Query 044983
Match_columns 428
No_of_seqs 124 out of 674
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 8E-108 2E-112 837.3 33.3 372 34-417 1-391 (391)
2 COG4575 ElaB Uncharacterized c 65.2 5.9 0.00013 33.0 2.7 19 400-419 82-100 (104)
3 PRK10132 hypothetical protein; 59.3 9.3 0.0002 32.3 2.9 19 400-419 85-103 (108)
4 PRK10404 hypothetical protein; 57.7 10 0.00022 31.6 2.9 25 391-419 73-97 (101)
5 PF07438 DUF1514: Protein of u 57.0 12 0.00026 28.4 2.8 21 402-422 2-22 (66)
6 PF12911 OppC_N: N-terminal TM 55.7 15 0.00033 26.5 3.2 33 394-426 9-41 (56)
7 PF14770 TMEM18: Transmembrane 54.2 14 0.00029 32.0 3.1 48 375-425 55-102 (123)
8 PF14579 HHH_6: Helix-hairpin- 46.8 77 0.0017 25.4 6.4 80 263-347 1-84 (90)
9 PF09069 EF-hand_3: EF-hand; 45.9 56 0.0012 26.7 5.3 55 71-125 2-76 (90)
10 PF05421 DUF751: Protein of un 37.8 55 0.0012 24.7 3.8 31 396-426 29-59 (61)
11 PHA02103 hypothetical protein 37.0 72 0.0016 26.8 4.7 78 264-344 6-102 (135)
12 PHA02680 ORF090 IMV phosphoryl 36.9 51 0.0011 26.7 3.6 29 400-428 43-71 (91)
13 KOG3110 Riboflavin kinase [Coe 36.7 29 0.00064 30.4 2.5 59 49-107 65-138 (153)
14 PF15103 G0-G1_switch_2: G0/G1 36.4 36 0.00078 28.3 2.8 24 404-427 28-51 (102)
15 PF05957 DUF883: Bacterial pro 36.3 35 0.00076 27.6 2.8 20 399-419 71-90 (94)
16 PF11293 DUF3094: Protein of u 34.3 1E+02 0.0022 22.7 4.5 36 375-415 9-44 (55)
17 PF10961 DUF2763: Protein of u 32.7 57 0.0012 26.6 3.5 26 400-425 14-42 (91)
18 PF04971 Lysis_S: Lysis protei 32.6 68 0.0015 24.8 3.6 33 388-420 19-51 (68)
19 cd00948 FBP_aldolase_I_a Fruct 28.8 1.1E+02 0.0024 30.9 5.3 81 334-420 82-166 (330)
20 PF11446 DUF2897: Protein of u 25.1 85 0.0018 23.2 2.9 21 400-420 4-24 (55)
21 PF05767 Pox_A14: Poxvirus vir 24.8 98 0.0021 25.2 3.4 27 400-426 42-68 (92)
22 smart00413 ETS erythroblast tr 23.0 92 0.002 25.3 3.0 42 340-386 28-69 (87)
23 PF04531 Phage_holin_1: Bacter 22.8 77 0.0017 25.4 2.5 23 398-420 8-30 (84)
24 PHA02898 virion envelope prote 21.3 1.3E+02 0.0028 24.4 3.5 27 400-426 42-68 (92)
25 PHA03048 IMV membrane protein; 20.8 1.4E+02 0.0031 24.2 3.6 28 400-427 41-68 (93)
26 cd00925 Cyt_c_Oxidase_VIa Cyto 20.7 99 0.0021 25.0 2.7 25 400-424 14-38 (86)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=7.9e-108 Score=837.30 Aligned_cols=372 Identities=42% Similarity=0.730 Sum_probs=332.8
Q ss_pred eeecCCccccCCCCCCccceeeeccccCCCCcccchHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHhhhhhhh
Q 044983 34 IYRVAEPKRCLNPRHFTPQMVSIGPFHHGKEELKPMEEHKQRYLKYFLQRTK---VSMASFLGFIKAKETKLRNCYAATI 110 (428)
Q Consensus 34 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~~R~~Y~e~i 110 (428)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|.+ .++++++++|++++++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhcccccCCCc-ccCcccchhhHhHHHHhhccCchHHHHHHHHHhhcccccccc
Q 044983 111 RNLGSDEFVAMVLVDAVFLIEFFLRFYKRNFRTVDDR-IFGKPQLRNEIWHDFLLLENQLPLFILYDLFDLAKTATYEDA 189 (428)
Q Consensus 111 ~~~~~~ef~~MmllDgcFiLe~~~~~~~~~~~~~~D~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~ 189 (428)
.++++++|++||++|||||||+|+++... .+.+|| ++..+|+...|++||+|||||||||||++||++.....
