Query 044988
Match_columns 538
No_of_seqs 553 out of 3304
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.3E-78 1.6E-82 633.3 59.1 515 12-537 182-781 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.4E-77 1.4E-81 611.7 56.3 513 13-538 83-619 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 6.9E-66 1.5E-70 542.6 48.8 492 12-530 81-658 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1E-62 2.2E-67 508.6 50.6 493 14-530 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.6E-61 1.4E-65 495.1 51.4 506 6-535 395-964 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.8E-53 1.5E-57 433.8 41.3 453 48-533 83-569 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-28 1.3E-32 260.6 48.8 443 18-477 398-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-28 1.1E-32 261.1 46.4 443 16-476 362-832 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 4.9E-23 1.1E-27 190.0 29.6 419 19-457 50-500 (966)
10 PRK11447 cellulose synthase su 99.9 7.2E-21 1.6E-25 206.3 46.2 437 22-477 117-701 (1157)
11 PRK11447 cellulose synthase su 99.9 2.7E-19 5.9E-24 194.1 48.3 426 34-479 252-744 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 8.6E-20 1.9E-24 168.8 30.3 405 55-476 51-485 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-18 5.1E-23 175.5 39.4 385 55-476 130-571 (615)
14 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 173.7 30.1 163 295-483 183-354 (389)
15 PRK10049 pgaA outer membrane p 99.8 3.1E-17 6.8E-22 170.3 41.5 166 12-184 10-178 (765)
16 PRK09782 bacteriophage N4 rece 99.8 2.2E-16 4.8E-21 164.1 47.0 213 252-476 476-706 (987)
17 PRK15174 Vi polysaccharide exp 99.8 1.9E-17 4.2E-22 168.2 37.8 348 64-446 17-386 (656)
18 PRK11788 tetratricopeptide rep 99.8 3.5E-18 7.7E-23 165.5 29.9 287 92-438 44-345 (389)
19 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.8E-21 165.7 43.0 404 49-476 12-456 (765)
20 PRK15174 Vi polysaccharide exp 99.8 5.1E-17 1.1E-21 165.1 36.3 354 93-477 15-382 (656)
21 PRK14574 hmsH outer membrane p 99.8 1E-15 2.2E-20 156.0 43.7 442 10-475 27-512 (822)
22 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-16 1.3E-20 158.0 36.6 397 20-445 130-575 (615)
23 KOG2002 TPR-containing nuclear 99.8 1.6E-16 3.6E-21 154.9 30.4 433 33-476 252-745 (1018)
24 PRK09782 bacteriophage N4 rece 99.8 4.6E-14 1E-18 147.1 46.5 438 21-478 186-742 (987)
25 PRK14574 hmsH outer membrane p 99.8 9.6E-15 2.1E-19 149.0 38.7 428 3-447 57-519 (822)
26 KOG0495 HAT repeat protein [RN 99.7 5.4E-12 1.2E-16 118.6 39.7 447 22-488 411-890 (913)
27 KOG2002 TPR-containing nuclear 99.7 3.6E-13 7.9E-18 132.0 33.2 385 82-476 269-709 (1018)
28 KOG4422 Uncharacterized conser 99.7 8.4E-12 1.8E-16 111.6 38.4 427 14-478 113-592 (625)
29 KOG2003 TPR repeat-containing 99.7 4.1E-14 8.9E-19 126.9 22.2 427 23-462 207-709 (840)
