Query 044980
Match_columns 313
No_of_seqs 228 out of 3113
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-41 5.3E-46 296.9 18.9 270 14-310 1-282 (313)
2 3rgz_A Protein brassinosteroid 100.0 4.5E-38 1.5E-42 306.0 20.3 278 11-309 4-331 (768)
3 4eco_A Uncharacterized protein 100.0 7.7E-36 2.6E-40 284.4 14.0 259 17-293 28-423 (636)
4 4fcg_A Uncharacterized protein 100.0 5.7E-35 2E-39 256.8 10.2 273 16-309 24-314 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 6.9E-34 2.4E-38 276.8 15.2 278 14-310 264-687 (876)
6 3rgz_A Protein brassinosteroid 100.0 7E-32 2.4E-36 262.4 21.1 230 71-312 416-720 (768)
7 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-31 8.1E-36 232.3 10.3 225 71-310 74-306 (313)
8 2z66_A Variable lymphocyte rec 100.0 3.7E-30 1.3E-34 223.9 15.1 252 47-311 5-263 (306)
9 3v47_A TOLL-like receptor 5B a 100.0 3.1E-29 1E-33 229.7 21.4 117 187-312 291-411 (455)
10 2z80_A TOLL-like receptor 2, v 100.0 4.5E-29 1.5E-33 221.5 17.5 255 40-311 22-316 (353)
11 2id5_A Lingo-1, leucine rich r 100.0 6.9E-28 2.4E-32 222.2 21.1 227 71-310 54-310 (477)
12 3o6n_A APL1; leucine-rich repe 100.0 9.2E-28 3.1E-32 215.8 19.1 225 71-310 67-332 (390)
13 3oja_B Anopheles plasmodium-re 100.0 1.2E-27 4.1E-32 226.5 20.4 224 71-310 73-338 (597)
14 3v47_A TOLL-like receptor 5B a 100.0 1E-27 3.5E-32 219.6 17.3 230 71-310 52-385 (455)
15 3zyi_A Leucine-rich repeat-con 99.9 6.2E-27 2.1E-31 214.4 18.8 244 51-310 56-304 (452)
16 3t6q_A CD180 antigen; protein- 99.9 1.1E-26 3.8E-31 220.2 20.2 227 71-310 276-514 (606)
17 1xku_A Decorin; proteoglycan, 99.9 5.2E-26 1.8E-30 199.8 22.9 244 47-308 29-305 (330)
18 4eco_A Uncharacterized protein 99.9 5E-28 1.7E-32 230.5 10.4 275 18-311 26-417 (636)
19 2id5_A Lingo-1, leucine rich r 99.9 5.9E-27 2E-31 215.9 17.1 229 71-311 78-335 (477)
20 3zyj_A Leucine-rich repeat-con 99.9 1.3E-26 4.6E-31 211.5 19.0 244 51-310 45-293 (440)
21 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 8E-31 197.9 18.3 202 72-285 31-238 (285)
22 3t6q_A CD180 antigen; protein- 99.9 2E-26 7E-31 218.4 19.5 227 71-310 299-537 (606)
23 2ft3_A Biglycan; proteoglycan, 99.9 1E-25 3.4E-30 198.2 21.5 243 48-309 32-307 (332)
24 4fcg_A Uncharacterized protein 99.9 2.2E-26 7.6E-31 202.0 16.7 201 95-312 79-293 (328)
25 1xku_A Decorin; proteoglycan, 99.9 4.6E-26 1.6E-30 200.2 18.3 221 72-311 51-278 (330)
26 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-26 3.9E-31 217.6 15.3 181 48-237 3-210 (549)
27 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-25 4.2E-30 193.4 19.9 215 82-311 20-240 (285)
28 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-26 1.7E-30 212.0 18.3 223 71-310 43-413 (520)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-25 4.9E-30 215.3 22.0 225 71-305 47-305 (680)
30 2ft3_A Biglycan; proteoglycan, 99.9 6E-26 2E-30 199.6 16.6 220 72-311 53-279 (332)
31 1wwl_A Monocyte differentiatio 99.9 7.1E-27 2.4E-31 203.8 10.0 222 75-311 65-311 (312)
32 3j0a_A TOLL-like receptor 5; m 99.9 1E-25 3.5E-30 221.2 18.8 228 71-310 46-352 (844)
33 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-25 1E-29 211.0 21.4 124 62-188 53-190 (635)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-25 6.4E-30 210.0 18.7 87 220-311 350-443 (562)
35 2o6q_A Variable lymphocyte rec 99.9 7.2E-25 2.5E-29 187.2 20.5 213 46-286 2-219 (270)
36 3o6n_A APL1; leucine-rich repe 99.9 4.4E-25 1.5E-29 198.3 19.1 222 71-310 43-309 (390)
37 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-25 1.5E-29 211.9 19.9 253 49-311 4-287 (680)
38 2z62_A TOLL-like receptor 4, v 99.9 7.6E-25 2.6E-29 187.6 18.9 203 74-311 29-239 (276)
39 3vq2_A TLR4, TOLL-like recepto 99.9 8.7E-26 3E-30 214.0 14.3 208 93-311 346-560 (606)
40 4ecn_A Leucine-rich repeat pro 99.9 7E-26 2.4E-30 220.7 13.7 181 71-266 446-658 (876)
41 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5E-32 208.2 1.5 222 71-311 41-289 (312)
42 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-26 2.2E-30 198.2 11.4 215 71-309 32-250 (317)
43 3oja_A Leucine-rich immune mol 99.9 8.3E-26 2.8E-30 208.6 12.5 215 71-309 32-250 (487)
44 3oja_B Anopheles plasmodium-re 99.9 7.8E-25 2.7E-29 207.2 19.0 222 71-310 49-315 (597)
45 4fmz_A Internalin; leucine ric 99.9 3.1E-24 1.1E-28 189.7 21.5 215 71-310 86-325 (347)
46 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-25 4.5E-30 212.8 13.4 223 71-310 305-535 (606)
47 2z66_A Variable lymphocyte rec 99.9 4.2E-25 1.4E-29 192.0 15.0 218 77-311 11-238 (306)
48 2z7x_B TOLL-like receptor 1, v 99.9 6.7E-25 2.3E-29 204.3 17.3 139 168-311 321-483 (520)
49 2z81_A CD282 antigen, TOLL-lik 99.9 4.6E-25 1.6E-29 206.7 16.1 85 220-310 331-424 (549)
50 3rfs_A Internalin B, repeat mo 99.9 4.8E-25 1.6E-29 188.5 14.4 209 71-297 39-247 (272)
51 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-24 5.8E-29 212.6 20.2 228 71-310 71-376 (844)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.9E-25 2.7E-29 205.8 16.8 138 168-310 350-511 (562)
53 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.9E-28 185.4 23.5 216 71-310 64-301 (347)
54 3zyi_A Leucine-rich repeat-con 99.9 3.3E-24 1.1E-28 196.3 18.9 218 79-311 60-281 (452)
55 3rfs_A Internalin B, repeat mo 99.9 4.6E-25 1.6E-29 188.6 12.1 216 73-312 19-238 (272)
56 3zyj_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 194.1 20.0 218 79-311 49-270 (440)
57 1o6v_A Internalin A; bacterial 99.9 1.8E-23 6E-28 192.2 22.0 213 71-310 175-389 (466)
58 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-23 4.9E-28 192.1 20.4 185 71-286 62-247 (457)
59 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.5E-28 180.2 18.5 174 123-309 31-208 (290)
60 2ca6_A RAN GTPase-activating p 99.9 2.1E-25 7.3E-30 200.1 5.9 233 71-312 30-319 (386)
61 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.6E-28 180.5 16.1 186 71-266 50-238 (276)
62 1o6v_A Internalin A; bacterial 99.9 5.5E-23 1.9E-27 188.9 21.7 220 71-311 110-368 (466)
63 2z63_A TOLL-like receptor 4, v 99.9 3.6E-24 1.2E-28 201.3 13.4 228 72-312 281-534 (570)
64 2z80_A TOLL-like receptor 2, v 99.9 3.3E-24 1.1E-28 190.1 12.2 207 71-289 74-318 (353)
65 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-24 2.2E-28 185.5 11.3 214 74-310 11-228 (317)
66 2z63_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 194.8 17.0 161 73-240 28-194 (570)
67 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.7E-27 172.5 19.6 203 50-267 17-220 (270)
68 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6.3E-27 184.7 20.8 207 71-310 83-300 (457)
69 1h6u_A Internalin H; cell adhe 99.9 5E-23 1.7E-27 179.1 15.9 190 71-285 39-230 (308)
70 3oja_A Leucine-rich immune mol 99.9 2.5E-23 8.5E-28 192.1 12.5 193 95-310 32-228 (487)
71 3m19_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 168.7 16.6 190 47-266 3-193 (251)
72 4glp_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 179.7 11.3 226 75-311 66-309 (310)
73 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 171.1 17.6 178 73-265 31-208 (290)
74 2ast_B S-phase kinase-associat 99.9 2.8E-24 9.7E-29 189.0 2.7 251 47-312 35-309 (336)
75 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 178.0 11.6 202 72-286 90-308 (310)
76 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5.2E-28 186.5 6.4 234 72-311 21-299 (362)
77 3g06_A SSPH2 (leucine-rich rep 99.9 9.5E-23 3.3E-27 192.5 11.8 205 73-311 61-299 (622)
78 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.4E-26 164.6 17.1 176 97-287 14-194 (251)
79 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.4E-26 169.6 17.5 192 94-310 38-231 (308)
80 3goz_A Leucine-rich repeat-con 99.9 1.1E-22 3.8E-27 180.9 8.3 227 77-309 2-266 (362)
81 2ast_B S-phase kinase-associat 99.9 2.1E-22 7E-27 177.1 7.6 223 73-310 47-285 (336)
82 1jl5_A Outer protein YOPM; leu 99.9 1.5E-21 5.3E-26 178.5 12.9 208 71-310 32-271 (454)
83 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.8E-26 164.3 10.6 190 74-306 32-236 (239)
84 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 7.9E-26 162.4 12.5 174 98-310 32-219 (239)
85 1z7x_W Ribonuclease inhibitor; 99.9 7.2E-23 2.4E-27 187.6 2.7 227 73-310 142-412 (461)
86 1z7x_W Ribonuclease inhibitor; 99.8 3.6E-22 1.2E-26 183.0 5.3 130 74-207 86-237 (461)
87 1jl5_A Outer protein YOPM; leu 99.8 4.8E-20 1.6E-24 168.6 19.3 181 73-286 111-291 (454)
88 2o6s_A Variable lymphocyte rec 99.8 2.3E-20 7.9E-25 152.9 13.3 162 124-297 29-190 (208)
89 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.7E-25 176.5 12.8 210 39-295 34-253 (571)
90 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.9E-25 154.2 10.3 185 46-247 4-189 (208)
91 2ca6_A RAN GTPase-activating p 99.8 6.5E-22 2.2E-26 177.4 2.0 211 89-310 24-288 (386)
92 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.4E-24 156.9 14.4 168 95-285 44-213 (291)
93 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.3E-24 170.3 16.4 187 75-286 23-211 (605)
94 4ay9_X Follicle-stimulating ho 99.8 7.5E-20 2.6E-24 161.9 12.6 241 49-306 9-256 (350)
95 1h6t_A Internalin B; cell adhe 99.8 2.4E-19 8.1E-24 154.6 15.0 188 98-310 25-214 (291)
96 3g06_A SSPH2 (leucine-rich rep 99.8 7.3E-19 2.5E-23 166.0 19.1 235 38-309 12-274 (622)
97 4b8c_D Glucose-repressible alc 99.8 5.7E-20 1.9E-24 177.1 6.2 262 16-309 129-404 (727)
98 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 144.8 13.0 161 45-239 15-175 (229)
99 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.7E-23 164.5 13.0 191 96-311 20-212 (605)
100 2v9t_B SLIT homolog 2 protein 99.8 2.8E-18 9.7E-23 141.7 13.7 148 126-285 14-165 (220)
101 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.1E-23 140.9 11.8 153 144-311 41-196 (197)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-18 1.1E-22 141.5 13.9 153 126-310 14-167 (220)
103 3e6j_A Variable lymphocyte rec 99.8 8E-18 2.7E-22 139.9 15.1 150 125-287 21-174 (229)
104 4g8a_A TOLL-like receptor 4; l 99.8 2.4E-18 8.1E-23 163.3 12.8 230 71-311 347-582 (635)
105 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.2E-22 138.8 11.2 133 94-237 41-173 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.8E-22 138.1 14.1 152 77-238 15-168 (220)
107 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.2E-23 152.8 10.4 171 100-285 21-202 (361)
108 2v9t_B SLIT homolog 2 protein 99.7 1.3E-17 4.3E-22 137.8 13.3 150 78-237 16-166 (220)
109 2xot_A Amphoterin-induced prot 99.7 6.2E-18 2.1E-22 150.1 11.5 176 77-267 22-204 (361)
110 4ay9_X Follicle-stimulating ho 99.7 4.9E-18 1.7E-22 150.2 10.5 210 78-306 14-233 (350)
111 1xeu_A Internalin C; cellular 99.7 2.5E-18 8.4E-23 146.0 8.1 169 95-287 17-187 (263)
112 1xeu_A Internalin C; cellular 99.7 9E-18 3.1E-22 142.5 10.4 171 71-267 17-187 (263)
113 1dce_A Protein (RAB geranylger 99.7 4.2E-19 1.4E-23 166.3 -3.0 118 172-303 442-567 (567)
114 3cvr_A Invasion plasmid antige 99.7 3E-16 1E-20 146.6 15.6 160 72-267 79-245 (571)
115 1dce_A Protein (RAB geranylger 99.7 2.3E-18 7.7E-23 161.3 -1.3 193 71-278 347-566 (567)
116 4b8c_D Glucose-repressible alc 99.7 3E-17 1E-21 158.2 5.3 142 89-241 216-359 (727)
117 3ogk_B Coronatine-insensitive 99.7 7.5E-18 2.6E-22 159.0 0.3 230 71-310 110-392 (592)
118 2ell_A Acidic leucine-rich nuc 99.7 6.7E-16 2.3E-20 121.8 10.8 129 147-310 24-161 (168)
119 3ogk_B Coronatine-insensitive 99.6 7E-17 2.4E-21 152.3 6.0 226 71-306 162-446 (592)
120 2je0_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 120.8 8.7 129 71-205 15-148 (149)
121 2ell_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 121.8 10.2 131 71-207 22-157 (168)
122 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.6E-20 123.5 11.3 129 150-310 11-140 (192)
123 1w8a_A SLIT protein; signaling 99.6 9.7E-16 3.3E-20 123.7 10.8 113 124-240 30-143 (192)
124 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 116.5 9.5 127 123-260 17-148 (149)
125 2o6r_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 116.9 11.3 136 47-188 5-141 (177)
126 1ds9_A Outer arm dynein; leuci 99.6 6.1E-17 2.1E-21 131.4 -1.1 130 166-311 43-187 (198)
127 2o6r_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 111.1 13.3 114 123-240 28-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.5 3.3E-14 1.1E-18 114.8 10.7 127 100-237 13-140 (193)
129 2p1m_B Transport inhibitor res 99.5 3.2E-16 1.1E-20 147.8 -1.6 207 93-310 285-520 (594)
130 2wfh_A SLIT homolog 2 protein 99.5 9.7E-14 3.3E-18 112.0 13.1 122 77-207 14-136 (193)
131 2p1m_B Transport inhibitor res 99.5 1.2E-15 4.1E-20 143.9 0.6 230 72-310 104-386 (594)
132 1a9n_A U2A', U2A'; complex (nu 99.5 3.6E-14 1.2E-18 112.8 8.4 106 72-184 18-126 (176)
133 1a9n_A U2A', U2A'; complex (nu 99.5 7.7E-14 2.6E-18 110.8 8.9 104 148-264 43-152 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 7.1E-16 2.4E-20 125.1 -3.2 128 142-285 43-185 (198)
135 3sb4_A Hypothetical leucine ri 99.4 1.6E-13 5.6E-18 120.0 8.6 57 122-179 100-156 (329)
136 3sb4_A Hypothetical leucine ri 99.4 1.8E-13 6.1E-18 119.8 5.4 220 73-309 25-310 (329)
137 3g39_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 100.2 10.3 109 124-239 10-118 (170)
138 3un9_A NLR family member X1; l 99.3 2.6E-14 9.1E-19 127.0 -3.5 136 123-267 101-254 (372)
139 3un9_A NLR family member X1; l 99.3 3.2E-14 1.1E-18 126.4 -3.1 179 122-309 71-283 (372)
140 3g39_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 98.4 10.4 102 98-207 10-112 (170)
141 2r9u_A Variable lymphocyte rec 99.3 9.8E-12 3.3E-16 98.4 10.3 108 125-239 14-121 (174)
142 2r9u_A Variable lymphocyte rec 99.3 1.8E-11 6E-16 97.0 10.5 101 99-207 14-115 (174)
143 4fdw_A Leucine rich hypothetic 99.3 1.2E-10 4.1E-15 104.4 15.2 213 74-308 136-357 (401)
144 4fdw_A Leucine rich hypothetic 99.2 2.2E-10 7.7E-15 102.6 14.8 218 73-308 157-382 (401)
145 2ifg_A High affinity nerve gro 99.2 1.2E-10 4E-15 102.5 11.3 96 84-185 20-117 (347)
146 2ifg_A High affinity nerve gro 99.0 4.1E-10 1.4E-14 98.9 8.8 106 126-238 11-118 (347)
147 2ra8_A Uncharacterized protein 99.0 2.8E-10 9.6E-15 100.4 6.4 157 141-307 166-341 (362)
148 2ra8_A Uncharacterized protein 98.9 2.1E-09 7E-14 94.9 6.0 153 119-283 168-341 (362)
149 3rw6_A Nuclear RNA export fact 98.6 3.7E-09 1.3E-13 88.9 0.3 151 47-199 76-255 (267)
150 1io0_A Tropomodulin; LRR prote 98.6 2.4E-08 8.1E-13 79.6 3.7 120 165-309 30-164 (185)
151 4fs7_A Uncharacterized protein 98.5 2.9E-06 9.9E-11 75.7 15.0 52 253-306 298-353 (394)
152 3rw6_A Nuclear RNA export fact 98.4 2.7E-07 9.2E-12 77.5 6.1 79 220-303 167-258 (267)
153 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.8E-12 75.7 3.4 119 142-285 31-164 (185)
154 4gt6_A Cell surface protein; l 98.3 1.4E-05 4.7E-10 71.2 14.1 53 253-307 312-368 (394)
155 4fs7_A Uncharacterized protein 98.2 9.6E-06 3.3E-10 72.3 12.2 211 71-304 160-374 (394)
156 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 70.7 2.9 78 224-306 62-149 (176)
157 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.3E-11 67.5 2.0 84 97-182 61-150 (176)
158 4gt6_A Cell surface protein; l 98.0 0.00014 4.7E-09 64.7 14.4 128 166-309 260-391 (394)
159 4h09_A Hypothetical leucine ri 97.7 0.0014 4.9E-08 57.6 15.3 103 191-305 236-342 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.6 4.6E-05 1.6E-09 60.7 3.5 115 191-308 37-169 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 5.6E-05 1.9E-09 60.1 3.1 117 166-285 36-170 (197)
162 4h09_A Hypothetical leucine ri 97.3 0.0007 2.4E-08 59.7 8.8 129 119-260 213-341 (379)
163 3rfe_A Platelet glycoprotein I 96.6 0.0042 1.4E-07 45.9 6.0 53 226-285 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.011 3.8E-07 43.5 6.4 35 149-183 33-67 (130)
165 2lz0_A Uncharacterized protein 43.9 32 0.0011 23.3 4.3 39 90-131 13-51 (100)
166 2lz0_A Uncharacterized protein 36.8 57 0.002 22.0 4.7 13 119-131 16-28 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-41 Score=296.89 Aligned_cols=270 Identities=23% Similarity=0.400 Sum_probs=147.6
Q ss_pred cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcc--cCceEecCCC--CCEEEEecCCCCCCcceecCCCCcccc--
Q 044980 14 VGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCK--WVGNFCNNLT--GHILELNLENPFGYLKYSDAEDDDHYM-- 87 (313)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--~~~v~c~~~~--~~v~~l~l~~~l~~L~~L~l~~n~~~~-- 87 (313)
+.|.++|++||++||+++.||. .+.+|.. +.+||. |.||.|...+ ++|+.+++.+ |.+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------------~~l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------------LNLPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEEC------------CCCSSCE
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCC------------CCccCCc
Confidence 3589999999999999998876 6789986 778998 9999997644 6788777654 44444
Q ss_pred cccccccCCCCCcEeeccC-CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCC
Q 044980 88 RSKLVVGNLSNLQYLDLSW-IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS 165 (313)
Q Consensus 88 ~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (313)
.+|..+.++++|++|++++ |.+ .+.+| .+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 4444444555555555542 332 22222 344445555555555554444444444455555555555555444444
Q ss_pred CCCCCCCCCEEEccCCCCCCCCchhhhcCc-ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh
Q 044980 166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLN-ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (313)
.+..+++|++|++++|.+++.+|..+..+. .|+. +++++| .+.+.+|..+..+. |+.|++++|.+.+..|..+.
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~--L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS--MTISRN--RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE--EECCSS--EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE--EECcCC--eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 444455555555555554444444444444 4444 444444 34444444444443 55555555544444444444
Q ss_pred hhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 245 IFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 245 ~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
.++ +|+.|++++|.+++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|
T Consensus 219 ~l~-----~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 219 SDK-----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp TTS-----CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred cCC-----CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 444 455555555444433 3334445555555555444444444444455555555554443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-38 Score=305.96 Aligned_cols=278 Identities=22% Similarity=0.259 Sum_probs=184.9
Q ss_pred CCccCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcccCceEecCCCCCEEEEecCC--------------------
Q 044980 11 KSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLEN-------------------- 70 (313)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~-------------------- 70 (313)
++.+.+.++|++||++||+++.||. .+++|+. +.+||.|.||.|+ .++|+.+++++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 3444457889999999999999988 8899985 7899999999997 68999998864
Q ss_pred ------------------CCCCcceecCCCCcccccccc--cccCCCCCcEeeccCCCCCCCCCCch-h-hccCCCCCEE
Q 044980 71 ------------------PFGYLKYSDAEDDDHYMRSKL--VVGNLSNLQYLDLSWIDCRLHVDSLS-W-LSSLLLLEHI 128 (313)
Q Consensus 71 ------------------~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~-~-~~~l~~L~~L 128 (313)
.+++|++|++++|.+.+.+|. .++++++|++|++++|.+ .+..| . +.++++|++|
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---DFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE---ECCSSCCSCCCCTTCSEE
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc---CCcCCHHHhccCCCCCEE
Confidence 357889999999999888888 888999999999999885 23333 2 3677888888
Q ss_pred EcCCccCCCCCchh---hhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980 129 DLGQVHLGKASDCW---IYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205 (313)
Q Consensus 129 ~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~ 205 (313)
++++|.+++..+.. +..+++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++.+++|++ |+++
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~--L~Ls 231 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH--LDIS 231 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE--EECC
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCE--EECc
Confidence 88888887766655 55666677777777766654442 5566666666666666665555 666666666 6666
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccC-CCCCCEEEcc
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGK-LSSLRNLDFS 280 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~-~~~L~~L~l~ 280 (313)
+| .+.+.+|..++.+++|++|++++|.+.+.+|.. .++ +|+.|++++|.+++. +.. +++|++|+++
T Consensus 232 ~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~-----~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 232 GN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp SS--CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT-----TCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CC--cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccC-----CCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 66 555556666666666666666666665544432 222 455555555544432 222 2444444444
Q ss_pred CCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 281 LNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 281 ~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+|.+++.+|..+..+++|++|++++|.++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCccc
Confidence 44444444444444444444444444444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.7e-36 Score=284.39 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=157.1
Q ss_pred CHHhHHHHHHhhhhcccCCCCC--------CCCCCCCCCCccc---CceEecCCCCCEEEEecCC------------CCC
Q 044980 17 KESERGALLKLKRNLKDLSNCL--------ASWNIGDGDCCKW---VGNFCNNLTGHILELNLEN------------PFG 73 (313)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~--------~~w~~~~~~~c~~---~~v~c~~~~~~v~~l~l~~------------~l~ 73 (313)
..+|++||.++++++.++.+.. .+|+. +.++|.| .||.|+. .++|+++++.+ +++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCc
Confidence 3569999999999987665442 37997 7899999 9999975 48999999986 567
Q ss_pred CcceecCCCCcc--------------------------------------------------------------------
Q 044980 74 YLKYSDAEDDDH-------------------------------------------------------------------- 85 (313)
Q Consensus 74 ~L~~L~l~~n~~-------------------------------------------------------------------- 85 (313)
+|+.|++++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 777777776632
Q ss_pred ----------cccccccccCCCCCcEeeccCCCCCCCCCC-----------------ch-hhc--cCCCCCEEEcCCccC
Q 044980 86 ----------YMRSKLVVGNLSNLQYLDLSWIDCRLHVDS-----------------LS-WLS--SLLLLEHIDLGQVHL 135 (313)
Q Consensus 86 ----------~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-----------------~~-~~~--~l~~L~~L~l~~n~l 135 (313)
++ +|..++++++|++|+|++|.+ .+. +| .+. ++++|++|++++|.+
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF---VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC---CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCcc---ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 23 566677777777777777765 221 33 444 666666666666666
Q ss_pred CCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCCCC------CCCCEEEccCCCCCCCCch--hhhcCccccccccccc
Q 044980 136 GKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLGNL------TSLKQIDLSHNQFNFTSPG--WLSKLNELSSFLLNLV 205 (313)
Q Consensus 136 ~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~~~L~l~ 205 (313)
.+.+|..+..+++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|+. |+++
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~--L~L~ 338 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM--LECL 338 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE--EECC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE--EeCc
Confidence 66666666666666666666666 665 555555443 56666666666665 5555 5666666666 5555
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC-ccEEEccccccccc---ccCC--CCCCEEEc
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA-LVSLILSHCQISAA---LGKL--SSLRNLDF 279 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~-L~~L~Ls~n~l~~~---~~~~--~~L~~L~l 279 (313)
+| .+.+.+| .++.+++|++|++++|.+. .+|..+..++ + |+.|++++|.++.. +... ++|++|++
T Consensus 339 ~N--~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-----~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 339 YN--QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-----EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp SC--CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-----TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEEC
T ss_pred CC--cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-----ccCcEEEccCCcCcccchhhhhcccCccCEEEC
Confidence 55 4444444 4444555555555555544 3344444443 4 55555555544422 2221 24444444
Q ss_pred cCCccccccCcccc
Q 044980 280 SLNMLNGSIPLSLG 293 (313)
Q Consensus 280 ~~n~l~~~ip~~l~ 293 (313)
++|.+.+.+|..+.
T Consensus 410 s~N~l~~~~p~~l~ 423 (636)
T 4eco_A 410 SYNEIGSVDGKNFD 423 (636)
T ss_dssp CSSCTTTTTTCSSC
T ss_pred cCCcCCCcchhhhc
Confidence 44444444444443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.7e-35 Score=256.79 Aligned_cols=273 Identities=16% Similarity=0.170 Sum_probs=233.3
Q ss_pred CCHHhHHHHHHhhhhcc-cCCCCCCCCC---CCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccc
Q 044980 16 CKESERGALLKLKRNLK-DLSNCLASWN---IGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKL 91 (313)
Q Consensus 16 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~ 91 (313)
+..+|++||++||..+. |+.++...|. ....++|.|.|+.|......+.. ...++++.|++++|.+. .+|.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED----ATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHH----HTSTTCCEEEEESSCCS-SCCS
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhc----ccccceeEEEccCCCch-hcCh
Confidence 45779999999999984 7777778883 22678999999999521110000 03456777777889988 6888
Q ss_pred cccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCC-
Q 044980 92 VVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGN- 169 (313)
Q Consensus 92 ~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~- 169 (313)
.+.++++|++|+|++|.+ . .+| .+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l---~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGL---M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp CGGGGTTCSEEEEESSCC---C-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hhhhCCCCCEEECCCCCc---c-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 899999999999999996 2 455 6889999999999999998 56888999999999999999998899987765
Q ss_pred --------CCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcch
Q 044980 170 --------LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQ 241 (313)
Q Consensus 170 --------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (313)
+++|++|++++|.++ .+|..+..+++|++ |++++| .+.+ +|..++.+++|++|++++|.+.+.+|.
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~--L~L~~N--~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS--LKIRNS--PLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE--EEEESS--CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE--EEccCC--CCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence 999999999999998 78889999999999 999998 5554 677899999999999999999999999
Q ss_pred hhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 242 VLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 242 ~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
.+..++ +|+.|++++|.+.+. +..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 248 ~~~~l~-----~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 248 IFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCC-----CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred HhcCCC-----CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888 999999999987766 778999999999999999999999999999999999987664
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-34 Score=276.84 Aligned_cols=278 Identities=17% Similarity=0.188 Sum_probs=195.6
Q ss_pred cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCC----CCC--ccc------------CceEecCCCCCEEEEecCC-----
Q 044980 14 VGCKESERGALLKLKRNLKDLSNCLASWNIGD----GDC--CKW------------VGNFCNNLTGHILELNLEN----- 70 (313)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~----~~~--c~~------------~~v~c~~~~~~v~~l~l~~----- 70 (313)
+.+..+|++||++||+++.+| +|+..+ .++ |.| .||.|+. .++|+.+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 334577999999999999877 565422 355 999 9999975 68999999987
Q ss_pred -------CCCCcceecC-CCCccccc------------------------------------------------------
Q 044980 71 -------PFGYLKYSDA-EDDDHYMR------------------------------------------------------ 88 (313)
Q Consensus 71 -------~l~~L~~L~l-~~n~~~~~------------------------------------------------------ 88 (313)
++++|+.|++ ++|.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 6777888888 55544333
Q ss_pred ----------------------ccccccCCCCCcEeeccCCCCCCCC--------------CCch-hhc--cCCCCCEEE
Q 044980 89 ----------------------SKLVVGNLSNLQYLDLSWIDCRLHV--------------DSLS-WLS--SLLLLEHID 129 (313)
Q Consensus 89 ----------------------~~~~l~~l~~L~~L~L~~n~~~~~~--------------~~~~-~~~--~l~~L~~L~ 129 (313)
+|..++++++|++|+|++|.+.... +.+| .+. ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 6667777778888888877752200 0134 444 777788888
Q ss_pred cCCccCCCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCC-------CCCCCCEEEccCCCCCCCCch--hhhcCcccc
Q 044980 130 LGQVHLGKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLG-------NLTSLKQIDLSHNQFNFTSPG--WLSKLNELS 198 (313)
Q Consensus 130 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~ 198 (313)
+++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+. .+++|++|++++|.++ .+|. .++.+++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 88877777777777777788888888876 776 5665433 3447888888888777 6776 777777888
Q ss_pred cccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC-ccEEEccccccccc---ccCC--C
Q 044980 199 SFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA-LVSLILSHCQISAA---LGKL--S 272 (313)
Q Consensus 199 ~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~-L~~L~Ls~n~l~~~---~~~~--~ 272 (313)
. |++++| .+. .+| .++.+++|+.|++++|.+. .+|..+..++ + |+.|++++|.++.. +... +
T Consensus 577 ~--L~Ls~N--~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-----~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 577 L--LDCVHN--KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-----DQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp E--EECTTS--CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-----TTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred E--EECCCC--Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-----ccCCEEECcCCCCCcCchhhhccccC
Confidence 7 777777 444 566 6777777888888888777 6666666666 6 88888888877643 3333 3
Q ss_pred CCCEEEccCCccccccCccc---c--CCCCCCEeeCCCCcCcc
Q 044980 273 SLRNLDFSLNMLNGSIPLSL---G--QISHLEYLDLSNNKFVT 310 (313)
Q Consensus 273 ~L~~L~l~~n~l~~~ip~~l---~--~l~~L~~L~l~~n~l~~ 310 (313)
+|+.|++++|++.+.+|... . ..++|+.|++++|+++.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~ 687 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc
Confidence 37788888888776555322 2 23477788888887763
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-32 Score=262.42 Aligned_cols=230 Identities=27% Similarity=0.274 Sum_probs=177.2
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+++|+.|++++|.+.+.+|..+++++.|++|++++|.+ .+.+| .+..+++|++|++++|.+++..|..+..+++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML---EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC---CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 456677777777777777777777777777777777764 33343 56677777777777777777777777777777
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc---------------
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL--------------- 214 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~--------------- 214 (313)
++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+. +++++| .+.+.
