BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044984
(739 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/541 (41%), Positives = 317/541 (58%), Gaps = 57/541 (10%)
Query: 105 FSRFGPFLAFYRAAIISFHVLK--LAIWQIFVHDINK-----RAVTFRKTLVSLGPFYIK 157
F R P R I F +L+ L IW + + +A+ R+ L +LGP YIK
Sbjct: 61 FYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRAKAIQLRELLTNLGPTYIK 120
Query: 158 LGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFADISPKPIA 217
+GQALSTRPD++PPV+ EL+ LQDQ+P + +VA R IE +LG E++A++SP+PIA
Sbjct: 121 VGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIA 180
Query: 218 AASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAK-ARKDLLVAV 276
AASLGQVYK L +GE VAVKVQRP + +TLD + + + +R K R DL+
Sbjct: 181 AASLGQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRSVKRLRSDLVAIT 240
Query: 277 NEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNVKTNKHNCIKVPKI 336
+E+ +F+E++Y E N E+FA LY P I VP I
Sbjct: 241 DELASRVFEEMNYYQEAINGEKFAQLYGSLPE----------------------IYVPSI 278
Query: 337 YWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHP 396
YW T + VLTMEW++GIKLT+ ++ ++ L++ G+ CSLRQLLE GFFHADPHP
Sbjct: 279 YWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHP 338
Query: 397 GNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDSLGLANDFLSLGFIPEGFD 456
GNL+A+ADG LAY DFGMM I + R GLI+ +VH VNRD LA D++ L F+ D
Sbjct: 339 GNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTD 398
Query: 457 IQAVSDALQASFGDGTRQSQ---DFQGVMDQLYDVMYEFNFSLPPDYALVIRALGSLEGT 513
++ + AL FG+ S +F+ + DQ+ +MYEF F +P YAL+IR++ +LEG
Sbjct: 399 LKPIIPALGQVFGNALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGI 458
Query: 514 AKVLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLIRNNGSIRWNRLERLIAAISEQ 573
A +DP+FKV+ +YP++ RLL D + ++R L++LL + GS RWNRLE L+
Sbjct: 459 AIGIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFK-EGSFRWNRLENLL------ 511
Query: 574 ASEEITNSEENFSQRLGWKSFDMRAVV-AATEDLLLFILSEKGQMVRVFLLRDIIRAADT 632
NS FD V+ ATE F+LS++GQ +R L+ +++ + D
Sbjct: 512 --RNAKNS----------PGFDFDYVLNEATE----FLLSDRGQFIRDRLVAELVNSIDQ 555
Query: 633 F 633
Sbjct: 556 L 556
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/570 (37%), Positives = 322/570 (56%), Gaps = 63/570 (11%)
Query: 110 PFLAFYRA----AIISFHVLKLAIWQI---FVHDINKRAVTFRKTLVSLGPFYIKLGQAL 162
PF A R+ + LKL I Q ++ KRA+ R+ LGP ++KLGQ L
Sbjct: 109 PFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGL 168
Query: 163 STRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFADISPKPIAAASLG 222
STRPD+ PP Y +EL++LQD +P + A IE +L + + +F+ +SP+PIAAASLG
Sbjct: 169 STRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLG 228
Query: 223 QVYKAHL-HSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAK-ARKDLLVAVNEMV 280
QVYKA L +SG++VAVKVQRPG+ ++ LD L + +G + ++ D+L ++E
Sbjct: 229 QVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDFITTDVLTLIDEFA 288
Query: 281 RHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNVKTNKHNCIKVPKIYWDL 340
++ E++Y+ E +NA RF LY+ KA V VP I+WD
Sbjct: 289 CRVYQELNYVQEAQNARRFKKLYA----------DKADVL------------VPDIFWDY 326
Query: 341 TCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLV 400
T + VLTMEW++G KL +++ ++ L L++ G+ CSLRQLLE GFFHADPHPGNL+
Sbjct: 327 TSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLL 386
Query: 401 ALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDSLGLANDFLSLGFIPEGFDIQAV 460
A DG LA+ DFGMM + P R +I +VH VNRD +A D+ +L F+ D+ +
Sbjct: 387 ATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPI 446
Query: 461 SDALQASFGDG---TRQSQDFQGVMDQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKVL 517
AL+ F D T +F+ ++D L V Y++ F++PP YAL++R+L LEG A
Sbjct: 447 IPALRDFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYA 506
Query: 518 DPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLIRNNGSIRWNRLERLIAAISEQASEE 577
DP+FKV+ +SYP+ RLL DPNP +R L +LL + +G RWNRLE L+ +Q S+
Sbjct: 507 DPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFK-DGKFRWNRLENLL----QQGSK- 560
Query: 578 ITNSEENFSQRLGWKSFDMRAVVAATEDLLLFILSEKGQMVRVFLLRDIIRAADTFVHDE 637
+ +FS + A + +L +L G+ +R+ ++++ +R ++
Sbjct: 561 ----DRDFSAK------------DALQPVLKLLLDPNGEELRLLVIKEAVRVSEAI---- 600
Query: 638 VFGCILEKKNEARLTPETERQAMLTRVVNG 667
G +++ N PE R + NG
Sbjct: 601 ALGTVVDTYNS---LPEFLRSLVFNGNGNG 627
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 357 bits (917), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 290/502 (57%), Gaps = 55/502 (10%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
RA RK LV LGP Y+K+ QA+S+RPD++PP+Y ELS LQDQI P++T+VA IE +
Sbjct: 119 RAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDE 178
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL-HSGELVAVKVQRPGMPLSLTLDAVLFQMI 258
LG+ + E+F++ISP+P+AAASLGQVY+A L SG++VAVKVQRPG+ ++ LD ++ + I
Sbjct: 179 LGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYI 238
Query: 259 GGQLKRFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKAS 318
G +K+ + DL V+E +F E+DY+ E +N +F LY
Sbjct: 239 AGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLY--------------- 283
Query: 319 VANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLY 378
+K + VPK+Y + + VL MEW++G KL + +N L++ G+Y
Sbjct: 284 --GGIKD-----VLVPKMYTEYSTSKVLVMEWVEGQKLNE--------VNDLYLVEVGVY 328
Query: 379 CSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDS 438
CS QLLE GF+HADPHPGN + DG LAY DFGMMGD R G ++ +H VNRD
Sbjct: 329 CSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDF 388
Query: 439 LGLANDFLSLGFIPEGFDIQAVSDALQASFGDGTR---QSQDFQGVMDQLYDVMYEFNFS 495
LA DF++LG +P + AV+ AL F D ++ F ++ L MY F F
Sbjct: 389 KALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKFR 448
Query: 496 LPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLIRNN 555
+PP ++LVIR+L LEG A + P++KV+ S+YP++ ++L D +P ++ L+ LL
Sbjct: 449 IPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLY-EE 507
Query: 556 GSIRWNRLERLIAAI--SEQA--SEEITNSEENFSQRLGWKSFDMRAVVAATEDLLLFIL 611
G R +RLE L++ +E A + + +E N A + +L F
Sbjct: 508 GVFRIDRLESLLSESLRTETALVQKPVVGTESNI----------------AMKQMLAFTF 551
Query: 612 SEKGQMVRVFLLRDIIRAADTF 633
+E+G VR LLR+ + D +
Sbjct: 552 TEQGSFVREILLREFAKGLDAY 573
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/484 (41%), Positives = 288/484 (59%), Gaps = 35/484 (7%)
Query: 97 YSSKSASIFSRFGPFLAFYRA--AIISF-HVLKLAIWQIFVHDIN----KRAVTFRKTLV 149
Y++++ + + R P+ +RA + SF L +W + + +RA R+ L
Sbjct: 19 YNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLT 78
Query: 150 SLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFA 209
LGP +IK+GQALSTRPD++ + +EL KLQDQ+PP+ D+A + +E QLG+KV E +
Sbjct: 79 KLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYR 138
Query: 210 DISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAKAR 269
+IS P+AAASLGQVY+A L SGE VAVKVQRP + L+LD L ++ + RF
Sbjct: 139 EISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLN 198
Query: 270 --KDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNVKTNK 327
DL + V+E +F+EIDY+ EG+NAE+FA + HG
Sbjct: 199 LGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENF---------HGDAE---------- 239
Query: 328 HNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEV 387
+KVP IYW + + VLT+EWI G KLTD ++ A L+ +I G+ LRQLLE
Sbjct: 240 ---VKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEH 296
Query: 388 GFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDSLGLANDFLS 447
GFFHADPHPGNL A DG +AY DFGMM + + + +V +N+D L L DF++
Sbjct: 297 GFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIA 356
