Query 044983
Match_columns 428
No_of_seqs 124 out of 674
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 24.3 22 0.00076 23.0 0.7 21 289-310 1-21 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 21.3 18 0.00062 23.7 -0.2 21 289-310 3-23 (40)
3 1v54_G Cytochrome C oxidase po 15.0 1.1E+02 0.0036 23.7 2.8 24 400-423 14-37 (85)
4 2kru_A Light-independent proto 14.8 47 0.0016 24.2 0.7 15 167-181 15-29 (63)
5 1awc_A Protein (GA binding pro 14.3 80 0.0027 25.6 2.0 66 340-410 26-93 (110)
6 2lf8_A Transcription factor ET 17.8 40 0.0014 28.1 0.0 66 340-410 31-98 (128)
7 1yo5_C SAM pointed domain cont 13.4 1.2E+02 0.0041 24.0 2.8 42 339-385 37-78 (97)
8 3jtg_A ETS-related transcripti 13.3 1.4E+02 0.0046 23.9 3.1 42 339-385 31-72 (103)
9 2qap_A Fructose-1,6-bisphospha 12.7 56 0.0019 32.3 0.8 95 321-420 106-208 (391)
10 2y69_G Cytochrome C oxidase po 12.3 1.4E+02 0.0047 23.6 2.8 24 400-423 26-49 (97)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=24.27 E-value=22 Score=23.03 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.7
Q ss_pred ceeeeecchhHHHHhHHHHHHh
Q 044983 289 PFFKVYENTQRAYRNLLAFESM 310 (428)
Q Consensus 289 P~l~id~~T~~llrNLiA~Eq~ 310 (428)
||+.+| -|--+||||+-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 777777 689999999876544
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=21.32 E-value=18 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.5
Q ss_pred ceeeeecchhHHHHhHHHHHHh
Q 044983 289 PFFKVYENTQRAYRNLLAFESM 310 (428)
Q Consensus 289 P~l~id~~T~~llrNLiA~Eq~ 310 (428)
||+.|| -|--+||||+-....
T Consensus 3 PpiSiD-LTFHlLR~miemar~ 23 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELART 23 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHHH
Confidence 777776 689999999876543
No 3
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=14.98 E-value=1.1e+02 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 044983 400 TPWASISVIAAVILLLLTATQIVS 423 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~ 423 (428)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999898888888764
No 4
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=14.83 E-value=47 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=11.0
Q ss_pred cCchHHHHHHHHHhh
Q 044983 167 NQLPLFILYDLFDLA 181 (428)
Q Consensus 167 NQiPffVL~~L~~~~ 181 (428)
++|||||=.++=.-.
T Consensus 15 kkIP~FVR~kvrr~t 29 (63)
T 2kru_A 15 GKVPFFVRKKVRKNT 29 (63)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 569999987775443
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=14.29 E-value=80 Score=25.60 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=45.5
Q ss_pred cCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCch-hhhH-hhhcccccccchHHHHHHHH
Q 044983 340 NEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPW-HKWK-ATLKQNYFNTPWASISVIAA 410 (428)
Q Consensus 340 ~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~-~~w~-a~l~~~yf~npW~~is~~aA 410 (428)
.|++.+-+.++||+++-.- |+ .. .=+ |.++...+.-||++.- .+-. ..+..+|..+|+..++.-++
T Consensus 26 ~geFkl~d~e~VArlWG~r-Kn-kp--~Mn-YeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~ 93 (110)
T 1awc_A 26 EGEFKLNQPELVAQKWGQR-KN-KP--TMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAA 93 (110)
T ss_dssp SSEEECSSHHHHHHHHHHH-HT-CT--TCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHH
T ss_pred CCEEEecCHHHHHHHHHHc-cC-CC--CCC-HHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHH
Confidence 4666656779999999754 22 12 224 9999999999999763 2222 34677888899987766554
No 6
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=17.80 E-value=40 Score=28.10 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=43.0
Q ss_pred cCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCchh-hhH-hhhcccccccchHHHHHHHH
Q 044983 340 NEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPWH-KWK-ATLKQNYFNTPWASISVIAA 410 (428)
Q Consensus 340 ~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~-~w~-a~l~~~yf~npW~~is~~aA 410 (428)
+|++.+-+.++||+++-.- |+ .. .=+ |.++...+.-||++.-. +-. ..+..+|..+|..+++--+.