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~--L~Ls~N--~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLNTN--LFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE--EECCSS--EEESBCCGGGGTTTTCBCCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE--EECCCC--ccCCcCChHHhcccchhhhh
Confidence 77777777777777777777777777777777777777777777777777 777666 22222
Q ss_pred -------------------------------------------------------cccccccCCCcCEEEccCCCCCCCc
Q 044980 215 -------------------------------------------------------IPTSFIRLCKLTSIDFSSVKLSQDI 239 (313)
Q Consensus 215 -------------------------------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (313)
+|..++.+++|+.|++++|.++|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 3334555677888999999999888
Q ss_pred chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980 240 SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 240 ~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
|..++.++ .|+.|+|++|+++|. ++.+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.|
T Consensus 649 p~~l~~l~-----~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 649 PKEIGSMP-----YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CHHHhccc-----cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 88888888 899999999998876 788899999999999999999999999999999999999998865
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.4e-31 Score=232.31 Aligned_cols=225 Identities=22% Similarity=0.314 Sum_probs=205.6
Q ss_pred CCCCcceecCCC-CcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980 71 PFGYLKYSDAED-DDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 148 (313)
++++|+.|++++ |.+.+.+|..++++++|++|++++|.+ .+.+| .+.++++|++|++++|.+.+..|..+..+++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC---EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee---CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 789999999995 999999999999999999999999996 33444 6889999999999999999989999999999
Q ss_pred cCeeeccCcccCcCCCCCCCCCC-CCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980 149 LFFIVLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS 227 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 227 (313)
|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+. |++++| .+.+..|..+..+++|+.
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~--L~Ls~N--~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF--VDLSRN--MLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE--EECCSS--EEEECCGGGCCTTSCCSE
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE--EECcCC--cccCcCCHHHhcCCCCCE
Confidence 99999999999999999999998 999999999999999999999987 999 999999 777788999999999999
Q ss_pred EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeC
Q 044980 228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDL 303 (313)
Q Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l 303 (313)
|++++|.+.+.+|. +..++ +|+.|++++|.+++. +..+++|++|++++|+++|.+|.. ..+++|+.+++
T Consensus 226 L~L~~N~l~~~~~~-~~~l~-----~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 226 IHLAKNSLAFDLGK-VGLSK-----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp EECCSSEECCBGGG-CCCCT-----TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred EECCCCceeeecCc-ccccC-----CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 99999999987665 55566 999999999999865 788999999999999999999986 88999999999
Q ss_pred CCCc-Ccc
Q 044980 304 SNNK-FVT 310 (313)
Q Consensus 304 ~~n~-l~~ 310 (313)
++|+ +.|
T Consensus 299 ~~N~~lc~ 306 (313)
T 1ogq_A 299 ANNKCLCG 306 (313)
T ss_dssp CSSSEEES
T ss_pred cCCCCccC
Confidence 9997 555
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.7e-30 Score=223.93 Aligned_cols=252 Identities=22% Similarity=0.233 Sum_probs=211.5
Q ss_pred CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCC
Q 044980 47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLE 126 (313)
Q Consensus 47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 126 (313)
..|.|.++.|... .++.+.. +-.++|+.|++++|.+....+..+.++++|++|++++|.+.........+..+++|+
T Consensus 5 C~C~~~~l~c~~~--~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 5 CSCSGTEIRCNSK--GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp CEEETTEEECCSS--CCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CeeCCCEEEcCCC--CcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 4489999999642 2333322 134689999999999985444457899999999999999622111124677899999
Q ss_pred EEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980 127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205 (313)
Q Consensus 127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~ 205 (313)
+|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++ |+++
T Consensus 82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~ 158 (306)
T 2z66_A 82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--LKMA 158 (306)
T ss_dssp EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE--EECT
T ss_pred EEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE--EECC
Confidence 99999999875 45558889999999999999985544 57889999999999999999888888999999999 9999
Q ss_pred cccccccc-ccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980 206 SCMVRFHQ-LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS 280 (313)
Q Consensus 206 ~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~ 280 (313)
+| .+.+ .+|..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++. +..+++|++|+++
T Consensus 159 ~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 159 GN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp TC--EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CC--ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 98 5655 5788899999999999999999988788888888 999999999999875 7788999999999
Q ss_pred CCccccccCccccCCC-CCCEeeCCCCcCccc
Q 044980 281 LNMLNGSIPLSLGQIS-HLEYLDLSNNKFVTK 311 (313)
Q Consensus 281 ~n~l~~~ip~~l~~l~-~L~~L~l~~n~l~~~ 311 (313)
+|.+.+..|..+..++ +|++|++++|.++++
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999999999999985 999999999999875
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.1e-29 Score=229.75 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=73.3
Q ss_pred CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980 187 SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 187 ~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
.|..+..+++|++ |++++| .+.+..|..++.+++|++|++++|.+.+..+..+..++ +|+.|++++|++++
T Consensus 291 ~~~~~~~l~~L~~--L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 291 LKSVFSHFTDLEQ--LTLAQN--EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-----KLEVLDLSYNHIRA 361 (455)
T ss_dssp CTTTTTTCTTCCE--EECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----TCCEEECCSSCCCE
T ss_pred chhhcccCCCCCE--EECCCC--cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----cCCEEECCCCcccc
Confidence 3444455555555 555555 44455555666666666666666666655555555555 67777777777655
Q ss_pred c----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980 267 A----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 267 ~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
. +..+++|++|++++|++++..+..+..+++|++|++++|+++++.
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 4 566677777777777777544445566777777777777776653
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=221.48 Aligned_cols=255 Identities=22% Similarity=0.254 Sum_probs=204.3
Q ss_pred CCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-h
Q 044980 40 SWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-W 118 (313)
Q Consensus 40 ~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~ 118 (313)
.|.. ....|.|.++ |+-....++.+.-. -.++|+.|++++|.+++..+..+.++++|++|++++|.+ .+..+ .
T Consensus 22 ~~~~-~~~~C~~~~~-c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~ 95 (353)
T 2z80_A 22 SSNQ-ASLSCDRNGI-CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI---NTIEEDS 95 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CEECTTT
T ss_pred CCCc-cCCCCCCCeE-eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc---CccCHhh
Confidence 4443 5667999887 76444455544321 346899999999999876666899999999999999986 22223 5
Q ss_pred hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCC--CCCCCCCCCEEEccCCC-CCCCCchhhhcCc
Q 044980 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQ-FNFTSPGWLSKLN 195 (313)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~ 195 (313)
+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++|. +.+..+..+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 888999999999999999877767889999999999999998 4554 78889999999999995 6655667889999
Q ss_pred ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------
Q 044980 196 ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-------- 267 (313)
Q Consensus 196 ~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-------- 267 (313)
+|++ +++++| .+.+..|..++.+++|++|++++|.+.......+..++ +|+.|++++|.+++.
T Consensus 175 ~L~~--L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 175 FLEE--LEIDAS--DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp EEEE--EEEEET--TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEEEEEESCBCTTCCCC-----
T ss_pred CCCE--EECCCC--CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-----cccEEECCCCccccccccccccc
Confidence 9999 999998 77777888999999999999999998654433444566 899999999887752
Q ss_pred ---------------------------ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeCCCCcCccc
Q 044980 268 ---------------------------LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 268 ---------------------------~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l~~n~l~~~ 311 (313)
+..+++|++|++++|+++ .+|.. +..+++|++|++++|+++++
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 456789999999999999 77776 48899999999999999875
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=6.9e-28 Score=222.18 Aligned_cols=227 Identities=22% Similarity=0.198 Sum_probs=183.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 148 (313)
++++|+.|++++|.+.+..|.+|.++++|++|+|++|.+ ..++ .+.++++|++|++++|.+.+..+..+..+++
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL----KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC----CccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 678899999999999888888899999999999999986 2233 4778899999999999998887878889999
Q ss_pred cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcC--
Q 044980 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT-- 226 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~-- 226 (313)
|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+. |++.+| .+....+..+..+++|+
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~--L~l~~n--~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV--LRLRHL--NINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE--EEEESC--CCCEECTTCSCSCTTCCEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE--EeCCCC--cCcEeChhhcccCccccee
Confidence 999999999998877888899999999999999998776677888888888 888877 44444444555555444
Q ss_pred ----------------------EEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980 227 ----------------------SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS 280 (313)
Q Consensus 227 ----------------------~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~ 280 (313)
.|++++|.+.+..+..+..++ +|+.|++++|.+++. +..+++|++|+++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-----YLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----TCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-----ccCeeECCCCcCCccChhhccccccCCEEECC
Confidence 455555555544334555566 888999998888765 7778889999999
Q ss_pred CCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 281 LNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 281 ~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+|++.+..|..+..+++|++|++++|++++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCce
Confidence 999998778888999999999999998875
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=9.2e-28 Score=215.81 Aligned_cols=225 Identities=20% Similarity=0.193 Sum_probs=155.9
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+++|+.|++++|.+.+..+..+.++++|++|++++|.+ ....+ .+.++++|++|++++|.++...+..+..+++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC---CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 467888888888888776666788888888888888885 23333 46788888888888888886655556788888
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcC----------------c------------------
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL----------------N------------------ 195 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l----------------~------------------ 195 (313)
++|++++|.+++..+..+..+++|++|++++|.+++.....+..+ .
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 888888888887667778888888888888888775422222111 1
Q ss_pred ---ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---cc
Q 044980 196 ---ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LG 269 (313)
Q Consensus 196 ---~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~ 269 (313)
+|+. |++++| .+.. +..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++++. +.
T Consensus 224 ~~~~L~~--L~l~~n--~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 224 VNVELTI--LKLQHN--NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp CCSSCCE--EECCSS--CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECCSSCCCEEECSSS
T ss_pred ccccccE--EECCCC--CCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccc-----cCCEEECCCCcCcccCcccC
Confidence 1222 222222 1111 13456677777777777777776677777666 777777777777665 44
Q ss_pred CCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 270 ~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
.+++|++|++++|++. .+|..+..+++|++|++++|++++
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 5677777777777777 566666666777777777776654
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-27 Score=226.48 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=168.0
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+++|+.|++++|.+.+..|..|+++++|++|+|++|.+ .+..+ .+.++++|++|++++|.+++..+..+..+++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC---CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 478899999999998887777888999999999999886 33333 57888999999999999887766667888899
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccc----------------------------
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL---------------------------- 201 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~---------------------------- 201 (313)
++|++++|.+++..|..+..+++|++|++++|.+++..+. .+++|+.+.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence 9999999999877777888889999999999988754322 223332200
Q ss_pred ----------ccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---c
Q 044980 202 ----------LNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---L 268 (313)
Q Consensus 202 ----------L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~ 268 (313)
|++++| .+.+ +..+..+++|+.|++++|.+.+..|..+..++ +|+.|+|++|.+++. +
T Consensus 227 ~~~~~~~L~~L~L~~n--~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~ 297 (597)
T 3oja_B 227 RGPVNVELTILKLQHN--NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYG 297 (597)
T ss_dssp ECSCCSCCCEEECCSS--CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEECSS
T ss_pred ccccCCCCCEEECCCC--CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCCccc
Confidence 233333 2221 34567778888888888888877777777777 888888888887766 5
Q ss_pred cCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 269 ~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 55778888888888887 677777777777777777777754
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1e-27 Score=219.59 Aligned_cols=230 Identities=20% Similarity=0.238 Sum_probs=166.4
Q ss_pred CCCCcceecCCCCccccccc-ccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchh--hhhc
Q 044980 71 PFGYLKYSDAEDDDHYMRSK-LVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCW--IYSL 146 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l 146 (313)
++++|+.|++++|.+.+.++ ..|.++++|++|++++|.+ ....| .+.++++|++|++++|.+++..+.. +..+
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT---CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCcc---CccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 56778888888887765553 4577788888888888775 22223 5777888888888888887654443 6777
Q ss_pred CccCeeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcC-------------------------------
Q 044980 147 RHLFFIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKL------------------------------- 194 (313)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l------------------------------- 194 (313)
++|++|++++|.+++..|.. +..+++|++|++++|.+.+..|..+..+
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 88888888888888666665 6778888888888888876666544433
Q ss_pred ---ccccccccccccccc-------------------------------------------------------------c
Q 044980 195 ---NELSSFLLNLVSCMV-------------------------------------------------------------R 210 (313)
Q Consensus 195 ---~~L~~~~L~l~~n~~-------------------------------------------------------------~ 210 (313)
++|+. |++++|.. .
T Consensus 209 ~~~~~L~~--L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 209 FKNTSITT--LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TTTCEEEE--EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccceeee--EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 34555 55544410 2
Q ss_pred cccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCcccc
Q 044980 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~ 286 (313)
+.+..|..++.+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++. +..+++|++|++++|++++
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-----HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-----cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 2223456677777888888888888777676777776 888888888887655 6778888888888888887
Q ss_pred ccCccccCCCCCCEeeCCCCcCcc
Q 044980 287 SIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 287 ~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
..|..+..+++|++|++++|++++
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cChhhccccccccEEECCCCcccc
Confidence 778888888888888888888875
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.2e-27 Score=214.44 Aligned_cols=244 Identities=19% Similarity=0.188 Sum_probs=204.3
Q ss_pred cCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEc
Q 044980 51 WVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDL 130 (313)
Q Consensus 51 ~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 130 (313)
|..+.|.... ++.+.- +-.++++.|++++|.+.+..+..|.++++|++|+|++|.+. ......+.++++|++|++
T Consensus 56 ~~~v~c~~~~--l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRG--LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSC--CSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCC--cCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEEC
Confidence 4678886422 222211 13368999999999999988889999999999999999962 111236889999999999
Q ss_pred CCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCccccccccccccccc
Q 044980 131 GQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMV 209 (313)
Q Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~ 209 (313)
++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|...+.++ ..+..+++|+. |++++|
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~--L~L~~n-- 206 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY--LNLGMC-- 206 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE--EECTTS--
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE--EECCCC--
Confidence 9999998877778899999999999999997666788999999999999965444444 46889999999 999998
Q ss_pred ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980 210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~ 285 (313)
.+.. +| .+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|++++. +..+++|+.|+|++|+++
T Consensus 207 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 207 NIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccc-cc-cccccccccEEECcCCcCcccCcccccCcc-----CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 5554 34 578899999999999999998888898888 999999999999876 788999999999999999
Q ss_pred cccCccccCCCCCCEeeCCCCcCcc
Q 044980 286 GSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 286 ~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..+..+..+++|++|++++|.+..
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccChHHhccccCCCEEEccCCCcCC
Confidence 7666778889999999999998764
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-26 Score=220.16 Aligned_cols=227 Identities=21% Similarity=0.159 Sum_probs=124.8
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCch-hhhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDC-WIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 148 (313)
.+++|+.|++++|.++ .+|..+.++++|++|++++|.+ ....+ .+..+++|++|++++|.+.+.++. .+..+++
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 4566777777777766 4666667777777777777764 22222 455566666666666665543333 3555566
Q ss_pred cCeeeccCcccCcCC--CCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc-ccccCCCc
Q 044980 149 LFFIVLSYNQFQGKI--PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT-SFIRLCKL 225 (313)
Q Consensus 149 L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~-~~~~~~~L 225 (313)
|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+. +++++| .+.+..+. .+..+++|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL--LDLAFT--RLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE--EECTTC--CEECCTTCCTTTTCTTC
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe--EECCCC--cCCCcccchhhhCcccC
Confidence 666666666655433 445555666666666666655555555555555665 555555 33333332 24555555
Q ss_pred CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-------ccCCCCCCEEEccCCccccccCccccCCCCC
Q 044980 226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-------LGKLSSLRNLDFSLNMLNGSIPLSLGQISHL 298 (313)
Q Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L 298 (313)
++|++++|.+.+..|..+..++ +|+.|++++|.+++. +..+++|++|++++|.+++..|..+..+++|
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLP-----ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCT-----TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CEEECCCCccCCcCHHHHhCCC-----CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 5555555555555454444444 555555555554431 3444555555555555554444445555555
Q ss_pred CEeeCCCCcCcc
Q 044980 299 EYLDLSNNKFVT 310 (313)
Q Consensus 299 ~~L~l~~n~l~~ 310 (313)
++|++++|++++
T Consensus 503 ~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 503 NHVDLSHNRLTS 514 (606)
T ss_dssp CEEECCSSCCCG
T ss_pred CEEECCCCccCc
Confidence 555555555443
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.2e-26 Score=199.81 Aligned_cols=244 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred CCcccCceEecCCC---------CCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeecc
Q 044980 47 DCCKWVGNFCNNLT---------GHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLS 105 (313)
Q Consensus 47 ~~c~~~~v~c~~~~---------~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 105 (313)
..|.|..+.|.... ..++.+++++ ++++|+.|++++|.+.+..|..+.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 34788888886321 2333344433 34555555555555555445555555555555555
Q ss_pred CCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC--cCCCCCCCCCCCCCEEEccCCC
Q 044980 106 WIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQ 182 (313)
Q Consensus 106 ~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 182 (313)
+|.+. .+| .+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.
T Consensus 109 ~n~l~----~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 109 KNQLK----ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp SSCCS----BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCcCC----ccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 55541 111 11 145555555555555544445555555555555555553 2344445555555555555555
Q ss_pred CCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccc
Q 044980 183 FNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262 (313)
Q Consensus 183 l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n 262 (313)
++. +|..+. ++|++ |++++| .+.+..|..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|
T Consensus 183 l~~-l~~~~~--~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N 250 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTE--LHLDGN--KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHLNNN 250 (330)
T ss_dssp CCS-CCSSCC--TTCSE--EECTTS--CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEECCSS
T ss_pred ccc-CCcccc--ccCCE--EECCCC--cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-----CCCEEECCCC
Confidence 542 332221 45555 555555 44444455555666666666666666554444455555 5666666666
Q ss_pred ccccc---ccCCCCCCEEEccCCccccccCccccC------CCCCCEeeCCCCcC
Q 044980 263 QISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQ------ISHLEYLDLSNNKF 308 (313)
Q Consensus 263 ~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~------l~~L~~L~l~~n~l 308 (313)
.++.. +..+++|++|++++|++++..+..+.. .+.++.+++++|.+
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 55543 445556666666666665333333322 24555666666655
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5e-28 Score=230.51 Aligned_cols=275 Identities=18% Similarity=0.151 Sum_probs=219.8
Q ss_pred HHhHHHHHHhhhhcccCCCCCCCCCCCCC---CCcccCce-EecCC--CCCEEEEecCCCCCCcceecCCCCcccccccc
Q 044980 18 ESERGALLKLKRNLKDLSNCLASWNIGDG---DCCKWVGN-FCNNL--TGHILELNLENPFGYLKYSDAEDDDHYMRSKL 91 (313)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~---~~c~~~~v-~c~~~--~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~ 91 (313)
+.+......++.-...-. -..|...+. ..+.|..- .|..- ...|+.- .. .+++.|+++++.+.|.+|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~--~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~---~~-~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALN--GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN---SN-GRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTT--GGGCCCCC------CCCCCSSCGGGTTCCTTEEEC---TT-CCEEEEECTTSCCEEEECG
T ss_pred hhHHHHHHHHHHHHHHcC--CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEc---CC-CCEEEEEecCcccCCcCCh
Confidence 334444445544433332 257875221 12478632 22111 1234432 12 6899999999999999999
Q ss_pred cccCCCCCcEeeccCCCCC-------------------------------------------------------------
Q 044980 92 VVGNLSNLQYLDLSWIDCR------------------------------------------------------------- 110 (313)
Q Consensus 92 ~l~~l~~L~~L~L~~n~~~------------------------------------------------------------- 110 (313)
+++++++|++|+|++|.+.
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 9999999999999999530
Q ss_pred --------------CCCCCch-hhccCCCCCEEEcCCccCCCC-----------------Cchhhh--hcCccCeeeccC
Q 044980 111 --------------LHVDSLS-WLSSLLLLEHIDLGQVHLGKA-----------------SDCWIY--SLRHLFFIVLSY 156 (313)
Q Consensus 111 --------------~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~ 156 (313)
...+ +| .+.++++|++|++++|.+++. +|..+. .+++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 0112 44 588899999999999999985 787777 999999999999
Q ss_pred cccCcCCCCCCCCCCCCCEEEccCCC-CCC-CCchhhhcC------ccccccccccccccccccccccc--ccccCCCcC
Q 044980 157 NQFQGKIPSTLGNLTSLKQIDLSHNQ-FNF-TSPGWLSKL------NELSSFLLNLVSCMVRFHQLIPT--SFIRLCKLT 226 (313)
Q Consensus 157 n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~~~L~l~~n~~~~~~~~~~--~~~~~~~L~ 226 (313)
|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++ |++++| .+. .+|. .++++++|+
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~--L~L~~n--~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI--IYIGYN--NLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE--EECCSS--CCS-SCCCHHHHTTCTTCC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE--EECCCC--cCC-ccCchhhhccCCCCC
Confidence 99999999999999999999999998 888 899888886 99999 999998 666 6888 899999999
Q ss_pred EEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCC-CCEEEccCCccccccCccccCCC--CCCE
Q 044980 227 SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSS-LRNLDFSLNMLNGSIPLSLGQIS--HLEY 300 (313)
Q Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~-L~~L~l~~n~l~~~ip~~l~~l~--~L~~ 300 (313)
+|++++|.+.|.+| .+..++ +|+.|++++|.++.. +..+++ |++|++++|.++ .+|..+...+ +|++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEI-----KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEE-----EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred EEeCcCCcCccchh-hhCCCC-----CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 99999999998888 777777 999999999998754 778888 999999999999 8999887755 8999
Q ss_pred eeCCCCcCccc
Q 044980 301 LDLSNNKFVTK 311 (313)
Q Consensus 301 L~l~~n~l~~~ 311 (313)
|++++|+++|.
T Consensus 407 L~Ls~N~l~~~ 417 (636)
T 4eco_A 407 IDFSYNEIGSV 417 (636)
T ss_dssp EECCSSCTTTT
T ss_pred EECcCCcCCCc
Confidence 99999999874
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=215.93 Aligned_cols=229 Identities=21% Similarity=0.158 Sum_probs=152.6
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCcc---------------
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVH--------------- 134 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~--------------- 134 (313)
++++|+.|++++|.+....+..|.++++|++|+|++|.+. ...+ .+.++++|++|++++|.
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc---cCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 4556666666666665544444556666666666666541 1111 34444455555555544
Q ss_pred ---------CCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980 135 ---------LGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205 (313)
Q Consensus 135 ---------l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~ 205 (313)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+. |+++
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~--L~l~ 232 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS--LSIT 232 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE--EEEE
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccE--EECc
Confidence 44444444444555555555555554444444555555555555555554444444444446666 6666
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccC
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSL 281 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~ 281 (313)
+| .+....+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++++. +..+++|+.|++++
T Consensus 233 ~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 233 HC--NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-----RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp SS--CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-----TCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred CC--cccccCHHHhcCccccCeeECCCCcCCccChhhccccc-----cCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 66 45544446788999999999999999987777787777 999999999999876 78899999999999
Q ss_pred CccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 282 NMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 282 n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
|++++..+..|..+++|++|++++|.++++
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999966666788999999999999998764
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=211.51 Aligned_cols=244 Identities=20% Similarity=0.215 Sum_probs=204.2
Q ss_pred cCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEc
Q 044980 51 WVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDL 130 (313)
Q Consensus 51 ~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 130 (313)
|..+.|.... ++.+.- +-.++++.|++++|.+.+..+..|.++++|++|+|++|.+ .......|.++++|++|++
T Consensus 45 ~~~v~c~~~~--l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKN--LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCC--CSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCC--cCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEEC
Confidence 5577775422 222211 1346799999999999988888999999999999999996 2222236889999999999
Q ss_pred CCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCC-chhhhcCccccccccccccccc
Q 044980 131 GQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCMV 209 (313)
Q Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~~~L~l~~n~~ 209 (313)
++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|...+.+ +..+.++++|+. |++++|
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~--L~L~~n-- 195 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY--LNLAMC-- 195 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE--EECTTS--
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe--ecCCCC--
Confidence 999999887778899999999999999999776778999999999999996644444 457889999999 999998
Q ss_pred ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980 210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~ 285 (313)
.+.. +| .+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|++++. +..+++|+.|+|++|+++
T Consensus 196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCc-----cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 5543 44 478899999999999999988888888888 999999999999876 788999999999999999
Q ss_pred cccCccccCCCCCCEeeCCCCcCcc
Q 044980 286 GSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 286 ~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..+..+..+++|+.|++++|.+..
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ccChhHhccccCCCEEEcCCCCccC
Confidence 7666778899999999999998764
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-26 Score=197.93 Aligned_cols=202 Identities=19% Similarity=0.138 Sum_probs=119.8
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCC-chhhccCCCCCEEEcCCcc-CCCCCchhhhhcCcc
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS-LSWLSSLLLLEHIDLGQVH-LGKASDCWIYSLRHL 149 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 149 (313)
.++|+.|++++|.+.+..+..+.++++|++|++++|.+ ... ...+.++++|++|++++|. +....+..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc---ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 35666677777766665555566666777777766664 111 1245666666677776665 555545556666666
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 229 (313)
++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++ |++++| .+....+..+..+++|+.|+
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH--LFLHGN--RISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE--EECCCC--cccccCHHHhcCccccCEEE
Confidence 66666666666555566666666666666666666544445556666666 666655 44444444455556666666
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~ 285 (313)
+++|.+.+..|..+..++ +|+.|++++|.+++. +..+++|++|++++|.+.
T Consensus 184 l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCT-----TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHhHccCcc-----cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 666666555555555544 555555555555544 444555555555555554
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2e-26 Score=218.37 Aligned_cols=227 Identities=21% Similarity=0.262 Sum_probs=134.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCC--chhhhhc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKAS--DCWIYSL 146 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l 146 (313)
.+++|+.|++++|.+.+..|..+.+++.|++|++++|.+ .+.++ .+.++++|++|++++|.+.+.. +..+..+
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK---RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS---CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc---ccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 567788888888887776666777777777777777764 22222 3556666666666666665543 3445566
Q ss_pred CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch-hhhcCcccccccccccccccccccccccccccCCCc
Q 044980 147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL 225 (313)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L 225 (313)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|+. |++++| .+....|..++.+++|
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV--LNLSHS--LLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE--EECTTC--CCBTTCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE--EECCCC--ccCCcCHHHHhCCCCC
Confidence 6666666666666655555666666666666666665544332 2555666666 666555 4444455555555666
Q ss_pred CEEEccCCCCCCCc---chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCC
Q 044980 226 TSIDFSSVKLSQDI---SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHL 298 (313)
Q Consensus 226 ~~L~l~~n~l~~~~---~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L 298 (313)
++|++++|.+.+.. +..+..++ +|+.|++++|.+++. +..+++|++|++++|++++..|..+..+++|
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLG-----RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CEEECCCCCCCccccccchhhccCC-----CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 66666666555421 12344444 555666665555443 4455555555555555555555555555555
Q ss_pred CEeeCCCCcCcc
Q 044980 299 EYLDLSNNKFVT 310 (313)
Q Consensus 299 ~~L~l~~n~l~~ 310 (313)
+|++++|++++
T Consensus 527 -~L~L~~N~l~~ 537 (606)
T 3t6q_A 527 -YLNLASNHISI 537 (606)
T ss_dssp -EEECCSSCCCC
T ss_pred -EEECcCCcccc
Confidence 55555555554
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1e-25 Score=198.21 Aligned_cols=243 Identities=18% Similarity=0.172 Sum_probs=120.4
Q ss_pred CcccCceEecCCC---------CCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccC
Q 044980 48 CCKWVGNFCNNLT---------GHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSW 106 (313)
Q Consensus 48 ~c~~~~v~c~~~~---------~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 106 (313)
.|.|..+.|.... ..++.+++.+ ++++|+.|++++|.+++..|..+.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3788888886321 2334444433 345555555555555554455555555555555555
Q ss_pred CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC--cCCCCCCCCCCCCCEEEccCCCC
Q 044980 107 IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 107 n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l 183 (313)
|.+. .+| .+. ++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+
T Consensus 112 n~l~----~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 112 NHLV----EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp SCCC----SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CcCC----ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 5541 122 111 45555555555555444444555555555555555553 2333444333 444444444444
Q ss_pred CCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980 184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ 263 (313)
Q Consensus 184 ~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~ 263 (313)
++ +|..+. ++|++ |++++| .+....+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|+
T Consensus 185 ~~-l~~~~~--~~L~~--L~l~~n--~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~ 252 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNE--LHLDHN--KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-----TLRELHLDNNK 252 (332)
T ss_dssp SS-CCSSSC--SSCSC--CBCCSS--CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-----TCCEEECCSSC
T ss_pred Cc-cCcccc--CCCCE--EECCCC--cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-----CCCEEECCCCc
Confidence 32 222211 34444 555554 44444445555555555556655555555444455554 55556665555
Q ss_pred cccc---ccCCCCCCEEEccCCccccccCccccC------CCCCCEeeCCCCcCc
Q 044980 264 ISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQ------ISHLEYLDLSNNKFV 309 (313)
Q Consensus 264 l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~------l~~L~~L~l~~n~l~ 309 (313)
++.. +..+++|++|++++|++++..+..+.. .+.|+.+++++|.+.
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 5433 445555555666655555333333332 234555555555543
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-26 Score=202.03 Aligned_cols=201 Identities=20% Similarity=0.238 Sum_probs=180.2
Q ss_pred CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 173 (313)
....+++|++++|.+ . .+| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 79 ~~~~l~~L~L~~n~l---~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPL---P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCC---S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred cccceeEEEccCCCc---h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 357899999999996 2 444 5788999999999999999 67888999999999999999999 889999999999
Q ss_pred CEEEccCCCCCCCCchhhhc---------CcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh
Q 044980 174 KQIDLSHNQFNFTSPGWLSK---------LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244 (313)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~---------l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (313)
++|++++|.+.+.+|..+.. +++|++ |++++| .+. .+|..++.+++|++|++++|.+.+ +|..+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~--L~L~~n--~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQS--LRLEWT--GIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCE--EEEEEE--CCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCE--EECcCC--CcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc
Confidence 99999999998899887654 999999 999998 555 688899999999999999999996 556688
Q ss_pred hhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980 245 IFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 245 ~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
.++ +|+.|++++|.+.+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.|.+
T Consensus 227 ~l~-----~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 227 HLP-----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp GCT-----TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred cCC-----CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 888 999999999998766 788999999999999999999999999999999999999998764
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.6e-26 Score=200.17 Aligned_cols=221 Identities=20% Similarity=0.193 Sum_probs=189.3
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.++++.|++++|.+++..+..+.++++|++|++++|.+ ....| .+.++++|++|++++|.++.. |..+ .++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQ 124 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC---CeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh--ccccc
Confidence 36799999999999987777899999999999999996 23323 688999999999999998854 3322 26899
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC--CCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI 228 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 228 (313)
+|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++ +++++| .+.. +|..+. ++|++|
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~--L~l~~n--~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY--IRIADT--NITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE--EECCSS--CCCS-CCSSCC--TTCSEE
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE--EECCCC--cccc-CCcccc--ccCCEE
Confidence 99999999997767778899999999999999863 66778999999999 999998 4443 555443 789999
Q ss_pred EccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980 229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS 304 (313)
Q Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~ 304 (313)
++++|.+.+..+..+..++ +|+.|++++|.+++. +..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLN-----NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ECTTSCCCEECTGGGTTCT-----TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred ECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 9999999988788888888 999999999998865 778899999999999999 899999999999999999
Q ss_pred CCcCccc
Q 044980 305 NNKFVTK 311 (313)
Q Consensus 305 ~n~l~~~ 311 (313)
+|++++.
