BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044987
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P00505|AATM_HUMAN Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2
           PE=1 SV=3
          Length = 430

 Score = 35.0 bits (79), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 96  YKKKKDLPGSEMGGFTRILHSGNPDELMDEIPTMVVDPLPA-----GLDRGYIVLNRPWA 150
           Y K   L G  +G FT +    +  + ++    +++ P+ +     G      +LN P  
Sbjct: 277 YAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDL 336

Query: 151 FVQWLEKAKIDEEYILMAEPDHIFVRPLPNLSHG--------GMPAGYPFFYIKPEQNEK 202
             QWL++ K+  + I+      +        +H         GM   + F  +KPEQ E+
Sbjct: 337 RKQWLQEVKVMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGM---FCFTGLKPEQVER 393

Query: 203 IIRKF--YPEENGPVT 216
           +I++F  Y  ++G ++
Sbjct: 394 LIKEFSIYMTKDGRIS 409


>sp|Q8RLW0|SERC_XENNA Phosphoserine aminotransferase OS=Xenorhabdus nematophila (strain
           ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
           GN=serC PE=3 SV=1
          Length = 362

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 213 GPVTNVDPIGNSPVIIRKDLL---EKIAPTWMNVSLKMKDDP--ETDKTFGWVLEMYAYA 267
           G   N+ P G + VIIR+DLL    K  P+ ++ ++++K D    T  TF W L    + 
Sbjct: 195 GAQKNIGPAGITVVIIREDLLGKAHKHIPSILDYTVQVKADSMYNTPPTFAWYLSGMVFK 254

Query: 268 VASALHGVQHILRNDF 283
                 G+Q I + + 
Sbjct: 255 WLKEQGGLQEISKRNL 270


>sp|P48239|GTO1_YEAST Glutathione S-transferase omega-like 1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=GTO1 PE=1 SV=1
          Length = 356

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 43  VSDDSNGGVFFDPVVEMPENVKKLKNSKTPYHVALTATDAPYSKWQCRIMYYWYKKKKDL 102
           V++DS   +F D   +  EN+ +L  S+  Y   L     P +K+   ++  W  K + +
Sbjct: 101 VNNDS-ARLFVDGAFDPVENISRL--SELYY---LNDPKYPGTKFTVPVL--WDSKTRKI 152

Query: 103 PGSEMGGFTRILHSGNPDELMDEIPTMVVDPLPAGL 138
             +E G   RIL+SG  DE +    T V+D +P  L
Sbjct: 153 VNNESGDIIRILNSGVFDEFIQSEETNVIDLVPHDL 188


>sp|P57881|SERC_PASMU Phosphoserine aminotransferase OS=Pasteurella multocida (strain
           Pm70) GN=serC PE=3 SV=1
          Length = 360

 Score = 33.5 bits (75), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 213 GPVTNVDPIGNSPVIIRKDLL---EKIAPTWMNVSLKMKDDP--ETDKTFGWVLEMYAYA 267
           G   N+ P G + VI+R+DL+    +  PT  N  ++ K D    T  TF W L    + 
Sbjct: 193 GAQKNLGPAGITLVIVREDLIGHARQTTPTIWNYEIQSKADSMINTPPTFAWYLCALVFK 252

Query: 268 VASALHGVQHI-LRNDFMLQPPWD 290
              +L G++ I  RN    Q  +D
Sbjct: 253 HLLSLGGIEEIEKRNQAKAQLLYD 276


>sp|B4ET24|SERC_PROMH Phosphoserine aminotransferase OS=Proteus mirabilis (strain HI4320)
           GN=serC PE=3 SV=1
          Length = 362

 Score = 32.0 bits (71), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 213 GPVTNVDPIGNSPVIIRKDLLEKI---APTWMNVSLKMKDDP--ETDKTFGWVLEMYAYA 267
           G   N+ P G + VIIR+DLL K     P+  + ++  ++D    T  TF W L    + 
Sbjct: 195 GAQKNIGPAGLTLVIIREDLLGKARKETPSVFDYTVLAENDSMFNTPPTFAWYLSGMVFK 254

Query: 268 VASALHGVQHILRNDF 283
                 G+Q I + ++
Sbjct: 255 WLKEQGGLQEIAKRNY 270


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,485,372
Number of Sequences: 539616
Number of extensions: 7451691
Number of successful extensions: 16101
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16095
Number of HSP's gapped (non-prelim): 14
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)