Query 044983
Match_columns 428
No_of_seqs 124 out of 674
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 15:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 26.9 66 0.0048 23.6 6.0 53 71-123 3-77 (97)
2 d1duxc_ a.4.5.21 (C:) Elk-1 {H 25.3 30 0.0022 25.0 3.6 42 339-385 26-67 (86)
3 d1awca_ a.4.5.21 (A:) GA bindi 21.0 22 0.0016 26.9 2.2 68 340-412 26-95 (110)
4 d1v54g_ f.23.2.1 (G:) Mitochon 19.8 33 0.0024 24.7 2.8 23 401-423 15-37 (84)
5 d1yo5c1 a.4.5.21 (C:247-334) S 18.5 35 0.0026 24.7 2.8 43 339-386 29-71 (88)
6 d2i4ra1 c.149.1.1 (A:4-79) V-t 14.1 27 0.002 24.4 1.1 24 34-57 53-76 (76)
7 d1wwxa1 a.4.5.21 (A:8-101) E74 13.5 46 0.0034 24.3 2.3 42 339-385 28-69 (94)
8 d1v8ca2 d.129.5.1 (A:88-165) M 13.2 36 0.0027 23.1 1.4 12 284-295 49-60 (78)
9 d1xlya_ a.232.1.1 (A:) RNA-bin 10.4 17 0.0012 30.6 -1.3 38 305-342 10-48 (232)
10 d1flia_ a.4.5.21 (A:) Fli-1 {H 9.1 88 0.0064 22.9 2.5 42 340-386 31-72 (98)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.94 E-value=66 Score=23.56 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhh-----hhHHHHHHHHH---------------HHHHHHHhhhhhhh--cCCChhHHHHHHH
Q 044983 71 EHKQRYLKYFLQRTK-----VSMASFLGFIK---------------AKETKLRNCYAATI--RNLGSDEFVAMVL 123 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~-----~~l~~~~~~i~---------------~~e~~~R~~Y~e~i--~~~~~~ef~~Mml 123 (428)
+.|.||+=+.+...+ ..++.++..+. .+|..+|+|+.... .+.+.++|+..|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 358899988887543 23444443321 24778888886433 2467777766553
No 2
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.26 E-value=30 Score=24.97 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=31.1
Q ss_pred HcCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCc
Q 044983 339 QNEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLP 385 (428)
Q Consensus 339 ~~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 385 (428)
+.|+..+-+.++||+++-.- |+- . . .-|.++...|..||++.
T Consensus 26 ~~g~Fklv~~~~VA~lWG~~-Knk-~--~-MnYeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 26 DGGEFKLVDAEEVARLWGLR-KNK-T--N-MNYDKLSRALRYYYDKN 67 (86)
T ss_dssp TTTEEECTTHHHHHHHHHHT-TTC-S--C-CCHHHHHHHHHHHHTTT
T ss_pred CCCEEEecCHHHHHHHHHhc-cCC-C--C-CCHHHHHHHHHHHHhcc
Confidence 46777766789999999543 432 2 2 23999999999999875
No 3
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.96 E-value=22 Score=26.93 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=47.4
Q ss_pred cCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCchh-hhH-hhhcccccccchHHHHHHHHHH
Q 044983 340 NEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPWH-KWK-ATLKQNYFNTPWASISVIAAVI 412 (428)
Q Consensus 340 ~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~-~w~-a~l~~~yf~npW~~is~~aA~~ 412 (428)
.|+..+-+.++||+++-.- |+- . .-+ |.++...|.-||++.-. +-. ..+...|..+||..++.-++-+
T Consensus 26 ~geFkl~d~e~VA~lWG~~-Knk-~--~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 26 EGEFKLNQPELVAQKWGQR-KNK-P--TMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp SSEEECSSHHHHHHHHHHH-HTC-T--TCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred CCEEEeCCHHHHHHHHHHh-hCC-C--ccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 4655566789999999643 332 1 224 99999999999998642 222 4567889999999876555533
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.78 E-value=33 Score=24.68 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 044983 401 PWASISVIAAVILLLLTATQIVS 423 (428)
Q Consensus 401 pW~~is~~aA~~ll~lt~~Qt~~ 423 (428)
-|+.||+++|+-+++++.+.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999998888763
No 5