T Consensus 272 ~N~i~~~ 278 (330)
T 1xku_A 272 NNNISAI 278 (330)
T ss_dssp SSCCCCC
T ss_pred CCcCCcc
Confidence 9999863
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.1e-26 Score=217.58 Aligned_cols=181 Identities=20% Similarity=0.214 Sum_probs=124.9
Q ss_pred CcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCC
Q 044980 48 CCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLE 126 (313)
Q Consensus 48 ~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~ 126 (313)
.|.|.++ |+.....++.+.-. -.++|+.|++++|.+++..|.+|.++++|++|++++|.+ .+..+ .+.++++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCC
T ss_pred cCCCCce-EECCCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc---CccChhhccccccCC
Confidence 4888888 76544344433321 235788888888888777777778888888888888875 22222 577778888
Q ss_pred EEEcCCccCCCCCchhhhhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccc
Q 044980 127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNL 204 (313)
Q Consensus 127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l 204 (313)
+|++++|.+++..+..+..+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++ |++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~--L~L 155 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE--LEI 155 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE--EEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe--eec
Confidence 88888888877777777788888888888888775 345667777888888888877444443 46777777777 777
Q ss_pred cccccccccccccccc------------------------cCCCcCEEEccCCCCCC
Q 044980 205 VSCMVRFHQLIPTSFI------------------------RLCKLTSIDFSSVKLSQ 237 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~------------------------~~~~L~~L~l~~n~l~~ 237 (313)
++| .+.+..|..++ .+++|++|++++|.+.+
T Consensus 156 ~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 156 KAL--SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EET--TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCC--cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 776 45544444443 35677777777777765
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-25 Score=193.39 Aligned_cols=215 Identities=20% Similarity=0.183 Sum_probs=163.3
Q ss_pred CCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc-c
Q 044980 82 DDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ-F 159 (313)
Q Consensus 82 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~ 159 (313)
++.+. .+|..+ .++|++|++++|.+ .... ..+..+++|++|++++|.+++..+..+..+++|++|++++|. +
T Consensus 20 ~~~l~-~ip~~~--~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 20 QQGLQ-AVPVGI--PAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp SSCCS-SCCTTC--CTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred cCCcc-cCCcCC--CCCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 34444 244433 36788888888886 1212 247778888888888888887767778888888888888887 6
Q ss_pred CcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980 160 QGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI 239 (313)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (313)
....|..+..+++|++|++++|.+++..|..+..+++|++ |++++| .+....+..++.+++|++|++++|.+.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY--LYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE--EECCCC--cccccCHhHhccCCCccEEECCCCcccccC
Confidence 6555777888888888888888888777777888888888 888887 566656666788888888888888888665
Q ss_pred chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 240 SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 240 ~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
+..+..++ +|+.|++++|.+++. +..+++|+.|++++|.+++..+..+..+++|++|++++|+++++
T Consensus 170 ~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCcc-----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 55677666 888888888887765 66778888888888888865555678888888888888887653
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.9e-26 Score=211.98 Aligned_cols=223 Identities=18% Similarity=0.182 Sum_probs=149.3
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCC-CCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGK-ASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L 149 (313)
++++|++|++++|.+++..|..|+++++|++|++++|.+ ..+|.. .+++|++|++++|.+++ ..|..+..+++|
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL----VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC----CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce----eecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence 678899999999998887788888899999999998886 245544 78888889998888876 456778888888
Q ss_pred CeeeccCcccCcCCCCCCCCCCCC--CEEEccCCCC--CCCCchhhhcC--------------------------c----
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSL--KQIDLSHNQF--NFTSPGWLSKL--------------------------N---- 195 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~p~~~~~l--------------------------~---- 195 (313)
++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+ +
T Consensus 118 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 118 KFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp CEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred eEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 888888887764 233444444 5555555555 33333333221 1
Q ss_pred -----------------------------------------------------cccccccccccccccccccccccc---
Q 044980 196 -----------------------------------------------------ELSSFLLNLVSCMVRFHQLIPTSF--- 219 (313)
Q Consensus 196 -----------------------------------------------------~L~~~~L~l~~n~~~~~~~~~~~~--- 219 (313)
+|+. +++++| .+.+.+|..+
T Consensus 195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~--L~l~~n--~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY--FSISNV--KLQGQLDFRDFDY 270 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE--EEEEEE--EEESCCCCCCCCC
T ss_pred ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE--EEeecc--cccCccccchhhc
Confidence 2222 223332 2222222222
Q ss_pred --------------------------------------------------ccCCCcCEEEccCCCCCCCcchhhhhhccc
Q 044980 220 --------------------------------------------------IRLCKLTSIDFSSVKLSQDISQVLDIFSAY 249 (313)
Q Consensus 220 --------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (313)
..+++|++|++++|.+.+.+|..+..++
T Consensus 271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-- 348 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-- 348 (520)
T ss_dssp CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS--
T ss_pred ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCC--
Confidence 4566777777777777776666666666
Q ss_pred cccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeCCCCcCcc
Q 044980 250 GTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 250 ~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l~~n~l~~ 310 (313)
+|+.|++++|++++. +..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++
T Consensus 349 ---~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 349 ---ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp ---SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ---CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 777777777777652 667777777777777777656653 5666777777777777754
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.4e-25 Score=215.32 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=135.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
++++|+.|++++|.+.+..|..++++++|++|++++|.+ ....+ .+.++++|++|++++|.+.+..+..+..+++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL---SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---CccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 456677777777777666666666777777777777764 12122 36667777777777777766655566677777
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh--cCcccccccccccccccccccccccccccC-----
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS--KLNELSSFLLNLVSCMVRFHQLIPTSFIRL----- 222 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~----- 222 (313)
++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|+. +++++| .+.+..|..+..+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~--L~L~~n--~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK--LELSSN--QIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE--EECTTC--CCCCBCTTGGGGSSEECE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE--EECCCC--cccccChhhhhhhhhhhh
Confidence 7777777777766666666777777777777777665555443 3466666 666666 4444444433332
Q ss_pred ----------------------CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCE
Q 044980 223 ----------------------CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRN 276 (313)
Q Consensus 223 ----------------------~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~ 276 (313)
++|+.|++++|.+.+..|..+..+. .++|+.|++++|.+++. +..+++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccE
Confidence 3445555555555554444444433 01366777777666544 556666777
Q ss_pred EEccCCccccccCccccCCCCCCEeeCCC
Q 044980 277 LDFSLNMLNGSIPLSLGQISHLEYLDLSN 305 (313)
Q Consensus 277 L~l~~n~l~~~ip~~l~~l~~L~~L~l~~ 305 (313)
|++++|.+.+..|..+..+++|++|++++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccc
Confidence 77777766655555454444444444443
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=6e-26 Score=199.64 Aligned_cols=220 Identities=21% Similarity=0.214 Sum_probs=187.5
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.++|+.|++++|.+.+..+..+.++++|++|++++|.+ ....| .+.++++|++|++++|.++...+. +. ++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI---SKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc---CccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCC
Confidence 46899999999999987777899999999999999996 23323 688999999999999999854332 22 7899
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC--CCCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN--FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI 228 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 228 (313)
+|++++|.+++..+..+..+++|++|++++|.++ +..|..+..+ +|+. +++++| .+.. +|..+. ++|++|
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~--L~l~~n--~l~~-l~~~~~--~~L~~L 198 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY--LRISEA--KLTG-IPKDLP--ETLNEL 198 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC--CBCCSS--BCSS-CCSSSC--SSCSCC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE--EECcCC--CCCc-cCcccc--CCCCEE
Confidence 9999999999665667899999999999999985 3667777777 8999 999998 5544 555543 689999
Q ss_pred EccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980 229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS 304 (313)
Q Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~ 304 (313)
++++|.+.+..+..+..++ +|+.|++++|.+++. +..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYS-----KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCT-----TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred ECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 9999999988878888888 999999999998876 778899999999999999 899999999999999999
Q ss_pred CCcCccc
Q 044980 305 NNKFVTK 311 (313)
Q Consensus 305 ~n~l~~~ 311 (313)
+|++++.
T Consensus 273 ~N~l~~~ 279 (332)
T 2ft3_A 273 TNNITKV 279 (332)
T ss_dssp SSCCCBC
T ss_pred CCCCCcc
Confidence 9999863
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.1e-27 Score=203.83 Aligned_cols=222 Identities=21% Similarity=0.173 Sum_probs=181.9
Q ss_pred cceecCCCCcc-ccccccccc-------CCCCCcEeeccCCCCCCCCCCch-hh--ccCCCCCEEEcCCccCCCCCchhh
Q 044980 75 LKYSDAEDDDH-YMRSKLVVG-------NLSNLQYLDLSWIDCRLHVDSLS-WL--SSLLLLEHIDLGQVHLGKASDCWI 143 (313)
Q Consensus 75 L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~~~-~~--~~l~~L~~L~l~~n~l~~~~~~~~ 143 (313)
|+.|++++|.+ .+.+|..+. ++++|++|++++|.+ .+.+| .+ ..+++|++|++++|.+++. |..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV---TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC---BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc---cchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence 88899999988 456666665 789999999999996 33444 33 7899999999999999988 7778
Q ss_pred hhc-----CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCC--Cchhh--hcCccccccccccccccccccc-
Q 044980 144 YSL-----RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT--SPGWL--SKLNELSSFLLNLVSCMVRFHQ- 213 (313)
Q Consensus 144 ~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~~~L~l~~n~~~~~~- 213 (313)
..+ ++|++|++++|++++..|..+..+++|++|++++|.+.+. .|..+ ..+++|++ |++++| .+..
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~--L~L~~N--~l~~~ 216 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV--LALRNA--GMETP 216 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE--EECTTS--CCCCH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE--EECCCC--cCcch
Confidence 877 8999999999999988778999999999999999998765 33444 78999999 999999 5542
Q ss_pred -ccc-cccccCCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEcccccccccccC-CCCCCEEEccCCccccccC
Q 044980 214 -LIP-TSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAALGK-LSSLRNLDFSLNMLNGSIP 289 (313)
Q Consensus 214 -~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~L~~L~l~~n~l~~~ip 289 (313)
.++ ..+..+++|++|++++|.+.+..| ..+..++ +|+.|++++|.++..... .++|++|++++|++++ +|
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~-~p 290 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-----QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-NP 290 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-----TCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS-CC
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-----CCCEEECCCCccChhhhhccCCceEEECCCCCCCC-Ch
Confidence 222 344677899999999999998764 3344455 899999999999865211 1799999999999995 47
Q ss_pred ccccCCCCCCEeeCCCCcCccc
Q 044980 290 LSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 290 ~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
. +..+++|++|++++|++++.
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTTCC
T ss_pred h-HhhCCCCCEEeccCCCCCCC
Confidence 6 89999999999999999874
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=221.20 Aligned_cols=228 Identities=24% Similarity=0.245 Sum_probs=136.6
Q ss_pred CCCCcceecCCCCcccccc-cccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchh--hhhc
Q 044980 71 PFGYLKYSDAEDDDHYMRS-KLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCW--IYSL 146 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l 146 (313)
++++|+.|++++|...+.+ |.+|.++++|++|+|++|.+ ....| .+.++++|++|++++|.+++..+.. +..+
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC---cccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 5667777777777555555 55677777777777777775 22223 5667777777777777776644432 6677
Q ss_pred CccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcC--cccccccccccccccccccccccccccCC
Q 044980 147 RHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKL--NELSSFLLNLVSCMVRFHQLIPTSFIRLC 223 (313)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~~~L~l~~n~~~~~~~~~~~~~~~~ 223 (313)
++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..+ ++|+. ++++.| .+.+..|..++.+.
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~--L~L~~n--~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF--FSLAAN--SLYSRVSVDWGKCM 198 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC--CEECCS--BSCCCCCCCCCSSS
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce--EECCCC--ccccccccchhhcC
Confidence 777777777777765443 456777777777777777776666666555 55555 555555 33333333333333
Q ss_pred C------cCEEEccCCCCCCCcc---------------------------------------------------------
Q 044980 224 K------LTSIDFSSVKLSQDIS--------------------------------------------------------- 240 (313)
Q Consensus 224 ~------L~~L~l~~n~l~~~~~--------------------------------------------------------- 240 (313)
+ |+.|++++|.+.+..+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 2 5555555555444333
Q ss_pred -----hhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 241 -----QVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 241 -----~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
..+..++ +|+.|++++|.+++. +..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 279 ~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 279 FSLNSRVFETLK-----DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp CEECSCCSSSCC-----CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred cccChhhhhcCC-----CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 3333333 555555555555443 4555666666666666665555566666666666666666543
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.9e-25 Score=210.96 Aligned_cols=124 Identities=23% Similarity=0.176 Sum_probs=89.1
Q ss_pred CEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEE
Q 044980 62 HILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHI 128 (313)
Q Consensus 62 ~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L 128 (313)
.++.+++++ ++++|++|++++|.+++..+.+|.++++|++|+|++|.+ .... ..|.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---CCCCHHHhcCCCCCCEE
Confidence 556666665 567788888888887776666777888888888888875 1212 247778888888
Q ss_pred EcCCccCCCCCchhhhhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCc
Q 044980 129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSP 188 (313)
Q Consensus 129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p 188 (313)
++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 888888877666667778888888888887764 356667778888888888877654433
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.9e-25 Score=210.01 Aligned_cols=87 Identities=24% Similarity=0.254 Sum_probs=64.3
Q ss_pred ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCc-cc
Q 044980 220 IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPL-SL 292 (313)
Q Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~-~l 292 (313)
+.+++|++|++++|.+.+.+|..+..++ +|+.|++++|++++. +..+++|++|++++|.+++.+|. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLK-----RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCS-----SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccC-----CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 5567788888888888877777776666 788888888887752 56778888888888888765665 35
Q ss_pred cCCCCCCEeeCCCCcCccc
Q 044980 293 GQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 293 ~~l~~L~~L~l~~n~l~~~ 311 (313)
..+++|++|++++|++++.
T Consensus 425 ~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTCCEEECCSSCCCGG
T ss_pred cCcccCCEEECCCCCCCcc
Confidence 6677777777777777653
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.2e-25 Score=187.19 Aligned_cols=213 Identities=19% Similarity=0.206 Sum_probs=159.3
Q ss_pred CCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCC
Q 044980 46 GDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLL 124 (313)
Q Consensus 46 ~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~ 124 (313)
.++|.|.|+.|... ...+.++++++.++. +|..+. +.|++|++++|.+ ....+ .+.++++
T Consensus 2 ~~~C~~~~~~C~c~-------------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l---~~~~~~~~~~l~~ 62 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-------------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKL---SSLPSKAFHRLTK 62 (270)
T ss_dssp CCCBGGGTCSBEEE-------------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCC---SCCCTTSSSSCTT
T ss_pred CccCCCCCCCCEeC-------------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCC---CeeCHHHhcCCCC
Confidence 47899999888531 124455666677774 666554 6799999999986 22222 6888999
Q ss_pred CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++ |++
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~L 140 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY--LSL 140 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE--EEC
Confidence 999999999998776666788899999999999998666667788899999999999988777777778888888 788
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS 280 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~ 280 (313)
++| .+....+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+++. +..+++|+.|+++
T Consensus 141 s~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 141 GYN--ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-----ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCC--cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCC-----CcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 777 55555555577777888888888887766555566666 777777777776654 5556777777777
Q ss_pred CCcccc
Q 044980 281 LNMLNG 286 (313)
Q Consensus 281 ~n~l~~ 286 (313)
+|.+..
T Consensus 214 ~N~~~c 219 (270)
T 2o6q_A 214 ENPWDC 219 (270)
T ss_dssp SSCBCC
T ss_pred CCCeeC
Confidence 777653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-25 Score=198.29 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=166.6
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+++++.++++++.+...-+..+.++++|++|++++|.+ .... ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 568999999999998764444578899999999999986 2222 268899999999999999999888889999999
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC------
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC------ 223 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~------ 223 (313)
++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|++ |++++| .+...- ++.++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~---~~~l~~L~~L~ 192 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN--LQLSSN--RLTHVD---LSLIPSLFHAN 192 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE--EECCSS--CCSBCC---GGGCTTCSEEE
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE--EECCCC--cCCccc---cccccccceee
Confidence 99999999999444444689999999999999999888888999999999 999888 333321 12222
Q ss_pred ----------------------------------CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--
Q 044980 224 ----------------------------------KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-- 267 (313)
Q Consensus 224 ----------------------------------~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-- 267 (313)
+|+.|++++|.+.+. ..+..++ +|+.|++++|.+++.
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCEEES
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCC-----CccEEECCCCcCCCcCh
Confidence 344455555555432 2344444 677777777776654
Q ss_pred --ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 268 --LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 268 --~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC
T ss_pred hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee
Confidence 566677777777777776 456556667777777777777654
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4.5e-25 Score=211.92 Aligned_cols=253 Identities=20% Similarity=0.176 Sum_probs=205.8
Q ss_pred cccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCE
Q 044980 49 CKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEH 127 (313)
Q Consensus 49 c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~ 127 (313)
|.+..+.|... +++.+.- .-.++++.|++++|.+.+..+..|.++++|++|++++|.+ .+..| .+.++++|++
T Consensus 4 ~~~~~~~cs~~--~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 4 VSHEVADCSHL--KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKV 77 (680)
T ss_dssp CBSSEEECCSS--CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCE
T ss_pred eECCeeECCCC--Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCE
Confidence 45556777532 2222211 1226899999999999988777899999999999999986 33334 6889999999
Q ss_pred EEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980 128 IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 128 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++ |++++|
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~n 155 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE--LLLSNN 155 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE--EECCSS
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE--EEccCC
Confidence 999999999877667999999999999999999777788999999999999999999888888999999999 999998
Q ss_pred ccccccccccccc--cCCCcCEEEccCCCCCCCcchhhhhhccc----------------------cccCccEEEccccc
Q 044980 208 MVRFHQLIPTSFI--RLCKLTSIDFSSVKLSQDISQVLDIFSAY----------------------GTYALVSLILSHCQ 263 (313)
Q Consensus 208 ~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~~----------------------~~~~L~~L~Ls~n~ 263 (313)
.+.+..+..+. .+++|+.|++++|.+.+..|..+..+... ..++|+.|++++|.
T Consensus 156 --~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 156 --KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp --CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred --cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 66666666554 45789999999999998877666544310 11368888999988
Q ss_pred cccc----ccCCC--CCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 264 ISAA----LGKLS--SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 264 l~~~----~~~~~--~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
+++. +..++ +|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 8765 55554 499999999999988888999999999999999998764
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.6e-25 Score=187.57 Aligned_cols=203 Identities=21% Similarity=0.156 Sum_probs=107.8
Q ss_pred CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
+|+.|++++|.+++..+..+.++++|++|++++|.+ ....+ .+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 355555555555544444455555555555555543 11111 34445555555555555544444444455555555
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|.+.+..+..+..+++|++|++++|.+.+. .+|..++.+++|++|++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------------KLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------------------------CCCGGGGGCTTCCEEECCS
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee---------------------------cCchhhccCCCCCEEECCC
Confidence 5555555433333444455555555555544431 1345555556666666666
Q ss_pred CCCCCCcchhhhhhccccccCcc----EEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980 233 VKLSQDISQVLDIFSAYGTYALV----SLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN 305 (313)
Q Consensus 233 n~l~~~~~~~l~~~~~~~~~~L~----~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~ 305 (313)
|.+.+..+..+..+. +|+ .|++++|.+++. .....+|++|++++|.+++..+..+..+++|++|++++
T Consensus 159 N~l~~~~~~~~~~l~-----~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 159 NKIQSIYCTDLRVLH-----QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp SCCCEECGGGGHHHH-----TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCCcCCHHHhhhhh-----hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 666655555555555 444 666666666554 22233677777777777644444456667777777777
Q ss_pred CcCccc
Q 044980 306 NKFVTK 311 (313)
Q Consensus 306 n~l~~~ 311 (313)
|+++++
T Consensus 234 N~~~c~ 239 (276)
T 2z62_A 234 NPWDCS 239 (276)
T ss_dssp SCBCCC
T ss_pred Cccccc
Confidence 766653
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=8.7e-26 Score=214.04 Aligned_cols=208 Identities=23% Similarity=0.231 Sum_probs=150.0
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCC
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLT 171 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~ 171 (313)
+..+++|++|++++|.+.........+..+++|++|++++|.+.+. |..+..+++|++|++++|.+.+..| ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 3445555555555555311100122455666777777777766543 3446667777777777777776655 5677778
Q ss_pred CCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc-ccccccccCCCcCEEEccCCCCCCCcchhhhhhcccc
Q 044980 172 SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ-LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG 250 (313)
Q Consensus 172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (313)
+|++|++++|.+.+..|..+..+++|+. |++++| .+.+ .+|..++.+++|++|++++|.+.+..|..+..++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 497 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNT--LKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH--- 497 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCE--EECTTC--EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCE--EECCCC--cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc---
Confidence 8888888888887777777888888888 888877 5555 4677788888888888888888877777777777
Q ss_pred ccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCC-CCCEeeCCCCcCccc
Q 044980 251 TYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQIS-HLEYLDLSNNKFVTK 311 (313)
Q Consensus 251 ~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~-~L~~L~l~~n~l~~~ 311 (313)
+|+.|++++|++++. +..+++|++|++++|+++ .+|..+..++ +|+++++++|.+.++
T Consensus 498 --~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 498 --RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp --TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred --cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 888888888888765 677888888888888888 7777777776 588888888888764
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=7e-26 Score=220.66 Aligned_cols=181 Identities=19% Similarity=0.258 Sum_probs=143.0
Q ss_pred CCCCcceecCCCCcccc-----------------ccccccc--CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEc
Q 044980 71 PFGYLKYSDAEDDDHYM-----------------RSKLVVG--NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDL 130 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l 130 (313)
++++|+.|++++|.+++ .+|+.++ ++++|++|+|++|.+ .+.+| .+.++++|++|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEEC
Confidence 78899999999999998 3888877 999999999999985 45555 6888999999999
Q ss_pred CCcc-CCC-CCchhhhhcC-------ccCeeeccCcccCcCCCC--CCCCCCCCCEEEccCCCCCCCCchhhhcCccccc
Q 044980 131 GQVH-LGK-ASDCWIYSLR-------HLFFIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS 199 (313)
Q Consensus 131 ~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 199 (313)
++|. +++ .+|..+..+. +|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .++.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 9998 887 7787777766 8999999999998 8888 8888999999999999988 777 7888888998
Q ss_pred ccccccccccccccccccccccCCC-cCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980 200 FLLNLVSCMVRFHQLIPTSFIRLCK-LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 200 ~~L~l~~n~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
|++++| .+. .+|..+..+++ |+.|++++|.+. .+|..+.... .++|+.|++++|++++
T Consensus 600 --L~Ls~N--~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 600 --LKLDYN--QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---VYVMGSVDFSYNKIGS 658 (876)
T ss_dssp --EECCSS--CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---SSCEEEEECCSSCTTT
T ss_pred --EECcCC--ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc---cCCCCEEECcCCcCCC
Confidence 888888 455 57878888888 888888888887 5565444332 0025555555555443
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-27 Score=208.18 Aligned_cols=222 Identities=17% Similarity=0.179 Sum_probs=182.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhc-------cCCCCCEEEcCCccCCCCCchh
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-------SLLLLEHIDLGQVHLGKASDCW 142 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-------~l~~L~~L~l~~n~l~~~~~~~ 142 (313)
..++|+.+++++|.+ .+|..+... |++|++++|.+ ....++ .+. ++++|++|++++|.+++..|..
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTV--RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEE--EEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--Hhhcccccccc--cCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 456788999999999 678766654 99999999986 222334 232 6899999999999999888876
Q ss_pred h--hhcCccCeeeccCcccCcCCCCCCCCC-----CCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc-
Q 044980 143 I--YSLRHLFFIVLSYNQFQGKIPSTLGNL-----TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL- 214 (313)
Q Consensus 143 ~--~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~- 214 (313)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..|..++.+++|++ |++++| .+.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~ 189 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST--LDLSDN--PELGER 189 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE--EECCSC--TTCHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE--EECCCC--CcCcch
Confidence 5 8899999999999999976 7777666 89999999999999888889999999999 999999 44433
Q ss_pred -ccccc--ccCCCcCEEEccCCCCCCC--cc-hhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCc
Q 044980 215 -IPTSF--IRLCKLTSIDFSSVKLSQD--IS-QVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNM 283 (313)
Q Consensus 215 -~~~~~--~~~~~L~~L~l~~n~l~~~--~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~ 283 (313)
+|..+ +.+++|++|++++|.+.+. ++ ..+..++ +|+.|++++|++++. +..+++|++|++++|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-----CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-----CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 34444 8899999999999999842 22 2234456 999999999999884 4557899999999999
Q ss_pred cccccCccccCCCCCCEeeCCCCcCccc
Q 044980 284 LNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 284 l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
++ .+|..+. ++|++|++++|++++.
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred cC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 99 8998877 8999999999999874
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.5e-26 Score=198.16 Aligned_cols=215 Identities=17% Similarity=0.072 Sum_probs=184.0
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+.+..|..+.++++|++|++++|.+ .+ .+.+..+++|++|++++|.+++.. ..++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~-~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YE-TLDLESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---EE-EEEETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---Cc-chhhhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 456899999999999998888899999999999999996 22 334889999999999999987643 448899
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccc-ccCCCcCEEE
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSF-IRLCKLTSID 229 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~-~~~~~L~~L~ 229 (313)
+|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|+. |++++| .+....+..+ ..+++|++|+
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQY--LDLKLN--EIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEE--EECTTS--CCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCE--EECCCC--CCCcccHHHHhhccCcCCEEE
Confidence 9999999998654433 678999999999999877778899999999 999999 6777667666 4789999999
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+++|.+.+. +. ...++ +|+.|++++|++++. +..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 176 L~~N~l~~~-~~-~~~l~-----~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 176 LQYNFIYDV-KG-QVVFA-----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CTTSCCCEE-EC-CCCCT-----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred CCCCcCccc-cc-ccccc-----cCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 999999865 22 22345 899999999999876 778899999999999999 78999999999999999999
Q ss_pred cCc
Q 044980 307 KFV 309 (313)
Q Consensus 307 ~l~ 309 (313)
+++
T Consensus 248 ~~~ 250 (317)
T 3o53_A 248 GFH 250 (317)
T ss_dssp CCB
T ss_pred Ccc
Confidence 997
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.3e-26 Score=208.61 Aligned_cols=215 Identities=18% Similarity=0.094 Sum_probs=186.7
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+.+..|..|.++++|++|+|++|.+ .+..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC---EEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC---CCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 445899999999999998888999999999999999996 22233 889999999999999998653 348899
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccc-cCCCcCEEE
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFI-RLCKLTSID 229 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~-~~~~L~~L~ 229 (313)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+. |++++| .+.+..|..+. .+++|+.|+
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY--LDLKLN--EIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE--EECTTS--CCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE--EECCCC--CCCCcChHHHhhhCCcccEEe
Confidence 999999999965544 3588999999999999888888999999999 999999 77787888776 789999999
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+++|.+.+..+ ...++ +|+.|+|++|.+++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 176 Ls~N~l~~~~~--~~~l~-----~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFA-----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CTTSCCCEEEC--CCCCT-----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cCCCccccccc--cccCC-----CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 99999987633 22355 899999999999877 778899999999999999 58998999999999999999
Q ss_pred cCc
Q 044980 307 KFV 309 (313)
Q Consensus 307 ~l~ 309 (313)
.+.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 987
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.8e-25 Score=207.19 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=167.6
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
.+.+++.+++++|.+....+..+.++++|++|+|++|.+ .+..+ .+..+++|++|++++|.+++..|..+..+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 567899999999998875555678899999999999996 23233 68899999999999999999888888999999
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC------
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC------ 223 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~------ 223 (313)
++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+. |++++| .+.+.- ++.++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN--LQLSSN--RLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE--EECTTS--CCSBCC---GGGCTTCSEEE
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE--EECcCC--CCCCcC---hhhhhhhhhhh
Confidence 99999999999555555789999999999999999888888999999999 999998 444321 22222
Q ss_pred ----------------------------------CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--
Q 044980 224 ----------------------------------KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-- 267 (313)
Q Consensus 224 ----------------------------------~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-- 267 (313)
+|+.|++++|.+.+. ..+..++ +|+.|++++|.+++.
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~-----~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLSYNELEKIMY 271 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCEEES
T ss_pred cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCC-----CCCEEECCCCccCCCCH
Confidence 344444444444432 3344444 677777777766554
Q ss_pred --ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 268 --LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 268 --~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCC
T ss_pred HHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCc
Confidence 566677777777777776 356656666777777777776653
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.1e-24 Score=189.66 Aligned_cols=215 Identities=26% Similarity=0.305 Sum_probs=104.6
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCc-----------------
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQV----------------- 133 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n----------------- 133 (313)
.+++|+.|++++|.+.. + +.+.++++|++|++++|.+ ..++.+..+++|++|++++|
T Consensus 86 ~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNI----SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCC----CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred cCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcc----cCchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 56667777777776654 2 2466666666776666664 12222444444444444444
Q ss_pred ------cCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980 134 ------HLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 134 ------~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+++++++|.+.+..+ +..+++|++ +++++|
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~--L~l~~n 231 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS--LKIGNN 231 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE--EECCSS
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE--EEccCC
Confidence 4433322 3444445555555554442 121 3333444444444444332221 444455555 555554
Q ss_pred ccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980 208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~ 285 (313)
.+....+ +..+++|++|++++|.+.+. +.+..++ +|+.|++++|.+++. +..+++|++|++++|.+.
T Consensus 232 --~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 232 --KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT-----KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp --CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT-----TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred --ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC-----CcCEEEccCCccCCChhhcCCCCCCEEECcCCcCC
Confidence 2222211 44455555555555555432 2233333 555555555555444 444555555555555555
Q ss_pred cccCccccCCCCCCEeeCCCCcCcc
Q 044980 286 GSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 286 ~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..|..+..+++|++|++++|++++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CcChhHhhccccCCEEEccCCcccc
Confidence 5555555555555555555555544
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.3e-25 Score=212.83 Aligned_cols=223 Identities=20% Similarity=0.175 Sum_probs=193.7
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCC--chhhhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKAS--DCWIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~ 148 (313)
.+++|+.|++++|.+ +.+| .+ .+++|++|++++|.. ...+ .+..+++|++|++++|.+++.. +..+..+++
T Consensus 305 ~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~---~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG---SISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS---CEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC---ccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 556788888888888 6677 45 788888888888853 1222 4678899999999999988663 677899999
Q ss_pred cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS 227 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 227 (313)
|++|++++|.++ .+|..+..+++|++|++++|.+.+..| ..+..+++|+. +++++| .+.+..|..++.+++|++
T Consensus 378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY--LDISYT--NTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE--EECTTS--CCEECCTTTTTTCTTCCE
T ss_pred ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE--EECcCC--CCCccchhhhcCCCCCCE
Confidence 999999999998 467889999999999999999988777 67899999999 999999 777888999999999999
Q ss_pred EEccCCCCCCC-cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEee
Q 044980 228 IDFSSVKLSQD-ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLD 302 (313)
Q Consensus 228 L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~ 302 (313)
|++++|.+.+. +|..+..++ +|+.|++++|++++. +..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTT-----NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred EECCCCcCCCcchHHhhccCC-----CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 99999999874 677788888 999999999999876 78899999999999999988899999999999999
Q ss_pred CCCCcCcc
Q 044980 303 LSNNKFVT 310 (313)
Q Consensus 303 l~~n~l~~ 310 (313)
+++|+++.