Query: 448 LGFIPEGFDIQAVSDALQASFGDGTRQS-QD--FQGVMDQLYDVMYEFNFSLPPDYALVI 504
LGF+ DI + AL+ FG QS QD F+ + D ++MY++ F +P +AL+I
Sbjct: 357 LGFLAPNTDITPIIPALENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALII 416
Query: 505 RALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLIRNNGSIRWNRLE 564
R+L + EG A LDP+FK++E +YP+V RLL +P +R+ L +L + NG +W RLE
Sbjct: 417 RSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLIDVLFK-NGKFQWQRLE 475
Query: 565 RLIA 568
+++
Sbjct: 476 NMLS 479
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 173/448 (38%), Positives = 251/448 (56%), Gaps = 31/448 (6%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
RA R L +LGP +IK GQ L+ RPD++ Y EL LQD +PP+ +VA IE +
Sbjct: 166 RARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEE 225
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLH-SGELVAVKVQRPGMPLSLTLDAVLFQMI 258
LG + +F+ IS + IAAASLGQVY+A L +GE VA+KVQRP + + D LF+ +
Sbjct: 226 LGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTL 285
Query: 259 GGQLKRFA--KARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKK 316
L F+ K + + V+E + +E+DY LE +N E F + P
Sbjct: 286 ASFLNGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDP--------- 336
Query: 317 ASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEG 376
+K+P +Y +L VL MEWIDGI+ TD +K A ++ + G
Sbjct: 337 -------------TVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVG 383
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNR 436
+ +LRQLLE G FH DPHPGN+ A+ DG +AY DFG + + + + LI +VH VN
Sbjct: 384 VSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNE 443
Query: 437 DSLGLANDFLSLGFIPEGFDIQAVSDALQA----SFGDGTRQSQDFQGVMDQLYDVMYEF 492
D +ANDF LGF+ + D+ + AL+A S G G +F+ V Q ++Y+F
Sbjct: 444 DYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGL-ADFNFRSVTGQFNKLVYDF 502
Query: 493 NFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQLLI 552
+P ++LVIR+L + EG L PDFK +E +YP+V RLL DPNP +R+ L Q+L
Sbjct: 503 PIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLF 562
Query: 553 RNNGSIRWNRLERLIAAISEQASEEITN 580
+ +G +W RLE L++ E ++ +N
Sbjct: 563 K-DGVFQWKRLENLLSLAKENVAKMSSN 589
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 139 KRAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIET 198
++A R+ L+SLGP +IK+GQ STR D+ P Y +ELSKLQD++P ++ + A IE
Sbjct: 83 RQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEE 142
Query: 199 QLGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMI 258
+LG +++++ P P+AAASLGQV+KA LH+GE V VKVQRPG+ T+D + + I
Sbjct: 143 ELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKI 202
Query: 259 GGQLKRFAK--ARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKK 316
+ K +D E + ++ E DY+ EG++A+ F +
Sbjct: 203 AQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNF------------- 249
Query: 317 ASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEG 376
+ +KVP++YW T +LT+E++ GIK++ L+ A L R++L G
Sbjct: 250 ---------RGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLG 300
Query: 377 LYCSLRQLLEVGFFHADPHPGNL-VALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVN 435
L QLL GFFHADPHPGNL V+ G L ++DFGMMG+I + L+ L
Sbjct: 301 ARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAE 360
Query: 436 RDSLGLANDFLSLGFIPEGFDIQAVSDALQ---ASFGDGTRQSQDFQGVMDQLYDVMYEF 492
+++ + N ++LG + E D+ + ++Q +F D + Q + D LY++ Y+
Sbjct: 361 KNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQ 420
Query: 493 NFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVI 532
F P + V+RA +LEG K LDPDF + + PF +
Sbjct: 421 PFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFAL 460
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 228/420 (54%), Gaps = 31/420 (7%)
Query: 139 KRAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIET 198
+RA + L+ LGP +IK+GQ+LSTR D++P Y + ++LQD++PP+ + A+ IE
Sbjct: 56 RRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQ 115
Query: 199 QLGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMI 258
+L + E+F P+A+ASLGQV++A L +GE V VKVQRPG+ L LD L
Sbjct: 116 ELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQT 175
Query: 259 GGQLKRFAK-----ARKDLLVAV-NEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQK 312
KR+ A+K + A+ E +F EIDYI EGKNAERF ++ P
Sbjct: 176 LRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPR---- 231
Query: 313 HGKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKL 372
++VP+IYW T + VLT+E++ GIK+ D L+ A +N +
Sbjct: 232 ------------------VRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLV 273
Query: 373 IDEGLYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVH 432
I G+ L+QLL GFF +DPHPGN+ + G L ++DFG M ++ + ++Q
Sbjct: 274 IQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFA 333
Query: 433 YVNRDSLGLANDFLSLGFI-PEG--FDIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVM 489
+ +D+ + + +G + P+G I+ + + L +F D + F V +++Y +
Sbjct: 334 VLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMF 393
Query: 490 YEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKILRQ 549
+ F LPP +++++ +L+G A+ LDP + +I +S PF+ +A P + L Q
Sbjct: 394 QQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQ 453
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 225/444 (50%), Gaps = 41/444 (9%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R L SLGP +IK GQ LSTRPD++P Y EL+KLQD++PP+ ++ IE L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGG 260
G + +++A+ +PIA+AS+ QV+KA LHSGE VAVKV RP + + D L +
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAA 170
Query: 261 QLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKAS 318
++R F+ R+ L V E +++ DE+D + E NA + +
Sbjct: 171 WVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNF--------------- 215
Query: 319 VANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLY 378
+ N + VPK+++D VLT+EW+DG + D LK ++ KL D G+
Sbjct: 216 -------HNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVE 268
Query: 379 CSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDS 438
Q+ GFFHAD HPGN++ AD DFG++G + + + L + + NRD
Sbjct: 269 IFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDY 328
Query: 439 LGLANDFLSLGFIPEGFDIQAVSDALQA----SFGDGTRQSQDFQGVMDQLYDVMYEFNF 494
+A + G++P + + A++A F Q F V+ +L++V FN
Sbjct: 329 RRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNKPISQIS-FGLVLMRLFEVSRRFNV 387
Query: 495 SLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIG------------RLLADPNPD 542
+ P L+ + L ++EG + LDPD + +++ PF++ R L + PD
Sbjct: 388 EIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPD 447
Query: 543 MRKILRQLLIRNNGSIRWNRLERL 566
+I+ L + + I NR + +
Sbjct: 448 WAQIIPSLPRKISALIDENRQQEM 471
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 223/444 (50%), Gaps = 41/444 (9%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R L SLGP +IK GQ LSTRPD++P Y EL+KLQD++PP+ ++ IE L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGG 260
G + +++A+ +PIA+AS+ QV+KA LHSGE VAVKV RP + + D L + G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAG 170
Query: 261 QLKRFAKARKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKAS 318
++R K L V E +++ DE+D + E NA + +
Sbjct: 171 WVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNF--------------- 215
Query: 319 VANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLY 378
+ + VPK+++D VLT+EW+DG ++D LK ++ KL D G+
Sbjct: 216 -------QNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVE 268
Query: 379 CSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDS 438
Q+ GFFHAD HPGN++ AD DFG++G + + + L + + NRD
Sbjct: 269 IFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDY 328
