Query 044987
Match_columns 368
No_of_seqs 110 out of 127
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulb_A Target of rapamycin com 14.3 84 0.0029 26.7 2.2 38 162-199 28-68 (121)
2 3ffy_A Putative tetrapyrrole ( 13.3 1.3E+02 0.0046 24.1 3.1 43 126-170 70-112 (115)
3 2l9a_X LAK160-P12; cationic, p 12.5 37 0.0013 21.2 -0.4 17 233-249 7-23 (26)
4 3zxs_A Cryptochrome B, rscryb; 11.5 2.8E+02 0.0094 28.6 5.5 79 274-358 131-224 (522)
5 1r4g_A RNA polymerase alpha su 10.2 1.3E+02 0.0044 22.0 1.8 19 345-363 34-52 (53)
6 1ll2_A Glycogenin-1; protein-s 8.7 1.8E+02 0.0062 27.6 2.8 103 72-181 4-114 (333)
7 2ium_A Avian adenovirus CELO l 8.7 1.3E+02 0.0044 28.0 1.6 23 109-133 38-60 (248)
8 3lk4_B F-actin-capping protein 8.5 2.5E+02 0.0086 26.9 3.6 55 288-361 50-106 (277)
9 1g9r_A Glycosyl transferase; a 8.0 1.7E+02 0.0059 26.9 2.2 20 161-180 95-114 (311)
10 4hg6_A Cellulose synthase subu 7.8 2.4E+02 0.0082 29.9 3.5 26 147-174 226-251 (802)
No 1
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=14.29 E-value=84 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=29.6
Q ss_pred ccEEEEecCCeeeecCCCC---CCCCCCCCcccceeeccCC
Q 044987 162 EEYILMAEPDHIFVRPLPN---LSHGGMPAGYPFFYIKPEQ 199 (368)
Q Consensus 162 e~~VlmlDpD~I~~rPl~~---~a~~g~p~a~~f~Yi~p~~ 199 (368)
.+=+|.||.|+|-+-|-.. +-..|...++.|.-|++|+
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 5678999999999999853 2345788899999999986
No 2
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=13.26 E-value=1.3e+02 Score=24.13 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=29.1
Q ss_pred CCceEeCCCCCCCCCCCcccCchhHHHHHHHhCCCCccEEEEecC
Q 044987 126 IPTMVVDPLPAGLDRGYIVLNRPWAFVQWLEKAKIDEEYILMAEP 170 (368)
Q Consensus 126 iPTfvvdpl~~~~dd~Y~v~NKP~A~~qWL~~a~i~e~~VlmlDp 170 (368)
-|-+++.-++. ...-...-.-.-+.+|++...++.++||++++
T Consensus 70 ~~v~v~relTk--~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 70 RQVSVSREISK--IHEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp CEEEEEEESSS--SCEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred CEEEeeeccCC--CceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 34445444432 12334555677889999999999999999985
No 3
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=12.48 E-value=37 Score=21.25 Aligned_cols=17 Identities=47% Similarity=0.937 Sum_probs=13.8
Q ss_pred HHHHhHHHHHhhhhhcc
Q 044987 233 LEKIAPTWMNVSLKMKD 249 (368)
Q Consensus 233 L~riAP~W~~~t~~vr~ 249 (368)
|.++||+|-.++.+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56789999998887764
No 4
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=11.51 E-value=2.8e+02 Score=28.65 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=39.6
Q ss_pred CCccccccc-cccCCCCccc----CCCceEEEeecc-------cccccCCccccCcccceeeecCCCCCCCCCCCCCCCC
Q 044987 274 GVQHILRND-FMLQPPWDLE----VGERFIIHYTYG-------CDYNLKGELTYGKIGEWRFDKRSYLRGPPPRNLSLPP 341 (368)
Q Consensus 274 gV~H~l~~~-lMiqPp~d~~----~g~~~iiHYtyG-------~~y~~~g~~~~gkig~W~FDKr~~~~~~pp~~l~~pP 341 (368)
||+-.+..+ .-+.+|.+.. .|+++.+-+=|- ..- .+|+-. .|.|.||+-. ..++|+.++.|+
T Consensus 131 gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me~FYR~~Rkr~~iLm-~~~~P~---GG~WnfD~~N--Rk~~p~~~~~p~ 204 (522)
T 3zxs_A 131 PLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWFYREMRRRTGLLM-EGDEPA---GGKWNFDTEN--RKPAAPDLLRPR 204 (522)
T ss_dssp SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHHHHHHHHHHHHTTTE-ETTEEG---GGSSCCGGGS--CCCCCCCTTCCC
T ss_pred CCcEEEeCCCCcccCHHHHHHhhcCCCCeEeeHHHHHHHHHhCcCC-CCCCCC---CCccCccccc--cccCCCCCCCCC
Confidence 888776665 3567777664 356666621121 111 122221 3679999753 233444444443
Q ss_pred C--CCchHHH-HHHHHHHHH
Q 044987 342 P--GVPESVA-TLVKMVNEA 358 (368)
Q Consensus 342 ~--~~~~~~~-~lv~~~nea 358 (368)
+ -.+.+++ ..++.|.+.