30 KOG2076 RNA polymerase III tra 99.6 5.4E-11 1.2E-15 116.3 41.7 438 25-474 147-732 (895)
31 KOG4422 Uncharacterized conser 99.6 3.3E-12 7.2E-17 114.1 29.4 350 48-442 203-591 (625)
32 KOG0547 Translocase of outer m 99.6 3.4E-12 7.3E-17 116.0 29.8 383 56-475 119-565 (606)
33 KOG1915 Cell cycle control pro 99.6 6.7E-11 1.4E-15 107.3 35.5 407 51-486 72-510 (677)
34 KOG2076 RNA polymerase III tra 99.6 2.3E-11 5E-16 118.8 34.2 412 55-476 142-695 (895)
35 KOG4318 Bicoid mRNA stability 99.5 1.1E-11 2.4E-16 120.4 28.8 420 38-486 11-603 (1088)
36 KOG1915 Cell cycle control pro 99.5 8.9E-11 1.9E-15 106.5 32.6 414 31-478 87-538 (677)
37 KOG2003 TPR repeat-containing 99.5 1.7E-11 3.6E-16 110.5 27.5 410 52-476 201-689 (840)
38 KOG1155 Anaphase-promoting com 99.5 3.2E-11 6.9E-16 109.1 29.2 212 255-521 332-555 (559)
39 KOG1126 DNA-binding cell divis 99.5 1E-12 2.2E-17 124.2 19.9 275 134-476 335-620 (638)
40 PF13429 TPR_15: Tetratricopep 99.5 3E-14 6.6E-19 130.6 8.7 249 194-475 15-276 (280)
41 KOG0495 HAT repeat protein [RN 99.5 6.5E-10 1.4E-14 105.0 36.8 401 65-486 419-854 (913)
42 PRK10747 putative protoheme IX 99.5 2.5E-11 5.3E-16 116.6 28.6 274 166-475 97-389 (398)
43 PF13429 TPR_15: Tetratricopep 99.5 2.8E-13 6E-18 124.3 13.2 180 198-405 88-274 (280)
44 PRK10747 putative protoheme IX 99.5 4.6E-11 9.9E-16 114.8 28.7 216 194-437 160-387 (398)
45 KOG1126 DNA-binding cell divis 99.5 6.2E-12 1.3E-16 119.0 21.0 240 202-475 334-585 (638)
46 KOG1173 Anaphase-promoting com 99.5 2.4E-10 5.2E-15 106.2 30.0 437 20-475 19-517 (611)
47 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3E-15 112.1 29.5 222 194-437 160-396 (409)
48 COG2956 Predicted N-acetylgluc 99.4 7E-10 1.5E-14 96.0 26.8 286 96-437 48-344 (389)
49 TIGR00540 hemY_coli hemY prote 99.4 6.5E-10 1.4E-14 107.5 29.1 280 55-347 85-394 (409)
50 KOG1155 Anaphase-promoting com 99.4 1.9E-09 4.2E-14 97.9 29.1 296 150-475 161-494 (559)
51 COG2956 Predicted N-acetylgluc 99.4 5.9E-10 1.3E-14 96.5 23.7 284 172-482 51-353 (389)
52 PF13041 PPR_2: PPR repeat fam 99.4 2.3E-12 5E-17 82.7 6.8 50 216-265 1-50 (50)
53 KOG2047 mRNA splicing factor [ 99.4 2E-08 4.4E-13 95.0 35.2 284 220-513 389-717 (835)
54 KOG4318 Bicoid mRNA stability 99.4 2.3E-11 5E-16 118.3 16.3 262 239-534 11-276 (1088)
55 COG3071 HemY Uncharacterized e 99.3 5.5E-09 1.2E-13 93.4 29.1 279 96-438 97-388 (400)
56 PF13041 PPR_2: PPR repeat fam 99.3 2E-12 4.4E-17 83.0 5.1 50 81-130 1-50 (50)
57 COG3071 HemY Uncharacterized e 99.3 8.2E-09 1.8E-13 92.4 27.0 274 57-343 87-381 (400)
58 TIGR02521 type_IV_pilW type IV 99.3 1.7E-09 3.8E-14 96.6 22.4 198 219-475 32-231 (234)
59 KOG1840 Kinesin light chain [C 99.3 1.1E-08 2.4E-13 98.1 27.5 244 119-474 200-477 (508)
60 KOG2376 Signal recognition par 99.2 3.7E-07 8E-12 86.0 36.2 424 22-474 17-518 (652)
61 KOG1174 Anaphase-promoting com 99.2 1.5E-07 3.3E-12 84.6 31.2 255 186-450 231-509 (564)
