BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044988
         (538 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 51/180 (28%)

Query: 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR 287
           C++ G   +AL L++E RR  V L Q      L  C                        
Sbjct: 36  CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC------------------------ 71

Query: 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFL 347
                SL  A      + G +   + +F++M     V   +  T  A+   A+       
Sbjct: 72  -----SLAEAATESSPNPG-LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK------- 118

Query: 348 GVLSACSHGGFVDEGRQFFECMNQ--NWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNM 405
                       D+    F+ + Q   +GI+PR+  YG  +  F R G  D+A+ +  +M
Sbjct: 119 ------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,129,137
Number of Sequences: 62578
Number of extensions: 579142
Number of successful extensions: 1055
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 10
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)