Query 044987
Match_columns 368
No_of_seqs 110 out of 127
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04244 DPRP: Deoxyribodipyri 39.4 31 0.00067 33.1 3.3 55 304-363 159-216 (224)
2 PF05637 Glyco_transf_34: gala 38.9 35 0.00076 32.7 3.6 38 142-180 58-95 (239)
3 PF03935 SKN1: Beta-glucan syn 34.2 48 0.001 35.8 4.1 87 9-97 44-152 (504)
4 PF01501 Glyco_transf_8: Glyco 23.8 65 0.0014 28.8 2.6 32 160-191 97-131 (250)
5 cd06437 CESA_CaSu_A2 Cellulose 22.8 77 0.0017 28.5 2.9 27 147-175 75-101 (232)
6 cd04191 Glucan_BSP_ModH Glucan 20.6 92 0.002 29.8 3.0 30 147-176 81-110 (254)
7 PRK05454 glucosyltransferase M 19.3 93 0.002 34.7 3.0 30 147-176 206-235 (691)
8 cd06434 GT2_HAS Hyaluronan syn 18.3 1.3E+02 0.0029 26.6 3.4 28 147-176 65-92 (235)
9 PRK11498 bcsA cellulose syntha 17.8 95 0.0021 35.5 2.8 27 147-175 327-353 (852)
10 PRK14583 hmsR N-glycosyltransf 17.0 1.8E+02 0.0038 29.9 4.3 26 147-174 143-168 (444)
No 1
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=39.38 E-value=31 Score=33.06 Aligned_cols=55 Identities=24% Similarity=0.607 Sum_probs=23.2
Q ss_pred ccccccCCccccCcccceeeecCCCCCCCCCCCCCCCCCC--CchHHH-HHHHHHHHHhhcCC
Q 044987 304 GCDYNLKGELTYGKIGEWRFDKRSYLRGPPPRNLSLPPPG--VPESVA-TLVKMVNEATANIP 363 (368)
Q Consensus 304 G~~y~~~g~~~~gkig~W~FDKr~~~~~~pp~~l~~pP~~--~~~~~~-~lv~~~nea~~~lp 363 (368)
|..-+.+|+-. .|.|+||.-. .+++|++.+.|++- -+.+.+ ..++.|++.-.+-|
T Consensus 159 ~ILmd~~g~P~---GGkWnfD~eN--Rk~~p~~~~~P~~~~~~~d~it~~v~~~V~~~f~~~~ 216 (224)
T PF04244_consen 159 GILMDEDGKPV---GGKWNFDAEN--RKKLPKGIPIPEPPRFEPDAITQEVIELVEKHFPDHP 216 (224)
T ss_dssp TTTE-ETTEEG---GGSS--GGGS---------TTS---------HHHHHHHHHHHHH-TTSS
T ss_pred CccccCCCCcC---CCcCCCChhh--ccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHCCCCC
Confidence 55555555543 3679999754 34445554444332 244444 58888888776655
No 2
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=38.88 E-value=35 Score=32.66 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=24.6
Q ss_pred CcccCchhHHHHHHHhCCCCccEEEEecCCeeeecCCCC
Q 044987 142 YIVLNRPWAFVQWLEKAKIDEEYILMAEPDHIFVRPLPN 180 (368)
Q Consensus 142 Y~v~NKP~A~~qWL~~a~i~e~~VlmlDpD~I~~rPl~~ 180 (368)
...-.|+.++++-|++-+ +.+||+-+|+|-||+.|=..
T Consensus 58 ~~~W~K~~~lr~~m~~~P-~~~wv~~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKYP-EAEWVWWLDSDALIMNPDFS 95 (239)
T ss_dssp HHHHTHHHHHHHHHHH-T-T-SEEEEE-TTEEE------
T ss_pred ChhhHHHHHHHHHHHhCC-CCCEEEEEcCCeEEEecccc
Confidence 445779999999997643 68999999999999996544
No 3
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=34.21 E-value=48 Score=35.76 Aligned_cols=87 Identities=13% Similarity=0.309 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhhhhhhhccCcC------------cccCCCCCCCccCCccccCChhhhh-cCCCCCCeEE
Q 044987 9 RASPILMVLFTFGFAFGTYNLVTMVIRNRSVR------------NWVSDDSNGGVFFDPVVEMPENVKK-LKNSKTPYHV 75 (368)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~ 75 (368)
-...|++|+++|.++|+.|=+|+.+....... ..+.-........||- -|++... ...+++.++.
