BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044983
         (428 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
          Length = 313

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 94  FIKAKETKLRNCYAATIRNLGSDEFVAMVLVDAVFLIEFFLRFYKRNFRTVDDRIFGKPQ 153
           F  A+E       A T++ LG+D F+ + L D  +         KR   T +D +F  P 
Sbjct: 23  FHTAREMANAKAIATTVKTLGAD-FI-LSLGDNFYFTGVHDAKDKRFQETFED-VFSDPS 79

Query: 154 LRNEIWH 160
           LRN  WH
Sbjct: 80  LRNVPWH 86


>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
 pdb|2ASI|A Chain A, Aspartic Proteinase
          Length = 361

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 271 GSTKNLLDIN-FNQGILEIPFFKVYENTQRA 300
           GST N + +N + QG++  P F VY NT   
Sbjct: 148 GSTYNTVHVNLYKQGLISSPLFSVYMNTNSG 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,953,906
Number of Sequences: 62578
Number of extensions: 491858
Number of successful extensions: 1157
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 3
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)