Query: 439 LGLANDFLSLGFIPEGFDIQAVSDALQA----SFGDGTRQSQDFQGVMDQLYDVMYEFNF 494
+A + G++P + + A++A F Q F V+ +L++V FN
Sbjct: 329 RRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNKPISQIS-FGLVLMRLFEVSRRFNV 387
Query: 495 SLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIG------------RLLADPNPD 542
+ P L+ + L ++EG + LDPD + +++ PF++ R L + PD
Sbjct: 388 EIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPD 447
Query: 543 MRKILRQLLIRNNGSIRWNRLERL 566
+I+ L + + I NR + +
Sbjct: 448 WAQIIPSLPRKISALIDENRQQEM 471
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 206/400 (51%), Gaps = 38/400 (9%)
Query: 145 RKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKV 204
R L SLGP ++K GQ LSTR D+LPP Y EL+ LQD++PP+ D+A + +E LG KV
Sbjct: 53 RLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKV 112
Query: 205 SEVFADISPKPIAAASLGQVYKAHLHS-----GELVAVKVQRPGMPLSLTLDAVLFQMIG 259
E+F D KP+A+AS+ QV+KA L G VAVKV RPG+ + D L + +
Sbjct: 113 EELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLA 172
Query: 260 GQLKRFAKARKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
G +++ K L V E +++ DE+D + E NA +
Sbjct: 173 GWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANA--------------------S 212
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ N K + + + VP++++D + + VLT+EW+ GI + L+ A ++ +KL G+
Sbjct: 213 QLRRNFKGS--DMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGV 270
Query: 378 YCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMG---DIPRHFRVGLIQVLVHYV 434
Q+ GFFHAD HPGN+ ADG DFG++G D +H+ L + +
Sbjct: 271 EIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHY---LAVNFLAFF 327
Query: 435 NRDSLGLANDFLSLGFIP---EGFDIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVMYE 491
NRD +A + G++P +++A + + F V+ +L++
Sbjct: 328 NRDYHRVATAHIESGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRR 387
Query: 492 FNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + LDP+ + +++ PF+
Sbjct: 388 FNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPFL 427
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 198/414 (47%), Gaps = 31/414 (7%)
Query: 127 LAIWQIFVHDINKRAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPP 186
LA W +F R R L LGP ++K GQ LSTR D+LP + L +LQD++PP
Sbjct: 38 LAPWHLFPQPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPP 97
Query: 187 YATDVAMRSIETQLGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPL 246
+ ++ A IE LG VSE+FA+ SP P+A+AS+ QV+ A L +G+ V VKV RPG+
Sbjct: 98 FPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEK 157
Query: 247 SLTLDAVLFQMIGGQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYS 304
+ D L ++ G L+++ K L + V + + DE+D E NA + +
Sbjct: 158 VIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFE 217
Query: 305 ICPYDQQKHGKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKR 364
P I +P I WD T K VL ME I GI + D L++
Sbjct: 218 NSP----------------------LIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEK 255
Query: 365 ASLNRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVA----LADGSLAYFDFGMMGDIPR 420
A +N R L ++G+ Q+ FFHAD HPGN+ AD DFG++G +
Sbjct: 256 AGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAP 315
Query: 421 HFRVGLIQVLVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQD 477
+ L + L+ + RD +A + G++P + A++ + +
Sbjct: 316 DDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIFERPLKDIS 375
Query: 478 FQGVMDQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
F + +L+ FN + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 376 FGHFLLRLFQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 203/411 (49%), Gaps = 31/411 (7%)
Query: 130 WQIFVHDINKRAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYAT 189
W++F R R+ L LGP ++K GQ LSTR D+LP EL +LQD++PP+A+
Sbjct: 41 WRLFPKPQIPRGERLRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFAS 100
Query: 190 DVAMRSIETQLGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLT 249
D+A+R IE L VSE+FAD P+A+AS+ QV+ A L +G+ V VKV RPG+ ++
Sbjct: 101 DMAVRIIEESLKSPVSELFADFQTYPMASASIAQVHAATLKNGKEVVVKVIRPGIEKTIR 160
Query: 250 LDAVLFQMIGGQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICP 307
LD L ++ ++ + + K L + V + + DE+D E N +
Sbjct: 161 LDIALMLLVARLVENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQL-------- 212
Query: 308 YDQQKHGKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASL 367
K + A + I +P++YW++T VL ME I G+ + D L++A++
Sbjct: 213 --------KRNFAGS------ELIYIPEVYWEMTHSRVLVMERIYGVPIADVEQLRKANV 258
Query: 368 NRRKLIDEGLYCSLRQLLEVGFFHADPHPGNLVA----LADGSLAYFDFGMMGDIPRHFR 423
N + L + G+ Q+ FFHAD HPGN+ A+ D G++G + +
Sbjct: 259 NMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPANPRYIAIDCGIVGTLTPEDQ 318
Query: 424 VGLIQVLVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQG 480
L + L+ + RD +A +S G++P + A++ + + F
Sbjct: 319 SYLARNLLAFFRRDYRQVAVLHISSGWVPGHTRVNEFEAAIRTVCEPIFERPLKDISFGQ 378
Query: 481 VMDQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ +L+ F+ + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 379 FLMRLFQTARRFDMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFL 429
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 193/401 (48%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LPP EL++LQDQ+PP+ D A+ IE Q
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLD-AVLFQMI 258
LG VS++FA +P+A+AS+ QV+ A L SGE V VKV RPG+ + D A LF +
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLA 174
Query: 259 GGQLKRFAKARKDLLV-AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+ A AR+ V V++ + +FDE+D + E NA + + P
Sbjct: 175 RIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSP---------- 224
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWDL VL ME I G+ +TD L + + L + G+
Sbjct: 225 ------------LLYVPQVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLVALADGSLA----YFDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ + D G++G + + L + L+ +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F ++ +L+
Sbjct: 333 FKRDYRKVAQLHIDSGWVPADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFL 433
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 201/404 (49%), Gaps = 35/404 (8%)
Query: 141 AVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQL 200
AV R+ L SLGP ++K GQ LSTR D+LP + EL+KLQDQ+PP+ + VA+ +E L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 201 GVKVSEVFADISPKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQ 256
G ++ +F + P+A+AS+ QV+ A L H G+ VAVKV RP M + D L +
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 257 MIGGQLKR-FAKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHG 314
I +R +A R+ V E +++ DE+D + E N + ++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------- 220
Query: 315 KKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLID 374
+ + VP+++WD + VL ME + G+ ++ L+ A ++ KL
Sbjct: 221 --------------DLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAR 266
Query: 375 EGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVL 430
EG+ Q+ GFFHAD HPGN+ D G DFG++G + + L Q
Sbjct: 267 EGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNF 326
Query: 431 VHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYD 487
+ + RD +A L G++P ++ + A++A + D + V+ +L+
Sbjct: 327 LAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFS 386
Query: 488 VMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 387 TSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 211/452 (46%), Gaps = 54/452 (11%)
Query: 112 LAFYRAAIISFHVLKLAIWQIFVHDINKR-------------------AVTFRKTLVSLG 152