62 KOG0547 Translocase of outer m 99.2 5.7E-08 1.2E-12 89.1 29.0 351 86-476 118-532 (606)
63 KOG1173 Anaphase-promoting com 99.2 2.5E-08 5.3E-13 93.2 26.9 193 115-319 241-441 (611)
64 KOG4162 Predicted calmodulin-b 99.2 1.4E-07 3.1E-12 91.4 32.5 395 47-476 318-783 (799)
65 TIGR02521 type_IV_pilW type IV 99.2 6.5E-09 1.4E-13 92.8 20.8 189 85-279 33-229 (234)
66 KOG1156 N-terminal acetyltrans 99.2 1E-06 2.2E-11 83.9 34.8 441 15-473 6-508 (700)
67 PRK12370 invasion protein regu 99.1 1.7E-08 3.7E-13 101.5 24.9 258 186-478 255-537 (553)
68 KOG3785 Uncharacterized conser 99.1 3.3E-07 7.1E-12 80.8 29.1 430 24-487 29-498 (557)
69 KOG2047 mRNA splicing factor [ 99.1 2.2E-06 4.7E-11 81.7 36.4 412 52-474 102-613 (835)
70 KOG1129 TPR repeat-containing 99.1 3.9E-09 8.4E-14 91.6 17.0 225 222-477 227-459 (478)
71 KOG3785 Uncharacterized conser 99.1 1.4E-07 3E-12 83.0 26.1 394 59-475 29-456 (557)
72 PF12569 NARP1: NMDA receptor- 99.1 5.9E-07 1.3E-11 87.5 33.1 248 25-282 12-291 (517)
73 KOG1840 Kinesin light chain [C 99.1 4.5E-08 9.7E-13 94.0 23.8 249 85-438 201-477 (508)
74 KOG1174 Anaphase-promoting com 99.1 5.9E-06 1.3E-10 74.6 33.7 266 198-475 207-499 (564)
75 KOG1129 TPR repeat-containing 99.0 6.3E-09 1.4E-13 90.3 14.1 223 87-320 227-457 (478)
76 PRK12370 invasion protein regu 99.0 2.2E-08 4.9E-13 100.7 20.5 172 134-317 320-498 (553)
77 KOG1156 N-terminal acetyltrans 99.0 4.8E-06 1E-10 79.6 34.0 414 53-478 9-470 (700)
78 KOG4340 Uncharacterized conser 99.0 1.2E-06 2.6E-11 75.5 25.9 394 52-475 10-442 (459)
79 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3E-12 86.8 21.3 93 221-319 67-159 (296)
80 PF12569 NARP1: NMDA receptor- 99.0 7.6E-07 1.6E-11 86.8 26.1 251 58-322 10-292 (517)
81 KOG0985 Vesicle coat protein c 98.9 3.3E-06 7.1E-11 84.4 30.0 404 20-459 841-1325(1666)
82 COG3063 PilF Tfp pilus assembl 98.9 5.4E-07 1.2E-11 74.9 19.8 197 86-294 38-243 (250)
83 KOG3616 Selective LIM binding 98.9 2.7E-06 5.9E-11 82.2 27.1 248 194-476 739-1024(1636)
84 COG3063 PilF Tfp pilus assembl 98.9 1.1E-06 2.5E-11 73.1 21.2 198 220-447 37-242 (250)
85 KOG3617 WD40 and TPR repeat-co 98.9 4.1E-06 8.8E-11 82.0 28.0 235 51-319 725-994 (1416)
86 KOG2376 Signal recognition par 98.9 1.2E-05 2.5E-10 76.2 29.7 115 358-476 356-487 (652)
87 KOG0548 Molecular co-chaperone 98.9 3.8E-06 8.2E-11 78.6 26.1 89 386-476 365-455 (539)
88 PRK11189 lipoprotein NlpI; Pro 98.9 1.9E-06 4E-11 79.4 24.1 138 172-317 42-190 (296)
89 KOG3616 Selective LIM binding 98.9 6E-06 1.3E-10 79.9 27.6 182 227-435 741-932 (1636)
90 KOG0624 dsRNA-activated protei 98.8 1.1E-05 2.4E-10 71.2 25.6 91 120-214 40-133 (504)
91 KOG3617 WD40 and TPR repeat-co 98.8 2.6E-05 5.6E-10 76.7 29.8 197 27-245 738-994 (1416)
92 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6E-12 83.6 15.1 228 191-447 39-271 (290)