T Consensus 528 l~~N~l~~ 535 (606)
T 3vq2_A 528 CSFNRIET 535 (606)
T ss_dssp CTTSCCCC
T ss_pred CCCCcCcc
Confidence 99999874
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=4.2e-25 Score=191.98 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=184.2
Q ss_pred eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCC--CchhhhhcCccCee
Q 044980 77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKA--SDCWIYSLRHLFFI 152 (313)
Q Consensus 77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L 152 (313)
.++++++.++ .+|..+. ++|++|++++|.+ ..+| .+.++++|++|++++|.++.. .+..+..+++|++|
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 3455556655 3565443 6899999999996 2343 478999999999999999744 25667789999999
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccccccccccccccCCCcCEEEcc
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFS 231 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 231 (313)
++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++ |++++| .+....+..+..+++|++|+++
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--HTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE--EECTTS--CCEECSTTTTTTCTTCCEEECT
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE--EECCCC--cCCccchhhcccCcCCCEEECC
Confidence 99999998 577778899999999999999986554 57889999999 999999 6777788889999999999999
Q ss_pred CCCCCC-CcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 232 SVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 232 ~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+|.+.+ .+|..+..++ +|+.|++++|.+++. +..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 159 ~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 159 GNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCccccccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 999987 5677788787 999999999998876 778899999999999999766768899999999999999
Q ss_pred cCccc
Q 044980 307 KFVTK 311 (313)
Q Consensus 307 ~l~~~ 311 (313)
++++.
T Consensus 234 ~l~~~ 238 (306)
T 2z66_A 234 HIMTS 238 (306)
T ss_dssp CCCBC
T ss_pred CCccc
Confidence 99874
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.7e-25 Score=204.30 Aligned_cols=139 Identities=21% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcchh-hh
Q 044980 168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDISQV-LD 244 (313)
Q Consensus 168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~ 244 (313)
..+++|++|++++|.+++..|..+..+++|++ |++++| .+.+ .+|..++.+++|++|++++|.+.+.+|.. +.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELET--LILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE--EECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCE--EEccCC--ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 34556666666666666656666666666666 666666 3333 34455566666666666666665533332 22
Q ss_pred hhc-----------------cccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeC
Q 044980 245 IFS-----------------AYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDL 303 (313)
Q Consensus 245 ~~~-----------------~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l 303 (313)
.++ ..-.++|+.|++++|+++.. +..+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 222 00001455555555555433 335566666666666666 45544 555666666666
Q ss_pred CCCcCccc
Q 044980 304 SNNKFVTK 311 (313)
Q Consensus 304 ~~n~l~~~ 311 (313)
++|+++++
T Consensus 476 ~~N~~~c~ 483 (520)
T 2z7x_B 476 HTNPWDCS 483 (520)
T ss_dssp CSSCBCCC
T ss_pred cCCCCccc
Confidence 66666553
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.6e-25 Score=206.65 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=63.7
Q ss_pred ccCCCcCEEEccCCCCCCCcchh---hhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCc
Q 044980 220 IRLCKLTSIDFSSVKLSQDISQV---LDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPL 290 (313)
Q Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~---l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~ 290 (313)
+.+++|++|++++|.+.+.+|.. +..++ +|+.|++++|++++. +..+++|++|++++|+++ .+|.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWP-----SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSST-----TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred hcCccccEEEccCCccccccccchhhhhccc-----cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence 35677788888888777655432 34444 788888888888643 677888888888888888 7888
Q ss_pred cccCCCCCCEeeCCCCcCcc
Q 044980 291 SLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 291 ~l~~l~~L~~L~l~~n~l~~ 310 (313)
.+..+++|++|++++|++++
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSC
T ss_pred hhcccccccEEECCCCCccc
Confidence 88888888888888887753
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.8e-25 Score=188.52 Aligned_cols=209 Identities=23% Similarity=0.246 Sum_probs=178.2
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+.. ...+..+++|++|++++|.+ ..++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCC----CCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCC----CCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 56778888888888764 23478899999999999986 2356788999999999999999988777788999999
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+. |++++| .+.+..+..++.+++|++|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE--LDLSYN--QLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE--EECCCC--CcCccCHHHhcCCccCCEEEC
Confidence 9999999999777777889999999999999999777777889999999 999998 677777777888999999999
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCC
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISH 297 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~ 297 (313)
++|.+.+..+..+..++ +|+.|++++|.+.+ .+++|+.|+++.|.++|.+|.+++.++.
T Consensus 189 ~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~~---~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLT-----SLQYIWLHDNPWDC---TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCCSCCCTTTTTTCT-----TCCEEECCSSCBCC---CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCcCCccCHHHHhCCc-----CCCEEEccCCCccc---cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999988777778787 89999999998865 4667888999999999999998887654
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=212.55 Aligned_cols=228 Identities=20% Similarity=0.183 Sum_probs=163.8
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-h--hhccCCCCCEEEcCCccCCCCCc-hhhhhc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-S--WLSSLLLLEHIDLGQVHLGKASD-CWIYSL 146 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 146 (313)
++++|+.|++++|.+.+..|..|.++++|++|+|++|.+ .+.+ + .+.++++|++|++++|.+.+..+ ..+..+
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC---SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC---CcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 566777777777777766666777777777777777764 2212 1 25666666777776666665443 346666
Q ss_pred CccCeeeccCcccCcCCCCC--------------------------CCCCCC------CCEEEccCCCCCCCCchhhhc-
Q 044980 147 RHLFFIVLSYNQFQGKIPST--------------------------LGNLTS------LKQIDLSHNQFNFTSPGWLSK- 193 (313)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~--------------------------~~~l~~------L~~L~l~~n~l~~~~p~~~~~- 193 (313)
++|++|++++|.+++..+.. +..+++ |+.|++++|.+++..+..+..
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 66666666666665443333 333332 677777777665554433322
Q ss_pred -------------------------------------CcccccccccccccccccccccccccccCCCcCEEEccCCCCC
Q 044980 194 -------------------------------------LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS 236 (313)
Q Consensus 194 -------------------------------------l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (313)
.++|+. |++++| .+....+..+..+++|+.|++++|.+.
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~--L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH--LDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE--EECTTC--CCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccE--EECCCC--cccccChhhhhcCCCCCEEECCCCcCC
Confidence 145666 677776 566667888899999999999999999
Q ss_pred CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 237 QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 237 ~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+..+..+..++ +|+.|++++|.+++. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 304 ~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 304 KIADEAFYGLD-----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECTTTTTTCS-----SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCChHHhcCCC-----CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88888888887 999999999998765 7889999999999999997777788899999999999999875
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=7.9e-25 Score=205.79 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcchh-hh
Q 044980 168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDISQV-LD 244 (313)
Q Consensus 168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~ 244 (313)
..+++|++|++++|.+++..|..+..+++|+. |++++| .+.+ .+|..++.+++|++|++++|.+.+.+|.. +.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT--LILQRN--GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE--EECCSS--CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCE--EECCCC--CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 45667777777777777767777777777777 777776 4443 23455667777777777777776634332 33
Q ss_pred hhc----------------cccc-cCccEEEccccccccc---ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeC
Q 044980 245 IFS----------------AYGT-YALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDL 303 (313)
Q Consensus 245 ~~~----------------~~~~-~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l 303 (313)
.++ .... ++|+.|++++|+++.. +..+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 333 0000 1455555555544432 334455555555555555 44443 555555555555
Q ss_pred CCCcCcc
Q 044980 304 SNNKFVT 310 (313)
Q Consensus 304 ~~n~l~~ 310 (313)
++|++++
T Consensus 505 ~~N~~~c 511 (562)
T 3a79_B 505 HDNPWDC 511 (562)
T ss_dssp CSCCBCC
T ss_pred cCCCcCC
Confidence 5555554
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.4e-23 Score=185.39 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=155.9
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+.+. +. +.++++|++|++++|.+ ..++.+.++++|++|++++|.+.+..+ +..+++|+
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i----~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~ 135 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKI----TDISALQNLTNLRELYLNEDNISDISP--LANLTKMY 135 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC----CCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcc----cCchHHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence 688999999999999864 43 88999999999999986 345789999999999999999987644 78888999
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccc--------------
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP-------------- 216 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~-------------- 216 (313)
+|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+. +++++| .+....+
T Consensus 136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~--L~l~~n--~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS--LSLNYN--QIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE--EECTTS--CCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE--EEccCC--cccccccccCCCccceeeccc
Confidence 99999996654443 36777888888888887764433 666777777 666666 2222111
Q ss_pred ------cccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccccc
Q 044980 217 ------TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSI 288 (313)
Q Consensus 217 ------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~i 288 (313)
..+..+++|++|++++|.+.+..+ +..++ +|+.|++++|.+++. +..+++|++|++++|.+++ +
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~ 280 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNNKITDLSP--LANLS-----QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-I 280 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCC-----CCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC-C
Confidence 114555666666666666665433 44444 677777777776655 6667777777777777773 4
Q ss_pred CccccCCCCCCEeeCCCCcCcc
Q 044980 289 PLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 289 p~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+ .+..+++|++|++++|++++
T Consensus 281 ~-~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 281 S-VLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp G-GGGGCTTCSEEECCSSCCCG
T ss_pred h-hhcCCCCCCEEECcCCcCCC
Confidence 3 46677778888888777765
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.3e-24 Score=196.29 Aligned_cols=218 Identities=17% Similarity=0.140 Sum_probs=182.2
Q ss_pred cCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc
Q 044980 79 DAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ 158 (313)
Q Consensus 79 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 158 (313)
+.++..++ .+|..+. ++|++|+|++|.+. ......|.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 60 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 60 VCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcC-ccCCCCC--CCccEEECcCCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 33344554 3665553 68999999999962 1112368899999999999999998888889999999999999999
Q ss_pred cCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980 159 FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238 (313)
Q Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (313)
+++..+..+..+++|++|++++|.+.+..+..+..+++|+. |++++|. .+...-+..+.++++|+.|++++|.+.+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR--LDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE--EECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE--EeCCCCC-CccccChhhccCCCCCCEEECCCCccccc
Confidence 99766677899999999999999999766778999999999 8888751 34444455688999999999999999864
Q ss_pred cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 239 ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 239 ~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
| .+..++ +|+.|++++|.+++. +..+++|+.|++++|++.+..+..+..+++|++|++++|++++.
T Consensus 212 -~-~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 212 -P-NLTPLV-----GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp -C-CCTTCT-----TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -c-cccccc-----cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 3 355666 999999999999876 88899999999999999988888999999999999999999863
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.6e-25 Score=188.59 Aligned_cols=216 Identities=23% Similarity=0.243 Sum_probs=182.1
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
.++..+++..+.+.... .+.++++|++|++++|.+ ..++.+..+++|++|++++|.+.+. + .+..+++|++|
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i----~~~~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L 90 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDI----KSVQGIQYLPNVRYLALGGNKLHDI-S-ALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCC----CCCTTGGGCTTCCEEECTTSCCCCC-G-GGTTCTTCCEE
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCc----ccccccccCCCCcEEECCCCCCCCc-h-hhcCCCCCCEE
Confidence 34455566666655433 356789999999999986 4556788999999999999999874 3 58899999999
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++ |++++| .+.+..+..++.+++|+.|++++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY--LNLAHN--QLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE--EECCCC--ccCccCHHHhccCccCCEEECCC
Confidence 99999999777777899999999999999999877777899999999 999999 67777777788999999999999
Q ss_pred CCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980 233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l 308 (313)
|.+.+..+..+..++ +|+.|++++|.+++. +..+++|+.|++++|.+.+. +++|+.++++.|.+
T Consensus 167 n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp SCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred CCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 999987777777777 999999999999876 67889999999999988743 55788999999998
Q ss_pred cccc
Q 044980 309 VTKK 312 (313)
Q Consensus 309 ~~~~ 312 (313)
+|.+
T Consensus 235 ~g~i 238 (272)
T 3rfs_A 235 SGVV 238 (272)
T ss_dssp GGGB
T ss_pred CCcc
Confidence 8865
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=5.7e-24 Score=194.09 Aligned_cols=218 Identities=17% Similarity=0.144 Sum_probs=182.3
Q ss_pred cCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc
Q 044980 79 DAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ 158 (313)
Q Consensus 79 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 158 (313)
+.++..++ .+|..+. +.+++|+|++|.+.. .....+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 49 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 49 ICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp ECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE--ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe--eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 33344554 4666554 689999999999621 122368899999999999999998888889999999999999999
Q ss_pred cCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980 159 FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238 (313)
Q Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (313)
++...+..|..+++|++|++++|.+....+..+..+++|+. |++++|. .+....+..+.++++|++|++++|.+...
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~--L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR--LDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE--EECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE--eCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc
Confidence 99666667999999999999999999777778999999999 8888851 34444455789999999999999999854
Q ss_pred cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 239 ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 239 ~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
| .+..++ +|+.|+|++|.+++. +..+++|+.|++++|++.+..+..|..+++|++|++++|++++.
T Consensus 201 -~-~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 201 -P-NLTPLI-----KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp -C-CCTTCS-----SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred -c-ccCCCc-----ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 4 355566 999999999998876 88899999999999999988888999999999999999999863
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.8e-23 Score=192.21 Aligned_cols=213 Identities=23% Similarity=0.292 Sum_probs=165.4
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
++++|+.|++++|.+.+. +.+.++++|++|++++|.+ . .++.+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l---~-~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI---S-DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC---C-CCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc---c-ccccccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 456777777777777653 2367777888888887775 2 233366778888888888887764 2467788888
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+. |++++| .+.+..+ ++.+++|+.|++
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~--L~L~~n--~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN--LELNEN--QLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE--EECCSS--CCSCCGG--GGGCTTCSEEEC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe--EEcCCC--cccCchh--hcCCCCCCEEEC
Confidence 88888888875433 7778888888888888875433 778888888 888888 5555433 778889999999
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l 308 (313)
++|.+.+..| +..++ +|+.|++++|.+++. +..+++|+.|++++|++++..| +..+++|++|++++|++
T Consensus 317 ~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 317 YFNNISDISP--VSSLT-----KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CSSCCSCCGG--GGGCT-----TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred cCCcCCCchh--hccCc-----cCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 9999887655 55666 899999999998877 7888999999999999997766 78899999999999988
Q ss_pred cc
Q 044980 309 VT 310 (313)
Q Consensus 309 ~~ 310 (313)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 76
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.4e-23 Score=192.11 Aligned_cols=185 Identities=17% Similarity=0.144 Sum_probs=86.9
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+++. | ++++++|++|++++|.+.. ++ +.++++|++|++++|.+++. + +..+++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~----~~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN----LD-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC----CC-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce----ee-cCCCCcCCEEECCCCcCCee-c--CCCCCcCC
Confidence 344455555555554442 2 4445555555555554311 12 44445555555555555442 2 44445555
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.+++ ++ +..+++|++|++++|...+.+ .+..+++|+. |++++| .+.+ +| ++.+++|+.|++
T Consensus 131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~--L~ls~n--~l~~-l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT--LDCSFN--KITE-LD--VSQNKLLNRLNC 198 (457)
T ss_dssp EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE--EECCSS--CCCC-CC--CTTCTTCCEEEC
T ss_pred EEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCE--EECCCC--ccce-ec--cccCCCCCEEEC
Confidence 55555555543 22 444455555555555433333 2444455555 555554 3332 22 444455555555
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccCCcccc
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~n~l~~ 286 (313)
++|.+++. .+..++ +|+.|++++|++++. +..+++|+.|++++|++++
T Consensus 199 ~~N~l~~~---~l~~l~-----~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 199 DTNNITKL---DLNQNI-----QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCSCC---CCTTCT-----TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred cCCcCCee---ccccCC-----CCCEEECcCCcccccCccccCCCCEEEeeCCcCCC
Confidence 55555443 133333 555555555555544 4445555555555555554
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-23 Score=180.16 Aligned_cols=174 Identities=22% Similarity=0.199 Sum_probs=98.9
Q ss_pred CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980 123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202 (313)
Q Consensus 123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L 202 (313)
+.+++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|++|++++|.+. .+|..+..+++|+. |
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~--L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV--L 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE--E
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCE--E
Confidence 3455555555555544444455555555555555555422 211 44555555555555554 34444455555555 5
Q ss_pred cccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEE
Q 044980 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLD 278 (313)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~ 278 (313)
++++| .+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++++. +..+++|+.|+
T Consensus 106 ~l~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 106 DVSFN--RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp ECCSS--CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred ECCCC--cCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-----CCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 55555 44444445555566666666666666655555555555 666666666666544 45566677777
Q ss_pred ccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+++|+++ .+|..+...++|+++++++|.+.
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7777776 66666666667777777777664
No 60
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.1e-25 Score=200.10 Aligned_cols=233 Identities=16% Similarity=0.173 Sum_probs=187.7
Q ss_pred CCCCcceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCCch-h-------hccCCCCCEEEcCCccCCC-
Q 044980 71 PFGYLKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDSLS-W-------LSSLLLLEHIDLGQVHLGK- 137 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~~~-~-------~~~l~~L~~L~l~~n~l~~- 137 (313)
.+++|+.|++++|.+....+ ..+.++++|++|+|++|.+....+.+| . +..+++|++|++++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 56789999999999987644 447789999999999987533333444 2 4688999999999999988
Q ss_pred ---CCchhhhhcCccCeeeccCcccCcCCCCC----CCCC---------CCCCEEEccCCCCC-CCCc---hhhhcCccc
Q 044980 138 ---ASDCWIYSLRHLFFIVLSYNQFQGKIPST----LGNL---------TSLKQIDLSHNQFN-FTSP---GWLSKLNEL 197 (313)
Q Consensus 138 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~L 197 (313)
.++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.++ +.++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 45667889999999999999987433332 3333 89999999999997 4445 467788999
Q ss_pred ccccccccccccccc--c---ccccccccCCCcCEEEccCCCCC----CCcchhhhhhccccccCccEEEccccccccc-
Q 044980 198 SSFLLNLVSCMVRFH--Q---LIPTSFIRLCKLTSIDFSSVKLS----QDISQVLDIFSAYGTYALVSLILSHCQISAA- 267 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~--~---~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~- 267 (313)
+. |++++| .+. + .++..+..+++|+.|++++|.+. ..+|..+..++ +|+.|+|++|.+++.
T Consensus 190 ~~--L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-----~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 190 HT--VKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----NLRELGLNDCLLSARG 260 (386)
T ss_dssp CE--EECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----TCCEEECTTCCCCHHH
T ss_pred CE--EECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----CcCEEECCCCCCchhh
Confidence 99 999998 444 2 35557889999999999999996 45666777777 999999999999865
Q ss_pred -------c--cCCCCCCEEEccCCcccc----ccCccc-cCCCCCCEeeCCCCcCcccc
Q 044980 268 -------L--GKLSSLRNLDFSLNMLNG----SIPLSL-GQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 268 -------~--~~~~~L~~L~l~~n~l~~----~ip~~l-~~l~~L~~L~l~~n~l~~~~ 312 (313)
+ ..+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3 448999999999999997 488877 56899999999999998753
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=180.46 Aligned_cols=186 Identities=21% Similarity=0.200 Sum_probs=142.3
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
++++|+.|++++|.+.+..+..+.++++|++|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--ccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 6889999999999999877778999999999999999962 11223688999999999999999987776788999999
Q ss_pred eeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccc--cccccccccccccccccccccCCCcCE
Q 044980 151 FIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF--LLNLVSCMVRFHQLIPTSFIRLCKLTS 227 (313)
Q Consensus 151 ~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~--~L~l~~n~~~~~~~~~~~~~~~~~L~~ 227 (313)
+|++++|.+++ .+|..+..+++|++|++++|.+++..+..+..+..++.+ .+++++| .+....+..+. ..+|+.
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~-~~~L~~ 204 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGAFK-EIRLKE 204 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTSSC-SCCEEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC--cccccCccccC-CCcccE
Confidence 99999999986 368899999999999999999997777777777766631 1566666 44443333333 336777
Q ss_pred EEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980 228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
|++++|.+++..+..+..++ +|+.|++++|.+.+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c 238 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLT-----SLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCC-----SCCEEECCSSCBCC
T ss_pred EECCCCceeecCHhHhcccc-----cccEEEccCCcccc
Confidence 77777777655544455555 66666666666654
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.5e-23 Score=188.94 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=129.6
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCC-----------------CCchhhccCCCCCEEEcCCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHV-----------------DSLSWLSSLLLLEHIDLGQV 133 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-----------------~~~~~~~~l~~L~~L~l~~n 133 (313)
.+++|+.|++++|.+.+..+ +.++++|++|++++|.+.... ..++.+.++++|++|++++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 56788888888887776432 667777777777776642110 01122445566666666666
Q ss_pred cCCCCCchhhhhcCccCeeeccCcccCcCCC--------------------CCCCCCCCCCEEEccCCCCCCCCchhhhc
Q 044980 134 HLGKASDCWIYSLRHLFFIVLSYNQFQGKIP--------------------STLGNLTSLKQIDLSHNQFNFTSPGWLSK 193 (313)
Q Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 193 (313)
.+.+.. .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+ +..
T Consensus 188 ~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 188 KVSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cCCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhc
Confidence 665432 25555666666666666553322 123344444444554444443322 444
Q ss_pred CcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCC
Q 044980 194 LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKL 271 (313)
Q Consensus 194 l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~ 271 (313)
+++|+. |++++| .+.+..+ +..+++|+.|++++|.+.+..+ +..++ +|+.|++++|++++. +..+
T Consensus 264 l~~L~~--L~l~~n--~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-----~L~~L~L~~n~l~~~~~~~~l 330 (466)
T 1o6v_A 264 LTKLTE--LKLGAN--QISNISP--LAGLTALTNLELNENQLEDISP--ISNLK-----NLTYLTLYFNNISDISPVSSL 330 (466)
T ss_dssp CTTCSE--EECCSS--CCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT-----TCSEEECCSSCCSCCGGGGGC
T ss_pred CCCCCE--EECCCC--ccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC-----CCCEEECcCCcCCCchhhccC
Confidence 555555 555554 3333222 5556666666666666665433 44444 777777777777665 5667
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 272 ~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
++|+.|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 7777777777777743 3567778888888888887764
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=201.32 Aligned_cols=228 Identities=20% Similarity=0.196 Sum_probs=181.0
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCC------------------CCCCchhhccCCCCCEEEcCCc
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRL------------------HVDSLSWLSSLLLLEHIDLGQV 133 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~------------------~~~~~~~~~~l~~L~~L~l~~n 133 (313)
+++|+.|++++|.+. .+|..+..+ .|++|++++|.+.. ....++ ...+++|++|++++|
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRN 357 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSS
T ss_pred cCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc-cccCCCCCEEeCcCC
Confidence 456666666666555 345445444 55555555554310 011111 256789999999999
Q ss_pred cCCCCC--chhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccc
Q 044980 134 HLGKAS--DCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVR 210 (313)
Q Consensus 134 ~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~ 210 (313)
.+++.. +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..| ..+..+++|++ +++++| .
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~ 432 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--H 432 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE--EECTTS--C
T ss_pred ccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE--EeCcCC--c
Confidence 887654 66788999999999999999854 4448899999999999999887665 56888999999 999998 7
Q ss_pred cccccccccccCCCcCEEEccCCCCC-CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980 211 FHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~ 285 (313)
+.+..|..+..+++|++|++++|.+. +.+|..+..++ +|+.|++++|++++. +..+++|++|++++|+++
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-----CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 77778889999999999999999997 56787788888 999999999999876 778899999999999999
Q ss_pred cccCccccCCCCCCEeeCCCCcCcccc
Q 044980 286 GSIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 286 ~~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
+..|..+..+++|++|++++|+++++.
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCC
Confidence 877778899999999999999998864
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=190.06 Aligned_cols=207 Identities=18% Similarity=0.200 Sum_probs=173.8
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCc-hhhhhcCc
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASD-CWIYSLRH 148 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 148 (313)
++++|+.|++++|.+++..+..+.++++|++|++++|.+ ....+ .+.++++|++|++++|.+....+ ..+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 689999999999999988888899999999999999996 23333 48899999999999999987654 46889999
Q ss_pred cCeeeccCc-ccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980 149 LFFIVLSYN-QFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS 227 (313)
Q Consensus 149 L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 227 (313)
|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++ +++++| .+....+..+..+++|+.
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~--L~l~~n--~l~~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH--LILHMK--QHILLLEIFVDVTSSVEC 226 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE--EEEECS--CSTTHHHHHHHHTTTEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe--ecCCCC--ccccchhhhhhhcccccE
Confidence 999999999 466666778999999999999999999888999999999999 999998 444433334556889999
Q ss_pred EEccCCCCCCCc-------------------------------chhhhhhccccccCccEEEccccccccc----ccCCC
Q 044980 228 IDFSSVKLSQDI-------------------------------SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLS 272 (313)
Q Consensus 228 L~l~~n~l~~~~-------------------------------~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~ 272 (313)
|++++|.+.+.. |..+..++ +|+.|++++|+++.. +..++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-----GLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-----CCCEEECCCCCCCccCHHHHhcCC
Confidence 999999988743 33445555 999999999999866 57899
Q ss_pred CCCEEEccCCccccccC
Q 044980 273 SLRNLDFSLNMLNGSIP 289 (313)
Q Consensus 273 ~L~~L~l~~n~l~~~ip 289 (313)
+|++|++++|.+.+..|
T Consensus 302 ~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred CCCEEEeeCCCccCcCC
Confidence 99999999999997654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=6.4e-24 Score=185.49 Aligned_cols=214 Identities=19% Similarity=0.109 Sum_probs=179.1
Q ss_pred CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
.++..+++.+.+....+..+..+++|++|++++|.+ ....+ .+.++++|++|++++|.+++..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC---CCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCcc---CcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 355667777777655555566788999999999996 33343 78999999999999999987665 8899999999
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|.+++. + ..++|++|++++|.+++..+. .+++|+. +++++| .+....+..++.+++|++|++++
T Consensus 86 ~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~--L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 86 DLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKN--IYLANN--KITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp ECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEE--EECCSS--CCCSGGGBCTGGGSSEEEEECTT
T ss_pred ECcCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCE--EECCCC--CCCCccchhhhccCCCCEEECCC
Confidence 9999999843 3 348999999999999865443 3678999 999999 77777788899999999999999
Q ss_pred CCCCCCcchhhh-hhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 233 VKLSQDISQVLD-IFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 233 n~l~~~~~~~l~-~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
|.+.+..+..+. .++ +|+.|++++|.+++. ...+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 154 N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 154 NEIDTVNFAELAASSD-----TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp SCCCEEEGGGGGGGTT-----TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCcccHHHHhhccC-----cCCEEECCCCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence 999987766654 566 899999999999887 556899999999999999 57777999999999999999987
Q ss_pred c
Q 044980 310 T 310 (313)
Q Consensus 310 ~ 310 (313)
+
T Consensus 228 ~ 228 (317)
T 3o53_A 228 L 228 (317)
T ss_dssp E
T ss_pred c
Confidence 5
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=194.75 Aligned_cols=161 Identities=20% Similarity=0.158 Sum_probs=102.8
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (313)
++++.|++++|.+++..+.+|.++++|++|++++|.+ .+..+ .+.++++|++|++++|.+++..|..+..+++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcC---CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 3566677777777666566667777777777777764 11112 4666777777777777766665566667777777
Q ss_pred eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC-CCchhhhcCcccccccccccccccccccccccccccCCCc----C
Q 044980 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF-TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL----T 226 (313)
Q Consensus 152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L----~ 226 (313)
|++++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++ |++++| .+....+..++.+.+| +
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSN--KIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE--EECTTS--CCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE--EeCcCC--ccceecHHHccchhccchhhh
Confidence 7777777664444456667777777777777665 35666777777777 666666 4555555556666555 5
Q ss_pred EEEccCCCCCCCcc
Q 044980 227 SIDFSSVKLSQDIS 240 (313)
Q Consensus 227 ~L~l~~n~l~~~~~ 240 (313)
.+++++|.+.+..+
T Consensus 181 ~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 181 SLDLSLNPMNFIQP 194 (570)
T ss_dssp EEECTTCCCCEECT
T ss_pred hcccCCCCceecCH
Confidence 66666666654433
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=172.51 Aligned_cols=203 Identities=18% Similarity=0.164 Sum_probs=166.1
Q ss_pred ccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEE
Q 044980 50 KWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHI 128 (313)
Q Consensus 50 ~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L 128 (313)
.|..+.|... .++.+.. .-.++++.|++++|.+.+..+..|.++++|++|++++|.+. ...+ .+.++++|++|
T Consensus 17 ~~~~l~~~~~--~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSK--KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTS--CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCC--CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEE
Confidence 4677888642 2332221 12357999999999998777778999999999999999862 2222 46789999999
Q ss_pred EcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc
Q 044980 129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208 (313)
Q Consensus 129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~ 208 (313)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+. |++++|
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~n- 167 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE--LRLYNN- 167 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS-
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce--eEecCC-
Confidence 99999999877777889999999999999999777778889999999999999998766667889999999 999998
Q ss_pred cccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267 (313)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 267 (313)
.+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+...
