BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044984
(739 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNR 436
+ C ++ L G H D P N+V +D +L DFG+ +F ++ YV
Sbjct: 133 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNF------MMTPYVVT 186
Query: 437 DSLGLANDFLSLGFIPEGFDIQAVSDALQASFGDGTRQSQDFQG---------VMDQLYD 487
L +G+ E DI +V G+ + S FQG V++QL
Sbjct: 187 RYYRAPEVILGMGY-KENVDIWSVG----CIMGELVKGSVIFQGTDHIDQWNKVIEQLGT 241
Query: 488 VMYEFNFSLPP 498
EF +L P
Sbjct: 242 PSAEFMAALQP 252
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGL 172
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGL 172
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 137 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 174
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 136 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 173
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 134 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 171
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 136 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 173
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 136 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 173
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 129 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 166
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 210
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 140 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 177
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 129 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 166
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 129 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 166
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 128 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 165
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ C ++ L G H D P N+V +D +L DFG+
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 210
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVALADG 405
L ME + G L+D + ++R K++ L SL L + GF+H D P N++ A
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILG-SLLRSLAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 406 SLAYFDFGMMGDIPR--HFRVGLIQVLVHYVNR 436
DFG + P+ + L+Q +VN
Sbjct: 377 HARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE 409
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVALADG 405
L ME + G L+D + ++R K++ L SL L + GF+H D P N++ A
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILG-SLLRSLAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 406 SLAYFDFGMMGDIPR--HFRVGLIQVLVHYVNR 436
DFG + P+ + L+Q +VN
Sbjct: 377 HARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE 409
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
+ ++ L G H D P N+V +D +L DFG+
Sbjct: 135 MLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVALADG 405
L ME + G L+D + ++R K++ L SL L + GF+H D P N++ A
Sbjct: 319 LVMEKLPGRLLSDMLAAGE-EIDREKILG-SLLRSLAALEKKGFWHDDVRPWNVMVDARQ 376
Query: 406 SLAYFDFGMMGDIPR--HFRVGLIQVLVHYVNR 436
DFG + P+ + L+Q +VN
Sbjct: 377 HARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE 409
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 405 GSLAYFDFGM 414
++ DFG+
Sbjct: 153 NAVKVMDFGI 162
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 167 DVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVF 208
DV+ V QE + ++ +PPY T A+ I +L + V EV
Sbjct: 796 DVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVM 837
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 405 GSLAYFDFGMMGDIPRHFR--------VGLIQVLVHYVNR-DSLGLANDFLSLGFI 451
++ DFG+ I +G Q L R DS+ +D SLG +
Sbjct: 153 NAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 32/173 (18%)
Query: 516 VLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLIRNNGSIRW---------NRLERL 566
+ DP K+ +SS L DP + K +RQ + IR+ N L L
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRFASKTQPGVTNMLTIL 255
Query: 567 IAAISEQASEEITNSEEN-FSQRLGWKSF-DMR-AVVAATEDLLLFILSEKGQMVRVFLL 623
A + E ++ +TN N KS+ D++ A+ AT +LL+ I ++ Q+ R
Sbjct: 256 KALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQISR---- 311
Query: 624 RDIIRAADTFVHDEVFGCILEKKNEARLTPETERQAMLTRVVNGFRSLHQSVK 676
++VF C+ KN+A+ T T L +GF Q++K
Sbjct: 312 ------------EQVFNCLQAGKNQAQATART----TLALFYDGFGLGSQNIK 348
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 405 GSLAYFDFGM 414
++ DFG+
Sbjct: 153 NAVKVMDFGI 162
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 152
Query: 405 GSLAYFDFGMMGDIPRHFR--------VGLIQVLVHYVNR-DSLGLANDFLSLGFI 451
++ DFG+ I +G Q L R DS+ +D SLG +
Sbjct: 153 NAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 110 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISAT 169
Query: 405 GSLAYFDFGM 414
++ DFG+
Sbjct: 170 NAVKVMDFGI 179
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 381 LRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
++ L G H D P N+V +D +L DFG+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGL 172
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 381 LRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
++ L G H D P N+V +D +L DFG+
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGL 172
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 381 LRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
++ L G H D P N+V +D +L DFG+
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGL 165
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 315 KKASVANNV---KTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRR- 370
+ +S+ N + K KH I + ++ T L M+ + G +L D I L+R +
Sbjct: 49 RDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRI-LERGVYTEKD 107
Query: 371 -KLIDEGLYCSLRQLLEVGFFHADPHPGNLVALA---DGSLAYFDFGM 414
L+ + + +++ L E G H D P NL+ L + + DFG+
Sbjct: 108 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGL 155
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 346 LTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYC-SLRQLLEVGFFHADPHPGNLVALAD 404
+ ME++DG+ L D + + +R + C +L + G H D P N++ A
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISAT 152
Query: 405 GSLAYFDFGM 414
++ DFG+
Sbjct: 153 NAVKVVDFGI 162
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 380 SLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGM 414
LR + G H D PGNL D L DFG+
Sbjct: 140 GLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL 174
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 348 MEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVALADGSL 407
ME++ G LTD + R + + + E + +L L G H D +++ DG +
Sbjct: 121 MEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRV 180
Query: 408 AYFDFGMMGDIPR 420
DFG I +
Sbjct: 181 KLSDFGFCAQISK 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,088,643
Number of Sequences: 62578
Number of extensions: 849455
Number of successful extensions: 3055
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3012
Number of HSP's gapped (non-prelim): 52
length of query: 739
length of database: 14,973,337
effective HSP length: 106
effective length of query: 633
effective length of database: 8,340,069
effective search space: 5279263677
effective search space used: 5279263677
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)