93 PRK04841 transcriptional regul 98.8 0.00011 2.4E-09 79.8 37.6 333 128-477 384-761 (903)
94 cd05804 StaR_like StaR_like; a 98.8 1.9E-05 4.1E-10 75.6 28.2 190 18-214 7-213 (355)
95 KOG4162 Predicted calmodulin-b 98.7 0.00011 2.4E-09 72.0 32.4 411 15-447 321-789 (799)
96 PF04733 Coatomer_E: Coatomer 98.7 1.5E-06 3.3E-11 78.8 18.9 243 62-320 11-264 (290)
97 cd05804 StaR_like StaR_like; a 98.7 4E-05 8.6E-10 73.3 29.8 260 52-320 6-292 (355)
98 KOG1125 TPR repeat-containing 98.7 1E-06 2.2E-11 83.0 16.6 231 227-475 294-526 (579)
99 PF12854 PPR_1: PPR repeat 98.7 3E-08 6.6E-13 56.9 4.2 33 374-406 2-34 (34)
100 KOG1127 TPR repeat-containing 98.7 1.4E-05 3E-10 80.2 24.0 405 53-474 493-994 (1238)
101 KOG0985 Vesicle coat protein c 98.6 0.0003 6.5E-09 71.1 31.9 318 35-391 965-1325(1666)
102 KOG1070 rRNA processing protei 98.6 5.3E-06 1.2E-10 85.9 19.3 204 255-480 1460-1667(1710)
103 PF12854 PPR_1: PPR repeat 98.6 6.7E-08 1.5E-12 55.4 3.2 32 113-144 2-33 (34)
104 KOG0624 dsRNA-activated protei 98.5 0.0001 2.2E-09 65.2 22.9 326 83-447 38-376 (504)
105 KOG1127 TPR repeat-containing 98.5 4.5E-05 9.7E-10 76.7 22.9 132 7-145 485-657 (1238)
106 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.4E-08 62.6 30.8 128 345-475 368-500 (656)
107 PRK04841 transcriptional regul 98.5 0.00055 1.2E-08 74.5 33.4 329 62-406 384-758 (903)
108 KOG1070 rRNA processing protei 98.4 4.2E-05 9.2E-10 79.5 21.5 218 188-434 1459-1694(1710)
109 PRK10370 formate-dependent nit 98.4 6.5E-06 1.4E-10 70.4 13.7 118 357-478 53-175 (198)
110 KOG1128 Uncharacterized conser 98.4 4.6E-06 1E-10 80.8 13.6 206 21-246 402-615 (777)
111 KOG0548 Molecular co-chaperone 98.4 0.0011 2.3E-08 62.7 28.4 227 221-459 227-472 (539)
112 KOG1125 TPR repeat-containing 98.4 5.4E-06 1.2E-10 78.2 13.6 227 94-352 296-527 (579)
113 TIGR03302 OM_YfiO outer membra 98.4 3.4E-05 7.4E-10 68.8 18.1 98 216-320 31-143 (235)
114 PRK15359 type III secretion sy 98.4 5.6E-06 1.2E-10 66.9 11.7 106 364-476 14-121 (144)
115 TIGR03302 OM_YfiO outer membra 98.4 7.2E-05 1.6E-09 66.8 19.5 189 251-476 31-232 (235)
116 KOG4340 Uncharacterized conser 98.3 0.00018 4E-09 62.4 19.5 197 85-293 12-214 (459)
117 PRK14720 transcript cleavage f 98.3 2.1E-05 4.5E-10 80.8 15.2 229 255-512 33-283 (906)
118 PLN02789 farnesyltranstransfer 98.3 0.0004 8.8E-09 64.0 22.3 222 222-474 41-300 (320)
119 PRK14720 transcript cleavage f 98.3 0.00021 4.5E-09 73.7 21.6 232 186-458 30-268 (906)
120 PRK15359 type III secretion sy 98.3 2.5E-05 5.4E-10 63.1 12.3 102 351-457 32-136 (144)
121 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4.2E-11 50.3 4.1 34 85-118 2-35 (35)
122 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 49.9 4.4 34 219-252 1-34 (35)
123 KOG3081 Vesicle coat complex C 98.2 0.00055 1.2E-08 58.7 19.4 170 139-319 94-269 (299)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.9E-05 6.4E-10 72.9 13.3 120 348-474 174-295 (395)