T Consensus 205 ~~~~~~d~~~~~v~~~v~~~ 224 (522)
T 3zxs_A 205 PLRFEPDAEVRAVLDLVEAR 224 (522)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHh
Confidence 2 2344444 356666544
No 5
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=10.22 E-value=1.3e+02 Score=21.99 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 044987 345 PESVATLVKMVNEATANIP 363 (368)
Q Consensus 345 ~~~~~~lv~~~nea~~~lp 363 (368)
.|+|-.+.+|+||-+..|-
T Consensus 34 dqEV~~~Memf~EDi~slt 52 (53)
T 1r4g_A 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5677789999999988764
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=8.74 E-value=1.8e+02 Score=27.57 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred CeEEEEeecCCCCcchhhhhhhHHHHhhhcCCCCCCCCceEEEecCCCcc----cccCCCce-EeCCCCCCCCCCCcccC
Q 044987 72 PYHVALTATDAPYSKWQCRIMYYWYKKKKDLPGSEMGGFTRILHSGNPDE----LMDEIPTM-VVDPLPAGLDRGYIVLN 146 (368)
Q Consensus 72 ~~H~vfSt~cs~Y~~WQsrimy~s~kk~~~~~ggq~G~fTRILhsg~~D~----LmdeiPTf-vvdpl~~~~dd~Y~v~N 146 (368)
..++++++|. .|- =++.++.+|.++.. ..-.+.=|.+.+-+++ |...-.++ .++++..........++
T Consensus 4 ~a~vt~~~d~-~Yl-~~a~vl~~SL~~~~-----s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTLTTND-AYA-KGALVLGSSLKQHR-----TSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEEESSH-HHH-HHHHHHHHHHHHTT-----CCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHH
T ss_pred eEEEEEEeCH-HHH-HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhccccc
Confidence 4566666554 454 47888888888763 1112221332222222 21111222 23333322111111123
Q ss_pred chhHHHHHHHhC--C-CCccEEEEecCCeeeecCCCCC
Q 044987 147 RPWAFVQWLEKA--K-IDEEYILMAEPDHIFVRPLPNL 181 (368)
Q Consensus 147 KP~A~~qWL~~a--~-i~e~~VlmlDpD~I~~rPl~~~ 181 (368)
||.--.-|.+-. . .+-+-||-||+|+|+++++..+
T Consensus 77 ~~~~~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp CGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGG
T ss_pred ccchHHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHH
Confidence 443222222221 2 3558899999999999998653
No 7
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric proteins, viral fibres, beta-sandwich, fiber protein, viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Probab=8.68 E-value=1.3e+02 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=15.8
Q ss_pred CceEEEecCCCcccccCCCceEeCC
Q 044987 109 GFTRILHSGNPDELMDEIPTMVVDP 133 (368)
Q Consensus 109 ~fTRILhsg~~D~LmdeiPTfvvdp 133 (368)
+.|||.||| |.|.|.-.-|-.-|
T Consensus 38 p~~~~~~~g--~nl~~sy~ifas~p 60 (248)
T 2ium_A 38 PEVATYHCG--DNLLESYDIFASLP 60 (248)
T ss_dssp CCEEEEEEE--CTTCCCCCEEEEET
T ss_pred ceeEEEeec--cchhhhHHHHhhCc
Confidence 469999987 67777655555433
No 8
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=8.48 E-value=2.5e+02 Score=26.87 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=31.2
Q ss_pred CCcccCCCceEEEeecccccccCCccccCcccceeeecCCCCCCCCCCCC-CCCCCCC-chHHHHHHHHHHHHhhc
Q 044987 288 PWDLEVGERFIIHYTYGCDYNLKGELTYGKIGEWRFDKRSYLRGPPPRNL-SLPPPGV-PESVATLVKMVNEATAN 361 (368)
Q Consensus 288 p~d~~~g~~~iiHYtyG~~y~~~g~~~~gkig~W~FDKr~~~~~~pp~~l-~~pP~~~-~~~~~~lv~~~nea~~~ 361 (368)
-.|.+.|..|++ ||||.+|. +|++.+--+=. |++...+ ++.+.+|=-..|+|.+.
T Consensus 50 ~~d~~~~k~yL~-----CDYNRDgD--------------SYRSPwSNkY~Ppl~dg~~PS~~LRkLEi~aN~aFd~ 106 (277)
T 3lk4_B 50 ARDKVVGKDYLL-----CDYNRDGD--------------SYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQ 106 (277)
T ss_dssp EEETTTTEEEEE-----CGGGEETT--------------EEECTTTCCEESCCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred eEccccCCeeEe-----ecccCCCc--------------cccCCCcCCcCCCCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 457788888876 99998664 33332111101 1111222 55666676677998753
No 9
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=7.97 E-value=1.7e+02 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.5
Q ss_pred CccEEEEecCCeeeecCCCC
Q 044987 161 DEEYILMAEPDHIFVRPLPN 180 (368)
Q Consensus 161 ~e~~VlmlDpD~I~~rPl~~ 180 (368)
+-+-||-+|+|+|+++.+..
T Consensus 95 ~~~kvlyLD~D~iv~~di~e 114 (311)
T 1g9r_A 95 DCDKVLYLDIDVLVRDSLTP 114 (311)
T ss_dssp SCSCEEEECSSEEECSCCHH
T ss_pred hcCEEEEEcCCeEeccCHHH
Confidence 45889999999999999864
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=7.78 E-value=2.4e+02 Score=29.85 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.4
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeee
Q 044987 147 RPWAFVQWLEKAKIDEEYILMAEPDHIF 174 (368)
Q Consensus 147 KP~A~~qWL~~a~i~e~~VlmlDpD~I~ 174 (368)
|..|+.+-++++ +.|||+++|+|.++
T Consensus 226 Ka~alN~gl~~a--~gd~Il~lDaD~~~ 251 (802)
T 4hg6_A 226 KAGNMSAALERL--KGELVVVFDADHVP 251 (802)
T ss_dssp HHHHHHHHHHHC--CCSEEEECCTTEEE
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 677888888887 67999999999987
Done!