+ F R I F V++ + ++ + +N R V R L SLG
Sbjct: 1 MRFLRFLKIFFTVIRFGLDEMMLSRVNDRRVRLLLRITTIGRKFDAPPGVRLRLALESLG 60
Query: 153 PFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFADIS 212
P ++K GQ LSTR D+LP EL+KLQDQ+PP+ + VA+R +E LG V +F D
Sbjct: 61 PIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAPVDVLFDDFE 120
Query: 213 PKPIAAASLGQVY----KAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAKA 268
P+A+AS+ QV+ KA H+G+ VAVKV RP M + D L + I +R
Sbjct: 121 RVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWAERLWAD 180
Query: 269 RKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNVKTN 326
K L V E +++ DE+D + E N + ++
Sbjct: 181 GKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------------------- 220
Query: 327 KHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLE 386
+ + VP++YW+ VL ME + G+ ++ L+ A ++ KL EG+ Q+
Sbjct: 221 --DLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFR 278
Query: 387 VGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDSLGLA 442
GFFHAD HPGN+ D G DFG++G + + L Q + + RD +A
Sbjct: 279 DGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVA 338
Query: 443 NDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMYEFNFSLPPD 499
L G++P ++ + A++A + D + V+ +L+ FN + P
Sbjct: 339 TLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQ 398
Query: 500 YALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
L+ + + ++EG + LDP+ + +++ P++
Sbjct: 399 LVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 37/424 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ L LGP ++K GQ LSTR D+LPP EL+ LQD++PP+ + VA+ +IE
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERA 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHS--GEL--VAVKVQRPGMPLSLTLDAVLF 255
V +VF PIA+AS+ QV+ A + + GE+ VAVKV RP M + D L
Sbjct: 109 FRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALM 168
Query: 256 QMIGGQLKRFAKARKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKH 313
M+ G +++ + K L V E +++ DE+D + E NA
Sbjct: 169 AMMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANA----------------- 211
Query: 314 GKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLI 373
A + N+ + + + +P+++WD V+ ME ++G+ + L+ A ++ KL
Sbjct: 212 ---AQLRRNMASLE--LVLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLA 266
Query: 374 DEGLYCSLRQLLEVGFFHADPHPGNL-VALAD---GSLAYFDFGMMGDIPRHFRVGLIQV 429
+G+ Q+ GFFHAD HPGN+ V+LA G DFG++G + + L Q
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQN 326
Query: 430 LVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLY 486
V + RD +A L G++PEG I + A++ + D + V+ +L+
Sbjct: 327 FVAFFRRDYKRVAELHLESGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLF 386
Query: 487 DVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKI 546
F+ + P L+ + L ++EG + LDP+ + ++ PF+ ++ P +K+
Sbjct: 387 QTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGP--KKL 444
Query: 547 LRQL 550
+QL
Sbjct: 445 FQQL 448
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 199/401 (49%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R V R L LGP ++K GQ LSTR D++P EL+KLQD++PP+ +DV+ ++
Sbjct: 49 RGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQS 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG + EVFA P+A+AS+ QV+ LH G VAVKV RP + + D L ++
Sbjct: 109 LGRPIEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAA 168
Query: 260 GQLKRFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASV 319
L+R + + L R + E D L +D+ G++A+
Sbjct: 169 AWLERLSPDGRRL------RPREVVAEFDNYL----------------HDELDLGREAAN 206
Query: 320 ANNVKTNKH--NCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
A ++ N + I +P++ WDL+ VL ME + G+ ++ L+ A ++ KL +G+
Sbjct: 207 AAQLRRNMGGLDLIMLPEMIWDLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGV 266
Query: 378 YCSLRQLLEVGFFHADPHPGN-LVALADGSLAYF---DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ GFFHAD HPGN +V+ A + + DFG++G + + L Q + +
Sbjct: 267 TIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAF 326
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + + A++A D + V+ +L+
Sbjct: 327 FRRDYRRVAELHIESGWVPASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSR 386
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + LDP+ + +++ PF+
Sbjct: 387 RFNVEIQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPFL 427
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 219/464 (47%), Gaps = 57/464 (12%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP ++K GQ LSTR D+LPP EL+KLQD++PP+ +A +E
Sbjct: 49 RGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERS 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHS----GELVAVKVQRPGMPLSLTLDAVLF 255
LG +S +F P+A+AS+ QV+ A L G VAVKV RPGM + D L
Sbjct: 109 LGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALM 168
Query: 256 QMIGGQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKH 313
+ + +++ K L V E +++ DE+D + E NA + ++
Sbjct: 169 RDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFA--------- 219
Query: 314 GKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLI 373
K + VP+++WD V ME + G++++ L+ A ++ KL
Sbjct: 220 -------------KSELLLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLA 266
Query: 374 DEGLYCSLRQLLEVGFFHADPHPGN-LVALADGSLAYF---DFGMMGDIPRHFRVGLIQV 429
+G+ Q+ GFFHAD HPGN LV++A SL + DFG++G + + L Q
Sbjct: 267 RDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQN 326
Query: 430 LVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLY 486
+ + RD +A + G+ PE ++ + A++A + D V+ +L+
Sbjct: 327 FLAFFQRDYHRVALLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLF 386
Query: 487 DVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPF-------------VIG 533
FN + P L+ + L ++EG + LDPD + +++ PF ++
Sbjct: 387 QTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFLERWMHEQIGWRGLVD 446
Query: 534 RL------LADPNPDMRKILRQLL---IRNNGSIRWNRLERLIA 568
RL A+ PD ++ Q+L R+NGS + L L+A
Sbjct: 447 RLKIEAPQWANMLPDFPRLAHQILERHARDNGSAQTATLSALLA 490
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 185/367 (50%), Gaps = 58/367 (15%)
Query: 146 KTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVS 205
K LV LGPFYIKLGQ LSTRPD+LPP Y L+ LQ +PP ++ + +
Sbjct: 48 KILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQPLG 107
Query: 206 EVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGG--QLK 263
E F +I +PIAA S+GQ+++A L SGE VA+KV+RPG+ + + D++L + + L
Sbjct: 108 ETFQEIESEPIAAGSIGQIHRAVLQSGETVAIKVKRPGIDVIVEQDSLLIKDVAELLALT 167
Query: 264 RFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNV 323
F + D++ +E + + E+++ E A+ NN+
Sbjct: 168 EFGQ-NYDIVKLADEFTQTVKAELNFDTE------------------------AAYTNNL 202
Query: 324 KTN-------KHNCIKVPKIYWDLTCKCVLTMEWIDGI-----KLTDEIGLKRASLNRRK 371
+TN N + +PK+YW+LT + L +EW+DG+ LT K + +++
Sbjct: 203 RTNLAKTTWFDPNQLVIPKVYWELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKE 262
Query: 372 LIDEGLYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGLIQVLV 431
+ +QL GFFHADPHPGN+ LADG LA D GM+G + R L ++L+
Sbjct: 263 ITTLLFRAFFQQLYVDGFFHADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLL 322
Query: 432 HYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQASFG--DGTRQSQDFQGVMDQLYDV- 488
V+ D+ A ++ L S G + R D++ ++ + YD+
Sbjct: 323 AIVDLDAKRCAQ----------------LTVELSESVGRVNFQRLEVDYERMLRKYYDLS 366
Query: 489 MYEFNFS 495
+ EFNFS
Sbjct: 367 LSEFNFS 373
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 211/456 (46%), Gaps = 62/456 (13%)
Query: 112 LAFYRAAIISFHVLKLAIWQIFVHDINKR-------------------AVTFRKTLVSLG 152
+ F R I F V++ + ++ + +N R V R L SLG