125 KOG1128 Uncharacterized conser 98.2 9.9E-05 2.2E-09 71.9 16.7 214 288-526 394-622 (777)
126 KOG3060 Uncharacterized conser 98.2 0.00075 1.6E-08 57.5 19.7 189 231-447 25-226 (289)
127 COG5010 TadD Flp pilus assembl 98.2 0.00019 4.2E-09 61.4 16.4 111 357-471 114-226 (257)
128 TIGR02552 LcrH_SycD type III s 98.2 3E-05 6.4E-10 62.3 11.2 107 365-476 5-114 (135)
129 PRK15179 Vi polysaccharide bio 98.2 0.00012 2.6E-09 74.6 17.9 124 346-474 89-215 (694)
130 PF13812 PPR_3: Pentatricopept 98.2 4.2E-06 9.1E-11 48.4 4.5 33 219-251 2-34 (34)
131 PLN02789 farnesyltranstransfer 98.2 0.00057 1.2E-08 63.1 20.4 120 91-214 45-169 (320)
132 PRK15363 pathogenicity island 98.1 7.1E-05 1.5E-09 59.5 12.2 95 379-475 35-131 (157)
133 PF13812 PPR_3: Pentatricopept 98.1 3.6E-06 7.8E-11 48.7 3.9 33 84-116 2-34 (34)
134 COG4783 Putative Zn-dependent 98.1 0.0026 5.6E-08 59.7 24.0 190 172-372 253-454 (484)
135 COG5010 TadD Flp pilus assembl 98.1 0.00023 5E-09 61.0 15.5 160 51-216 66-231 (257)
136 KOG3081 Vesicle coat complex C 98.1 0.0034 7.3E-08 54.1 22.0 114 357-475 151-270 (299)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.4E-09 59.7 13.2 129 341-473 10-144 (145)
138 COG4783 Putative Zn-dependent 98.1 0.00092 2E-08 62.6 20.2 115 355-474 318-435 (484)
139 KOG2053 Mitochondrial inherita 98.1 0.017 3.6E-07 58.5 34.8 214 29-248 21-256 (932)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.4E-09 69.1 13.6 117 90-214 176-295 (395)
141 PF14938 SNAP: Soluble NSF att 98.0 0.00071 1.5E-08 61.9 17.6 156 307-474 89-264 (282)
142 PRK10370 formate-dependent nit 97.9 0.00029 6.3E-09 60.3 13.5 143 25-184 24-172 (198)
143 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.4E-08 67.7 18.9 126 52-183 86-215 (694)
144 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 44.4 3.3 29 85-113 2-30 (31)
145 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.9E-10 44.2 3.4 31 219-249 1-31 (31)
146 KOG3060 Uncharacterized conser 97.8 0.0034 7.3E-08 53.7 17.3 191 266-478 25-222 (289)
147 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.2E-08 59.8 16.4 164 268-443 89-268 (282)
148 KOG2280 Vacuolar assembly/sort 97.8 0.048 1E-06 54.2 27.4 340 93-470 399-793 (829)
149 cd00189 TPR Tetratricopeptide 97.8 0.00028 6E-09 52.3 9.3 92 382-475 3-96 (100)
150 PF08579 RPM2: Mitochondrial r 97.7 0.00036 7.7E-09 51.5 8.9 79 87-165 29-116 (120)
151 PF09976 TPR_21: Tetratricopep 97.7 0.0015 3.2E-08 53.1 13.5 90 86-181 15-110 (145)
152 PF10037 MRP-S27: Mitochondria 97.7 0.00044 9.4E-09 65.5 11.4 120 47-166 61-186 (429)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00049 1.1E-08 53.7 10.2 94 381-476 4-105 (119)
154 TIGR02552 LcrH_SycD type III s 97.7 0.0017 3.7E-08 52.0 13.1 96 219-320 18-113 (135)