T Consensus 31 ~geFklvdpe~VArlWG~r-Kn-kp--~Mn-YeKLSRALRyYY~k~Ii~Kv~GqrlvY~F~~~p~~l~~~~~~ 98 (128)
T 2lf8_A 31 SKIFRIVDPNGLARLWGNH-KN-RT--NMT-YEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDEIMSGRTD 98 (128)
Confidence 4566644567899988643 22 11 223 89999999999987642 222 44677888889887765443
No 7
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=13.37 E-value=1.2e+02 Score=23.96 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=30.5
Q ss_pred HcCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCc
Q 044983 339 QNEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLP 385 (428)
Q Consensus 339 ~~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 385 (428)
++|++.+-+.++||+++-.-- + .. .=+ |.++...+.-||++.
T Consensus 37 ~~g~Fkl~d~~~VArlWG~rK-n-kp--~Mn-YeklSRaLRyYY~~~ 78 (97)
T 1yo5_C 37 EKGIFKIEDSAQVARLWGIRK-N-RP--AMN-YDKLSRSIRQYYKKG 78 (97)
T ss_dssp TTTEEEESCHHHHHHHHHHHH-T-CT--TCC-HHHHHHHHHHTTTTT
T ss_pred CCCEEEecCHHHHHHHHHhcC-C-CC--CcC-HHHHHHHHHHHHhcC
Confidence 467777556799999987542 2 12 224 999999999999875
No 8
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=13.26 E-value=1.4e+02 Score=23.90 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.2
Q ss_pred HcCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCc
Q 044983 339 QNEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLP 385 (428)
Q Consensus 339 ~~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 385 (428)
++|++.+-+.++||+++-.-- +- . .-+ |.++...|.-||++.
T Consensus 31 ~~g~Fkl~dp~~VArlWG~rK-nk-p--~Mn-YeKlSRaLRyYy~~~ 72 (103)
T 3jtg_A 31 HEGVFKFLRSEAVAQLWGQKK-KN-S--NMT-YEKLSRAMRYYYKRE 72 (103)
T ss_dssp TTTEEEESSHHHHHHHHHHHT-TC-T--TCC-HHHHHHHHHHHHHTT
T ss_pred CCceEEecCHHHHHHHHHhcc-CC-C--CcC-HHHHHHHHHHHHhcC
Confidence 356666556789999997653 32 1 224 999999999999865
No 9
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=12.72 E-value=56 Score=32.28 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=55.6
Q ss_pred HHHHhhhcCChhh----HHHHHHcCeee-cCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcC--chhhhHhhh
Q 044983 321 IIMTACLISCPKD----AELLVQNEVIR-LGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKL--PWHKWKATL 393 (428)
Q Consensus 321 v~fm~~Li~t~eD----V~lL~~~gIi~-lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~--r~~~w~a~l 393 (428)
+.|=.-|-.+..| |++|+++|||. +.=|+-+..+.++--.+.. ... ++++.+...+|+.- |+.+|++.+
T Consensus 106 ILFeETl~Qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~~G~~~e~~---tqG-LDgL~eR~a~y~~~Ga~FAKWRsVi 181 (391)
T 2qap_A 106 ILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQM---TEG-LDGYVKRASAYYKKGCRFCKWRNVY 181 (391)
T ss_dssp EECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEE---ECC-CTTHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EcchHhccCcCcCCcCHHHHHHHCCCeeEEEecCCcccccCCCCCCcc---CCC-hhHHHHHHHHHHhcCCcceeeeeEE
Confidence 3344444444556 99999999999 6666666555433222211 223 77888888999875 467898877
Q ss_pred ccc-ccccchHHHHHHHHHHHHHHHHHH
Q 044983 394 KQN-YFNTPWASISVIAAVILLLLTATQ 420 (428)
Q Consensus 394 ~~~-yf~npW~~is~~aA~~ll~lt~~Q 420 (428)
+-. ...|+- +|.-.|..+.=...+.|
T Consensus 182 ki~~~~PS~~-aI~~na~~LArYA~icQ 208 (391)
T 2qap_A 182 KIQNGTVSES-AVRFNAETLARYAILSQ 208 (391)
T ss_dssp CCBTTBCCHH-HHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 543 444443 34444444444444444
No 10
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.30 E-value=1.4e+02 Score=23.65 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 044983 400 TPWASISVIAAVILLLLTATQIVS 423 (428)
Q Consensus 400 npW~~is~~aA~~ll~lt~~Qt~~ 423 (428)
+-|+-||+++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999888888888764
Done!