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~~--~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~---- 154 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSRS--DGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSK---- 154 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhc--cccccccccccccccccchhheeeecccchHHHHHHHHHHhcccc----
Confidence 44999999999999999999999988751 125788 88899999999999999999999999999999998332
Q ss_pred ccccchHHHHHHHhhcccccCCCCCCCccccccCCCCCChHHHHHHHhCCCC--C-ccc--c-c-----CCCcccCCHHH
Q 044983 190 FYENISFVKITCFWFRNHVLGFLPLDENSLEIHFSKAEHFLDLIILCLQPSQ--S-RAQ--I-T-----LKDQNIPSVEE 258 (428)
Q Consensus 190 ~~~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~--~-~~~--~-~-----~~~~~~~sAte 258 (428)
.....++.+++.+||....... .+. ......+++|||||+|.+++|++ . ..+ + . .++..||||||
T Consensus 155 ~~~~~~l~~l~~~~~~~~~~~~-~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~e 230 (391)
T PF03140_consen 155 SDVDESLIDLVLKFFYKHWPSW-PPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATE 230 (391)
T ss_pred cCccchHHHHHHhHhccccccc-ccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHH
Confidence 2445789999999994332211 111 12244578999999999999932 1 111 1 1 12467999999
Q ss_pred HHhcCcEEeecCCCCC-CccceEEcCceeeeceeeeecchhHHHHhHHHHHHh-ccCCcchhhHHHHHhhhcCChhhHHH
Q 044983 259 LHEAGVKFKPAAGSTK-NLLDINFNQGILEIPFFKVYENTQRAYRNLLAFESM-HGYKKYFNDYIIMTACLISCPKDAEL 336 (428)
Q Consensus 259 L~~aGVkfk~~~~~~~-~llDI~F~~g~L~IP~l~id~~T~~llrNLiA~Eq~-~~~~~~vtsYv~fm~~Li~t~eDV~l 336 (428)
|++|||+||+ +++. +++||+|++|+|+||+|.||++|+++|||||||||| ...+.+||||+.||++||+|++||++
T Consensus 231 L~~aGV~fk~--~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~l 308 (391)
T PF03140_consen 231 LREAGVKFKP--SETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVEL 308 (391)
T ss_pred HHhCCcEEee--ccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHH
Confidence 9999999999 5554 699999999999999999999999999999999999 77899999999999999999999999
Q ss_pred HHHcCeee--cCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCchhhhHhhhcccccccchHHHHHHHHHHHH
Q 044983 337 LVQNEVIR--LGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPWHKWKATLKQNYFNTPWASISVIAAVILL 414 (428)
Q Consensus 337 L~~~gIi~--lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll 414 (428)
|+++|||+ +|||+||++|||+||++++.+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|
T Consensus 309 L~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll 388 (391)
T PF03140_consen 309 LRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILL 388 (391)
T ss_pred HHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999887778999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 044983 415 LLT 417 (428)
Q Consensus 415 ~lt 417 (428)
++|
T Consensus 389 ~lT 391 (391)
T PF03140_consen 389 LLT 391 (391)
T ss_pred HhC
Confidence 997
No 2
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=65.19 E-value=5.9 Score=33.04 Aligned_cols=19 Identities=42% Similarity=0.711 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 044983 400 TPWASISVIAAVILLLLTAT 419 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~ 419 (428)
|||..|++-|| ++|+++++
T Consensus 82 ~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 82 NPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred CCchHHHHHHH-HHHHHHHH
Confidence 89999997654 55555554
No 3
>PRK10132 hypothetical protein; Provisional
Probab=59.31 E-value=9.3 Score=32.26 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=14.4
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 044983 400 TPWASISVIAAVILLLLTAT 419 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~ 419 (428)
|||..+++.| .++++++++
T Consensus 85 ~Pw~svgiaa-gvG~llG~L 103 (108)
T PRK10132 85 RPWCSVGTAA-AVGIFIGAL 103 (108)
T ss_pred CcHHHHHHHH-HHHHHHHHH
Confidence 8999999654 577777665
No 4
>PRK10404 hypothetical protein; Provisional
Probab=57.73 E-value=10 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=17.9
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHH
Q 044983 391 ATLKQNYFNTPWASISVIAAVILLLLTAT 419 (428)
Q Consensus 391 a~l~~~yf~npW~~is~~aA~~ll~lt~~ 419 (428)