155 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.7E-09 49.8 6.0 64 410-475 2-66 (69)
156 PF12895 Apc3: Anaphase-promot 97.6 5.3E-05 1.1E-09 54.8 3.4 80 357-436 3-83 (84)
157 PF04840 Vps16_C: Vps16, C-ter 97.6 0.048 1E-06 50.4 23.1 110 346-474 180-289 (319)
158 PRK15363 pathogenicity island 97.6 0.0012 2.7E-08 52.6 11.0 86 263-353 45-133 (157)
159 PF13432 TPR_16: Tetratricopep 97.6 0.00021 4.5E-09 48.7 6.0 58 417-476 3-60 (65)
160 PRK02603 photosystem I assembl 97.6 0.0026 5.7E-08 53.4 13.9 114 219-337 36-165 (172)
161 PF07079 DUF1347: Protein of u 97.6 0.065 1.4E-06 50.1 29.8 429 27-474 16-522 (549)
162 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0011 2.4E-08 51.7 10.8 101 346-447 5-111 (119)
163 KOG2041 WD40 repeat protein [G 97.6 0.06 1.3E-06 53.0 23.7 64 391-456 989-1066(1189)
164 COG4235 Cytochrome c biogenesi 97.5 0.0048 1E-07 54.5 14.7 101 376-478 152-258 (287)
165 PF12895 Apc3: Anaphase-promot 97.5 0.00038 8.2E-09 50.3 6.5 78 392-472 2-83 (84)
166 KOG0553 TPR repeat-containing 97.5 0.00092 2E-08 58.6 9.4 102 353-459 91-195 (304)
167 PLN03088 SGT1, suppressor of 97.5 0.0018 3.9E-08 61.3 12.3 101 351-456 10-113 (356)
168 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.097 2.1E-06 48.9 26.4 130 344-476 398-531 (660)
169 PF05843 Suf: Suppressor of fo 97.4 0.0029 6.3E-08 57.6 12.9 136 293-447 2-142 (280)
170 PRK02603 photosystem I assembl 97.4 0.0019 4E-08 54.3 10.8 95 379-475 35-148 (172)
171 PLN03088 SGT1, suppressor of 97.4 0.0012 2.6E-08 62.4 10.6 89 386-476 9-99 (356)
172 CHL00033 ycf3 photosystem I as 97.4 0.0073 1.6E-07 50.5 14.0 114 219-337 36-165 (168)
173 PF12688 TPR_5: Tetratrico pep 97.4 0.0082 1.8E-07 46.2 12.7 109 224-334 7-117 (120)
174 cd00189 TPR Tetratricopeptide 97.4 0.0028 6.2E-08 46.6 10.4 93 221-319 3-95 (100)
175 PF14559 TPR_19: Tetratricopep 97.4 0.00021 4.6E-09 49.2 3.6 52 422-475 2-53 (68)
176 KOG1538 Uncharacterized conser 97.3 0.047 1E-06 53.2 19.4 255 189-478 558-848 (1081)
177 PF13371 TPR_9: Tetratricopept 97.3 0.00084 1.8E-08 46.9 6.1 58 419-478 3-60 (73)
178 KOG0550 Molecular chaperone (D 97.3 0.027 5.9E-07 51.8 16.6 285 128-444 59-353 (486)
179 PF10037 MRP-S27: Mitochondria 97.2 0.0025 5.5E-08 60.4 10.4 118 80-200 63-186 (429)
180 CHL00033 ycf3 photosystem I as 97.2 0.0038 8.2E-08 52.2 10.5 94 378-473 34-139 (168)
181 PRK10866 outer membrane biogen 97.2 0.1 2.2E-06 46.4 19.8 58 89-148 38-99 (243)
182 KOG1130 Predicted G-alpha GTPa 97.2 0.0014 3E-08 59.8 8.0 126 348-474 200-342 (639)
183 PF06239 ECSIT: Evolutionarily 97.2 0.0018 3.8E-08 54.3 7.9 88 81-168 45-153 (228)
184 COG3898 Uncharacterized membra 97.2 0.17 3.7E-06 46.5 24.9 229 230-476 132-392 (531)
185 PF05843 Suf: Suppressor of fo 97.2 0.013 2.8E-07 53.4 14.5 146 219-389 2-150 (280)
186 KOG2053 Mitochondrial inherita 97.2 0.32 6.9E-06 49.7 40.8 376 19-406 43-500 (932)