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.55 E-value=35 Score=24.69 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.7
Q ss_pred HcCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCch
Q 044983 339 QNEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPW 386 (428)
Q Consensus 339 ~~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~ 386 (428)
++|+..+-+.++||+++-.-- +- . .=+ |.++...|..||++.-
T Consensus 29 ~~g~Fkl~~~~~VA~lWG~~K-nk-~--~M~-YeklSRALRyYY~~~i 71 (88)
T d1yo5c1 29 EKGIFKIEDSAQVARLWGIRK-NR-P--AMN-YDKLSRSIRQYYKKGI 71 (88)
T ss_dssp TTTEEEESCHHHHHHHHHHHH-TC-T--TCC-HHHHHHHHHHTTTTTS
T ss_pred CCceEEecCHHHHHHHHHHhh-cC-C--CCC-HHHHHHHHHHHHhccc
Confidence 456777667788999996443 21 1 124 9999999999998763
No 6
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.07 E-value=27 Score=24.40 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.0
Q ss_pred eeecCCccccCCCCCCccceeeec
Q 044983 34 IYRVAEPKRCLNPRHFTPQMVSIG 57 (428)
Q Consensus 34 I~rVP~~lr~~n~~aY~P~~VSIG 57 (428)
.-++|+.+++.-.+.-.|.++.||
T Consensus 53 a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 53 LKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp STTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHHhhHHHHHHHhcCCCCEEEecC
Confidence 346788888877888999999998
No 7
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.53 E-value=46 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=30.8
Q ss_pred HcCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCc
Q 044983 339 QNEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLP 385 (428)
Q Consensus 339 ~~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 385 (428)
++|+..+-+.++||+++-.--..- .=+ |.++...|.-||++.
T Consensus 28 ~~g~Fkl~d~~~VA~lWG~~K~~~----~M~-YeklSRaLRyYY~~~ 69 (94)
T d1wwxa1 28 EQGIFRVVKSEALAKMWGQRKKND----RMT-YEKLSRALRYYYKTG 69 (94)
T ss_dssp TTTEEECSCHHHHHHHHHHHHTCT----TCC-HHHHHHHHHHHHHHT
T ss_pred CCcEEEEcCHHHHHHHHHhhcCCC----CCc-HHHHHHHHHHHHhcc
Confidence 566777667789999987653221 224 999999999999864
No 8
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.15 E-value=36 Score=23.09 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=10.4
Q ss_pred ceeeeceeeeec
Q 044983 284 GILEIPFFKVYE 295 (428)
Q Consensus 284 g~L~IP~l~id~ 295 (428)
|.|.||+|.|.-
T Consensus 49 gsl~ip~lrvev 60 (78)
T d1v8ca2 49 GSLSIPQLRVEV 60 (78)
T ss_dssp TTEEEEEEEEEE
T ss_pred cceecceEEEEe
Confidence 899999999864
No 9
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.40 E-value=17 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHh-ccCCcchhhHHHHHhhhcCChhhHHHHHHcCe
Q 044983 305 LAFESM-HGYKKYFNDYIIMTACLISCPKDAELLVQNEV 342 (428)
Q Consensus 305 iA~Eq~-~~~~~~vtsYv~fm~~Li~t~eDV~lL~~~gI 342 (428)
=|+||. +-...|+++|+.+++.+|+--+-|.-|+-..+
T Consensus 10 d~~~qi~~~~s~YiS~yv~~LNk~I~~lRrvstLrfER~ 48 (232)
T d1xlya_ 10 ELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERT 48 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888 77789999999999999998888888875544
No 10
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=88 Score=22.89 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=29.8
Q ss_pred cCeeecCCCCcHHHHHHhhCCCCccCCCCCcHHHHHHHHHHhhcCch
Q 044983 340 NEVIRLGNTETVPTVFRNLDPDCTLNSYNFQYSGVVTNLQAYRKLPW 386 (428)
Q Consensus 340 ~gIi~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~ 386 (428)
+|+..+-+.++||+++-.- |+- . ..-|.++...|..||++.-
T Consensus 31 ~geFkl~~~~~VA~lWG~~-Knk-~---~M~YeklSRaLRyYY~~~i 72 (98)
T d1flia_ 31 NGEFKMTDPDEVARRWGER-KSK-P---NMNYDKLSRALRYYYDKNI 72 (98)
T ss_dssp SSSCEECCHHHHHHHHHHH-TCC-T---TCSSHHHHHHHHHHHHTTS
T ss_pred CCEEEeCCHHHHHHHHHHh-hcC-C---CccHHHHHHHHHHHHhccc
Confidence 4665566779999999644 322 2 1239999999999998753
Done!