...+|+ |||..+++.| .++|+++++
T Consensus 73 d~yV~e---~Pw~avGiaa-gvGlllG~L 97 (101)
T PRK10404 73 DDYVHE---KPWQGIGVGA-AVGLVLGLL 97 (101)
T ss_pred HHHHHh---CcHHHHHHHH-HHHHHHHHH
Confidence 444566 9999999644 577777765
No 5
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=56.99 E-value=12 Score=28.37 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 044983 402 WASISVIAAVILLLLTATQIV 422 (428)
Q Consensus 402 W~~is~~aA~~ll~lt~~Qt~ 422 (428)
|.++|.+.|+++|++-.+|+-
T Consensus 2 WIiiSIvLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSE 22 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHH
Confidence 899999999999999988875
No 6
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=55.68 E-value=15 Score=26.53 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=26.9
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044983 394 KQNYFNTPWASISVIAAVILLLLTATQIVSSLI 426 (428)
Q Consensus 394 ~~~yf~npW~~is~~aA~~ll~lt~~Qt~~sv~ 426 (428)
.+.+++|+.+.++++.-+++++++++.-+++-+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 477888999999999988888888888776533
No 7
>PF14770 TMEM18: Transmembrane protein 18
Probab=54.21 E-value=14 Score=32.02 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=36.7
Q ss_pred HHHHHHhhcCchhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 044983 375 VTNLQAYRKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTATQIVSSL 425 (428)
Q Consensus 375 ~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt~~Qt~~sv 425 (428)
.+.+|++..+-|+ ..-+++||.+-=.+||++-++=+|+.+++..+..+
T Consensus 55 aE~iN~~~a~nW~---~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 55 AEYINEYAARNWR---SFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHHHHH---HHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 3788998887764 33458999999999999988777777776666544
No 8
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=46.84 E-value=77 Score=25.38 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=54.3
Q ss_pred CcEEeecCCCCCCccceEEcC--ceeeeceeeeecchhHHHHhHHHHHHhccCCcchhhHHHHHhhh-cCChhhHHHHHH
Q 044983 263 GVKFKPAAGSTKNLLDINFNQ--GILEIPFFKVYENTQRAYRNLLAFESMHGYKKYFNDYIIMTACL-ISCPKDAELLVQ 339 (428)
Q Consensus 263 GVkfk~~~~~~~~llDI~F~~--g~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~vtsYv~fm~~L-i~t~eDV~lL~~ 339 (428)
||++.+. .=..+-.+-+..+ +.+.+|--.|..-.+.....+++-=+ +..++|+..|...+ --+..+++.|.+
T Consensus 1 Gi~v~pp-dIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~----~g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPP-DINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE----NGPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE----TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH----CSS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCC-eecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh----cCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 7888774 2223334555565 79999999999999987766665333 45688899999988 778999999999
Q ss_pred cCeee-cCC
Q 044983 340 NEVIR-LGN 347 (428)
Q Consensus 340 ~gIi~-lgs 347 (428)
.|.++ ++.
T Consensus 76 aGafd~~~~ 84 (90)
T PF14579_consen 76 AGAFDSFGK 84 (90)
T ss_dssp TTTTTTCSS
T ss_pred CCCccccCh
Confidence 99999 765
No 9
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.89 E-value=56 Score=26.65 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhh-----hhHHHHHHHH-------------HHHHHHHHhhhhhh--hcCCChhHHHHHHHHH
Q 044983 71 EHKQRYLKYFLQRTK-----VSMASFLGFI-------------KAKETKLRNCYAAT--IRNLGSDEFVAMVLVD 125 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~-----~~l~~~~~~i-------------~~~e~~~R~~Y~e~--i~~~~~~ef~~MmllD 125 (428)
+.|.||+=+.+...+ ..++.++..+ ...|..+|+|+... -.+++.++|...|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 358899888887643 2344443322 23678899999862 2378889988887654
No 10
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=37.78 E-value=55 Score=24.74 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=26.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044983 396 NYFNTPWASISVIAAVILLLLTATQIVSSLI 426 (428)
Q Consensus 396 ~yf~npW~~is~~aA~~ll~lt~~Qt~~sv~ 426 (428)
.-++||-++++++++++..+..+.+|+-++.