T Consensus 168 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 168 -QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-----KLKMLQLQENPWDCT 220 (270)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCBCCS
T ss_pred -cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-----CCCEEEecCCCeeCC
Confidence 67766667788999999999999999977666677777 899999999987653
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.8e-22 Score=184.73 Aligned_cols=207 Identities=21% Similarity=0.198 Sum_probs=122.2
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|++++|.+++. + ++++++|++|++++|.+. .++ +..+++|++|++++|.+++. + +..+++|+
T Consensus 83 ~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~----~l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~ 151 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT----KLD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLT 151 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS----CCC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCC
T ss_pred cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC----eec-CCCCCcCCEEECCCCcccee-c--cccCCcCC
Confidence 456666677766666653 2 566666777777666641 123 55666677777776666653 2 55666667
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+. +++++| .+.+. .++.+++|+.|++
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~--L~l~~N--~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR--LNCDTN--NITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE--EECCSS--CCSCC---CCTTCTTCSEEEC
T ss_pred EEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE--EECcCC--cCCee---ccccCCCCCEEEC
Confidence 7777666544444 35566667777777766664 33 556666666 666666 33332 2556666677777
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCC----------CEEEccCCccccccCccccCCCCCC
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSL----------RNLDFSLNMLNGSIPLSLGQISHLE 299 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L----------~~L~l~~n~l~~~ip~~l~~l~~L~ 299 (313)
++|.+.+ +| +..++ +|+.|++++|++++. +..+++| +.|++++|.+.+.+| +..+++|+
T Consensus 220 s~N~l~~-ip--~~~l~-----~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 220 SSNKLTE-ID--VTPLT-----QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CSSCCSC-CC--CTTCT-----TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred cCCcccc-cC--ccccC-----CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence 7776665 33 44444 666777776666655 3333333 334444444444444 34556666
Q ss_pred EeeCCCCcCcc
Q 044980 300 YLDLSNNKFVT 310 (313)
Q Consensus 300 ~L~l~~n~l~~ 310 (313)
.|++++|...|
T Consensus 290 ~L~Ls~n~~l~ 300 (457)
T 3bz5_A 290 ELDVTHNTQLY 300 (457)
T ss_dssp CCCCTTCTTCC
T ss_pred EEECCCCcccc
Confidence 77776666544
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5e-23 Score=179.12 Aligned_cols=190 Identities=23% Similarity=0.247 Sum_probs=124.9
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+++|+.|+++++.+.. ++ .+..+++|++|++++|.+ ..++.+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i----~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQI----TDLAPLKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC----CCCGGGTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcC----CCChhHccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 45667777777777664 33 466777777777777775 2233366777777777777777654 2 366777777
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|+. |++++| .+... +. +..+++|+.|++
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~--L~l~~n--~l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY--LSIGNA--QVSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE--EECCSS--CCCCC-GG-GTTCTTCCEEEC
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccE--EEccCC--cCCCC-hh-hcCCCCCCEEEC
Confidence 77777777764 333 6677777777777777764332 666777777 777776 44432 22 666777777777
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~ 285 (313)
++|.+.+..+ +..++ +|+.|++++|++++. +..+++|+.|++++|.++
T Consensus 181 ~~n~l~~~~~--l~~l~-----~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP--LASLP-----NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG--GGGCT-----TCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh--hcCCC-----CCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 7777765433 45555 677777777777665 666677777777777776
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.5e-23 Score=192.06 Aligned_cols=193 Identities=20% Similarity=0.124 Sum_probs=167.2
Q ss_pred CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 173 (313)
.+++|++|+|++|.+ ....| .+..+++|++|++++|.+++..| +..+++|++|++++|.+++. | ..++|
T Consensus 32 ~~~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCC---CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTC
T ss_pred cCCCccEEEeeCCcC---CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCc
Confidence 445899999999996 33333 78999999999999999988766 88999999999999999843 3 23899
Q ss_pred CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh-hhcccccc
Q 044980 174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD-IFSAYGTY 252 (313)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~~~~~ 252 (313)
++|++++|.+++..+. .+++|+. |++++| .+.+..|..++.+++|+.|++++|.+.+..|..+. .++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~----- 169 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKN--IYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD----- 169 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEE--EECCSS--CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-----
T ss_pred CEEECcCCcCCCCCcc---ccCCCCE--EECCCC--CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-----
Confidence 9999999999876553 4678999 999999 78888888999999999999999999998887775 567
Q ss_pred CccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 253 ALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+|+.|+|++|.+++. ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence 999999999999987 5568999999999999995 66668999999999999999986
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.4e-22 Score=168.71 Aligned_cols=190 Identities=21% Similarity=0.228 Sum_probs=108.9
Q ss_pred CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCC
Q 044980 47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLL 125 (313)
Q Consensus 47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L 125 (313)
+|+.|.|..|.. . .+.++++++.++ .+|..+. +.|++|+|++|.+ .+..+ .+.++++|
T Consensus 3 ~Cp~~~gC~C~~---~------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l---~~~~~~~~~~l~~L 61 (251)
T 3m19_A 3 TCETVTGCTCNE---G------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGL---ATLSDATFRGLTKL 61 (251)
T ss_dssp -CHHHHSSEEEG---G------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCC---CCCCTTTTTTCTTC
T ss_pred cCCCCCceEcCC---C------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCc---CccCHhHhcCcccC
Confidence 577888888842 1 122333334444 2444333 4566666666664 12222 45566666
Q ss_pred CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980 126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205 (313)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~ 205 (313)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++ |+++
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls 139 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE--LRLN 139 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECC
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE--EECc
Confidence 66666666666655555566666666666666666444455566666666666666666544444556666666 6666
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~ 266 (313)
+| .+....+..++.+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+
T Consensus 140 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c 193 (251)
T 3m19_A 140 TN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-----KLQTITLFGNQFDC 193 (251)
T ss_dssp SS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSCCBCT
T ss_pred CC--cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC-----CCCEEEeeCCceeC
Confidence 66 44444444566666666666666666655554555555 66666666666544
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=179.69 Aligned_cols=226 Identities=19% Similarity=0.133 Sum_probs=169.3
Q ss_pred cceecCCCCcccccccc---cccCCCCCcEeeccCCCCCCCCCCch-hh--ccCCCCCEEEcCCccCCCCCc----hhhh
Q 044980 75 LKYSDAEDDDHYMRSKL---VVGNLSNLQYLDLSWIDCRLHVDSLS-WL--SSLLLLEHIDLGQVHLGKASD----CWIY 144 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n~~~~~~~~~~-~~--~~l~~L~~L~l~~n~l~~~~~----~~~~ 144 (313)
++.+.+..+.+....-. .+..+++|++|++++|.+ .+..| .+ ..+++|++|++++|.+++..+ ..+.
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI---TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC---BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe---ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45555555555422111 122356799999999986 33343 44 789999999999999987554 2345
Q ss_pred hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCC--Cc--hhhhcCcccccccccccccccccccc--ccc-
Q 044980 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT--SP--GWLSKLNELSSFLLNLVSCMVRFHQL--IPT- 217 (313)
Q Consensus 145 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~~~L~l~~n~~~~~~~--~~~- 217 (313)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..+++|++ |++++| .+... .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~--L~Ls~N--~l~~l~~~~~~ 218 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN--LALRNT--GMETPTGVCAA 218 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS--CBCCSS--CCCCHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE--EECCCC--CCCchHHHHHH
Confidence 688999999999999988888899999999999999997642 21 22467889999 999998 44321 222
Q ss_pred ccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccCCccccccCccccCCC
Q 044980 218 SFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSLNMLNGSIPLSLGQIS 296 (313)
Q Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~ 296 (313)
.++.+++|++|++++|.+.+..|..+..+. ..++|+.|++++|+++.. ..-.++|++|++++|++++ +|. +..++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~-~~~l~ 294 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCM--WSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-APQ-PDELP 294 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCC--CCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-CCC-TTSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhcc--CcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-Cch-hhhCC
Confidence 357789999999999999988777666552 112899999999999865 2224799999999999994 454 67889
Q ss_pred CCCEeeCCCCcCccc
Q 044980 297 HLEYLDLSNNKFVTK 311 (313)
Q Consensus 297 ~L~~L~l~~n~l~~~ 311 (313)
+|++|++++|+++..
T Consensus 295 ~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 295 EVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCSCEECSSTTTSCC
T ss_pred CccEEECcCCCCCCC
Confidence 999999999999753
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.3e-22 Score=171.08 Aligned_cols=178 Identities=19% Similarity=0.148 Sum_probs=96.9
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
++++.|++++|.+.+..+..+.++++|++|++++|.+ ..++....+++|++|++++|.+.. +|..+..+++|++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC----CEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc----CcccCCCCCCcCCEEECCCCcCCc-CchhhccCCCCCEE
Confidence 4555666666666555555555666666666666654 122323455566666666665553 23344555556666
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+. |++++| .+....+..+..+++|+.|++++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK--LSLANN--NLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECTTS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE--EECCCC--cCCccCHHHhcCcCCCCEEECCC
Confidence 66666665444455555666666666666665444444555556666 555555 44443334445555666666666
Q ss_pred CCCCCCcchhhhhhccccccCccEEEccccccc
Q 044980 233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQIS 265 (313)
Q Consensus 233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~ 265 (313)
|.+. .+|..+.... +|+.+++++|.+.
T Consensus 182 N~l~-~ip~~~~~~~-----~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSH-----LLPFAFLHGNPWL 208 (290)
T ss_dssp SCCC-CCCTTTTTTC-----CCSEEECCSCCBC
T ss_pred CcCC-ccChhhcccc-----cCCeEEeCCCCcc
Confidence 6655 3344444444 5556666655554
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.8e-24 Score=189.03 Aligned_cols=251 Identities=20% Similarity=0.169 Sum_probs=190.2
Q ss_pred CCcccCceEecCCCCCEEEEecCC---------CC--CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCC
Q 044980 47 DCCKWVGNFCNNLTGHILELNLEN---------PF--GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS 115 (313)
Q Consensus 47 ~~c~~~~v~c~~~~~~v~~l~l~~---------~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 115 (313)
-|.+|.++.++ ...++.+++++ .+ ++++.|++++|.+.+..+. +.++++|++|++++|.+ ....
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l--~~~~ 109 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI--EVST 109 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE--CHHH
T ss_pred HHHHHHHHhcC--chhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc--CHHH
Confidence 44567777664 23455666665 22 7899999999998887665 56789999999999985 2222
Q ss_pred ch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCc-ccCcC-CCCCCCCCCCCCEEEccCC-CCCCC-Cchh
Q 044980 116 LS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYN-QFQGK-IPSTLGNLTSLKQIDLSHN-QFNFT-SPGW 190 (313)
Q Consensus 116 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~ 190 (313)
++ .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 44 5778999999999999988877888888999999999999 67642 5666778899999999999 88754 5677
Q ss_pred hhcCc-ccccccccccccccccc-cccccccccCCCcCEEEccCCC-CCCCcchhhhhhccccccCccEEEccccc-ccc
Q 044980 191 LSKLN-ELSSFLLNLVSCMVRFH-QLIPTSFIRLCKLTSIDFSSVK-LSQDISQVLDIFSAYGTYALVSLILSHCQ-ISA 266 (313)
Q Consensus 191 ~~~l~-~L~~~~L~l~~n~~~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~ 266 (313)
+..++ +|++ |++++|...+. ..++..+..+++|+.|++++|. +++..+..+..++ +|+.|++++|. ++.
T Consensus 190 ~~~l~~~L~~--L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-----~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 190 VAHVSETITQ--LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-----YLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHSCTTCCE--EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-----TCCEEECTTCTTCCG
T ss_pred HHhcccCCCE--EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-----CCCEeeCCCCCCCCH
Confidence 88888 9999 88888732222 4467778889999999999999 7777777777777 99999999994 544
Q ss_pred c----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980 267 A----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK 312 (313)
Q Consensus 267 ~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~ 312 (313)
. +..+++|+.|++++| ++...-..+. .++..|++++|.+++..
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcccc
Confidence 3 778899999999998 4432222221 24667778999998754
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=178.01 Aligned_cols=202 Identities=19% Similarity=0.112 Sum_probs=168.0
Q ss_pred CCCcceecCCCCcccccccccc--cCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVV--GNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLR 147 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 147 (313)
+++|+.|++++|.+.+..|..+ .++++|++|++++|.+......++ .+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999999999999888 899999999999999732211122 345799999999999999988888889999
Q ss_pred ccCeeeccCcccCcC--C--CCCCCCCCCCCEEEccCCCCCCCCch----hhhcCccccccccccccccccccccccccc
Q 044980 148 HLFFIVLSYNQFQGK--I--PSTLGNLTSLKQIDLSHNQFNFTSPG----WLSKLNELSSFLLNLVSCMVRFHQLIPTSF 219 (313)
Q Consensus 148 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~ 219 (313)
+|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .+..+++|++ |++++| .+.+..|..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~--L~Ls~N--~l~~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS--LDLSHN--SLRATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS--EECTTS--CCCCCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE--EECCCC--CCCccchhhH
Confidence 999999999997642 2 233468899999999999997 3333 3578899999 999999 7777778777
Q ss_pred ccC---CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980 220 IRL---CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 220 ~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~ 286 (313)
..+ ++|++|++++|.++ .+|..+. + +|+.|++++|++++. +..+++|+.|++++|.+++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-----~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--A-----KLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--S-----CCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--C-----CCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 776 69999999999999 5565543 4 899999999999985 7788999999999999874
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.5e-23 Score=186.47 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=171.4
Q ss_pred CCCcceecCCCCccccccc----ccccCCC-CCcEeeccCCCCCCCCCCchhhccC-----CCCCEEEcCCccCCCCCch
Q 044980 72 FGYLKYSDAEDDDHYMRSK----LVVGNLS-NLQYLDLSWIDCRLHVDSLSWLSSL-----LLLEHIDLGQVHLGKASDC 141 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~ 141 (313)
.++|+.|++++|.+++..+ ..+.+++ +|++|+|++|.+ .......+..+ ++|++|++++|.+++..+.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4559999999999987766 6677888 899999999986 22223344443 8999999999999887776
Q ss_pred hhhhc-----CccCeeeccCcccCcCCCCCC----CC-CCCCCEEEccCCCCCCCCch----hhhcCc-ccccccccccc
Q 044980 142 WIYSL-----RHLFFIVLSYNQFQGKIPSTL----GN-LTSLKQIDLSHNQFNFTSPG----WLSKLN-ELSSFLLNLVS 206 (313)
Q Consensus 142 ~~~~l-----~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~p~----~~~~l~-~L~~~~L~l~~ 206 (313)
.+... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+. .+...+ +|++ |++++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS--LNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE--EECTT
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE--eeecC
Confidence 55444 789999999999986554333 33 36899999999998865443 344554 8999 99999
Q ss_pred cccccccccccc----cccC-CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCC
Q 044980 207 CMVRFHQLIPTS----FIRL-CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSS 273 (313)
Q Consensus 207 n~~~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~ 273 (313)
| .+....+.. +..+ ++|++|++++|.+.+.....+...-....++|+.|++++|.+++. +..+++
T Consensus 177 n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 177 N--NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp S--CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred C--CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 8 555554443 3444 589999999999987543333221111122799999999999875 467789
Q ss_pred CCEEEccCCcccc-------ccCccccCCCCCCEeeCCCCcCccc
Q 044980 274 LRNLDFSLNMLNG-------SIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 274 L~~L~l~~n~l~~-------~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
|++|++++|.+.+ .++..+..+++|++||+++|++.+.
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9999999998442 3444677888899999999998764
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=9.5e-23 Score=192.47 Aligned_cols=205 Identities=20% Similarity=0.142 Sum_probs=120.3
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
++|+.|++++|.++. +|. .+++|++|+|++|.+. .+|. .+++|++|++++|.+++..+ .+++|++|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~----~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT----SLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS----CCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC----cCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEE
Confidence 456677777766663 443 3566666666666642 2222 44555566665555554321 33444444
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch---hh--------------hcCccccccccccccccccccccc
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG---WL--------------SKLNELSSFLLNLVSCMVRFHQLI 215 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~---~~--------------~~l~~L~~~~L~l~~n~~~~~~~~ 215 (313)
++++|.++ .+|.. +++|++|++++|.+++ +|. .+ ..+++|+. |++++| .+.+ +
T Consensus 127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~--L~Ls~N--~l~~-l 196 (622)
T 3g06_A 127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQE--LSVSDN--QLAS-L 196 (622)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCE--EECCSS--CCSC-C
T ss_pred ECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcE--EECCCC--CCCC-C
Confidence 44444444 23321 2344444444444432 111 11 11244444 445444 2221 1
Q ss_pred cccc-----------------ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEE
Q 044980 216 PTSF-----------------IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLD 278 (313)
Q Consensus 216 ~~~~-----------------~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~ 278 (313)
|..+ ..+++|+.|++++|.+++ +| ..++ +|+.|++++|.+++.-..+++|+.|+
T Consensus 197 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~-----~L~~L~Ls~N~L~~lp~~~~~L~~L~ 267 (622)
T 3g06_A 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPS-----ELKELMVSGNRLTSLPMLPSGLLSLS 267 (622)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCT-----TCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCC-----cCcEEECCCCCCCcCCcccccCcEEe
Confidence 1110 112567777777777775 33 2223 78899999998887644678999999
Q ss_pred ccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
+++|.++ .+|..+..+++|+.|++++|.++|.
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 9999999 8999999999999999999999874
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=164.62 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=121.8
Q ss_pred CCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCE
Q 044980 97 SNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQ 175 (313)
Q Consensus 97 ~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 175 (313)
...++++++++.+. .+| .+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l~----~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLD----SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCS----SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCcc----ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 34677888887752 233 222 57888888888888777777788888888888888888766777788888888
Q ss_pred EEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCcc
Q 044980 176 IDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV 255 (313)
Q Consensus 176 L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 255 (313)
|++++|.+++..+..+..+++|++ |++++| .+....+..+..+++|++|++++|.+.+..+..+..++ +|+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~ 158 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDK--LYLGGN--QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----NLQ 158 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred EECCCCcccccChhHhcccCCCCE--EEcCCC--cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----CCC
Confidence 888888887666666677777777 777776 55555555566677777777777777665554555555 666
Q ss_pred EEEccccccccc----ccCCCCCCEEEccCCccccc
Q 044980 256 SLILSHCQISAA----LGKLSSLRNLDFSLNMLNGS 287 (313)
Q Consensus 256 ~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ 287 (313)
.|++++|++++. +..+++|+.|++++|.+.+.
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666666666544 45556666666666666543
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.6e-21 Score=169.60 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=118.6
Q ss_pred cCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980 94 GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173 (313)
Q Consensus 94 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 173 (313)
.++++|++|++++|.+ ..++.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i----~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV----TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HHcCCcCEEEeeCCCc----cCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 3456667777766664 224456666677777777776665443 6666667777777776663 22 45666667
Q ss_pred CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC
Q 044980 174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA 253 (313)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~ 253 (313)
++|++++|.+++ ++. +..+++|+. |++++| .+....+ ++.+++|+.|++++|.+.+..+ +..++ +
T Consensus 110 ~~L~l~~n~l~~-~~~-l~~l~~L~~--L~l~~n--~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~ 174 (308)
T 1h6u_A 110 KTLDLTSTQITD-VTP-LAGLSNLQV--LYLDLN--QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS-----K 174 (308)
T ss_dssp CEEECTTSCCCC-CGG-GTTCTTCCE--EECCSS--CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----T
T ss_pred CEEECCCCCCCC-chh-hcCCCCCCE--EECCCC--ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC-----C
Confidence 777777776664 232 666666766 666666 3333222 5666667777777776665332 45555 6
Q ss_pred ccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 254 LVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 254 L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
|+.|++++|.+++. +..+++|++|++++|++.+. +. +..+++|++|++++|++++
T Consensus 175 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC-GG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc-cc-ccCCCCCCEEEccCCeeec
Confidence 77777777766655 55666677777777776633 32 5666677777777766654
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.1e-22 Score=180.86 Aligned_cols=227 Identities=18% Similarity=0.136 Sum_probs=177.5
Q ss_pred eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc----hhhccCC-CCCEEEcCCccCCCCCchhhhhc-----
Q 044980 77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL----SWLSSLL-LLEHIDLGQVHLGKASDCWIYSL----- 146 (313)
Q Consensus 77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l----- 146 (313)
.+.++.|.+++.+|..+...++|++|+|++|.+ ..... ..+.+++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 356788999999998777777899999999997 22222 3577788 89999999999998888777776
Q ss_pred CccCeeeccCcccCcCCCCC----CCCC-CCCCEEEccCCCCCCCCchhhhc-----Cccccccccccccccccccc---
Q 044980 147 RHLFFIVLSYNQFQGKIPST----LGNL-TSLKQIDLSHNQFNFTSPGWLSK-----LNELSSFLLNLVSCMVRFHQ--- 213 (313)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~~~L~l~~n~~~~~~--- 213 (313)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .++|++ |++++| .+..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--L~Ls~N--~l~~~~~ 155 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS--LNLRGN--DLGIKSS 155 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE--EECTTS--CGGGSCH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE--EEccCC--cCCHHHH
Confidence 89999999999998665553 3344 89999999999998776655543 369999 999998 4443
Q ss_pred -ccccccccCC-CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccC-CCCCCEEEccCC
Q 044980 214 -LIPTSFIRLC-KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGK-LSSLRNLDFSLN 282 (313)
Q Consensus 214 -~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~-~~~L~~L~l~~n 282 (313)
.++..+.... +|++|++++|.+.+..+..+...-....++|+.|++++|.+++. +.. .++|++|++++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 3455556665 89999999999998877766655211112899999999999883 433 469999999999
Q ss_pred ccccccC----ccccCCCCCCEeeCCCCcCc
Q 044980 283 MLNGSIP----LSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 283 ~l~~~ip----~~l~~l~~L~~L~l~~n~l~ 309 (313)
.+.+..+ ..+..+++|++|++++|.+.
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 9986443 34567899999999999843
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.1e-22 Score=177.12 Aligned_cols=223 Identities=21% Similarity=0.225 Sum_probs=181.4
Q ss_pred CCcceecCCCCcccccccccccCC--CCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCC-CchhhhhcCcc
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNL--SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKA-SDCWIYSLRHL 149 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 149 (313)
..++.++++++.+. +..+..+ +.++.|++++|.+ .+..+.+..+++|++|++++|.+++. .+..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE---CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccc---cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 45889999998876 4556666 8999999999986 44455577899999999999998865 67778899999
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCC-CCCC-CCchhhhcCccccccccccccccccccc-ccccccccCC-Cc
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN-QFNF-TSPGWLSKLNELSSFLLNLVSCMVRFHQ-LIPTSFIRLC-KL 225 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~~~L~l~~n~~~~~~-~~~~~~~~~~-~L 225 (313)
++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++ |++++|. .+.. .++..+..++ +|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~--L~l~~~~-~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE--LNLSWCF-DFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE--EECCCCT-TCCHHHHHHHHHHSCTTC
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE--EcCCCCC-CcChHHHHHHHHhcccCC
Confidence 99999999998778888889999999999999 5765 36677889999999 8888871 1222 2567788899 99
Q ss_pred CEEEccCC--CCC-CCcchhhhhhccccccCccEEEccccc-cccc----ccCCCCCCEEEccCCc-cccccCccccCCC
Q 044980 226 TSIDFSSV--KLS-QDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKLSSLRNLDFSLNM-LNGSIPLSLGQIS 296 (313)
Q Consensus 226 ~~L~l~~n--~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~~~L~~L~l~~n~-l~~~ip~~l~~l~ 296 (313)
++|++++| .++ +.++..+..++ +|+.|++++|. +++. +..+++|++|++++|. +.......+..++
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCP-----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCT-----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCC-----CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 99999999 565 45566677777 99999999999 6654 7788999999999995 4433334678899
Q ss_pred CCCEeeCCCCcCcc
Q 044980 297 HLEYLDLSNNKFVT 310 (313)
Q Consensus 297 ~L~~L~l~~n~l~~ 310 (313)
+|++|++++| ++.
T Consensus 273 ~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 273 TLKTLQVFGI-VPD 285 (336)
T ss_dssp TCCEEECTTS-SCT
T ss_pred CCCEEeccCc-cCH
Confidence 9999999999 654
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.5e-21 Score=178.45 Aligned_cols=208 Identities=19% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCCcceecCCCCcccccccccccCCCCC-------------cEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNL-------------QYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGK 137 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------------~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 137 (313)
++++|+.|++++|.+.+.+|..++++.+| ++|++++|.+.. +|.+ .++|++|++++|.+++
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~----lp~~--~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS----LPEL--PPHLESLVASCNSLTE 105 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC----CCSC--CTTCSEEECCSSCCSS
T ss_pred cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc----CCCC--cCCCCEEEccCCcCCc
Confidence 66777777777777777777777766543 667777666421 2211 2455555555555554
Q ss_pred CCchhh----------------hh-cCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccc
Q 044980 138 ASDCWI----------------YS-LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF 200 (313)
Q Consensus 138 ~~~~~~----------------~~-l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~ 200 (313)
+|..+ .. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++
T Consensus 106 -lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~- 177 (454)
T 1jl5_A 106 -LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEF- 177 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCE-
T ss_pred -cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccE-
Confidence 22211 00 1345555555555543 44 35555555555555555543 3322 134555
Q ss_pred cccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEE
Q 044980 201 LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLD 278 (313)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~ 278 (313)
+++++| .+.+ +| .++++++|++|++++|.+.+ +|... . +|+.|++++|.++.. +..+++|++|+
T Consensus 178 -L~L~~n--~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~-----~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 243 (454)
T 1jl5_A 178 -IAAGNN--QLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L-----SLESIVAGNNILEELPELQNLPFLTTIY 243 (454)
T ss_dssp -EECCSS--CCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T-----TCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred -EECcCC--cCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C-----cccEEECcCCcCCcccccCCCCCCCEEE
Confidence 555554 3333 33 35555555555555555554 22111 1 456666666655533 55556666666
Q ss_pred ccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+++|+++ .+|.. .++|++|++++|++++
T Consensus 244 l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 244 ADNNLLK-TLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCS-SCCSC---CTTCCEEECCSSCCSC
T ss_pred CCCCcCC-ccccc---ccccCEEECCCCcccc
Confidence 6666665 34432 2455555555555543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.1e-21 Score=164.29 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=109.4
Q ss_pred CcceecCCCCcccccccccccCCCCCcEeeccCCC-CCCCCCCch--hhccCCCCCEEEcCC-ccCCCCCchhhhhcCcc
Q 044980 74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWID-CRLHVDSLS--WLSSLLLLEHIDLGQ-VHLGKASDCWIYSLRHL 149 (313)
Q Consensus 74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~--~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 149 (313)
+|+.|++++|.+++..+..+.++++|++|++++|. + ..++ .+.++++|++|++++ |.+++..+..+..+++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 45556666666555444455555666666665554 3 1121 344555555555555 55554444444455555
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCC---EEEccCC-CCCCCCchhhhcCcccccccccccccccccccccccccccCCCc
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLK---QIDLSHN-QFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL 225 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L 225 (313)
++|++++|.+++ +|. +..+++|+ +|++++| .+++. .+..+..+++|
T Consensus 108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i----------------------------~~~~~~~l~~L 157 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI----------------------------PVNAFQGLCNE 157 (239)
T ss_dssp CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE----------------------------CTTTTTTTBSS
T ss_pred CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhc----------------------------Ccccccchhcc
Confidence 555555555552 343 44444444 5555555 44322 23345556667
Q ss_pred C-EEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCC-CCCCEEEccCCccccccCccccCCCCC
Q 044980 226 T-SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKL-SSLRNLDFSLNMLNGSIPLSLGQISHL 298 (313)
Q Consensus 226 ~-~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~-~~L~~L~l~~n~l~~~ip~~l~~l~~L 298 (313)
+ .|++++|.+. .+|......+ +|+.|++++|+ +++. +..+ ++|+.|++++|+++ .+|.. .+++|
T Consensus 158 ~~~L~l~~n~l~-~i~~~~~~~~-----~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L 228 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQGYAFNGT-----KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHL 228 (239)
T ss_dssp EEEEECCSCCCC-EECTTTTTTC-----EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTC
T ss_pred eeEEEcCCCCCc-ccCHhhcCCC-----CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccC
Confidence 7 7777777766 3343322224 67788888774 6544 6667 78888888888888 56654 67788
Q ss_pred CEeeCCCC
Q 044980 299 EYLDLSNN 306 (313)
Q Consensus 299 ~~L~l~~n 306 (313)
+.|+++++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 88888775
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.3e-21 Score=162.37 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=124.1
Q ss_pred CCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCcc-CCCCCchhhhhcCccCeeeccC-cccCcCCCCCCCCCCCCC
Q 044980 98 NLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVH-LGKASDCWIYSLRHLFFIVLSY-NQFQGKIPSTLGNLTSLK 174 (313)
Q Consensus 98 ~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~ 174 (313)
.|++|++++|.+. ...+ .+.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|.++++|+
T Consensus 32 ~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 6778888887751 1112 46667777777777775 6555444566666677777766 666644445566666666
Q ss_pred EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcC---EEEccCC-CCCCCcchhhhhhcccc
Q 044980 175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT---SIDFSSV-KLSQDISQVLDIFSAYG 250 (313)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~~~~~~ 250 (313)
+|++++|.+++ +| . +..+.+|+ +|++++| .+.+..+..+..++
T Consensus 109 ~L~l~~n~l~~-lp----------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~--- 155 (239)
T 2xwt_C 109 FLGIFNTGLKM-FP----------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC--- 155 (239)
T ss_dssp EEEEEEECCCS-CC----------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB---
T ss_pred EEeCCCCCCcc-cc----------------------------c-cccccccccccEEECCCCcchhhcCcccccchh---
Confidence 66666666653 33 2 33344454 8999999 88876666677787
Q ss_pred ccCcc-EEEccccccccc----ccCCCCCCEEEccCCc-cccccCccccCC-CCCCEeeCCCCcCcc
Q 044980 251 TYALV-SLILSHCQISAA----LGKLSSLRNLDFSLNM-LNGSIPLSLGQI-SHLEYLDLSNNKFVT 310 (313)
Q Consensus 251 ~~~L~-~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~-l~~~ip~~l~~l-~~L~~L~l~~n~l~~ 310 (313)
+|+ .|++++|.++.. +.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++
T Consensus 156 --~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 156 --NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp --SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred --cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 999 999999998754 334 789999999995 985556678888 999999999999975
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=7.2e-23 Score=187.64 Aligned_cols=227 Identities=21% Similarity=0.119 Sum_probs=156.7
Q ss_pred CCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCCchhhc-----cCCCCCEEEcCCccCCCC----C
Q 044980 73 GYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLS-----SLLLLEHIDLGQVHLGKA----S 139 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~ 139 (313)
++|+.|++++|.+++. ++..+..+++|++|++++|.+ .......+. ..++|++|++++|.+++. +
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI--NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC--HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc--chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 3567777776666653 244455567777777777764 111111222 245788888888877764 3
Q ss_pred chhhhhcCccCeeeccCcccCcCC-----CCCCCCCCCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccc
Q 044980 140 DCWIYSLRHLFFIVLSYNQFQGKI-----PSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVR 210 (313)
Q Consensus 140 ~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~ 210 (313)
+..+..+++|++|++++|.++... +..+..+++|++|++++|.+++. ++..+..+++|++ |++++| .
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~--L~Ls~n--~ 295 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE--LSLAGN--E 295 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE--EECTTC--C
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce--EECCCC--C
Confidence 555667788888888888776321 22233577888888888888753 5666777888888 888887 4
Q ss_pred ccccccccccc-----CCCcCEEEccCCCCCCC----cchhhhhhccccccCccEEEccccccccc----c----c-CCC
Q 044980 211 FHQLIPTSFIR-----LCKLTSIDFSSVKLSQD----ISQVLDIFSAYGTYALVSLILSHCQISAA----L----G-KLS 272 (313)
Q Consensus 211 ~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~----~-~~~ 272 (313)
+....+..+.. .++|+.|++++|.+++. ++..+...+ +|+.|++++|.+++. + . ..+
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-----FLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS-----SCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC-----CccEEEccCCccccccHHHHHHHHcCCCC
Confidence 43332222222 25889999999988765 344455556 899999999998765 2 2 267
Q ss_pred CCCEEEccCCcccc----ccCccccCCCCCCEeeCCCCcCcc
Q 044980 273 SLRNLDFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 273 ~L~~L~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
+|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 99999999999986 788888889999999999999875
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=3.6e-22 Score=182.99 Aligned_cols=130 Identities=18% Similarity=0.059 Sum_probs=75.7
Q ss_pred CcceecCCCCcccc----cccccccCCCCCcEeeccCCCCCCCCCCchh-----hccCCCCCEEEcCCccCCCCC----c
Q 044980 74 YLKYSDAEDDDHYM----RSKLVVGNLSNLQYLDLSWIDCRLHVDSLSW-----LSSLLLLEHIDLGQVHLGKAS----D 140 (313)
Q Consensus 74 ~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~----~ 140 (313)
+|+.|++++|.++. .++..+.++++|++|++++|.+. ...+.. ....++|++|++++|.+++.. +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH--HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc--hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 57888888887774 45667777788888888877751 111111 112446777777777666533 3
Q ss_pred hhhhhcCccCeeeccCcccCcCCCCCCC-----CCCCCCEEEccCCCCCCC----CchhhhcCccccccccccccc
Q 044980 141 CWIYSLRHLFFIVLSYNQFQGKIPSTLG-----NLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n 207 (313)
..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++ |++++|
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~--L~Ls~n 237 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE--LALGSN 237 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE--EECCSS
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE--EeccCC
Confidence 3445556677777777766533222221 244666666666666543 3445555566666 666555
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=4.8e-20 Score=168.55 Aligned_cols=181 Identities=24% Similarity=0.196 Sum_probs=124.5
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
++|+.|++++|.+.+ ++. + .++|++|++++|.+ . .+|.+.++++|++|++++|.+++. |. ...+|++|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~-~--~~~L~~L~L~~n~l---~-~lp~~~~l~~L~~L~l~~N~l~~l-p~---~~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQL---E-KLPELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCC---S-SCCCCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEE
T ss_pred CCCcEEECCCCccCc-ccC-C--CCCCCEEECcCCCC---C-CCcccCCCCCCCEEECCCCcCccc-CC---CcccccEE
Confidence 566667776666654 221 1 15777777777775 2 255677778888888888877763 32 23478888
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS 232 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (313)
++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++ +++++| .+. .+| .++.+++|++|++++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~--L~l~~n--~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES--IVAGNN--ILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE--EECCSS--CCS-SCC-CCTTCTTCCEEECCS
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE--EECcCC--cCC-ccc-ccCCCCCCCEEECCC
Confidence 888888774 55 57778888888888888775 3432 247777 777777 444 456 378888888888888
Q ss_pred CCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCcccc
Q 044980 233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~ 286 (313)
|.+.+ +|.. .+ +|+.|++++|++++.-...++|++|++++|.+++
T Consensus 247 N~l~~-l~~~---~~-----~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 247 NLLKT-LPDL---PP-----SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCSS-CCSC---CT-----TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred CcCCc-cccc---cc-----ccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence 88876 3332 23 7888888888887753345778888888888875
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.3e-20 Score=152.93 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=94.7
Q ss_pred CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980 124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~ 203 (313)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++ |+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE--LA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE--EE
Confidence 3444444444444333333344444444444444444332333344444555555544444333333444445555 44
Q ss_pred ccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCc
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNM 283 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~ 283 (313)
+++| .+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+ .+++|++|+++.|+
T Consensus 107 L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~~---~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 107 LNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-----SLQYIWLHDNPWDC---TCPGIRYLSEWINK 176 (208)
T ss_dssp CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSCCBCC---CTTTTHHHHHHHHH
T ss_pred cCCC--cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-----CccEEEecCCCeec---CCCCHHHHHHHHHh
Confidence 4444 33333344456667788888888888766665566676 88888888887654 46678888999999
Q ss_pred cccccCccccCCCC
Q 044980 284 LNGSIPLSLGQISH 297 (313)
Q Consensus 284 l~~~ip~~l~~l~~ 297 (313)
++|.+|.+++.++.