T Consensus 44 Nlg~LilL~lGLL~LFigyPIlt~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~liDpd--TP~~a~t~~~~~g~~~~L 121 (504)
T PF03935_consen 44 NLGGLILLILGLLMLFIGYPILTFFGKTNHSTSGGNLGGINASGQYPLLSNIRTGLIDPD--TPESAYTRTSSDGRTYKL 121 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccccccccccccccccccCcccccccccccCCC--CCHHHhheeCCCCCEeeE
Confidence 34455666667778999999998876444111 1111100011234554 2343322 2226899999
Q ss_pred EEeec----CCCC-----cchhhhhhhHHHH
Q 044987 76 ALTAT----DAPY-----SKWQCRIMYYWYK 97 (368)
Q Consensus 76 vfSt~----cs~Y-----~~WQsrimy~s~k 97 (368)
|||-+ +-.+ +-|++.-++|+.-
T Consensus 122 vfSDEFn~~gRtF~~gdDp~w~a~~~~y~~t 152 (504)
T PF03935_consen 122 VFSDEFNTDGRTFYPGDDPFWTAVDLHYWAT 152 (504)
T ss_pred EEehhhCCCCCccCCCCccceecccccccCC
Confidence 99854 2222 5688888777643
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=23.79 E-value=65 Score=28.84 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred CCccEEEEecCCeeeecCCCCC---CCCCCCCccc
Q 044987 160 IDEEYILMAEPDHIFVRPLPNL---SHGGMPAGYP 191 (368)
Q Consensus 160 i~e~~VlmlDpD~I~~rPl~~~---a~~g~p~a~~ 191 (368)
.+.+-||.+|+|+|+++++..+ ..+|.+.+..
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~ 131 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAV 131 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEE
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhcccc
Confidence 4669999999999999998732 2335554443
No 5
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=22.83 E-value=77 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeee
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIFV 175 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 175 (368)
|+.|+..-++++ +.+||+++|+|.++-
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~~ 101 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVPP 101 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCCC
Confidence 677777777776 679999999999863
No 6
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.59 E-value=92 Score=29.85 Aligned_cols=30 Identities=7% Similarity=0.241 Sum_probs=23.1
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeeec
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIFVR 176 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~r 176 (368)
|-.++...+.+..-+.+||+++|+|.+.-.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p 110 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSG 110 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCH
Confidence 566777777765567799999999998643
No 7
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=19.29 E-value=93 Score=34.68 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=25.9
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeeec
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIFVR 176 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~r 176 (368)
|-+.+.+|++...-+.|||+++|+|.++-+
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~~ 235 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMSG 235 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCCH
Confidence 677899999987778899999999999743
No 8
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=18.28 E-value=1.3e+02 Score=26.62 Aligned_cols=28 Identities=7% Similarity=0.313 Sum_probs=22.7
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeeec
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIFVR 176 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~r 176 (368)
|..|+..-++++ +.+||+++|+|-++-.
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~~ 92 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWPP 92 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeCh
Confidence 567777777776 7899999999999843
No 9
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=17.80 E-value=95 Score=35.54 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.1
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeee
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIFV 175 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 175 (368)
|.+++.+.|+++ +.|||+++|+|++.-
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip~ 353 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVPT 353 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCCC
Confidence 678888999886 679999999999953
No 10
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=17.04 E-value=1.8e+02 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.0
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeee
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIF 174 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~ 174 (368)
|+.|+..=++++ +.|||+++|+|.++
T Consensus 143 ka~AlN~gl~~a--~~d~iv~lDAD~~~ 168 (444)
T PRK14583 143 KAIALRMGAAAA--RSEYLVCIDGDALL 168 (444)
T ss_pred HHHHHHHHHHhC--CCCEEEEECCCCCc
Confidence 778888877775 57999999999985
Done!