BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044983
         (428 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 195/430 (45%), Gaps = 48/430 (11%)

Query: 30  KDCSIYRVAEPKRCLNPRHFTPQMVSIGPFHHGKEELKPMEEHKQRYLKYFLQRTKVSMA 89
           + C I+RV E    LNP+ + P++VSIGP+H+G++ L+ +++HK R L+ FL   K    
Sbjct: 44  ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDV 103

Query: 90  SFLGFIKAK---ETKLRNCYAATIRNLGSDEFVAMVLVDAVFLIEFFLRFYKRNFRTVDD 146
                +KA    E K+R  Y+  ++  G D    MVL D  F++  FL     N    +D
Sbjct: 104 EENVLVKAVVDLEDKIRKSYSEELKT-GHDLMFMMVL-DGCFILMVFL-IMSGNIELSED 160

Query: 147 RIFGKPQLRNEIWHDFLLLENQLPLFILYDLFDLAKTATYEDAFYENISFVKITCFWFRN 206
            IF  P L + I  D LLLENQ+P F+L  L+  +K     D         +I   +F+N
Sbjct: 161 PIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD-------LNRIAFHFFKN 213

Query: 207 HVLGFLPLDENS--LEIHFS-KAEHFLDLIILCLQPSQSRA--------QITL---KDQN 252
                 P+D+     E H + KA+H LDLI     P+ S +        Q+ L   K  N
Sbjct: 214 ------PIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGN 267

Query: 253 IPSVEE-----------LHEAGVKFKPAAGSTKNLLDINFNQGILEIPFFKVYENTQRAY 301
           +PSV+            L   G+KF+       ++L++   +  L+IP  +        +
Sbjct: 268 VPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFF 327

Query: 302 RNLLAFESMH-GYKKYFNDYIIMTACLISCPKDAELLVQNEVI---RLGNTETVPTVFRN 357
            N +AFE  +         YI+   CL++  +D   L  +++I     G+   V   F+ 
Sbjct: 328 LNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKT 387

Query: 358 LDPDCTLNSYNFQYSGVVTNLQAYRKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLT 417
           +  D          + V   +  Y K  ++   A  +  +F +PW  +S  A + ++LLT
Sbjct: 388 ISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLT 447

Query: 418 ATQIVSSLIA 427
             Q   ++++
Sbjct: 448 MLQSTVAILS 457


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 16/227 (7%)

Query: 17  TLSAKLETLHHLSK-DCSIYRVAEPKRCLNPRHFTPQMVSIGPFHHGKEELKPMEEHKQR 75
           +L A+LE  H L +   SI+ V +   C +P  +TP  VSIGP+H  K EL  ME +K  
Sbjct: 28  SLDAELEE-HDLEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLM 86

Query: 76  YLKYFL-QRTKVSMASFLGFIKAKETKLRNCYAATIRNLGSDEFVAMVLVDAVFLIEFFL 134
             +    Q         +  +++ E K+R CY   I     +  + ++ VD+ FLIEF  
Sbjct: 87  IARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYI-GFNGETLLWIMAVDSSFLIEFLK 145

Query: 135 RFYKRNFRTVDDRIFGKPQLRNEIWHDFLLLENQLPLFILYDL--FDLAKTATYEDAFYE 192
            +  R   T+ +R+       NEI  D +++ENQ+PLF+L     F L  T + +D    
Sbjct: 146 IYSFRKVETLINRVG-----HNEILRDIMMIENQIPLFVLRKTLEFQLESTESADDLL-- 198

Query: 193 NISFVKITCFWFRNHVLGFLPLDENSLEIHFSKAEHFLDLIILCLQP 239
            +S +   C      V+ F   D+  L+  F +  H LD +   + P
Sbjct: 199 -LSVLTGLCKDLSPLVIKF--DDDQILKAQFQECNHILDFLYQMIVP 242



 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 248 LKDQNIPSVEELHEAGVKFKPAAGSTKNLLDINFNQGILEIPFFKVYENTQRAYRNLLAF 307
           +++  IPSV +LH+AGV+FKP A    + +  + N G   +P   +  NT+   RNL+A+
Sbjct: 340 VEELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAY 399

Query: 308 ESMHGYKK-YFNDYIIMTACLISCPKDAELLVQNEVI--RLGNTETVPTVFRNLDPDCTL 364
           E+ +      F  Y  +   +I   +D  LL +  V+  RL + +    ++  +     L
Sbjct: 400 EATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL 459

Query: 365 NSYNFQYSGVVTNLQAYRKLPWHKWKATLKQNYFNTPW 402
               F     + ++  Y    W      L + Y    W
Sbjct: 460 TKVGF-LDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,305,692
Number of Sequences: 539616
Number of extensions: 6328294
Number of successful extensions: 17266
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17257
Number of HSP's gapped (non-prelim): 4
length of query: 428
length of database: 191,569,459
effective HSP length: 120
effective length of query: 308
effective length of database: 126,815,539
effective search space: 39059186012
effective search space used: 39059186012
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)