Query 044987
Match_columns 368
No_of_seqs 110 out of 127
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 15:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 17.3 34 0.0025 28.3 2.8 22 160-181 93-114 (263)
2 d1ga8a_ c.68.1.4 (A:) Galactos 13.8 38 0.0027 28.3 2.1 80 161-246 95-179 (282)
3 d1omza_ c.68.1.15 (A:) Alpha-1 11.5 57 0.0042 24.5 2.4 15 160-174 80-94 (265)
4 d1r4ga_ a.8.5.1 (A:) RNA polym 10.2 60 0.0044 22.0 1.8 19 345-363 34-52 (53)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 9.2 94 0.0069 19.6 2.3 14 14-27 21-34 (37)
6 d1o7qa_ c.68.1.9 (A:) alpha-1, 9.0 62 0.0045 28.8 1.9 21 161-181 136-156 (287)
7 d1lzia_ c.68.1.9 (A:) Glycosyl 8.8 64 0.0046 28.7 1.9 21 161-181 141-161 (283)
8 d1yfua1 b.82.1.20 (A:1-174) 3- 8.7 76 0.0056 26.4 2.3 15 144-158 3-17 (174)
9 d1z8ua1 a.7.11.1 (A:2-91) Alph 8.3 71 0.0051 23.8 1.6 19 227-245 30-48 (90)
10 d1vioa1 d.265.1.3 (A:58-231) R 7.8 28 0.0021 27.7 -1.0 14 139-152 2-15 (174)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=17.25 E-value=34 Score=28.31 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=18.9
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 044987 160 IDEEYILMAEPDHIFVRPLPNL 181 (368)
Q Consensus 160 i~e~~VlmlDpD~I~~rPl~~~ 181 (368)
.+.|-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 4568899999999999999754
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=13.84 E-value=38 Score=28.32 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=40.5
Q ss_pred CccEEEEecCCeeeecCCCCC---CCCCCCCcccceeeccCCcHHHHHhhccCCCCCCcccCCCCCcceEEeHHHHHH--
Q 044987 161 DEEYILMAEPDHIFVRPLPNL---SHGGMPAGYPFFYIKPEQNEKIIRKFYPEENGPVTNVDPIGNSPVIIRKDLLEK-- 235 (368)
Q Consensus 161 ~e~~VlmlDpD~I~~rPl~~~---a~~g~p~a~~f~Yi~p~~~e~ilrk~~pe~~gp~~~~d~vGgsP~im~~dDL~r-- 235 (368)
+-+-||-||+|+|+++++..+ ..++...|+--.+..+.... ...++ .- ...+...-.| .+++..+.+++
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~-~~~~~-~~---~~~~~yfNsG-Vml~n~~~~r~~~ 168 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEG-YKQKI-GM---ADGEYYFNAG-VLLINLKKWRRHD 168 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTT-HHHHT-TC---CTTSCCEEEE-EEEECHHHHTTSC
T ss_pred ccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhh-hHHHh-CC---CCCCceeecc-eeeechhhhhhhh
Confidence 346799999999999998643 33444444433332222211 11111 00 0011222233 67887777764
Q ss_pred HhHHHHHhhhh
Q 044987 236 IAPTWMNVSLK 246 (368)
Q Consensus 236 iAP~W~~~t~~ 246 (368)
+...+.++..+
T Consensus 169 ~~~~~~~~~~~ 179 (282)
T d1ga8a_ 169 IFKMSSEWVEQ 179 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555443
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.45 E-value=57 Score=24.45 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=13.4
Q ss_pred CCccEEEEecCCeee
Q 044987 160 IDEEYILMAEPDHIF 174 (368)
Q Consensus 160 i~e~~VlmlDpD~I~ 174 (368)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 478999999999887
No 4
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=10.21 E-value=60 Score=21.99 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 044987 345 PESVATLVKMVNEATANIP 363 (368)
Q Consensus 345 ~~~~~~lv~~~nea~~~lp 363 (368)
.|+|-.+.+|+||-+.+|-
T Consensus 34 d~EV~evMdlf~EDi~slt 52 (53)
T d1r4ga_ 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5677789999999998764
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.22 E-value=94 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.795 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 044987 14 LMVLFTFGFAFGTY 27 (368)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (368)
+|++.++++.|..|
T Consensus 21 lLlifvl~vLFssY 34 (37)
T d2axtl1 21 LLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556677777776
No 6
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.99 E-value=62 Score=28.82 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=18.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 044987 161 DEEYILMAEPDHIFVRPLPNL 181 (368)
Q Consensus 161 ~e~~VlmlDpD~I~~rPl~~~ 181 (368)
+.||++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999998764
No 7
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.82 E-value=64 Score=28.69 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.7
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 044987 161 DEEYILMAEPDHIFVRPLPNL 181 (368)
Q Consensus 161 ~e~~VlmlDpD~I~~rPl~~~ 181 (368)
+.||++-+|+||+|..++...
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E 161 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVE 161 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCEEEEeecceEEecccccE
Confidence 469999999999999999764
No 8
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=8.74 E-value=76 Score=26.37 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.5
Q ss_pred ccCchhHHHHHHHhC
Q 044987 144 VLNRPWAFVQWLEKA 158 (368)
Q Consensus 144 v~NKP~A~~qWL~~a 158 (368)
.+.||+-|.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999986
No 9
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=71 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.573 Sum_probs=16.8
Q ss_pred EEeHHHHHHHhHHHHHhhh
Q 044987 227 IIRKDLLEKIAPTWMNVSL 245 (368)
Q Consensus 227 im~~dDL~riAP~W~~~t~ 245 (368)
+|.-+||.-|..+|.++-.
T Consensus 30 ~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 30 LVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999644
No 10
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=7.82 E-value=28 Score=27.69 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred CCCCcccCchhHHH
Q 044987 139 DRGYIVLNRPWAFV 152 (368)
Q Consensus 139 dd~Y~v~NKP~A~~ 152 (368)
++.|.++|||.++.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46899999999974
Done!