Sbjct: 1 MRFLRFLKIFFTVIRFGLDEMMLSRVNDRRVRLLLRITTIGRKFDQPPGVRLRLALESLG 60
Query: 153 PFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFADIS 212
P ++K GQ LSTR D+L P EL+KLQDQ+PP+ + VA+ IE LG V +F D
Sbjct: 61 PIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFE 120
Query: 213 PKPIAAASLGQVYKAHL----HSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAKA 268
P+A+AS+ QV+ A L H+G+ VAVKV RP M + D L + I +R
Sbjct: 121 RVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIAVWAERLWAD 180
Query: 269 RKDLLV--AVNEMVRHMFDEIDYILEGKNAER----FASLYSICPYDQQKHGKKASVANN 322
K L V E +++ DE+D + E N + FA L
Sbjct: 181 GKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------------------- 220
Query: 323 VKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLR 382
+ + VP++YW+ VL ME + G+ ++ L+ A ++ KL EG+
Sbjct: 221 ------DLLLVPEMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFT 274
Query: 383 QLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDS 438
Q+ GFFHAD HPGN+ D G DFG++G + + L Q + + RD
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
Query: 439 LGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMYEFNFS 495
+A L G++P ++ + A++A + D + V+ +L+ FN
Sbjct: 335 HRVATLHLESGWVPATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVE 394
Query: 496 LPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 395 IQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 211/456 (46%), Gaps = 62/456 (13%)
Query: 112 LAFYRAAIISFHVLKLAIWQIFVHDINKR-------------------AVTFRKTLVSLG 152
+ F R I F V++ + ++ + +N R V R L SLG
Sbjct: 1 MRFLRFLKIFFTVIRFGLDEMMLSRVNDRRVRLLLRITTIGRKFDAPPGVRLRLALESLG 60
Query: 153 PFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFADIS 212
P ++K GQ LSTR D+LP EL+KLQDQ+PP+ + VA+ +E LG V +F D
Sbjct: 61 PIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFE 120
Query: 213 PKPIAAASLGQVY----KAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAKA 268
P+A+AS+ QV+ KA H+G+ VAVKV RP M + D L + I +R
Sbjct: 121 RVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWAERLWAD 180
Query: 269 RKDLLV--AVNEMVRHMFDEIDYILEGKNAER----FASLYSICPYDQQKHGKKASVANN 322
K L V E +++ DE+D + E N + FA L
Sbjct: 181 GKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGL-------------------- 220
Query: 323 VKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLR 382
+ + VP++YW+ VL ME + G+ ++ L+ A ++ KL EG+
Sbjct: 221 ------DLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFT 274
Query: 383 QLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQVLVHYVNRDS 438
Q+ GFFHAD HPGN+ D G DFG++G + + L Q + + RD
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334
Query: 439 LGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMYEFNFS 495
+A L G++P ++ + A++A + D + V+ +L+ FN
Sbjct: 335 HRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVE 394
Query: 496 LPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ P L+ + + ++EG + LDP+ + +++ P++
Sbjct: 395 IQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 202/415 (48%), Gaps = 35/415 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ L LGP ++K GQ LSTR D+LPP EL+ LQD++PP+ DVA+ +IE
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERA 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL---HSGEL-VAVKVQRPGMPLSLTLDAVLF 255
V EVF P+A+AS+ QV+ A + H E VAVKV RPGM + D L
Sbjct: 109 FRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLM 168
Query: 256 QMIGGQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKH 313
+ + G ++ + K L V E ++ DE+D I E NA
Sbjct: 169 RAMAGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANA----------------- 211
Query: 314 GKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLI 373
A + N++ + +++P+I WD VL ME + G+ ++ L+ A ++ R+L
Sbjct: 212 ---AQLRRNME--RLGLVRIPEILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLA 266
Query: 374 DEGLYCSLRQLLEVGFFHADPHPGNL-VALADGSLAYF---DFGMMGDIPRHFRVGLIQV 429
+G+ Q+ GFFHAD HPGN+ V+L GS + DFG++G + + L Q
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQN 326
Query: 430 LVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLY 486
+ RD +A + G++P I + A++A + D + V+ +L+
Sbjct: 327 FTAFFRRDYKRVAELHVESGWVPADTRINELESAIRAVCEPYFDRPLKEISLGMVLMRLF 386
Query: 487 DVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNP 541
F+ + P L+ + L ++EG + LDP+ + ++ PF+ +L P
Sbjct: 387 QTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPFLEKWMLDQMGP 441
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 206/425 (48%), Gaps = 37/425 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ L LGP ++K GQ LSTR D++PP +EL++LQD++PP+ + +A+ +IE
Sbjct: 49 RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERA 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHS----GELVAVKVQRPGMPLSLTLDAVLF 255
K+ ++F +P+A+AS+ QV+ A + VAVKV RPGM + D L
Sbjct: 109 FRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALM 168
Query: 256 QMIGGQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKH 313
M+ ++R + K L V E ++ DE+D I E NA
Sbjct: 169 HMMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNA----------------- 211
Query: 314 GKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLI 373
A + N++ + + +P++YWD V+ M+ + G+ ++ L+ A ++ KL
Sbjct: 212 ---AQLRRNMEG--LDLVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLA 266
Query: 374 DEGLYCSLRQLLEVGFFHADPHPGNLVALAD----GSLAYFDFGMMGDIPRHFRVGLIQV 429
+G+ Q+ GFFHAD HPGN++ + G DFG++G + + + L Q
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQN 326
Query: 430 LVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLY 486
+ RD +A + G++P + + A++A + D V+ +L+
Sbjct: 327 FTAFFRRDYKRVAELHIESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLF 386
Query: 487 DVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFVIGRLLADPNPDMRKI 546
F + P L+ + L ++EG + LDP+ + ++ PF+ +L P +++
Sbjct: 387 QTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP--QRL 444
Query: 547 LRQLL 551
R+LL
Sbjct: 445 WRELL 449
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 198/406 (48%), Gaps = 37/406 (9%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ L SLGP ++K GQ LSTR D++PP EL+ LQD++PP+ DVA+ +IE
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL-----HSGELVAVKVQRPGMPLSLTLDAVL 254
+ EVF +P+A+AS+ QV+ A + H+ E VAVKV RPGM + D L
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHARE-VAVKVLRPGMLPVIDKDLAL 167
Query: 255 FQMIGGQLKRFAKARKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQK 312
+M+ G ++ + K L V E ++ DE+D + E NA
Sbjct: 168 MRMMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANA---------------- 211
Query: 313 HGKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKL 372
A + N++ + + +P+++WD VL ME + G+ + L+ A ++ KL
Sbjct: 212 ----AQLRRNMQG--LDLVLIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKL 265
Query: 373 IDEGLYCSLRQLLEVGFFHADPHPGNL-VALAD---GSLAYFDFGMMGDIPRHFRVGLIQ 428
+G+ Q+ GFFHAD HPGN+ V+LA G DFG++G + + L Q
Sbjct: 266 ARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQ 325
Query: 429 VLVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQL 485
+ RD +A + G++P + + A++ + D + V+ +L
Sbjct: 326 NFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRL 385
Query: 486 YDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ F + P L+ + L ++EG + LDPD + ++ PF+
Sbjct: 386 FQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFL 431
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 199/406 (49%), Gaps = 37/406 (9%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ L SLGP ++K GQ LSTR D++PP EL+ LQD++PP+ DVA+ +IE
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL-----HSGELVAVKVQRPGMPLSLTLDAVL 254