T Consensus 29 ~llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 29 PLLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999987765
No 11
>PHA02103 hypothetical protein
Probab=37.02 E-value=72 Score=26.79 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=51.3
Q ss_pred cEEeecC-CCCCCcc--ceEEcC----ce--eeeceeeeecchhHHHHhHHHHHHh-cc--CC-------cchhhHHHHH
Q 044983 264 VKFKPAA-GSTKNLL--DINFNQ----GI--LEIPFFKVYENTQRAYRNLLAFESM-HG--YK-------KYFNDYIIMT 324 (428)
Q Consensus 264 Vkfk~~~-~~~~~ll--DI~F~~----g~--L~IP~l~id~~T~~llrNLiA~Eq~-~~--~~-------~~vtsYv~fm 324 (428)
.||++.+ +..++.+ .|.|++ .+ -+||.+..|....-+-|=.+-+|.| .. .+ .++-+|-..
T Consensus 6 lkf~~fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry- 84 (135)
T PHA02103 6 LKFTPFKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY- 84 (135)
T ss_pred eeeeccCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH-
Confidence 4555421 3334444 344543 44 5899999999999999999999999 43 11 334455443
Q ss_pred hhhcCChhhHHHHHHcCeee
Q 044983 325 ACLISCPKDAELLVQNEVIR 344 (428)
Q Consensus 325 ~~Li~t~eDV~lL~~~gIi~ 344 (428)
.-..+|-|++-.+-||=.
T Consensus 85 --f~ee~e~ie~we~ygve~ 102 (135)
T PHA02103 85 --FGEEAEGVELWEEYGVEG 102 (135)
T ss_pred --hcccchhhhHHHHhCcce
Confidence 345677888888888754
No 12
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=36.90 E-value=51 Score=26.68 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccC
Q 044983 400 TPWASISVIAAVILLLLTATQIVSSLIAL 428 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~sv~~y 428 (428)
++|+++|.++-+++.++++-=.+||.+.|
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57888888888777777776667776643
No 13
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=36.68 E-value=29 Score=30.39 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=35.5
Q ss_pred Cccceeeec--cccCCCC---cccchHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHhhhh
Q 044983 49 FTPQMVSIG--PFHHGKE---ELKPMEEHKQRYLKYFLQR----------TKVSMASFLGFIKAKETKLRNCYA 107 (428)
Q Consensus 49 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r----------~~~~l~~~~~~i~~~e~~~R~~Y~ 107 (428)
--|+++||| ||..++. ++..++..|--+-...++- +=.++++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 7776543 2233333333333332221 113689999999988888877543
No 14
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=36.43 E-value=36 Score=28.30 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 044983 404 SISVIAAVILLLLTATQIVSSLIA 427 (428)
Q Consensus 404 ~is~~aA~~ll~lt~~Qt~~sv~~ 427 (428)
.++.+.|+++.++++++|+||-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 467778899999999999998654
No 15
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=36.27 E-value=35 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=13.8
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 044983 399 NTPWASISVIAAVILLLLTAT 419 (428)
Q Consensus 399 ~npW~~is~~aA~~ll~lt~~ 419 (428)
.|||+.+++.++ ++++++++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 389999887666 55555543
No 16
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.30 E-value=1e+02 Score=22.71 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=28.1
Q ss_pred HHHHHHhhcCchhhhHhhhcccccccchHHHHHHHHHHHHH
Q 044983 375 VTNLQAYRKLPWHKWKATLKQNYFNTPWASISVIAAVILLL 415 (428)
Q Consensus 375 ~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~ 415 (428)
.+++++|-++.|+.- -|+-| -||..+.++.|+++.+
T Consensus 9 Q~~Vd~yL~a~~~~V----ER~PF-rP~~Ll~~li~Vv~gl 44 (55)
T PF11293_consen 9 QQRVDEYLQAGVNQV----ERKPF-RPWRLLIVLIVVVIGL 44 (55)
T ss_pred HHHHHHHHhCCCCcc----ccCCc-chHHHHHHHHHHHHHH
Confidence 378999999998843 47778 5999998888776654
No 17
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=32.71 E-value=57 Score=26.61 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.8
Q ss_pred cch---HHHHHHHHHHHHHHHHHHHhhhh
Q 044983 400 TPW---ASISVIAAVILLLLTATQIVSSL 425 (428)
Q Consensus 400 npW---~~is~~aA~~ll~lt~~Qt~~sv 425 (428)
+|| .+.-++-+++-+|..++||+++.