T Consensus 177 ~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 177 HSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTBBCTTSSBCT
T ss_pred CCceeeccCccccC
Confidence 99999988887664
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.1e-20 Score=176.50 Aligned_cols=210 Identities=16% Similarity=0.103 Sum_probs=155.0
Q ss_pred CCCCCCCCCCc-----ccCce-EecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCC
Q 044980 39 ASWNIGDGDCC-----KWVGN-FCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLH 112 (313)
Q Consensus 39 ~~w~~~~~~~c-----~~~~v-~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 112 (313)
..|.. +.++| .|.++ .|.. .+|+.|++++|.+++ +|..+ .++|++|+|++|.+.
T Consensus 34 ~~W~~-~~~~~~~~~~~~~~l~~C~~--------------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-- 93 (571)
T 3cvr_A 34 DKWEK-QALPGENRNEAVSLLKECLI--------------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-- 93 (571)
T ss_dssp HHHHT-TCCTTCCHHHHHHHHHHHHH--------------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--
T ss_pred HHHhc-cCCccccccchhhhcccccc--------------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--
Confidence 45644 45556 68888 6742 256777777899887 77766 378999999999972
Q ss_pred CCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh
Q 044980 113 VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS 192 (313)
Q Consensus 113 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 192 (313)
.+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|.
T Consensus 94 --~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--- 157 (571)
T 3cvr_A 94 --SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--- 157 (571)
T ss_dssp --CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---
T ss_pred --ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---
Confidence 455 557899999999999988 454 433 89999999999996 676 57899999999999986 565
Q ss_pred cCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhc-cccccCccEEEccccccccc---c
Q 044980 193 KLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFS-AYGTYALVSLILSHCQISAA---L 268 (313)
Q Consensus 193 ~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~~~~~~L~~L~Ls~n~l~~~---~ 268 (313)
.+++|+. |++++| .+.+ +|. +. ++|+.|++++|.++ .+|. +.. . ....+.|+.|+|++|.++.. +
T Consensus 158 ~l~~L~~--L~Ls~N--~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 158 LPTSLEV--LSVRNN--QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp CCTTCCE--EECCSS--CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------CCEEEECCSSCCCCCCGGG
T ss_pred cCCCcCE--EECCCC--CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hhhcccccceEEecCCCcceecCHHH
Confidence 5678888 888888 5555 666 55 78999999999988 4454 322 1 00011238888888887765 5
Q ss_pred cCCCCCCEEEccCCccccccCccccCC
Q 044980 269 GKLSSLRNLDFSLNMLNGSIPLSLGQI 295 (313)
Q Consensus 269 ~~~~~L~~L~l~~n~l~~~ip~~l~~l 295 (313)
..+++|+.|+|++|.+++.+|..+..+
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 568888888888888888887776654
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-20 Score=154.18 Aligned_cols=185 Identities=18% Similarity=0.114 Sum_probs=124.8
Q ss_pred CCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCC
Q 044980 46 GDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLL 124 (313)
Q Consensus 46 ~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~ 124 (313)
...|.|.++.|.... ++.+.. .-.++|+.|++++|.+.+..+..+.++++|++|++++|.+ ....+ .+..+++
T Consensus 4 ~C~C~~~~v~c~~~~--l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 4 RCSCSGTTVECYSQG--RTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTS 77 (208)
T ss_dssp TCEEETTEEECCSSC--CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTT
T ss_pred CCEECCCEEEecCCC--ccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---CccChhhcCCCCC
Confidence 345899999996422 222221 1345788888888888766555677788888888888875 22222 3567788
Q ss_pred CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+. +++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~l 155 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY--IWL 155 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--EEC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE--EEe
Confidence 888888888887766666677778888888888887555555677788888888888777655555666777777 676
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFS 247 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (313)
++| .+. +.+++|+.|++..|.++|.+|..++.++
T Consensus 156 ~~N--~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 156 HDN--PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CSC--CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCC--Cee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 666 221 2344566666777777776666555443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=6.5e-22 Score=177.43 Aligned_cols=211 Identities=18% Similarity=0.144 Sum_probs=164.6
Q ss_pred ccccccCCCCCcEeeccCCCCCCCCCC---ch-hhccCCCCCEEEcCCccC---CCCCchhh-------hhcCccCeeec
Q 044980 89 SKLVVGNLSNLQYLDLSWIDCRLHVDS---LS-WLSSLLLLEHIDLGQVHL---GKASDCWI-------YSLRHLFFIVL 154 (313)
Q Consensus 89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~---~~-~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~L 154 (313)
++..+..+++|++|+|++|.+. ... ++ .+..+++|++|++++|.+ ++.+|..+ ..+++|++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEEC--HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCC--HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 5566788899999999999861 111 11 366899999999999644 44555544 67889999999
Q ss_pred cCcccCc----CCCCCCCCCCCCCEEEccCCCCCCCCchhhh----cC---------cccccccccccccccccc-cccc
Q 044980 155 SYNQFQG----KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS----KL---------NELSSFLLNLVSCMVRFH-QLIP 216 (313)
Q Consensus 155 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l---------~~L~~~~L~l~~n~~~~~-~~~~ 216 (313)
++|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++ |++++| .+. ..++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~--L~L~~n--~l~~~~~~ 177 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS--IICGRN--RLENGSMK 177 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE--EECCSS--CCTGGGHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE--EECCCC--CCCcHHHH
Confidence 9999986 3666778899999999999998754443333 33 89999 999998 444 2344
Q ss_pred ---cccccCCCcCEEEccCCCCCCC-----cchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEcc
Q 044980 217 ---TSFIRLCKLTSIDFSSVKLSQD-----ISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFS 280 (313)
Q Consensus 217 ---~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~ 280 (313)
..+..+++|++|++++|.+... .+..+..++ +|+.|+|++|.+++. +..+++|++|+|+
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-----~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-----ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-----TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-----CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 5677889999999999999842 222455566 999999999999632 7788999999999
Q ss_pred CCccccc----cCcccc--CCCCCCEeeCCCCcCcc
Q 044980 281 LNMLNGS----IPLSLG--QISHLEYLDLSNNKFVT 310 (313)
Q Consensus 281 ~n~l~~~----ip~~l~--~l~~L~~L~l~~n~l~~ 310 (313)
+|.+++. +|..+. .+++|++|++++|.+++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9999865 566663 48999999999999986
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1e-19 Score=156.93 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=79.4
Q ss_pred CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 174 (313)
++++|++|++++|.+ ..++.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i----~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hcCcccEEEccCCCc----ccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 344555555555543 122334445555555555555544332 4445555555555555442 22 244455555
Q ss_pred EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980 175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL 254 (313)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 254 (313)
+|++++|.+.+. ..+..+++|+. |++++| .+... ..+..+++|+.|++++|.+.+..+ +..++ +|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~--L~l~~n--~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-----~L 180 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLES--LYLGNN--KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-----KL 180 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCE--EECCSS--CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-----TC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCE--EEccCC--cCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC-----cc
Confidence 555555554432 23444455555 444444 22222 334445555555555555554332 33343 55
Q ss_pred cEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980 255 VSLILSHCQISAA--LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~ 285 (313)
+.|++++|.+++. +..+++|+.|++++|.+.
T Consensus 181 ~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred CEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 5555555555443 444555555555555544
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=170.30 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=122.8
Q ss_pred cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980 75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154 (313)
Q Consensus 75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 154 (313)
+..+.+..+.+...++ +..+++|+.|++++|.+ ..++.+..+++|+.|++++|.+.+..+ +..+++|++|+|
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCC----CCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCC----CCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 4444555555544332 34566777777777764 334456677777777777777766544 667777777777
Q ss_pred cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCC
Q 044980 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVK 234 (313)
Q Consensus 155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (313)
++|.+.+ +| .+..+++|+.|++++|.+.+ + ..+..+++|+. |++++| .+... ..+..+++|+.|++++|.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~--L~Ls~N--~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES--LYLGNN--KITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSE--EECCSS--CCCCC--GGGGSCTTCSEEECCSSC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCE--EECCCC--ccCCc--hhhcccCCCCEEECcCCc
Confidence 7777763 33 56677777777777777764 2 34667777777 777776 44443 456677777777777777
Q ss_pred CCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980 235 LSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG 286 (313)
Q Consensus 235 l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~ 286 (313)
+.+..| +..++ +|+.|+|++|.+++. +..+++|+.|+|++|.+.+
T Consensus 165 l~~~~~--l~~l~-----~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 165 ISDIVP--LAGLT-----KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCGG--GTTCT-----TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCCchh--hccCC-----CCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 776544 55555 777777777777665 6667777777777777764
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.5e-20 Score=161.86 Aligned_cols=241 Identities=16% Similarity=0.079 Sum_probs=181.8
Q ss_pred cccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCC
Q 044980 49 CKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLE 126 (313)
Q Consensus 49 c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~ 126 (313)
|.|..|.|... .++++-- +-.++++.|++++|.++..-+.+|.++++|++|+|++|.+ .+.++ +|.++++++
T Consensus 9 C~~~~v~C~~~--~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 9 CSNRVFLCQES--KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLPKLH 82 (350)
T ss_dssp EETTEEEEEST--TCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECTTSBCSCTTCC
T ss_pred eeCCEEEecCC--CCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccChhHhhcchhhh
Confidence 78899999642 2333211 1235799999999999865556799999999999999985 33343 577888876
Q ss_pred E-EEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCC-CCCCCCchhhhcC-ccccccccc
Q 044980 127 H-IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN-QFNFTSPGWLSKL-NELSSFLLN 203 (313)
Q Consensus 127 ~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l-~~L~~~~L~ 203 (313)
+ +.++.|.+....|..+..+++|++|++++|++....+..+....++..+++.++ .+....+..+..+ ..++. ++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~--L~ 160 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI--LW 160 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE--EE
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh--hc
Confidence 5 566778998887888899999999999999999666666667778889999774 4554444455555 36788 89
Q ss_pred ccccccccccccccccccCCCcCEEEccC-CCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccC
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSS-VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSL 281 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~ 281 (313)
+++| .+.. +|.......+|+.+++.+ |.+....+..+..++ +|+.|++++|+++.. ...+.+|+.|.+.+
T Consensus 161 L~~N--~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-----~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 161 LNKN--GIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-----GPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp CCSS--CCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-----CCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred cccc--cccC-CChhhccccchhHHhhccCCcccCCCHHHhccCc-----ccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 9998 5554 455554566899999986 555544445677888 999999999999887 55578888888877
Q ss_pred CccccccCccccCCCCCCEeeCCCC
Q 044980 282 NMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 282 n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+.-...+|. +..+++|+.+++.++
T Consensus 233 ~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CCCcCcCCC-chhCcChhhCcCCCC
Confidence 764547884 788999999999764
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.4e-19 Score=154.57 Aligned_cols=188 Identities=22% Similarity=0.248 Sum_probs=156.5
Q ss_pred CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980 98 NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID 177 (313)
Q Consensus 98 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 177 (313)
.+..+.+..+.+ ..+.....+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 25 ~~~~~~l~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~ 96 (291)
T 1h6t_A 25 ETIKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHTTCSCT----TSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred HHHHHHhcCCCc----ccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEE
Confidence 344455655553 2334466789999999999999875 3 388899999999999999954 44 88999999999
Q ss_pred ccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEE
Q 044980 178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSL 257 (313)
Q Consensus 178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 257 (313)
+++|.+++ ++ .+..+++|+. |++++| .+... ..+..+++|+.|++++|.+.+. ..+..++ +|+.|
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~--L~L~~n--~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L 161 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKS--LSLEHN--GISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLDTL 161 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCE--EECTTS--CCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEE
T ss_pred CCCCcCCC-Ch-hhccCCCCCE--EECCCC--cCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC-----CCCEE
Confidence 99999985 33 4899999999 999999 55543 4688899999999999999875 5677777 99999
Q ss_pred Eccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980 258 ILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 258 ~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
++++|.+++. +..+++|++|++++|.++ .++. +..+++|+.|++++|+++.
T Consensus 162 ~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccchhhcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccC
Confidence 9999999887 888999999999999999 4664 8999999999999998865
No 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.3e-19 Score=166.00 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=151.3
Q ss_pred CCCCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch
Q 044980 38 LASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS 117 (313)
Q Consensus 38 ~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 117 (313)
...|.. ..++|.|.+..+.... +. .....+++.|++++|.++ .+|..+. ++|++|++++|.+. .+|
T Consensus 12 w~~W~~-~~~~~~~~~r~~~~~~--~~----~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~----~lp 77 (622)
T 3g06_A 12 WSAWRR-AAPAEESRGRAAVVQK--MR----ACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT----SLP 77 (622)
T ss_dssp HHHHHH-TCCGGGHHHHHHHHHH--HH----HHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS----CCC
T ss_pred HHHHHh-cCCcchhccccccCcc--cc----cccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC----CCC
Confidence 356765 6678888653221000 00 001123667777778888 6777665 89999999999972 344
Q ss_pred hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980 118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL 197 (313)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 197 (313)
. .+++|++|++++|.++.. |. .+++|++|++++|.++ .+|. .+++|+.|++++|.+++ +|.. +++|
T Consensus 78 ~--~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L 143 (622)
T 3g06_A 78 A--LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGL 143 (622)
T ss_dssp C--CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred C--cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCC
Confidence 3 578999999999999864 32 7889999999999998 4555 56889999999999985 5543 4788
Q ss_pred ccccccccccccccccc--cccccccC--------------CCcCEEEccCCCCCCCcchhhhhhcc------------c
Q 044980 198 SSFLLNLVSCMVRFHQL--IPTSFIRL--------------CKLTSIDFSSVKLSQDISQVLDIFSA------------Y 249 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~~~--~~~~~~~~--------------~~L~~L~l~~n~l~~~~~~~l~~~~~------------~ 249 (313)
++ |++++| .+.++ .+..+..+ ++|+.|++++|.+.+. |..+..+.. .
T Consensus 144 ~~--L~Ls~N--~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~ 218 (622)
T 3g06_A 144 QE--LSVSDN--QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTSLPA 218 (622)
T ss_dssp CE--EECCSS--CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCC
T ss_pred CE--EECcCC--cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CCccchhhEEECcCCcccccCC
Confidence 88 888888 33331 22222222 6778888888877752 221111100 0
Q ss_pred cccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 250 GTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 250 ~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
..++|+.|++++|.+++.-..+++|+.|++++|.++ .+|. .+++|++|++++|+|+
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence 012456666666665554344566666666666666 4554 4566777777777665
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=5.7e-20 Score=177.11 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=124.5
Q ss_pred CCHHhHHHHHHhhhhcccCC-CCCCCCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCccccccccccc
Q 044980 16 CKESERGALLKLKRNLKDLS-NCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVG 94 (313)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~ 94 (313)
....+++++.++..+...+. .....|.......+.|.+..+.. .+++.+++. .|.+.. ++..+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~------------~n~~~~-~~~~~l 193 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELF------------ANGKDE-ANQALL 193 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEee------------CCCCCc-chhhHh
Confidence 45668899999998875332 22356654345556777766642 445555543 344443 222222
Q ss_pred CCCCCcEe-----eccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCC
Q 044980 95 NLSNLQYL-----DLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGN 169 (313)
Q Consensus 95 ~l~~L~~L-----~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 169 (313)
....|+.+ ++..|.+ ......+..++.|+.|++++|.+.. +|..+..+++|++|+|++|.++ .+|..+..
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred hcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 22222222 2222221 1111246778888888888888874 4555668888888888888888 78888888
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccc
Q 044980 170 LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAY 249 (313)
Q Consensus 170 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (313)
+++|++|+|++|.++ .+|..++.+++|++ |++++| .+. .+|..++.+++|+.|++++|.+.+.+|..+.....
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~L~~N--~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~- 341 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKY--FYFFDN--MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV- 341 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSE--EECCSS--CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCE--EECCCC--CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-
Confidence 888888888888888 67888888888888 888888 444 57878888999999999999999888887765431
Q ss_pred cccCccEEEcccccccccccCCCCCCEEEccCC--------ccccccCccccCCCCCCEeeCCCCcCc
Q 044980 250 GTYALVSLILSHCQISAALGKLSSLRNLDFSLN--------MLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 250 ~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n--------~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
.+..+++++|.+++.+ ...|+.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 342 ---~~~~l~l~~N~l~~~~--p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 342 ---TGLIFYLRDNRPEIPL--PHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---HHHHHHHHHCCCCCCC--CCC-----------------------------------------CCC
T ss_pred ---hhhHHhhccCcccCcC--ccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 2334678888887753 235677777777 233333444455566667777777664
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.2e-18 Score=144.81 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=83.4
Q ss_pred CCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCC
Q 044980 45 DGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLL 124 (313)
Q Consensus 45 ~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 124 (313)
..+.|.|.++.|.... ++.+.. +-.++|+.|++++|.+.+..|..|.++++|++|+|++|.
T Consensus 15 ~~~~Cs~~~v~c~~~~--l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---------------- 75 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR--HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---------------- 75 (229)
T ss_dssp TTCEEETTEEECTTSC--CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----------------
T ss_pred CCCEEeCCEeEccCCC--cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----------------
Confidence 7788999999996421 111111 112445555555555555445455555555555555555
Q ss_pred CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+. |++
T Consensus 76 ----------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~L 142 (229)
T 3e6j_A 76 ----------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH--LAL 142 (229)
T ss_dssp ----------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE--EEC
T ss_pred ----------CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE--EEC
Confidence 43333333344444444444444444333333444455555555555544 34444444555555 444
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI 239 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (313)
++| .+....+..+..+++|+.|++++|.+....
T Consensus 143 ~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 143 DQN--QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSS--CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCC--cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 444 333333344556667777777777776554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.1e-18 Score=164.54 Aligned_cols=191 Identities=24% Similarity=0.268 Sum_probs=159.6
Q ss_pred CCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCE
Q 044980 96 LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQ 175 (313)
Q Consensus 96 l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 175 (313)
+..+..+.+..+.+ ..+..+..+++|+.|++++|.+.... .+..+++|++|+|++|.+.+..+ +..+++|+.
T Consensus 20 l~~l~~l~l~~~~i----~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 20 FAETIKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHHTTCSCT----TSEECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHHhccCCCc----ccccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 34555666766663 33444677899999999999998753 38899999999999999995444 889999999
Q ss_pred EEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCcc
Q 044980 176 IDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV 255 (313)
Q Consensus 176 L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 255 (313)
|+|++|.+.+ +| .+..+++|+. |++++| .+.. + ..+..+++|+.|++++|.+.+. ..+..++ +|+
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~--L~Ls~N--~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-----~L~ 156 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKS--LSLEHN--GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLD 156 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCE--EECTTS--CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-----TCS
T ss_pred EECcCCCCCC-Ch-hhccCCCCCE--EEecCC--CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC-----CCC
Confidence 9999999985 34 6889999999 999999 5554 2 4588999999999999999975 5577777 999
Q ss_pred EEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980 256 SLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311 (313)
Q Consensus 256 ~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~ 311 (313)
.|+|++|.+++. +..+++|+.|+|++|++.+ +| .+..+++|+.|++++|++++.
T Consensus 157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCcCCCchhhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 999999999887 8889999999999999995 54 589999999999999998764
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.8e-18 Score=141.73 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=91.0
Q ss_pred CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980 126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205 (313)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~ 205 (313)
+.++++++.++.. |..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++ |+++
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~--L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS--LVLY 88 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE--EECC
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE--EECC
Confidence 5677777777654 2211 245777778877777655566777777777777777777666666666666666 6666
Q ss_pred ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccC
Q 044980 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSL 281 (313)
Q Consensus 206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~ 281 (313)
+| .+..+.+..+..+++|++|++++|.+.+..+..+..++ +|+.|+|++|.+++. +..+++|+.|++++
T Consensus 89 ~N--~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 89 GN--KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CC--cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 66 44444444455666666666666666655555555555 555555555555443 44455555555555
Q ss_pred Cccc
Q 044980 282 NMLN 285 (313)
Q Consensus 282 n~l~ 285 (313)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 5544
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=140.90 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=92.2
Q ss_pred hhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC
Q 044980 144 YSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC 223 (313)
Q Consensus 144 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~ 223 (313)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++ |++++| .+....+..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~--L~l~~n--~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLER--LRIMGK--DVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCE--EEEECT--TCBGGGSCCCTTCT
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCE--EEeECC--ccCcccChhhcCCC
Confidence 34444455555555444 333 34445555555555553331 123445555555 555555 44444455566667
Q ss_pred CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc--ccCCCCCCEEEccCCccccccCccccCCCCCCE
Q 044980 224 KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300 (313)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~ 300 (313)
+|++|++++|.+.+..+..+..++ +|+.|++++|. ++.. +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~-----~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLP-----KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCS-----SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCEEEecCCccCcHhHHHHhhCC-----CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 777777777777766666666666 77777777776 5544 6677888888888888874 55 5778888888
Q ss_pred eeCCCCcCccc
Q 044980 301 LDLSNNKFVTK 311 (313)
Q Consensus 301 L~l~~n~l~~~ 311 (313)
|++++|++.+.
T Consensus 186 L~l~~N~i~~~ 196 (197)
T 4ezg_A 186 LYAFSQTIGGK 196 (197)
T ss_dssp EEECBC-----
T ss_pred EEeeCcccCCc
Confidence 88888887653
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=141.47 Aligned_cols=153 Identities=21% Similarity=0.224 Sum_probs=80.8
Q ss_pred CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
+++++++|.++.. |..+ ...+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++ |++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~--L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE--ILL 88 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EEC
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE--EEC
Confidence 4667777666543 3211 2235666666666664433 33556666666666666666544444555555555 555
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCcc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNML 284 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l 284 (313)
++| .+.+..+..+..+++|++|++++|.+.+..|.. +..+++|++|+|++|++
T Consensus 89 s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 89 TSN--RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-------------------------FIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp CSS--CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-------------------------STTCTTCSEEECTTSCC
T ss_pred CCC--ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-------------------------cCCCccCCEEECCCCcC
Confidence 554 344444444444455555555555544444443 44445555555555555
Q ss_pred ccccCccccCCCCCCEeeCCCCcCcc
Q 044980 285 NGSIPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 285 ~~~ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
++..|..+..+++|++|++++|.+++
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcC
Confidence 54445555555555555555555543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=8e-18 Score=139.90 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=107.0
Q ss_pred CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
.+.++.+++.++... .. ..++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+. |++
T Consensus 21 ~~~v~c~~~~l~~ip-~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~--L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV--LDL 95 (229)
T ss_dssp TTEEECTTSCCSSCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred CCEeEccCCCcCccC-CC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE--EEC
Confidence 567888888776543 21 2366888888888888777788888888888888888887555566677777877 777
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS 280 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~ 280 (313)
++| .+....+..+..+++|+.|++++|.+. .+|..+..++ +|+.|++++|++++. +..+++|+.|+++
T Consensus 96 s~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTN--QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSS--CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----TCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCC--cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----CCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 777 566555556677777777777777777 4566566555 677777777776654 5556667777777
Q ss_pred CCccccc
Q 044980 281 LNMLNGS 287 (313)
Q Consensus 281 ~n~l~~~ 287 (313)
+|.+...
T Consensus 168 ~N~~~c~ 174 (229)
T 3e6j_A 168 GNPWDCE 174 (229)
T ss_dssp TSCBCTT
T ss_pred CCCccCC
Confidence 7766643
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.4e-18 Score=163.35 Aligned_cols=230 Identities=23% Similarity=0.251 Sum_probs=189.3
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.++.|+.+++..|..... .....++.|+.|+++.|.+.........+..+..|+++++..+...... ..+..+++|+
T Consensus 347 ~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~l~~L~ 423 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS-SNFLGLEQLE 423 (635)
T ss_dssp BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC-SCCTTCTTCC
T ss_pred cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc-cccccccccc
Confidence 567788888888876643 2355789999999999986322222235667889999999998776543 3467888999
Q ss_pred eeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980 151 FIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 151 ~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 229 (313)
.+++..+......+ ..+..+++++.++++.|.+.+..+..+..++.++. +++++|. ......|..+..+++|++|+
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~--L~Ls~N~-~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--LKMAGNS-FQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE--EECTTCE-EGGGEECSCCTTCTTCCEEE
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhh--hhhhhcc-cccccCchhhhhccccCEEE
Confidence 99999887765444 45778999999999999999888888999999999 9998872 13345788899999999999
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCC-CCCCEeeCC
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQI-SHLEYLDLS 304 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l-~~L~~L~l~ 304 (313)
+++|.+++..|..+..++ +|+.|+|++|++++. +..+++|++|++++|++++..|..+..+ ++|++|+++
T Consensus 501 Ls~N~L~~l~~~~f~~l~-----~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CCCCccCCcChHHHcCCC-----CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 999999998888888888 999999999999876 7889999999999999998889999887 689999999
Q ss_pred CCcCccc
Q 044980 305 NNKFVTK 311 (313)
Q Consensus 305 ~n~l~~~ 311 (313)
+|+++.+
T Consensus 576 ~Np~~C~ 582 (635)
T 4g8a_A 576 QNDFACT 582 (635)
T ss_dssp TCCBCCS
T ss_pred CCCCccc
Confidence 9998753
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-18 Score=138.80 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=76.5
Q ss_pred cCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980 94 GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173 (313)
Q Consensus 94 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 173 (313)
.++++|++|++++|.+ ..++.+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINV----TDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCC----SCCTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCc----cChHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4456677777777664 2334566666777777776655432 235666667777777777665556666667777
Q ss_pred CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCC
Q 044980 174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ 237 (313)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (313)
++|++++|.+++..|..+..+++|++ |++++| .....+| .+..+++|+.|++++|.+.+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~--L~L~~n--~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNS--IDLSYN--GAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCE--EECCSC--TBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCE--EEccCC--CCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 77777777666555555555555555 555554 2111122 34444455555555555443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=138.15 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=90.8
Q ss_pred eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980 77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154 (313)
Q Consensus 77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 154 (313)
.+++++|.++. +|..+. ..+++|+|++|.+. ...+ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 44455566653 555443 34567777777651 1111 2556666777777777666655555666666666666
Q ss_pred cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCC
Q 044980 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVK 234 (313)
Q Consensus 155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (313)
++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+. |++++| .+.+..|..+..+++|+.|++++|.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL--LSLYDN--QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE--EECTTS--CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE--EECCCC--cCCEECHHHhcCCCCCCEEEecCcC
Confidence 666666555555666666666666666666555555666666666 666665 4555555556666666666666666
Q ss_pred CCCC
Q 044980 235 LSQD 238 (313)
Q Consensus 235 l~~~ 238 (313)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 5543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.4e-18 Score=152.82 Aligned_cols=171 Identities=21% Similarity=0.225 Sum_probs=110.1
Q ss_pred cEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhh-hcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980 100 QYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIY-SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID 177 (313)
Q Consensus 100 ~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 177 (313)
+.++++++.+. .+| .+ ...++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus 21 ~~l~c~~~~l~----~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLP----NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCS----SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcC----ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 57777777752 233 12 23577888888888776666565 777788888888888766666777788888888
Q ss_pred ccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhh---hhhccccccCc
Q 044980 178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL---DIFSAYGTYAL 254 (313)
Q Consensus 178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~~~~~~L 254 (313)
+++|.+++..+..|..+++|+. |++++| .+....|..+..+++|+.|++++|.+.+..+..+ ..++ +|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~-----~L 165 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEV--LLLYNN--HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP-----KL 165 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCE--EECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT-----TC
T ss_pred CCCCcCCcCCHHHhCCCcCCCE--EECCCC--cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC-----cC
Confidence 8888877655556777777777 777777 5555566667777777777777777765433333 2333 55
Q ss_pred cEEEccccccccc----ccCCCC--CCEEEccCCccc
Q 044980 255 VSLILSHCQISAA----LGKLSS--LRNLDFSLNMLN 285 (313)
Q Consensus 255 ~~L~Ls~n~l~~~----~~~~~~--L~~L~l~~n~l~ 285 (313)
+.|+|++|++++. +..++. ++.|++++|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6666666655543 333333 245555555554
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.3e-17 Score=137.82 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=102.3
Q ss_pred ecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccC
Q 044980 78 SDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156 (313)
Q Consensus 78 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (313)
++++++.++. +|..+. +.|++|++++|.+. ...+ .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EECTTSCCSS-CCSSCC--TTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEcCCCCcCc-CCCccC--cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4444565553 555443 57888888888751 1112 567778888888888888777677777888888888888
Q ss_pred cccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCC
Q 044980 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS 236 (313)
Q Consensus 157 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (313)
|.++...+..|..+++|++|++++|.+++..|..+..+++|+. |++++| .+....+..+..+++|+.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL--LSLYDN--KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE--EECCCC--cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8887444445677788888888888877766666777777777 666666 555555555666666667777666654
Q ss_pred C
Q 044980 237 Q 237 (313)
Q Consensus 237 ~ 237 (313)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6.2e-18 Score=150.14 Aligned_cols=176 Identities=20% Similarity=0.166 Sum_probs=143.5
Q ss_pred eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhc-cCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980 77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-SLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154 (313)
Q Consensus 77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 154 (313)
.++++++.+.. +|..+. +.+++|+|++|.+. ...+ .+. ++++|++|++++|.+++..+..+..+++|++|+|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 45556677764 666553 46899999999962 2222 455 8999999999999999887778999999999999
Q ss_pred cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccc---ccCCCcCEEEcc
Q 044980 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSF---IRLCKLTSIDFS 231 (313)
Q Consensus 155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~---~~~~~L~~L~l~ 231 (313)
++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+. |++++| .+..+-+..+ ..+++|+.|+++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK--LYLSQN--QISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EECCSS--CCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE--EECCCC--cCCeeCHHHhcCcccCCcCCEEECC
Confidence 999999777778999999999999999999888889999999999 999999 6665444444 678999999999
Q ss_pred CCCCCCCcchhhhhhccccccC--ccEEEccccccccc
Q 044980 232 SVKLSQDISQVLDIFSAYGTYA--LVSLILSHCQISAA 267 (313)
Q Consensus 232 ~n~l~~~~~~~l~~~~~~~~~~--L~~L~Ls~n~l~~~ 267 (313)
+|.+.+..+..+..++ . ++.|++++|.+...