+ EVF +P+A+AS+ QV+ A + H+ E VAVKV RPGM + D L
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHARE-VAVKVLRPGMLPVIDKDLAL 167
Query: 255 FQMIGGQLKRFAKARKDLLV--AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQK 312
+M+ G ++ + K L V E ++ DE+D + E NA
Sbjct: 168 MRMMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANA---------------- 211
Query: 313 HGKKASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKL 372
A + N++ + + +P+++WD VL ME + G+ + L+ A ++ KL
Sbjct: 212 ----AQLRRNMQG--LDLVLIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKL 265
Query: 373 IDEGLYCSLRQLLEVGFFHADPHPGNL-VALADGSLAYF---DFGMMGDIPRHFRVGLIQ 428
+G+ Q+ GFFHAD HPGN+ V+LA + + DFG++G + + L Q
Sbjct: 266 ARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQ 325
Query: 429 VLVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQL 485
+ RD +A + G++P + + A++ + D + V+ +L
Sbjct: 326 NFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRL 385
Query: 486 YDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ F + P L+ + L ++EG + LDPD + ++ PF+
Sbjct: 386 FQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFL 431
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 194/401 (48%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL +LQD++PP+ + ++++ IE Q
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLD-AVLFQMI 258
LG K+SEVF+ +P+A+AS+ QV+ A L +GE V VKV RPG+ + D A LF +
Sbjct: 115 LGKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFILA 174
Query: 259 GGQLKRFAKARKDLLV-AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
K A AR V V++ + ++DE+D + E NA + + P
Sbjct: 175 RAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP---------- 224
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI++TD L + + L + G+
Sbjct: 225 ------------LLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAY--FDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ + S Y D G++G + + L + L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 190/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
RAV R L LGP +IK GQ LSTR D+LP EL+ LQD++PP+ ++ IE Q
Sbjct: 56 RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQ 115
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG +V E FA +P+A+AS+ QV+ A L +GE V VKV RPG+ + D +
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFA 175
Query: 260 GQLKRFA-KARKDLLV-AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + +AR+ LV V++ + ++DE+D + E NA + + P
Sbjct: 176 RLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP---------- 225
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP+IYWD VL ME I G+ +TD L + + L + G+
Sbjct: 226 ------------LLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGV 273
Query: 378 YCSLRQLLEVGFFHADPHPGNLVALA----DGSLAYFDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ D D G++G + + L + L+ +
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAF 333
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F ++ +L+
Sbjct: 334 FKRDYRKVAQLHIDSGWVPADTQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTAR 393
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ PF+
Sbjct: 394 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFL 434
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL+ LQD++PP+ ++A++ IE Q
Sbjct: 56 RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQ 115
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG K+ +VFA +P+A+AS+ QV+ A L SGE V VKV RP + + D ++
Sbjct: 116 LGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V++ + + DE+D + E NA + + P
Sbjct: 176 RLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSP---------- 225
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI +TD L+ + + L + G+
Sbjct: 226 ------------LLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAYF--DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A S Y D G++G + + L + L+ +
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 434 VNRDSLGLANDFLSLGFIPEGF---DIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P D +A + + + F V+ +L+
Sbjct: 334 FKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTAR 393
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ PF+
Sbjct: 394 RFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL+ LQD++PP+ ++A++ IE Q
Sbjct: 56 RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQ 115
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG K+ +VFA +P+A+AS+ QV+ A L SGE V VKV RP + + D ++
Sbjct: 116 LGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V++ + + DE+D + E NA + + P
Sbjct: 176 RLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSP---------- 225
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI +TD L+ + + L + G+
Sbjct: 226 ------------LLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAYF--DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A S Y D G++G + + L + L+ +
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 434 VNRDSLGLANDFLSLGFIPEGF---DIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P D +A + + + F V+ +L+
Sbjct: 334 FKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTAR 393
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ PF+
Sbjct: 394 RFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL+ LQD++PP+ ++A++ IE Q
Sbjct: 56 RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQ 115
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG K+ +VFA +P+A+AS+ QV+ A L SGE V VKV RP + + D ++
Sbjct: 116 LGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V++ + + DE+D + E NA + + P
Sbjct: 176 RLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSP---------- 225
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI +TD L+ + + L + G+
Sbjct: 226 ------------LLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAYF--DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A S Y D G++G + + L + L+ +
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 434 VNRDSLGLANDFLSLGFIPEGF---DIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P D +A + + + F V+ +L+
Sbjct: 334 FKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTAR 393
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ PF+
Sbjct: 394 RFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL+ LQD++PP+ ++A++ IE Q
Sbjct: 56 RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQ 115
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG K+ +VFA +P+A+AS+ QV+ A L SGE V VKV RP + + D ++
Sbjct: 116 LGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V++ + + DE+D + E NA + + P
Sbjct: 176 RLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSP---------- 225
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI +TD L+ + + L + G+
Sbjct: 226 ------------LLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAYF--DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A S Y D G++G + + L + L+ +
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 434 VNRDSLGLANDFLSLGFIPEGF---DIQAVSDALQASFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P D +A + + + F V+ +L+
Sbjct: 334 FKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTAR 393
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ PF+
Sbjct: 394 RFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 190/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL LQD++PP+ + +M+ IE Q
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG K+SEVF+ P+A+AS+ QV+ A L +GE V VKV RPG+ + D ++
Sbjct: 115 LGKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFILA 174
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+RF+ + L + V + + ++DE+D + E NA + + P
