 Score=22.20 Aligned_cols=13 Identities=62% Similarity=0.800 Sum_probs=7.0
Q ss_pred CCCCEeeCCCCcC
Q 044980 296 SHLEYLDLSNNKF 308 (313)
Q Consensus 296 ~~L~~L~l~~n~l 308 (313)
.+|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555555
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.07 E-value=0.072 Score=43.91 Aligned_cols=85 Identities=18% Similarity=0.083 Sum_probs=48.3
Q ss_pred CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 174 (313)
.....+.||++.|.+ ...-..|..++.|..++++.|.+... |..++....+..+.+..|..+ ..|.+++..+.++
T Consensus 40 ~~kr~tvld~~s~r~---vn~~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL---VNLGKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred ccceeeeehhhhhHH---HhhccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555543 11101233445555566666655432 444556666666777766666 6677777777777
Q ss_pred EEEccCCCCC
Q 044980 175 QIDLSHNQFN 184 (313)
Q Consensus 175 ~L~l~~n~l~ 184 (313)
++++-++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777654
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.80 E-value=1.7 Score=22.87 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=9.3
Q ss_pred CCCCEEEcCCccCCCC
Q 044980 123 LLLEHIDLGQVHLGKA 138 (313)
Q Consensus 123 ~~L~~L~l~~n~l~~~ 138 (313)
++|++|++++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 3566666666666543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.38 E-value=2.4 Score=39.54 Aligned_cols=60 Identities=30% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCCcCEEEccCCCCCCC--cchhhhhhccccccCccEEEcccc--ccccc--cc--CCCCCCEEEccCCcccc
Q 044980 222 LCKLTSIDFSSVKLSQD--ISQVLDIFSAYGTYALVSLILSHC--QISAA--LG--KLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 222 ~~~L~~L~l~~n~l~~~--~~~~l~~~~~~~~~~L~~L~Ls~n--~l~~~--~~--~~~~L~~L~l~~n~l~~ 286 (313)
.+.+..+++++|++... +...-...+ +|+.|+|++| .+... +. +...|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~ap-----klk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAP-----KLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcc-----hhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34566677777776532 112222333 7777777777 34333 22 22346777777777653
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.23 E-value=4.3 Score=37.96 Aligned_cols=62 Identities=21% Similarity=0.067 Sum_probs=26.6
Q ss_pred CCCCcEeeccCCCCCCCCCCchh-hccCCCCCEEEcCCc--cCCCCCchhhhhc--CccCeeeccCcccC
Q 044980 96 LSNLQYLDLSWIDCRLHVDSLSW-LSSLLLLEHIDLGQV--HLGKASDCWIYSL--RHLFFIVLSYNQFQ 160 (313)
Q Consensus 96 l~~L~~L~L~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~~~l--~~L~~L~L~~n~~~ 160 (313)
.+.+..++|++|.+..... +.. -...++|++|+|++| .+... .++.++ ..|++|.+.+|++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDA-LSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhhchhh-hhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 3455555555555421111 111 112355666666665 22211 112222 22556666666554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.26 E-value=13 Score=18.78 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=9.9
Q ss_pred CCCCCEeeCCCCc
Q 044980 295 ISHLEYLDLSNNK 307 (313)
Q Consensus 295 l~~L~~L~l~~n~ 307 (313)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888875
Done!