T Consensus 172 ~N~l~~l~~~~~~~l~-----~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLP-----AWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SSCCCCCCHHHHHHSC-----HHHHTTEECCSSCEECC
T ss_pred CCCCCccCHHHhhhcc-----HhhcceEEecCCCccCC
Confidence 9999987767777776 5 48899999998754
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.9e-18 Score=150.18 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=153.7
Q ss_pred ecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCch-hhhhcCccCe-ee
Q 044980 78 SDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDC-WIYSLRHLFF-IV 153 (313)
Q Consensus 78 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-L~ 153 (313)
++.++++++ .+|..+ .+++++|+|++|.+ ..+| +|.++++|++|++++|.+.+.++. .+..++++.+ +.
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 334456665 467665 36899999999997 3344 588999999999999998775554 5778888665 66
Q ss_pred ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC-CcCEEEccC
Q 044980 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSS 232 (313)
Q Consensus 154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~ 232 (313)
+..|+++...|..|..+++|++|++++|.+.+..+..+.....+.. +++.++. .+..+-+..+..+. .++.|++++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~--l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL--LDIQDNI-NIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE--EEEESCT-TCCEECTTSSTTSBSSCEEEECCS
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh--hhhcccc-ccccccccchhhcchhhhhhcccc
Confidence 7789999777888999999999999999998766655555666666 6665531 34444444555554 689999999
Q ss_pred CCCCCCcchhhhhhccccccCccEEEccc-cccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 233 VKLSQDISQVLDIFSAYGTYALVSLILSH-CQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~-n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
|.++. ++....... +|+.+++++ |.++.. |..+++|++||+++|+|+ .+|.. .+.+|+.|.+.++
T Consensus 164 N~i~~-i~~~~f~~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST 233 (350)
T ss_dssp SCCCE-ECTTSSTTE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred ccccC-CChhhcccc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence 99985 444444445 799999985 556544 788999999999999999 67753 3455666665443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.5e-18 Score=146.01 Aligned_cols=169 Identities=21% Similarity=0.207 Sum_probs=136.7
Q ss_pred CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980 95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174 (313)
Q Consensus 95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 174 (313)
++..+..++++.+.+ ..++.+..+++|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i----~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV----TDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCT----TSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCc----ccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCC
Confidence 466788888988885 3455678899999999999999864 3 588899999999999999854 44 88999999
Q ss_pred EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980 175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL 254 (313)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 254 (313)
+|++++|.+++ +|. +.. ++|+. |++++| .+... ..+..+++|+.|++++|.+++. + .+..++ +|
T Consensus 89 ~L~L~~N~l~~-l~~-~~~-~~L~~--L~L~~N--~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~-----~L 152 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNG-IPS-ACLSR--LFLDNN--ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS-----KL 152 (263)
T ss_dssp EEECCSSCCSC-CTT-CCC-SSCCE--EECCSS--CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT-----TC
T ss_pred EEECCCCccCC-cCc-ccc-CcccE--EEccCC--ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCC-----CC
Confidence 99999999985 343 333 88999 899888 55542 3588889999999999999865 3 566666 89
Q ss_pred cEEEccccccccc--ccCCCCCCEEEccCCccccc
Q 044980 255 VSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGS 287 (313)
Q Consensus 255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ 287 (313)
+.|++++|++++. +..+++|+.|++++|.+.+.
T Consensus 153 ~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 EVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred CEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 9999999998877 77888999999999998843
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=9e-18 Score=142.51 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=136.5
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.+.+++.++++.+.+++.. .+.++++|++|++++|.+ ..++.+..+++|++|++++|.+++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI----QSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc----ccchHHhhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 3455677778888877533 477889999999999986 345578889999999999999988755 88899999
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
+|++++|.+++ +|... . ++|++|++++|.+++. + .+..+++|+. |++++| .+.+. + .+..+++|+.|++
T Consensus 89 ~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~--L~Ls~N--~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEI--LSIRNN--KLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp EEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCE--EECTTS--CCCBC-G-GGGGCTTCCEEEC
T ss_pred EEECCCCccCC-cCccc-c-CcccEEEccCCccCCC-h-hhcCcccccE--EECCCC--cCCCC-h-HHccCCCCCEEEC
Confidence 99999999984 45433 3 8899999999998863 3 5888999999 999998 55553 3 6888999999999
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 267 (313)
++|.+.+. ..+..++ +|+.|++++|.+++.
T Consensus 158 ~~N~i~~~--~~l~~l~-----~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLK-----KVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCC-----CCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCC-----CCCEEeCCCCcccCC
Confidence 99999876 5566666 899999999998765
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.2e-19 Score=166.32 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=80.0
Q ss_pred CCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980 172 SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251 (313)
Q Consensus 172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (313)
.|+.|++++|.+++ +|. ++.+++|+. |++++| .+. .+|..++.+++|+.|++++|.+++ +| .+..++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~--L~Ls~N--~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~---- 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTH--LDLSHN--RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP---- 508 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCE--EECCSS--CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS----
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcE--eecCcc--ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC----
Confidence 36777777777764 454 677777777 777776 444 466777777777777777777776 44 566666
Q ss_pred cCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCcc---ccCCCCCCEeeC
Q 044980 252 YALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPLS---LGQISHLEYLDL 303 (313)
Q Consensus 252 ~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~~---l~~l~~L~~L~l 303 (313)
+|+.|+|++|++++. +..+++|+.|++++|.+++..|.. +..+++|+.|++
T Consensus 509 -~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 -RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777777776543 566778888888888887543321 233678888764
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=3e-16 Score=146.58 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=130.7
Q ss_pred CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (313)
+++|+.|++++|.++ .+| ..+++|++|++++|.+.. +|.+.+ +|++|++++|.+++. |. .+++|++
T Consensus 79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~----ip~l~~--~L~~L~Ls~N~l~~l-p~---~l~~L~~ 144 (571)
T 3cvr_A 79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST----LPELPA--SLKHLDVDNNQLTML-PE---LPALLEY 144 (571)
T ss_dssp CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC----CCCCCT--TCCEEECCSSCCSCC-CC---CCTTCCE
T ss_pred cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC----cchhhc--CCCEEECCCCcCCCC-CC---cCccccE
Confidence 478999999999998 577 457999999999999732 444443 999999999999984 44 6888999
Q ss_pred eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCc------
Q 044980 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL------ 225 (313)
Q Consensus 152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L------ 225 (313)
|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+. |++++| .+. .+|. +.. +|
T Consensus 145 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~--L~Ls~N--~L~-~lp~-~~~--~L~~~~~~ 208 (571)
T 3cvr_A 145 INADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA--LDVSTN--LLE-SLPA-VPV--RNHHSEET 208 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE--EECCSS--CCS-SCCC-CC----------C
T ss_pred EeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE--EECcCC--CCC-chhh-HHH--hhhccccc
Confidence 9999999995 676 57899999999999986 666 55 89999 999999 555 4566 544 67
Q ss_pred -CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980 226 -TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267 (313)
Q Consensus 226 -~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 267 (313)
+.|++++|.++. +|..+..++ +|+.|+|++|.+++.
T Consensus 209 L~~L~Ls~N~l~~-lp~~l~~l~-----~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 209 EIFFRCRENRITH-IPENILSLD-----PTCTIILEDNPLSSR 245 (571)
T ss_dssp CEEEECCSSCCCC-CCGGGGGSC-----TTEEEECCSSSCCHH
T ss_pred ceEEecCCCccee-cCHHHhcCC-----CCCEEEeeCCcCCCc
Confidence 999999999995 677777787 999999999999876
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.3e-18 Score=161.34 Aligned_cols=193 Identities=18% Similarity=0.135 Sum_probs=99.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCC----------CCCCCCch-hhccCCCCCEEE-cCCccCCCC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDC----------RLHVDSLS-WLSSLLLLEHID-LGQVHLGKA 138 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~----------~~~~~~~~-~~~~l~~L~~L~-l~~n~l~~~ 138 (313)
..++|+.|++++|.+. .+|..++++++|++|++++|.. ....+..| .+..+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3455666666666654 4566666666666666644420 00011122 344455555555 333322110
Q ss_pred Cch-----hhhhc--CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccc
Q 044980 139 SDC-----WIYSL--RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF 211 (313)
Q Consensus 139 ~~~-----~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~ 211 (313)
... .+..+ ..|++|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+. |++++| .+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~Ls~N--~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV--LQASDN--AL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE--EECCSS--CC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE--EECCCC--CC
Confidence 000 01111 135566666666653 444 556666666666666665 55556666666666 666665 44
Q ss_pred ccccccccccCCCcCEEEccCCCCCCCc-chhhhhhccccccCccEEEccccccccc-------ccCCCCCCEEE
Q 044980 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDIFSAYGTYALVSLILSHCQISAA-------LGKLSSLRNLD 278 (313)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~L~~L~ 278 (313)
.+ +| .++.+++|+.|++++|.+++.. |..+..++ +|+.|++++|.+++. +..+++|+.|+
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 43 44 5566666666666666666554 55555555 666666666665544 22245555554
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3e-17 Score=158.16 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=97.1
Q ss_pred ccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC
Q 044980 89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL 167 (313)
Q Consensus 89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 167 (313)
.+..+..++.|++|+|++|.+ . .+| .+.++++|++|++++|.++ .+|..+..+++|++|+|++|.++ .+|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l---~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI---F-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ------CCCCCCEEECTTSCC---S-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred ChhhhccCCCCcEEECCCCCC---C-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 355567777788888887775 2 333 4557777888888888777 55666777777888888888877 677777
Q ss_pred CCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC-CcCEEEccCCCCCCCcch
Q 044980 168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSSVKLSQDISQ 241 (313)
Q Consensus 168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~ 241 (313)
..+++|++|+|++|.++ .+|..++.+++|+. |++++| .+.+.+|..+..+. ....+++++|.+.+.+|.
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~--L~L~~N--~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF--LGVEGN--PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC--EECTTS--CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccE--EeCCCC--ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77788888888888776 56766777778887 777777 66666666665442 123466777777777665
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=7.5e-18 Score=158.98 Aligned_cols=230 Identities=12% Similarity=0.064 Sum_probs=135.7
Q ss_pred CCCCcceecCCCCcccccccccccC-CCC-CcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCC----chhh
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGN-LSN-LQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKAS----DCWI 143 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~~-L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~ 143 (313)
.+++|+.|++++|.+++..+..+.. ++. |++|++++|.. .....++ ....+++|++|++++|.+++.. +..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4567777777777776655555544 333 77777776651 0111122 2336788888888888776653 3345
Q ss_pred hhcCccCeeeccCcccCc----CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccc---------
Q 044980 144 YSLRHLFFIVLSYNQFQG----KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR--------- 210 (313)
Q Consensus 144 ~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~--------- 210 (313)
..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+..+++|+. +.++.+...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~--L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEE--FCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCE--EEECBCCCCTTCTTSSSC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHh--hcccccccccchHHHHHH
Confidence 667778888888887762 233444567888888888887764 5666777777777 555422000
Q ss_pred ---------------cccccccccccCCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEccccccccc-----cc
Q 044980 211 ---------------FHQLIPTSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAA-----LG 269 (313)
Q Consensus 211 ---------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~ 269 (313)
....+|..+..+++|++|++++|.+.+... ..+..++ +|+.|+++ +.+.+. ..
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-----~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-----NLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-----TCCEEEEE-GGGHHHHHHHHHH
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-----CCCEEecc-CccCHHHHHHHHH
Confidence 112244555556667777776666544322 2233444 67777766 333322 34
Q ss_pred CCCCCCEEEccC-----------Cccccc-cCccccCCCCCCEeeCCCCcCcc
Q 044980 270 KLSSLRNLDFSL-----------NMLNGS-IPLSLGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 270 ~~~~L~~L~l~~-----------n~l~~~-ip~~l~~l~~L~~L~l~~n~l~~ 310 (313)
.+++|++|++++ |.+++. ++.....+++|++|+++.|.+++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 566777777772 455532 22223446777777777676654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.7e-16 Score=121.82 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=85.8
Q ss_pred CccCeeeccCcccC-cCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCc
Q 044980 147 RHLFFIVLSYNQFQ-GKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL 225 (313)
Q Consensus 147 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L 225 (313)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------------------------------~~~~~l~~L 73 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------------------------------SNLPKLPKL 73 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------------------------------SSCCCCSSC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------------------------------hhhccCCCC
Confidence 44566666666655 45555555555666666666555432 334455667
Q ss_pred CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccC---ccccCCCC
Q 044980 226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIP---LSLGQISH 297 (313)
Q Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip---~~l~~l~~ 297 (313)
++|++++|.+.+.+|..+..++ +|+.|++++|.+++. +..+++|++|++++|.+++..+ ..+..+++
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLP-----NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCT-----TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred CEEECcCCcCchHHHHHHhhCC-----CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 7777777777766666666666 777777777777653 5677888888888888884333 36778888
Q ss_pred CCEeeCCCCcCcc
Q 044980 298 LEYLDLSNNKFVT 310 (313)
Q Consensus 298 L~~L~l~~n~l~~ 310 (313)
|++|++++|.+..
T Consensus 149 L~~L~l~~n~~~~ 161 (168)
T 2ell_A 149 LTYLDGYDREDQE 161 (168)
T ss_dssp CCEETTEETTSCB
T ss_pred CcEecCCCCChhh
Confidence 8888888887754
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=7e-17 Score=152.33 Aligned_cols=226 Identities=11% Similarity=0.004 Sum_probs=112.1
Q ss_pred CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCC-CCCch-hhccCCCCCEEEcCCccCCCCCchhhh
Q 044980 71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLH-VDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIY 144 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 144 (313)
.+++|+.|++++|.+.+. ++..+.+++.|++|++++|.+... ...++ .+..+++|++|++++|.+.+ .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 456677777776665544 333344566677777766664210 01222 24456777777777776655 345566
Q ss_pred hcCccCeeeccCcccC---cCCCCCCCCCC-----------------------CCCEEEccCCCCCCCCc-hhhhcCccc
Q 044980 145 SLRHLFFIVLSYNQFQ---GKIPSTLGNLT-----------------------SLKQIDLSHNQFNFTSP-GWLSKLNEL 197 (313)
Q Consensus 145 ~l~~L~~L~L~~n~~~---~~~~~~~~~l~-----------------------~L~~L~l~~n~l~~~~p-~~~~~l~~L 197 (313)
.+++|++|.++..... +..+..+..++ +|++|++++|.+++... ..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 6666776666532111 11122333334 44444444444332211 223344444
Q ss_pred ccccccccccccccccccccccccCCCcCEEEcc-----------CCCCCCCcchh-hhhhccccccCccEEEccccccc
Q 044980 198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFS-----------SVKLSQDISQV-LDIFSAYGTYALVSLILSHCQIS 265 (313)
Q Consensus 198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~-----------~n~l~~~~~~~-l~~~~~~~~~~L~~L~Ls~n~l~ 265 (313)
+. |++..+ .....++.....+++|++|+++ .|.+++..... ...++ +|+.|+++.+.++
T Consensus 321 ~~--L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 321 EV--LETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-----ELEYMAVYVSDIT 391 (592)
T ss_dssp CE--EEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-----TCSEEEEEESCCC
T ss_pred CE--EeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-----cCeEEEeecCCcc
Confidence 44 433322 1111123333445566666666 23443321111 22233 6666666666665
Q ss_pred cc----cc-CCCCCCEEEcc----CCccccc-----cCccccCCCCCCEeeCCCC
Q 044980 266 AA----LG-KLSSLRNLDFS----LNMLNGS-----IPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 266 ~~----~~-~~~~L~~L~l~----~n~l~~~-----ip~~l~~l~~L~~L~l~~n 306 (313)
+. +. .+++|+.|+++ .|.+++. ++..+..+++|++|++++|
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 54 22 26667777775 4555542 3334555677777777543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.8e-16 Score=120.76 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=105.5
Q ss_pred CCCCcceecCCCCccc-ccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHY-MRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.. ++.+..+++|++|++++|.+++.+|..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----CTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----chhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3467888999999998 7788888899999999999998622 2668889999999999999998778878889999
Q ss_pred CeeeccCcccCcC-CCCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccccccccc
Q 044980 150 FFIVLSYNQFQGK-IPSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSSFLLNLV 205 (313)
Q Consensus 150 ~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~~~L~l~ 205 (313)
++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+. ++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~--L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY--LDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE--ETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc--ccCC
Confidence 9999999998853 33778889999999999999886555 46777777777 5543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.7e-16 Score=121.82 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=103.3
Q ss_pred CCCCcceecCCCCccc-ccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980 71 PFGYLKYSDAEDDDHY-MRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 149 (313)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.. ++.+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 4467888888889987 6788878889999999999998622 2667888999999999999988777777789999
Q ss_pred CeeeccCcccCcCC-CCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccccccccccc
Q 044980 150 FFIVLSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 150 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~~~L~l~~n 207 (313)
++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+. +++.+|
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~--L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY--LDGYDR 157 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE--ETTEET
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE--ecCCCC
Confidence 99999999888432 2677888899999999998875544 35666677776 666665
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.1e-15 Score=123.48 Aligned_cols=129 Identities=18% Similarity=0.285 Sum_probs=75.3
Q ss_pred CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch-hhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI 228 (313)
Q Consensus 150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 228 (313)
+++++++|.++ .+|..+.. ++++|++++|.+.+..+. .+..+++|++ |++++| .+.+..|..+..+++|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVK--LELKRN--QLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCE--EECCSS--CCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCE--EECCCC--CCCCcCHhHcCCcccCCEE
Confidence 67888888886 67775543 788888888888754443 3555555555 555555 4444445555555555555
Q ss_pred EccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980 229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l 308 (313)
++++|.+.+..+..+. .+++|++|++++|++++.+|..+..+++|++|++++|.+
T Consensus 84 ~Ls~N~l~~~~~~~~~-------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 84 QLGENKIKEISNKMFL-------------------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSCCCCEECSSSST-------------------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCccCHHHhc-------------------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5555555544443333 444555555555555544455555555555555555555
Q ss_pred cc
Q 044980 309 VT 310 (313)
Q Consensus 309 ~~ 310 (313)
++
T Consensus 139 ~c 140 (192)
T 1w8a_A 139 NC 140 (192)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=9.7e-16 Score=123.73 Aligned_cols=113 Identities=25% Similarity=0.345 Sum_probs=58.9
Q ss_pred CCCEEEcCCccCCCCCch-hhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980 124 LLEHIDLGQVHLGKASDC-WIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L 202 (313)
.+++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++ |
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT--L 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE--E
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE--E
Confidence 444444444444443332 2444555555555555555444445555555555555555555444444444455555 4
Q ss_pred cccccccccccccccccccCCCcCEEEccCCCCCCCcc
Q 044980 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS 240 (313)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (313)
++++| .+.+..|..+..+++|++|++++|.+.+..+
T Consensus 108 ~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 108 NLYDN--QISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSS--CCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCC--cCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 55444 4444455556666677777777777766543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.1e-15 Score=116.50 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=83.5
Q ss_pred CCCCEEEcCCccCC-CCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccc
Q 044980 123 LLLEHIDLGQVHLG-KASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL 201 (313)
Q Consensus 123 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~ 201 (313)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-- 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH-- 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE--
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE--
Confidence 45666666666665 44555556666777777777776643 55667777777777777777666666666777777
Q ss_pred ccccccccccccc-cccccccCCCcCEEEccCCCCCCCcc---hhhhhhccccccCccEEEcc
Q 044980 202 LNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVKLSQDIS---QVLDIFSAYGTYALVSLILS 260 (313)
Q Consensus 202 L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~~~~~~L~~L~Ls 260 (313)
+++++| .+.+. .+..++.+++|++|++++|.+.+..+ ..+..++ +|+.|+++
T Consensus 93 L~ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-----~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-----QLTYLDGY 148 (149)
T ss_dssp EECTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-----TCCEETTB
T ss_pred EECCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-----CcccccCC
Confidence 777666 44442 33566777777888888777776544 3566666 67777664
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=7.3e-15 Score=116.88 Aligned_cols=136 Identities=20% Similarity=0.157 Sum_probs=104.9
Q ss_pred CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCC
Q 044980 47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLL 125 (313)
Q Consensus 47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L 125 (313)
..|.|.++.|... +++.+.. .-.++|+.|++++|.+.+..+..+.++++|++|++++|.+ ....+ .+..+++|
T Consensus 5 C~C~~~~l~~~~~--~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 5 CSCSGTEIRCNSK--GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKL 78 (177)
T ss_dssp CEEETTEEECCSS--CCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred CEeCCCEEEecCC--CCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCcc
Confidence 4488999999642 2333322 2447899999999998876666678899999999999986 22222 46788999
Q ss_pred CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc
Q 044980 126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP 188 (313)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 188 (313)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999988777777888999999999999985555556788999999999998886544
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=6.1e-17 Score=131.45 Aligned_cols=130 Identities=22% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhh
Q 044980 166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI 245 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (313)
.+..+++|++|++++|.+++ +| .+..+++|+. |++++| .+. .+|..+..+++|+.|++++|.+.+ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~--L~l~~n--~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRI--LSLGRN--LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCE--EEEEEE--EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCE--EECCCC--Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 33344444444444444443 33 3444444444 444444 222 234444455667777777777775 33 4666
Q ss_pred hccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCcc----------ccCCCCCCEeeCCCCcCcc
Q 044980 246 FSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPLS----------LGQISHLEYLDLSNNKFVT 310 (313)
Q Consensus 246 ~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~~----------l~~l~~L~~L~l~~n~l~~ 310 (313)
++ +|+.|++++|++++. +..+++|++|++++|.+.+.+|.. +..+++|++|| +|.++.
T Consensus 114 l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 114 LV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CC-----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 66 788888888887753 677888888888888887665542 67788898887 677765
Q ss_pred c
Q 044980 311 K 311 (313)
Q Consensus 311 ~ 311 (313)
+
T Consensus 187 ~ 187 (198)
T 1ds9_A 187 D 187 (198)
T ss_dssp T
T ss_pred H
Confidence 4
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=7e-14 Score=111.14 Aligned_cols=114 Identities=22% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980 123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202 (313)
Q Consensus 123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L 202 (313)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+. +
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE--L 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--E
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE--E
Confidence 35555555555555444444455555666666666555433444555666666666666665444444555555555 5
Q ss_pred cccccccccccccccccccCCCcCEEEccCCCCCCCcc
Q 044980 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS 240 (313)
Q Consensus 203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (313)
++++| .+....+..+..+++|++|++++|.+.+..+
T Consensus 106 ~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSS--CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCC--cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 55555 3443333445666777888888888776654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.3e-14 Score=114.75 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=94.4
Q ss_pred cEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEc
Q 044980 100 QYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL 178 (313)
Q Consensus 100 ~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 178 (313)
++++++++.+. .+| .+ .+.|++|++++|.++. +|..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 13 ~~l~~~~~~l~----~ip~~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK----VLPKGI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS----SCCSCC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC----cCCCCC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 57888888762 233 12 2578888888888874 4567888888888888888888766677888888888888
Q ss_pred cCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCC
Q 044980 179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ 237 (313)
Q Consensus 179 ~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (313)
++|.+++..|..|..+++|+. |++++| .+....+..+..+++|+.|++++|.+..
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRL--LSLHGN--DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCE--EECCSS--CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCccCEeCHHHhCCCCCCCE--EECCCC--CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888888777777777777777 777777 5555555566777777777777777654
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=3.2e-16 Score=147.81 Aligned_cols=207 Identities=13% Similarity=0.057 Sum_probs=133.0
Q ss_pred ccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCC-CchhhhhcCccCeeeccC---------cccCc
Q 044980 93 VGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKA-SDCWIYSLRHLFFIVLSY---------NQFQG 161 (313)
Q Consensus 93 l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~~~~ 161 (313)
+..+++|++|++++|.+ ....+. .+..+++|++|++++| ++.. .+.....+++|++|++.+ +.+++
T Consensus 285 ~~~~~~L~~L~L~~~~l--~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATV--QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HHHHTTCCEEECTTCCC--CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHhhCCCCEEEccCCCC--CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 33567788888877774 211222 2556778888888777 3322 222233577788887743 23332
Q ss_pred CCCCCC-CCCCCCCEEEccCCCCCCCCchhhh-cCccccccccccc--c--cccccc-----cccccccccCCCcCEEEc
Q 044980 162 KIPSTL-GNLTSLKQIDLSHNQFNFTSPGWLS-KLNELSSFLLNLV--S--CMVRFH-----QLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 162 ~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~~~L~l~--~--n~~~~~-----~~~~~~~~~~~~L~~L~l 230 (313)
.....+ ..+++|++|.+..+.+++..+..+. .+++|+. |+++ + ....+. ..++..+..+++|+.|++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~--L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR--FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE--EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce--eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 111112 2367888888877877765544554 4788888 7766 2 001222 123334667788999999
Q ss_pred cCCCCCCCcchhhhh-hccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCc-cccCCCCCCEeeC
Q 044980 231 SSVKLSQDISQVLDI-FSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPL-SLGQISHLEYLDL 303 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~-~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~-~l~~l~~L~~L~l 303 (313)
++ .+++..+..+.. ++ +|+.|++++|.+++. ...+++|++|++++|.+++..+. .+..+++|++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~-----~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAK-----KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CS-SCCHHHHHHHHHHCT-----TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cC-cccHHHHHHHHHhch-----hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 77 666655555554 45 899999999998765 26689999999999998754443 3455789999999
Q ss_pred CCCcCcc
Q 044980 304 SNNKFVT 310 (313)
Q Consensus 304 ~~n~l~~ 310 (313)
++|+++.
T Consensus 514 ~~~~~~~ 520 (594)
T 2p1m_B 514 SSCSVSF 520 (594)
T ss_dssp ESSCCBH
T ss_pred eCCCCCH
Confidence 9998853
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=9.7e-14 Score=112.00 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=100.7
Q ss_pred eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeecc
Q 044980 77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155 (313)
Q Consensus 77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (313)
.++++++.++ .+|..+. +.|++|++++|.+. .+ +.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 4555667766 4565543 68999999999862 33 478889999999999999998877788899999999999
Q ss_pred CcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 156 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
+|.+++..+..|..+++|++|++++|.++...+..+..+++|+. +++.+|
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N 136 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH--LAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE--EECCSS
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE--EEeCCC
Confidence 99999777778889999999999999998666667888999999 888888
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=1.2e-15 Score=143.90 Aligned_cols=230 Identities=16% Similarity=0.137 Sum_probs=114.4
Q ss_pred CCCcceecCCCCccccccccccc-CCCCCcEeeccCCCCCCCCCCchh-hccCCCCCEEEcCCccCCCCCchhhh----h
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSW-LSSLLLLEHIDLGQVHLGKASDCWIY----S 145 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~----~ 145 (313)
+++|+.|+++++.+++..+..+. .+++|++|++++|.. .....++. +.++++|++|++++|.+++..+.++. .
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45566666666665555444443 456666666666521 01111222 23566666666666665554443333 3
Q ss_pred cCccCeeeccCcc--cCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc--------------
Q 044980 146 LRHLFFIVLSYNQ--FQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM-------------- 208 (313)
Q Consensus 146 l~~L~~L~L~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~-------------- 208 (313)
+++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|+. +.+..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~--L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE--LGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE--EECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE--cccccccCccchhhHHHHHHH
Confidence 3456666666654 110 01111123466666666666322224444555555555 4322210
Q ss_pred ----c----------ccccccccccccCCCcCEEEccCCCCCCCcch-hhhhhccccccCccEEEccccccccc-----c
Q 044980 209 ----V----------RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQ-VLDIFSAYGTYALVSLILSHCQISAA-----L 268 (313)
Q Consensus 209 ----~----------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~ 268 (313)
. .....++..+..+++|++|++++|.+.+.... .+..++ +|+.|++++| +++. .
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~-----~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP-----KLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT-----TCCEEEEEGG-GHHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC-----CcCEEeCcCc-cCHHHHHHHH
Confidence 0 00111333334566777777777775533222 223344 7777777766 4322 2
Q ss_pred cCCCCCCEEEcc---------CCccccccCcccc-CCCCCCEeeCCCCcCcc
Q 044980 269 GKLSSLRNLDFS---------LNMLNGSIPLSLG-QISHLEYLDLSNNKFVT 310 (313)
Q Consensus 269 ~~~~~L~~L~l~---------~n~l~~~ip~~l~-~l~~L~~L~l~~n~l~~ 310 (313)
..+++|++|++. .+.+++.....+. .+++|++|+++.|.+++
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 346777777773 2344433222232 36777777777776654
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.6e-14 Score=112.77 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCCcceecCCCCcccccccccccCCC-CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 72 FGYLKYSDAEDDDHYMRSKLVVGNLS-NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 72 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
.++|+.|++++|.+.. ++. +..+. +|++|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC----EECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC----cccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3455555555555553 232 33333 5666666665541 123455555556666666555544333345555555
Q ss_pred eeeccCcccCcCCCC--CCCCCCCCCEEEccCCCCC
Q 044980 151 FIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQFN 184 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~ 184 (313)
+|++++|.++ .+|. .+..+++|+.|++++|.++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555555554 3343 4455555555555555554
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.7e-14 Score=110.83 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=47.2
Q ss_pred ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc--ccccCCCc
Q 044980 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT--SFIRLCKL 225 (313)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~--~~~~~~~L 225 (313)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++ |++++| .+. .+|. .+..+++|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~i~-~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE--LILTNN--SLV-ELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE--EECCSC--CCC-CGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE--EECCCC--cCC-cchhhHhhhcCCCC
Confidence 444444444444422 33444445555555555544322222344444444 444444 221 1222 34455566
Q ss_pred CEEEccCCCCCCCcch----hhhhhccccccCccEEEcccccc
Q 044980 226 TSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHCQI 264 (313)
Q Consensus 226 ~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n~l 264 (313)
+.|++++|.+... |. .+..++ +|+.|+++.|..
T Consensus 116 ~~L~l~~N~i~~~-~~~~~~~~~~l~-----~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 116 TYLCILRNPVTNK-KHYRLYVIYKVP-----QVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSSGGGGS-TTHHHHHHHHCT-----TCSEETTEECCH
T ss_pred CEEEecCCCCCCc-HhHHHHHHHHCC-----ccceeCCCcCCH
Confidence 6666666665532 32 244444 555555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=7.1e-16 Score=125.12 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=61.8
Q ss_pred hhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccccc
Q 044980 142 WIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIR 221 (313)
Q Consensus 142 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~ 221 (313)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+. |++++| .+.+ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~--L~L~~N--~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE--LWISYN--QIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE--EEEEEE--ECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE--EECcCC--cCCc-CC-cccc
Confidence 34444444444444444442 33 3444444555555544444 33444444444555 444444 2222 22 3444
Q ss_pred CCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEccccccccc--------------ccCCCCCCEEEccCCccc
Q 044980 222 LCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAA--------------LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 222 ~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------------~~~~~~L~~L~l~~n~l~ 285 (313)
+++|++|++++|.+.+..+ ..+..++ +|+.|++++|.+++. +..+++|+.|| +|.++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~-----~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALD-----KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTT-----TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCC-----CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555555665555554221 2344444 566666666655432 45566677665 44444
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.6e-13 Score=120.03 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEcc
Q 044980 122 LLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS 179 (313)
Q Consensus 122 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 179 (313)
+++|+.+++.. .++...+.+|..+++|+.+.+.+|.+....+..|..+.++..+...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 66666666666 5554444456666666666666666554444455555444444433
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=1.8e-13 Score=119.78 Aligned_cols=220 Identities=11% Similarity=0.044 Sum_probs=140.1
Q ss_pred CCcceecCCCCcccccccccccC-CCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhh------
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGN-LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS------ 145 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 145 (313)
.+++.|.++++ +...-...+.. +++|++|||++|.+....+. -..++.+..+.+..+.+.. ..|..