Sbjct: 175 RAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSP---------- 224
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I G+++TD L + + L + G+
Sbjct: 225 ------------LLYVPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAY--FDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ + S Y D G++G + + L + L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 192/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R V FR L LGP +IK GQ LSTR D+LP EL LQD++PP+ +A++ IE Q
Sbjct: 55 RGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG ++ +VF+ KP+A+AS+ QV+ A L +GE V VKV RPG+ + D ++
Sbjct: 115 LGARICDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILA 174
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V + + ++DE+D + E NA Q + +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANAS------------QLRRNFEG 222
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
S + + VP++YWD VL ME I G+++TD GL + + L + G+
Sbjct: 223 S----------DLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLVALADGSLA----YFDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A D G++G + + L + L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ P++
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 192/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R V FR L LGP +IK GQ LSTR D+LP EL LQD++PP+ VA+ IE Q
Sbjct: 55 RGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG ++ +VF+ P+A+AS+ QV+ A L +GE V VKV RPG+ + D ++
Sbjct: 115 LGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILA 174
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V + + ++DE+D + E N+ Q + +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSS------------QLRRNFEG 222
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
S + + VP++YWD VL ME I G+++TD GL + + L + G+
Sbjct: 223 S----------DLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAY--FDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ + S Y D G++G + + L + L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L PD + ++ P++
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYL 433
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R V FR L LGP +IK GQ LSTR D+LP EL LQD++PP+ VA++ IE Q
Sbjct: 55 RGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG ++ +VF+ P+A+AS+ QV+ A L +GE V VKV RPG+ + D ++
Sbjct: 115 LGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILA 174
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+R + + L + V + + ++DE+D + E N+ Q + +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSS------------QLRRNFEG 222
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
S + + VP++YWD VL ME I G+++TD GL + + L + G+
Sbjct: 223 S----------DLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLVALADGSLA----YFDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ A D G++G + + L + L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L P+ + ++ P++
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 191/401 (47%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R L LGP +IK GQ LSTR D+LP EL LQD++PP+ + ++ IE Q
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQ 114
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLD-AVLFQMI 258
LG K+S+VF+ +P+A+AS+ QV+ A L +GE V VKV RPG+ + D A LF +
Sbjct: 115 LGKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFILA 174
Query: 259 GGQLKRFAKARKDLLV-AVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
K A AR V V++ + ++DE+D + E NA + + P
Sbjct: 175 RAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP---------- 224
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YWD VL ME I GI++TD L + + L + G+
Sbjct: 225 ------------LLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGV 272
Query: 378 YCSLRQLLEVGFFHADPHPGNLV--ALADGSLAY--FDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ + S Y D G++G + + L + L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P + A++ + + F V+ +L+
Sbjct: 333 FKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTAR 392
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L ++EG + L PD + ++ PF+
Sbjct: 393 RFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 186/401 (46%), Gaps = 31/401 (7%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R+ LGP ++K GQ LSTRPD++P EL+ LQD + P++ R +E+
Sbjct: 48 RGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVESS 107
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLDAVLFQMIG 259
LG V+EVFA + +P+A+AS+ QV+ A L G V +KV RPG+ + D L +
Sbjct: 108 LGASVAEVFASFNIEPLASASVAQVHTAVLKDGREVVIKVIRPGIDKVIAQDIALLLRVA 167
Query: 260 GQLKRFAKARKDL--LVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
++ K L + V + +FDE+D E N + + P
Sbjct: 168 RWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSP---------- 217
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ VP++YW+ T VL ME I GI +TD L + +KL + G+
Sbjct: 218 ------------LLYVPEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGV 265
Query: 378 YCSLRQLLEVGFFHADPHPGNL-VALADGSLAYF---DFGMMGDIPRHFRVGLIQVLVHY 433
Q+ E FFHAD HPGN+ VA S + D ++G + R + L + L+
Sbjct: 266 EIFFTQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAM 325
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQAVSDALQA---SFGDGTRQSQDFQGVMDQLYDVMY 490
RD +A + G++P ++ + A++ + + F V+ L+
Sbjct: 326 FRRDYRQVAELHVESGWVPSHVRVEELEAAVRTVCEPIFEKPLKEISFAQVLLNLFRTAR 385
Query: 491 EFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
F + P L+ + L ++EG + L PD + +++PF+
Sbjct: 386 RFEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWATAHPFL 426
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 191/408 (46%), Gaps = 49/408 (12%)
Query: 139 KRAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYA-TDVAMRSIE 197
K RK LGP +IK+GQ LSTRPD+LP Y +ELSKLQ+ +PP D+ E
Sbjct: 31 KSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFE 90
Query: 198 TQLGVKVSEVFADISPKPIAAASLGQVYKAHLHSGELVAVKVQRPGMPLSLTLD-AVLFQ 256
+L + F PI +AS+ QV+ A L G V VK+QRPG+ + D +++ +
Sbjct: 91 -ELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQRPGIAEMMKTDLSIIKK 149
Query: 257 MIGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKK 316
++ +F A D A++E+ E+D+I E N ++F L +
Sbjct: 150 LLNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKFKKLNEDVKF-------- 201
Query: 317 ASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEG 376
++ P L + ++ ME I GIK+ N +KL++EG
Sbjct: 202 --------------VRTPYTIDKLCTEKIIVMEKIVGIKID----------NLKKLLNEG 237
Query: 377 ----------LYCSLRQLLEVGFFHADPHPGNLVALADGSLAYFDFGMMGDIPRHFRVGL 426
+Q+ + GFFH DPHPGNL+ + + + Y DFG+MG I + ++ L
Sbjct: 238 YDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLL-IRENHICYIDFGIMGTISKSLKISL 296
Query: 427 IQVLVHYVNRDSLGLANDFLSLGFIPEGFDIQAVSDALQASFGD---GTRQSQDFQGVMD 483
++ D + + +S+G + ++ ++++ F + + ++ ++
Sbjct: 297 NDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKISVMLQ 356
Query: 484 QLYDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+++ + N LP + +++++ +EG + P+ +++ P+V
Sbjct: 357 EIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYV 404
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 186/403 (46%), Gaps = 34/403 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R +LGP +IK GQ LSTR D+LPP +EL+ LQD++PP+ A R IE
Sbjct: 53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEAS 112
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL-HSGELVAVKVQRPGMPLSLTLDAVLFQMI 258
LG + +F D P+A+AS+ QV+ A L +G + +KV RP + + D L Q +
Sbjct: 113 LGCTIETLFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQAL 172
Query: 259 GGQLKRFA--KARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKK 316