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566 35666677777778888888874
No 18
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.56 E-value=68 Score=24.76 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=25.4
Q ss_pred hhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 044983 388 KWKATLKQNYFNTPWASISVIAAVILLLLTATQ 420 (428)
Q Consensus 388 ~w~a~l~~~yf~npW~~is~~aA~~ll~lt~~Q 420 (428)
-|...+.-.+-+.-|.+|++++++++-++|.+-
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 355555566777889999999998888888653
No 19
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=28.80 E-value=1.1e+02 Score=30.86 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=51.8
Q ss_pred HHHHHHcCeee-cCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcC--chhhhHhhhcccccccc-hHHHHHHH
Q 044983 334 AELLVQNEVIR-LGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKL--PWHKWKATLKQNYFNTP-WASISVIA 409 (428)
Q Consensus 334 V~lL~~~gIi~-lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~--r~~~w~a~l~~~yf~np-W~~is~~a 409 (428)
|++|.++|||. +.=|+-+..+.+. .+-.. ... +.++.++..+||.- |..+|++.++-.-= .| ..+|.-.|
T Consensus 82 ~~~L~~~GIvPgIKVDkGl~~l~g~--~~e~~--t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~-~PS~~~I~~na 155 (330)
T cd00948 82 VDILKEKGIVPGIKVDKGLVPLAGT--DGETT--TQG-LDGLAERCAKYYKQGARFAKWRAVLKIGNG-TPSELAIKENA 155 (330)
T ss_pred HHHHHHCCCeeeEEeCCCccccCCC--CCCcc--CcC-hHHHHHHHHHHhhcCCcceeeheeeeccCC-CCcHHHHHHHH
Confidence 89999999999 7766666666544 22211 233 89999999999874 46789987755422 23 24444455
Q ss_pred HHHHHHHHHHH
Q 044983 410 AVILLLLTATQ 420 (428)
Q Consensus 410 A~~ll~lt~~Q 420 (428)
..+.=...+.|
T Consensus 156 ~~LaryA~icq 166 (330)
T cd00948 156 HGLARYAAICQ 166 (330)
T ss_pred HHHHHHHHHHH
Confidence 45544444444
No 20
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.07 E-value=85 Score=23.19 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 044983 400 TPWASISVIAAVILLLLTATQ 420 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Q 420 (428)
+||.+|.++.|+++--+.++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 799999999998887776664
No 21
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=24.80 E-value=98 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044983 400 TPWASISVIAAVILLLLTATQIVSSLI 426 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~sv~ 426 (428)
++|+++|.++-++..++++-=.+||.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877777766677765
No 22
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=23.02 E-value=92 Score=25.27 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=29.7
Q ss_pred cCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCch
Q 044983 340 NEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPW 386 (428)
Q Consensus 340 ~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~ 386 (428)
.|+..+-+.++||+++-.- |+- . . .-|.++...|..||++.-
T Consensus 28 ~g~Fkl~~~~~vA~lWG~~-Knk-~--~-M~YeklSRaLRyyy~~~i 69 (87)
T smart00413 28 GGEFKLVDPEEVARLWGQR-KNK-P--N-MNYEKLSRALRYYYKKNI 69 (87)
T ss_pred CCEEEecCHHHHHHHHhhh-cCC-C--C-CCHHHHHHHHHHHHhcCc
Confidence 4555545678999998755 321 2 2 239999999999998764
No 23
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.78 E-value=77 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.350 Sum_probs=14.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 044983 398 FNTPWASISVIAAVILLLLTATQ 420 (428)
Q Consensus 398 f~npW~~is~~aA~~ll~lt~~Q 420 (428)
|.||-..+|+++|+++++.++..
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666655544
No 24
>PHA02898 virion envelope protein; Provisional
Probab=21.25 E-value=1.3e+02 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044983 400 TPWASISVIAAVILLLLTATQIVSSLI 426 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~sv~ 426 (428)
++|+++|.++-+++.++++-=.+||.+
T Consensus 42 ~~wRalSii~FIlgivl~lG~~ifs~y 68 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFFKGY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877776666666655566654
No 25
>PHA03048 IMV membrane protein; Provisional
Probab=20.82 E-value=1.4e+02 Score=24.24 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044983 400 TPWASISVIAAVILLLLTATQIVSSLIA 427 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~sv~~ 427 (428)
++|+++|.++-+++.++|+-=.+||++.
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6798888888888888887777787764
No 26
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.71 E-value=99 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh
Q 044983 400 TPWASISVIAAVILLLLTATQIVSS 424 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~s 424 (428)
+-|+.||+++|+-+++++.+.++..
T Consensus 14 ~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 14 ELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 4688999999999999999888753
Done!