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~~I~~---~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMANFVPA---YAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTTEECT---TTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc---cccccccccccccccccCH---HHhcccccccc
Confidence 44666666543 11111112333 67788888888886211111 1112224555556664432 24677
Q ss_pred --cCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc---------------
Q 044980 146 --LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM--------------- 208 (313)
Q Consensus 146 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~--------------- 208 (313)
+.+|+.+.+.. .++..-+..|.++++|+.+++.+|.+....+..|..+.++.. +....+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~--l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF--IPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE--ECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE--ecCcchhhhhcccccccccccc
Confidence 99999999999 787566678999999999999999987555566666665655 4333210
Q ss_pred -cccc--------ccccc---------------------------cc-ccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980 209 -VRFH--------QLIPT---------------------------SF-IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251 (313)
Q Consensus 209 -~~~~--------~~~~~---------------------------~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (313)
..+. +.++. .+ ..+++|+.+++++|.+....+..|..+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~---- 250 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK---- 250 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT----
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC----
Confidence 0000 00000 00 1267899999998888765556677776
Q ss_pred cCccEEEccccccccc----ccCCCCCC-EEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 252 YALVSLILSHCQISAA----LGKLSSLR-NLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 252 ~~L~~L~Ls~n~l~~~----~~~~~~L~-~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+|+.+++..| +... |.++++|+ .+++.+ .++..-+..|.++++|+.+++++|.++
T Consensus 251 -~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 251 -YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp -TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred -CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 8999998887 5433 88888898 899887 666444568888889999998888765
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4.2e-12 Score=100.16 Aligned_cols=109 Identities=23% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980 124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203 (313)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~ 203 (313)
..+++++++|.++.. |..+ ..+|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++ |+
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~--L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ--LS 84 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE--EE
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE--EE
Confidence 357889999988764 3322 367899999999999777888888999999999999998766667788888888 88
Q ss_pred ccccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI 239 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (313)
+++| .+.+..+..+..+++|+.|++++|.+....
T Consensus 85 L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 85 LNDN--QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCSS--CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCC--ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888 666666667888888888888888887654
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.6e-14 Score=127.01 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=71.6
Q ss_pred CCCCEEEcCCccCCCCCchh-hhhcCccCeeeccCcccCcCCCCCC-----CCCCCCCEEEccCCCCCCC----Cchhhh
Q 044980 123 LLLEHIDLGQVHLGKASDCW-IYSLRHLFFIVLSYNQFQGKIPSTL-----GNLTSLKQIDLSHNQFNFT----SPGWLS 192 (313)
Q Consensus 123 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~ 192 (313)
++|++|++++|.++...... ...+.+|++|+|++|.++......+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 45555555555554322221 2233445555555555542211111 1245566666666655421 223334
Q ss_pred cCccccccccccccccccccc----ccccccccCCCcCEEEccCCCCCCCcchhh----hhhccccccCccEEEcccccc
Q 044980 193 KLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQVL----DIFSAYGTYALVSLILSHCQI 264 (313)
Q Consensus 193 ~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~~~~~~~~L~~L~Ls~n~l 264 (313)
..++|++ |++++| .+.. .++..+...++|++|++++|.+.+.....+ ...+ +|+.|+|++|.+
T Consensus 181 ~~~~L~~--L~Ls~N--~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-----~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTH--LSLLHT--GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-----SLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCE--EECTTS--SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-----SCCEEECTTSSC
T ss_pred cCCCcCE--EeCCCC--CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-----CCCEEeccCCCC
Confidence 4555666 666665 2221 134455666778888888888775433333 3334 788888888887
Q ss_pred ccc
Q 044980 265 SAA 267 (313)
Q Consensus 265 ~~~ 267 (313)
++.
T Consensus 252 ~~~ 254 (372)
T 3un9_A 252 SSE 254 (372)
T ss_dssp CHH
T ss_pred CHH
Confidence 755
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=3.2e-14 Score=126.44 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=120.2
Q ss_pred CCCCCEEEcCCccCCCCCchhhhhc-----CccCeeeccCcccCcCCCCCC-CCCCCCCEEEccCCCCCCCCchhhh---
Q 044980 122 LLLLEHIDLGQVHLGKASDCWIYSL-----RHLFFIVLSYNQFQGKIPSTL-GNLTSLKQIDLSHNQFNFTSPGWLS--- 192 (313)
Q Consensus 122 l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~--- 192 (313)
++.|+.|++++|.++......+... .+|++|+|++|.++......+ ..+++|++|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578889999988876544444444 579999999999874322222 2456899999999998754444432
Q ss_pred --cCccccccccccccccccccc----ccccccccCCCcCEEEccCCCCCCCcch----hhhhhccccccCccEEEcccc
Q 044980 193 --KLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHC 262 (313)
Q Consensus 193 --~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n 262 (313)
..+.|+. |++++| .+.. .++..+...++|++|++++|.+.+.... .+...+ +|+.|+|++|
T Consensus 151 ~~~~~~L~~--L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-----~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITT--LRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-----QLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCE--EECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-----CCCEEECCSS
T ss_pred HhcCCccce--eeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-----CcCeEECCCC
Confidence 3577888 888888 4332 2555567788899999999998764433 333333 8999999999
Q ss_pred ccccc--------ccCCCCCCEEEccCCccccccCccccCC---C--CCCEee--CCCCcCc
Q 044980 263 QISAA--------LGKLSSLRNLDFSLNMLNGSIPLSLGQI---S--HLEYLD--LSNNKFV 309 (313)
Q Consensus 263 ~l~~~--------~~~~~~L~~L~l~~n~l~~~ip~~l~~l---~--~L~~L~--l~~n~l~ 309 (313)
.+++. +...++|++|+|++|.|++.....+... . .++.+. +..|.++
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 98764 4456889999999999886444444322 2 266666 6666654
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=8.5e-12 Score=98.40 Aligned_cols=102 Identities=21% Similarity=0.153 Sum_probs=84.1
Q ss_pred CCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEE
Q 044980 98 NLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQI 176 (313)
Q Consensus 98 ~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 176 (313)
..+++++++|.+. .+| .+ .+.|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 10 ~~~~l~~s~n~l~----~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLA----SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCS----SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcC----ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3578899988862 233 22 3788999999999998888888899999999999999986666667889999999
Q ss_pred EccCCCCCCCCchhhhcCccccccccccccc
Q 044980 177 DLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 177 ~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
++++|.+++..+..+..+++|+. |++++|
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N 112 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTH--IWLLNN 112 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCE--EECCSS
T ss_pred ECCCCccCEeCHHHhcCCCCCCE--EEeCCC
Confidence 99999998776667888999999 888888
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=9.8e-12 Score=98.45 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=86.1
Q ss_pred CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204 (313)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l 204 (313)
-+.+++++|.++.. |..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+. |++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~--L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ--LDL 88 (174)
T ss_dssp SSEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred CcEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE--EEC
Confidence 37889999988654 4322 367999999999999777888889999999999999998766666788888888 888
Q ss_pred cccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI 239 (313)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (313)
++| .+..+.+..+..+++|++|++++|.+....
T Consensus 89 ~~N--~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 89 NDN--HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CSS--CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCC--ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888 666655556888888888888888887653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.8e-11 Score=96.96 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=82.3
Q ss_pred CcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980 99 LQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID 177 (313)
Q Consensus 99 L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 177 (313)
-+.+++++|.+ ..+| .+ .+.|++|++++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 14 ~~~l~~~~n~l----~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRL----ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCC----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCC----CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 36788988886 3333 23 27899999999999988888888999999999999999865555678899999999
Q ss_pred ccCCCCCCCCchhhhcCccccccccccccc
Q 044980 178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207 (313)
Q Consensus 178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n 207 (313)
+++|.+.+..+..+..+++|+. +++++|
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~--L~L~~N 115 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTH--IYLYNN 115 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSE--EECCSS
T ss_pred CCCCccceeCHHHhccccCCCE--EEeCCC
Confidence 9999998666666888999999 888888
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=1.2e-10 Score=104.38 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=110.5
Q ss_pred CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeee
Q 044980 74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153 (313)
Q Consensus 74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (313)
+|+.+.+..+ +...-..+|.+ ..|+.+.+.. .+ ..-.-.+|.+|++|+.+++..|.++......+. ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 4555555433 33333334544 3466666654 21 111112466677777777776666554444444 35666666
Q ss_pred ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCC
Q 044980 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV 233 (313)
Q Consensus 154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 233 (313)
+..+ ++..-...|.++++|+.+++..+ ++......|.+ .+|+. +.+..+ +..+-...|.++.+|+.+.+.+|
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~--i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT--VKLPNG---VTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE--EEEETT---CCEECTTTTTTCTTCCEEEEESS
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE--EEeCCC---ccEEChhHhhCCCCCCEEEeCCc
Confidence 6643 44344455666667777776653 33222334444 45666 555332 33334556666677777777666
Q ss_pred CCCC-----CcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980 234 KLSQ-----DISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS 304 (313)
Q Consensus 234 ~l~~-----~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~ 304 (313)
.+.. ..+..+..+. +|+.+.+.. .++.. |.++++|+.+++..| ++..-...|.++ +|+.+++.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~-----~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCP-----KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp CCCCCTTCEECTTTTTTCT-----TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred cccCCcccEECHHHhhCCc-----cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 5541 1122333333 666666653 23322 666666666666443 442334455555 66666666
Q ss_pred CCcC
Q 044980 305 NNKF 308 (313)
Q Consensus 305 ~n~l 308 (313)
+|.+
T Consensus 354 ~n~~ 357 (401)
T 4fdw_A 354 GTTP 357 (401)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6654
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=2.2e-10 Score=102.65 Aligned_cols=218 Identities=10% Similarity=0.009 Sum_probs=156.1
Q ss_pred CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980 73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152 (313)
Q Consensus 73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (313)
..|+.+.+.. .+...-+.+|.+|++|+.+++..|.+..... .+|. +..|+.+.+..+ +......+|..+.+|+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech--hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 4577777765 5555555678999999999999888622111 1344 589999999855 655555678899999999
Q ss_pred eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccc---cccccccccccCCCcCEEE
Q 044980 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR---FHQLIPTSFIRLCKLTSID 229 (313)
Q Consensus 153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~---~~~~~~~~~~~~~~L~~L~ 229 (313)
.+..+ ++..-...|.+ .+|+.+.+. +.+.......|.++.+|+. +.+.++... ...+-+..|.++.+|+.++
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~--l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAE--VTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCE--EEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCE--EEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 99875 44344455666 789999994 4455455678899999999 888776221 1134566788999999999
Q ss_pred ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCC-CCCEeeCC
Q 044980 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQIS-HLEYLDLS 304 (313)
Q Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~-~L~~L~l~ 304 (313)
+.. .+.......+..+. +|+.+.+..+ ++.. |.++ +|+.+++.+|.+....+..|.+++ +++.+.+.
T Consensus 307 l~~-~i~~I~~~aF~~c~-----~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 307 IPE-SIRILGQGLLGGNR-----KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCT-TCCEECTTTTTTCC-----SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred eCC-ceEEEhhhhhcCCC-----CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 984 46544445566666 8999999654 4432 8888 999999999988755555677774 68888887
Q ss_pred CCcC
Q 044980 305 NNKF 308 (313)
Q Consensus 305 ~n~l 308 (313)
.+.+
T Consensus 379 ~~~~ 382 (401)
T 4fdw_A 379 AESV 382 (401)
T ss_dssp GGGH
T ss_pred HHHH
Confidence 6643
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=1.2e-10 Score=102.49 Aligned_cols=96 Identities=18% Similarity=0.040 Sum_probs=74.5
Q ss_pred cccccccccccCCCCCcEeeccC-CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCc
Q 044980 84 DHYMRSKLVVGNLSNLQYLDLSW-IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG 161 (313)
Q Consensus 84 ~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (313)
.++. +|. +..+++|++|+|++ |.+ .+..+ .|.++++|++|+|++|.+++..|..+..+++|++|+|++|.+++
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence 4543 677 88888899999986 875 22222 58888999999999999988888888899999999999999985
Q ss_pred CCCCCCCCCCCCCEEEccCCCCCC
Q 044980 162 KIPSTLGNLTSLKQIDLSHNQFNF 185 (313)
Q Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~ 185 (313)
..+..+..++ |+.|++.+|.+..
T Consensus 95 ~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 95 LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCHHHcccCC-ceEEEeeCCCccC
Confidence 4444455444 9999999998864
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=4.1e-10 Score=98.95 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=89.0
Q ss_pred CEEEcCCc-cCCCCCchhhhhcCccCeeeccC-cccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980 126 EHIDLGQV-HLGKASDCWIYSLRHLFFIVLSY-NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203 (313)
Q Consensus 126 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~ 203 (313)
..++++++ .++. +|. +..+.+|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|+. |+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR--LN 86 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE--EE
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE--Ee
Confidence 45688887 7876 466 88888999999996 9999777788999999999999999999888888999999999 99
Q ss_pred ccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238 (313)
Q Consensus 204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (313)
+++| .+.++.+..+..+. |+.|++.+|.+...
T Consensus 87 l~~N--~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 87 LSFN--ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSS--CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCC--ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999 66665555566555 99999999998754
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=2.8e-10 Score=100.41 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=83.3
Q ss_pred hhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh--cCcccccccccccc--cccc----cc
Q 044980 141 CWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS--KLNELSSFLLNLVS--CMVR----FH 212 (313)
Q Consensus 141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~~~L~l~~--n~~~----~~ 212 (313)
..+..+++|+.|.+++|.-. .++. + .+++|+.|++..+.+.......+. .+++|+. |.++. +... +.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~--L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK--LVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCE--EEEECBCGGGTCCSCGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcE--EEEeccccccccchhHH
Confidence 34455566666666655211 2232 2 256677777766665433222333 4566666 44321 1000 00
Q ss_pred ccccccc--ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCC
Q 044980 213 QLIPTSF--IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLN 282 (313)
Q Consensus 213 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n 282 (313)
. +...+ ..+++|++|++.+|.+.+..+..+...+ .+++|+.|+|+.|.+.+. +..+++|+.|++++|
T Consensus 241 ~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~--~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 V-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp G-TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS--SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred H-HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc--cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0 11111 2456788888888777654444444322 234788888888877663 234677888888888
Q ss_pred ccccccCccccC-CCCCCEeeCCCCc
Q 044980 283 MLNGSIPLSLGQ-ISHLEYLDLSNNK 307 (313)
Q Consensus 283 ~l~~~ip~~l~~-l~~L~~L~l~~n~ 307 (313)
.+++..-..+.. + ...++++.++
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 777543333332 2 3456666654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.1e-09 Score=94.88 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=81.2
Q ss_pred hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC--CCCCCCCEEEccC--CCCCCC-----Cch
Q 044980 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL--GNLTSLKQIDLSH--NQFNFT-----SPG 189 (313)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~~-----~p~ 189 (313)
+..+++|+.|+++++.-. ..+. + .+++|++|.+..+.++......+ ..+++|+.|+|+. +...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 445566666666655211 1111 2 25566666666655442211122 2456666666542 111111 011
Q ss_pred hh--hcCccccccccccccccccccccccccc---ccCCCcCEEEccCCCCCCCcchhh----hhhccccccCccEEEcc
Q 044980 190 WL--SKLNELSSFLLNLVSCMVRFHQLIPTSF---IRLCKLTSIDFSSVKLSQDISQVL----DIFSAYGTYALVSLILS 260 (313)
Q Consensus 190 ~~--~~l~~L~~~~L~l~~n~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l----~~~~~~~~~~L~~L~Ls 260 (313)
.+ ..+++|+. |.+.+| .+....+..+ ..+++|++|+++.|.+.+..+..+ ..++ +|+.|+++
T Consensus 245 ~l~~~~~p~Lr~--L~L~~~--~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-----~L~~L~L~ 315 (362)
T 2ra8_A 245 LFSKDRFPNLKW--LGIVDA--EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-----HLKFINMK 315 (362)
T ss_dssp GSCTTTCTTCCE--EEEESC--TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-----TCSEEECC
T ss_pred HHhcCCCCCcCE--EeCCCC--CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-----cceEEECC
Confidence 11 13566666 666555 2221111112 246789999999999887543333 3445 89999999
Q ss_pred ccccccc-ccCCCC--CCEEEccCCc
Q 044980 261 HCQISAA-LGKLSS--LRNLDFSLNM 283 (313)
Q Consensus 261 ~n~l~~~-~~~~~~--L~~L~l~~n~ 283 (313)
+|.+++. ...+.. ...+++++++
T Consensus 316 ~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred CCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 9998876 222221 4678998887
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=3.7e-09 Score=88.87 Aligned_cols=151 Identities=14% Similarity=0.065 Sum_probs=90.5
Q ss_pred CCcccCceEecCCCCCEEEEecCC--------CCC-----Ccc-eecCCCCccccccccc-ccCCCCCcE--eeccCCCC
Q 044980 47 DCCKWVGNFCNNLTGHILELNLEN--------PFG-----YLK-YSDAEDDDHYMRSKLV-VGNLSNLQY--LDLSWIDC 109 (313)
Q Consensus 47 ~~c~~~~v~c~~~~~~v~~l~l~~--------~l~-----~L~-~L~l~~n~~~~~~~~~-l~~l~~L~~--L~L~~n~~ 109 (313)
..|.|.|+.|.....+|..+...+ .++ .|+ .+...+|.....+... +...+.|+. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 357899999976444554333221 111 111 1222233333322221 334444554 55555542
Q ss_pred CCCCCCchh-hccCCCCCEEEcCCccCCC--CCchhhhhcCccCeeeccCcccCcCCCCCCCCCC--CCCEEEccCCCCC
Q 044980 110 RLHVDSLSW-LSSLLLLEHIDLGQVHLGK--ASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLT--SLKQIDLSHNQFN 184 (313)
Q Consensus 110 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~ 184 (313)
......++. ..++++|++|++++|.+++ .++..+..+++|++|+|++|.+.+. ..+..+. +|++|++.+|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 111111221 2468899999999999988 4456677899999999999999854 2233333 8999999999998
Q ss_pred CCCc-------hhhhcCccccc
Q 044980 185 FTSP-------GWLSKLNELSS 199 (313)
Q Consensus 185 ~~~p-------~~~~~l~~L~~ 199 (313)
+.+| ..+..+++|+.
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~ 255 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLR 255 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCE
T ss_pred cccCcchhHHHHHHHHCcccCe
Confidence 7665 24667788887
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2.4e-08 Score=79.63 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCCCCCCCCCEEEccCC-CCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhh
Q 044980 165 STLGNLTSLKQIDLSHN-QFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL 243 (313)
Q Consensus 165 ~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (313)
..+...+.|++|++++| .+....... +...+...++|++|++++|.+.+.....+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~------------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l 85 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKA------------------------CAEALKTNTYVKKFSIVGTRSNDPVAFAL 85 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHH------------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHH------------------------HHHHHHhCCCcCEEECcCCCCChHHHHHH
Confidence 34556788888998888 765321111 22223344567777777777765433333
Q ss_pred hhhccccccCccEEEccccccccc--------ccCCCCCCEEEc--cCCccccc----cCccccCCCCCCEeeCCCCcCc
Q 044980 244 DIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDF--SLNMLNGS----IPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 244 ~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l--~~n~l~~~----ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
...-. ..++|+.|+|++|.+.+. +...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 86 ~~~L~-~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 86 AEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22211 112677777777777654 555667888888 77777753 3344455577888888888764
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=2.9e-06 Score=75.67 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=36.3
Q ss_pred CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980 253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n 306 (313)
+|+.+.+..+ ++.. |.++.+|+.+++..+ ++..-...|.++.+|+.+++..+
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 6777777543 3221 778889999998754 55333457788889999988765
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=2.7e-07 Score=77.49 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=65.1
Q ss_pred ccCCCcCEEEccCCCCCC--CcchhhhhhccccccCccEEEccccccccc--ccCCC--CCCEEEccCCccccccCc---
Q 044980 220 IRLCKLTSIDFSSVKLSQ--DISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLS--SLRNLDFSLNMLNGSIPL--- 290 (313)
Q Consensus 220 ~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~--~L~~L~l~~n~l~~~ip~--- 290 (313)
.++++|+.|+|++|.+.+ .++..+..++ +|+.|+|++|++.+. +..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-----~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-----NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-----TCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-----CCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchh
Confidence 567889999999999998 5566777788 999999999999886 44444 899999999999987763
Q ss_pred ----cccCCCCCCEeeC
Q 044980 291 ----SLGQISHLEYLDL 303 (313)
Q Consensus 291 ----~l~~l~~L~~L~l 303 (313)
.+..+|+|+.||-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 4667899998874
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.1e-07 Score=75.67 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=76.3
Q ss_pred hhhhcCccCeeeccCc-ccCcC----CCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccc
Q 044980 142 WIYSLRHLFFIVLSYN-QFQGK----IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216 (313)
Q Consensus 142 ~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~ 216 (313)
.+...+.|++|+|++| .+... +...+...++|++|++++|.+....... +.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~------------------------l~ 86 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA------------------------LA 86 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH------------------------HH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH------------------------HH
Confidence 4566778999999999 88632 3445566789999999999986432111 12
Q ss_pred cccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEc--cccccccc--------ccCCCCCCEEEccCCccc
Q 044980 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL--SHCQISAA--------LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L--s~n~l~~~--------~~~~~~L~~L~l~~n~l~ 285 (313)
..+...++|++|++++|.+.+.....+...-. ..++|+.|+| ++|.+... +...++|++|++++|.+.
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22333456777777777776543333322211 1226777777 67777654 445577888888888775
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.28 E-value=1.4e-05 Score=71.24 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=33.0
Q ss_pred CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCc
Q 044980 253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307 (313)
Q Consensus 253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~ 307 (313)
+|+.+.+..+ ++.. |.++.+|+.+.+..+ ++..-...|.++++|+.+++.++.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6777777543 2221 777777777777544 542333466777777777777653
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=9.6e-06 Score=72.29 Aligned_cols=211 Identities=15% Similarity=0.125 Sum_probs=97.1
Q ss_pred CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980 71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150 (313)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 150 (313)
++++|+.+.+..+- ...-..+|.++..|+.+.+..+-- ...-.++.++..|+.+.+..+... +........+|+
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~---~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~ 233 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLK---IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK 233 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCC---EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCce---EeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence 56778888886543 223344677888888888876521 111124666777777666554321 111122334566
Q ss_pred eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230 (313)
Q Consensus 151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 230 (313)
.+.+.... +..-...+..+..++.+.+..+... .....+..+..++. +..... . .....+..+.+|+.+.+
T Consensus 234 ~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~--~~~~~~--~---i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 234 NIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKK--VIYGSV--I---VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp EEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCE--EEECSS--E---ECTTTTTTCTTCCEEEE
T ss_pred eEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccce--eccCce--e---ecccccccccccccccc
Confidence 66554332 2122344555666666666554321 22223444444444 322221 0 11123344445555554
Q ss_pred cCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS 304 (313)
Q Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~ 304 (313)
..+ +.......+..+. +|+.+++..+ ++.. |.++.+|+.+++..+ +...-...|.++++|+.+++.
T Consensus 305 ~~~-i~~I~~~aF~~c~-----~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCT-----SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTT-CCEECTTTTTTCT-----TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccc-cceechhhhcCCC-----CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 332 2211122233333 4555555322 2211 455555555555444 332223344555555555543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=4.9e-07 Score=70.73 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=36.5
Q ss_pred CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCC----CCCCEEEccCCc-cccccCcccc
Q 044980 224 KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKL----SSLRNLDFSLNM-LNGSIPLSLG 293 (313)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~----~~L~~L~l~~n~-l~~~ip~~l~ 293 (313)
+|+.|+++++.+++.....+..++ +|+.|+|++|. +++. +..+ ++|++|+|++|. +++.--..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-----~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-----YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-----CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-----CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 455555555554443333333333 55555555553 4433 3222 245555555553 4443333344
Q ss_pred CCCCCCEeeCCCC
Q 044980 294 QISHLEYLDLSNN 306 (313)
Q Consensus 294 ~l~~L~~L~l~~n 306 (313)
.+++|++|++++|
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 4555555555554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=1.8e-06 Score=67.45 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=55.8
Q ss_pred CCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCcc-CCCCCchhhhhc----CccCeeeccCcc-cCcCCCCCCCCC
Q 044980 97 SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVH-LGKASDCWIYSL----RHLFFIVLSYNQ-FQGKIPSTLGNL 170 (313)
Q Consensus 97 ~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l 170 (313)
..|++||++++.+ ....+..+.++++|++|++++|. +++..-..+..+ ++|++|++++|. ++..--..+..+
T Consensus 61 ~~L~~LDLs~~~I--td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCI--MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCC--CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCc--cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4577777777764 44445556777888888887774 555444445543 358888888875 553322345667
Q ss_pred CCCCEEEccCCC
Q 044980 171 TSLKQIDLSHNQ 182 (313)
Q Consensus 171 ~~L~~L~l~~n~ 182 (313)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888999988886
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=0.00014 Score=64.74 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhh
Q 044980 166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI 245 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (313)
.|.++.+|+.+.+..+... .....|.++..|+. +.+... +..+-...|.++.+|+.+.+..+ ++......+..
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~--i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQD--IEFSSR---ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCE--EECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred eeeecccccEEecccccce-ecCccccccccccc--ccCCCc---ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 3445555666655443321 22234556666666 555442 33344556788889999998654 33222334555
Q ss_pred hccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980 246 FSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309 (313)
Q Consensus 246 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~ 309 (313)
+. +|+.+.+..+ ++.. |.++++|+.+++.++.... ..+.....|+.+.+..+.+.
T Consensus 333 C~-----~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 CE-----QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CT-----TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CC-----CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 55 8999999654 4322 8999999999999886542 35667788999988876553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=0.0014 Score=57.62 Aligned_cols=103 Identities=9% Similarity=0.111 Sum_probs=53.3
Q ss_pred hhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---
Q 044980 191 LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--- 267 (313)
Q Consensus 191 ~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--- 267 (313)
+.++..|+. +.+..+ +..+-...+.++.+|+.+.+..+ +.......+..+. +|+.+.+.++.++..
T Consensus 236 f~~~~~L~~--i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-----~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 236 FYGMKALDE--IAIPKN---VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-----NLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp TTTCSSCCE--EEECTT---CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-----TCCEEEECCTTCCEECTT
T ss_pred ccCCccceE--EEcCCC---ccEeCccccceeehhcccccccc-ceecccccccccc-----ccccccccccccceehhh
Confidence 444445555 444332 22223334555556666665432 2211122233333 777777776655432
Q ss_pred -ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980 268 -LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN 305 (313)
Q Consensus 268 -~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~ 305 (313)
|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777777777777644 4422234566677777776643
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=4.6e-05 Score=60.65 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=77.3
Q ss_pred hhcCccccccccccccc-ccccc--cccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980 191 LSKLNELSSFLLNLVSC-MVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267 (313)
Q Consensus 191 ~~~l~~L~~~~L~l~~n-~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 267 (313)
+.+-+.|+. |++++| ...-. ..+-+.+...+.|+.|+|++|.+.+.....+...-. ....|+.|+|+.|.|.+.
T Consensus 37 l~~n~~L~~--L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKE--VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCE--EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccE--EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHH
Confidence 344577888 777763 22211 125556677788999999999997654444433221 112899999999999866
Q ss_pred --------ccCCCCCCEEEccCC---cccc----ccCccccCCCCCCEeeCCCCcC
Q 044980 268 --------LGKLSSLRNLDFSLN---MLNG----SIPLSLGQISHLEYLDLSNNKF 308 (313)
Q Consensus 268 --------~~~~~~L~~L~l~~n---~l~~----~ip~~l~~l~~L~~L~l~~n~l 308 (313)
+...+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 666678999999865 3443 3445566678899999987764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=5.6e-05 Score=60.14 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=78.4
Q ss_pred CCCCCCCCCEEEccCC-CCCCC----CchhhhcCcccccccccccccccccc--cccccccccCCCcCEEEccCCCCCCC
Q 044980 166 TLGNLTSLKQIDLSHN-QFNFT----SPGWLSKLNELSSFLLNLVSCMVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQD 238 (313)
Q Consensus 166 ~~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (313)
.+.+-+.|++|+|++| .+... +...+..-+.|+. |++++|...-. ..+.+.+...+.|+.|+|++|.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~--L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEK--FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCE--EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCE--EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3345678999999986 66532 2344556678888 88888822211 12555666778899999999999876
Q ss_pred cchhhhhhccccccCccEEEcccc---ccccc--------ccCCCCCCEEEccCCccc
Q 044980 239 ISQVLDIFSAYGTYALVSLILSHC---QISAA--------LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 239 ~~~~l~~~~~~~~~~L~~L~Ls~n---~l~~~--------~~~~~~L~~L~l~~n~l~ 285 (313)
....+...-.. ...|+.|+|++| .+... +...+.|+.|+++.|.+.
T Consensus 114 Ga~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 55555443322 226999999865 34432 566688999999887654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.33 E-value=0.0007 Score=59.67 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=61.8
Q ss_pred hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccc
Q 044980 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELS 198 (313)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 198 (313)
+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 445556666665443 22222223555556666666544 33233344555666666665433 2222223455566666
Q ss_pred cccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcc
Q 044980 199 SFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILS 260 (313)
Q Consensus 199 ~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls 260 (313)
. +.+..+ .+..+-...|.++.+|+.+.+..+ +.......+..+. +|+.+.+.
T Consensus 290 ~--i~l~~~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-----~L~~i~ip 341 (379)
T 4h09_A 290 K--VVMDNS--AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-----ALSTISYP 341 (379)
T ss_dssp E--EEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-----TCCCCCCC
T ss_pred c--cccccc--ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-----CCCEEEEC
Confidence 6 555443 233333445666666666666433 2222222333333 56666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0042 Score=45.87 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=27.8
Q ss_pred CEEEccCCCCC-CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980 226 TSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN 285 (313)
Q Consensus 226 ~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~ 285 (313)
..++.+++.++ ..+|..+. . +|+.|+|++|+|+.. |..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~-----~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--V-----DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--T-----TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--c-----CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666664 23332211 1 466666666665544 455556666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.011 Score=43.55 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=15.1
Q ss_pred cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCC
Q 044980 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183 (313)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (313)
|++|+|++|.++..-+..|..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444422223334444444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.87 E-value=32 Score=23.32 Aligned_cols=39 Identities=13% Similarity=-0.035 Sum_probs=17.8
Q ss_pred cccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcC
Q 044980 90 KLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG 131 (313)
Q Consensus 90 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 131 (313)
..+|.+|..|+.+.|..+- ..-.-.+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI---GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCch---heEcHHHHhccCCccEEEEc
Confidence 3445566666666654332 01111234555555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.79 E-value=57 Score=22.02 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=5.7
Q ss_pred hccCCCCCEEEcC
Q 044980 119 LSSLLLLEHIDLG 131 (313)
Q Consensus 119 ~~~l~~L~~L~l~ 131 (313)
|.+|..|+.+.+-
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4444444444443
Done!