+ RF R + V E + + DE++ + E NA + ++ G +
Sbjct: 173 ARLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFT---------GSE 223
Query: 317 ASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEG 376
A + VP+++ + + VL ME I GI ++D L+ N + L + G
Sbjct: 224 A-------------LYVPEVFTEHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERG 270
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVALADGS----LAYFDFGMMGDIPRHFRVGLIQVLVH 432
+ Q+ FFHAD HPGN+ + D G++G + R + L + +
Sbjct: 271 VEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFLA 330
Query: 433 YVNRDSLGLANDFLSLGFIPEGFDIQ----AVSDALQASFGDGTRQSQDFQGVMDQLYDV 488
+ NRD +A + G++P + A+ L+ F + F V+ L++
Sbjct: 331 FFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPIF-EKPLSEISFGHVLLNLFNT 389
Query: 489 MYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L +EG + L P + +++ P++
Sbjct: 390 ARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 185/403 (45%), Gaps = 34/403 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R +LGP +IK GQ LSTR D+LPP +EL+ LQD++PP+ A IE
Sbjct: 53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEES 112
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHL-HSGELVAVKVQRPGMPLSLTLDAVLFQMI 258
LG V +F D P+A+AS+ QV+ L +G + +KV RP + + D L Q +
Sbjct: 113 LGCPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTL 172
Query: 259 GGQLKRFA--KARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKK 316
+ RF AR + V E + + DE++ + E NA + ++
Sbjct: 173 ARLVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFT------------ 220
Query: 317 ASVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEG 376
+ + VP+++ + + VL ME I GI ++D L+ N + L + G
Sbjct: 221 ----------GSDALYVPEVFTEHCREHVLVMERIYGIPVSDIPALEANGTNMKLLAERG 270
Query: 377 LYCSLRQLLEVGFFHADPHPGNLVAL---ADGSLAY-FDFGMMGDIPRHFRVGLIQVLVH 432
+ Q+ FFHAD HPGN+ D L D G++G + R + L + +
Sbjct: 271 VEVFFTQVFRDSFFHADMHPGNIFVSYEHPDNPLWIGIDCGIVGTLNREDKRYLAENFLA 330
Query: 433 YVNRDSLGLANDFLSLGFIPEGFDIQ----AVSDALQASFGDGTRQSQDFQGVMDQLYDV 488
+ NRD +A + G++P + A+ L+ F + F V+ L++
Sbjct: 331 FFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPIF-EKPLSEISFGHVLLNLFNT 389
Query: 489 MYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN ++ P L+ + L +EG + L P + +++ P++
Sbjct: 390 ARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
>sp|Q491V8|UBIB_BLOPB Probable ubiquinone biosynthesis protein UbiB OS=Blochmannia
pennsylvanicus (strain BPEN) GN=ubiB PE=3 SV=1
Length = 546
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 189/398 (47%), Gaps = 32/398 (8%)
Query: 144 FRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVK 203
FR L LGP +IK GQ LSTR D+ P +LS LQD++ P+ +A IE +G
Sbjct: 57 FRLALQELGPIWIKFGQMLSTRRDIFPDSVADQLSILQDRVAPFDGIIAKMCIERAIGNS 116
Query: 204 VSEVFADISPKPIAAASLGQVYKAHL-HSGELVAVKVQRPGMPLSLTLDAVLFQMIGGQL 262
+ F D P+A+AS+ QV+ A L + + + +K+ RPG+ + +D L + +
Sbjct: 117 LETWFKDFQEIPLASASISQVHSARLKKNNKDIVIKIIRPGLLPVIKIDICLMYRLAKWI 176
Query: 263 KRF-AKARK-DLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVA 320
+F + RK V+E + +F+E++ + E N + +++ KK+ +
Sbjct: 177 CKFLPEGRKFKFSEVVSEYEKTLFNELNLLKETANTIQL-----------RRNFKKSQI- 224
Query: 321 NNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCS 380
+ +PK+Y D + V+ ME I GI + + + LK+ N + L + G+
Sbjct: 225 ----------LYIPKVYVDFCSENVMVMERIYGIPVYNLVALKKQKTNMKLLAERGIEIF 274
Query: 381 LRQLLEVGFFHADPHPGNLVALAD--GSLAYF--DFGMMGDIPRHFRVGLIQVLVHYVNR 436
Q+ FFH D HPGN+ G+ Y D G++G + + + L + + N
Sbjct: 275 FTQVFRDSFFHGDMHPGNIFISYKHPGNPKYISVDCGIVGSLNKKDKYYLAANFIAFFNH 334
Query: 437 DSLGLANDFLSLGFIPEGFDIQAVSDALQASFGDGTRQSQD---FQGVMDQLYDVMYEFN 493
D +A L G+IP +I+ A++ F Q + F ++ L++ FN
Sbjct: 335 DYRKIAELHLDSGWIPLDTNIEDFECAMRTVFEPIFEQPLEKIPFSKILLYLFNTARYFN 394
Query: 494 FSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
+ P L+ + L +EG + L P+ + +S+ PF+
Sbjct: 395 MEIQPQLILLQKTLLYIEGIVRQLYPNLNLWKSAQPFL 432
>sp|A8H968|UBIB_SHEPA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3
SV=1
Length = 549
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 185/390 (47%), Gaps = 28/390 (7%)
Query: 150 SLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQLGVKVSEVFA 209
LGP YIK GQ LSTR D+L + +EL+ LQD++PP+ + +A SIE +L + F
Sbjct: 63 ELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEKELNAPIERYFN 122
Query: 210 DISPKPIAAASLGQVYKAHLHS-GELVAVKVQRPGMPLSLTLDAVLFQMIGGQLKRFAKA 268
D P+A+AS+ QV+ A L S G V +KV RP + + D +L L+R A
Sbjct: 123 DFDDTPLASASISQVHTATLKSNGAAVVLKVLRPDVEKKVHADLLLMSQAADFLERLLGA 182
Query: 269 RKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKASVANNVKTNKH 328
L A + ++ +EG+ + +L +I + NN +
Sbjct: 183 NNRLRPA------EVVEDYRTTIEGELNLKLEALNAI------------KLRNNFIDS-- 222
Query: 329 NCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGLYCSLRQLLEVG 388
N + +P +Y +L ++ ME IDGI ++D++ L+ N + L + G+ Q+
Sbjct: 223 NALYIPYMYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDN 282
Query: 389 FFHADPHPGNLVALADGSLAYF----DFGMMGDIPRHFRVGLIQVLVHYVNRDSLGLAND 444
FFHAD HPGN+ + F D G+MG + + L + + + NRD +A
Sbjct: 283 FFHADMHPGNVFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQL 342
Query: 445 FLSLGFIPEGFDIQAVSDALQASFGDGTRQSQD---FQGVMDQLYDVMYEFNFSLPPDYA 501
++ G++ D+ A A++ + D F V+ +L+ F+ + P
Sbjct: 343 YIESGWVSADTDVGAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLV 402
Query: 502 LVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
L+ + L +EG + L P + +++ PF+
Sbjct: 403 LLEKTLLYIEGLGRQLYPQLDLWQTAKPFL 432
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 181/402 (45%), Gaps = 33/402 (8%)
Query: 140 RAVTFRKTLVSLGPFYIKLGQALSTRPDVLPPVYCQELSKLQDQIPPYATDVAMRSIETQ 199
R R LGP +IK GQ LSTR D+LPP +EL+ LQD++P + +A IE
Sbjct: 53 RGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQA 112
Query: 200 LGVKVSEVFADISPKPIAAASLGQVYKAHLHSGEL-VAVKVQRPGMPLSLTLDAVLFQMI 258
LG + +FAD +P+A+AS+ QV+ A L + +KV RP + + D L ++
Sbjct: 113 LGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLC 172
Query: 259 GGQLK-RFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYSICPYDQQKHGKKA 317
+ R + + E R + DE++ + E NA
Sbjct: 173 AKIVAFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANA--------------------I 212
Query: 318 SVANNVKTNKHNCIKVPKIYWDLTCKCVLTMEWIDGIKLTDEIGLKRASLNRRKLIDEGL 377
+ N + + H + VP +Y D + VL ME I GI ++D L+ + + L + G+
Sbjct: 213 QLRRNFENSSH--LYVPLVYSDYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGV 270
Query: 378 YCSLRQLLEVGFFHADPHPGNLVA----LADGSLAYFDFGMMGDIPRHFRVGLIQVLVHY 433
Q+ FFHAD HPGN+ D D G++G + R + L + + +
Sbjct: 271 EVFFTQVFRDSFFHADMHPGNVFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAF 330
Query: 434 VNRDSLGLANDFLSLGFIPEGFDIQ----AVSDALQASFGDGTRQSQDFQGVMDQLYDVM 489
NRD +A + G++P ++ A+ L+ F + F V+ L++
Sbjct: 331 FNRDYRKVAELHVQSGWVPPDTKVEEFESALRTVLEPIFAKPLAEI-SFGQVLLNLFNTA 389
Query: 490 YEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESSYPFV 531
FN + P L+ + L +EG + L P + +++ PF+
Sbjct: 390 RRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQTAKPFL 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,299,845
Number of Sequences: 539616
Number of extensions: 10872653
Number of successful extensions: 35840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 34992
Number of HSP's gapped (non-prelim): 287
length of query: 739
length of database: 191,569,459
effective HSP length: 125
effective length of query: 614
effective length of database: 124,117,459
effective search space: 76208119826
effective search space used: 76208119826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)