187 PRK10153 DNA-binding transcrip 97.2 0.01 2.2E-07 58.9 14.6 150 287-450 332-490 (517)
188 KOG0553 TPR repeat-containing 97.2 0.00076 1.6E-08 59.1 6.0 92 389-484 91-184 (304)
189 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.4E-08 44.3 6.3 61 385-446 3-65 (65)
190 PRK15331 chaperone protein Sic 97.2 0.0064 1.4E-07 48.9 10.2 100 374-475 31-133 (165)
191 PF06239 ECSIT: Evolutionarily 97.0 0.0031 6.7E-08 52.9 7.7 36 98-133 118-153 (228)
192 PRK10153 DNA-binding transcrip 97.0 0.028 6.1E-07 55.8 15.8 137 321-478 335-484 (517)
193 PF04840 Vps16_C: Vps16, C-ter 97.0 0.28 6E-06 45.5 29.5 104 299-436 184-287 (319)
194 PF08579 RPM2: Mitochondrial r 97.0 0.021 4.6E-07 42.4 10.6 79 221-303 28-115 (120)
195 PF14559 TPR_19: Tetratricopep 97.0 0.0037 8E-08 42.9 6.6 51 265-320 3-53 (68)
196 KOG1130 Predicted G-alpha GTPa 96.9 0.0036 7.8E-08 57.2 7.5 51 91-142 25-79 (639)
197 PRK10866 outer membrane biogen 96.9 0.21 4.6E-06 44.4 18.7 55 418-474 182-239 (243)
198 KOG1538 Uncharacterized conser 96.8 0.078 1.7E-06 51.8 15.9 100 253-372 747-846 (1081)
199 PF13414 TPR_11: TPR repeat; P 96.8 0.0032 7E-08 43.3 5.2 64 379-443 3-69 (69)
200 KOG1914 mRNA cleavage and poly 96.8 0.58 1.3E-05 45.1 32.8 426 13-473 16-536 (656)
201 PF12688 TPR_5: Tetratrico pep 96.7 0.035 7.5E-07 42.8 10.6 87 90-180 8-99 (120)
202 PF10300 DUF3808: Protein of u 96.7 0.17 3.6E-06 50.0 18.0 179 274-475 178-375 (468)
203 PRK10803 tol-pal system protei 96.6 0.029 6.2E-07 50.3 11.3 59 221-281 146-208 (263)
204 PRK10803 tol-pal system protei 96.6 0.019 4E-07 51.5 9.9 94 381-475 145-245 (263)
205 PRK15331 chaperone protein Sic 96.6 0.063 1.4E-06 43.3 11.6 103 263-370 47-152 (165)
206 COG4700 Uncharacterized protei 96.5 0.11 2.5E-06 42.4 12.5 154 21-181 60-218 (251)
207 PF03704 BTAD: Bacterial trans 96.5 0.0092 2E-07 48.5 6.5 68 413-482 64-136 (146)
208 COG4700 Uncharacterized protei 96.4 0.41 8.9E-06 39.3 16.6 127 249-402 85-216 (251)
209 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.017 3.7E-07 54.5 8.4 96 378-478 74-176 (453)
210 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.92 2E-05 42.8 29.2 377 38-447 30-537 (660)
211 KOG2280 Vacuolar assembly/sort 96.3 1.4 3E-05 44.5 24.3 309 147-475 426-772 (829)
212 KOG0550 Molecular chaperone (D 96.3 0.91 2E-05 42.3 18.9 158 195-372 177-350 (486)
213 PF13424 TPR_12: Tetratricopep 96.3 0.0079 1.7E-07 42.6 4.8 62 412-474 6-73 (78)
214 KOG2796 Uncharacterized conser 96.3 0.12 2.7E-06 44.7 12.3 122 123-247 182-315 (366)
215 COG4235 Cytochrome c biogenesi 96.3 0.09 2E-06 46.8 11.8 110 216-331 154-268 (287)
216 PF13371 TPR_9: Tetratricopept 96.2 0.014 3.1E-07 40.6 5.6 60 387-447 3-64 (73)
217 KOG2796 Uncharacterized conser 96.1 0.49 1.1E-05 41.2 14.7 141 220-383 179-323 (366)
218 KOG1585 Protein required for f 96.0 0.87 1.9E-05 39.3 16.1 143 325-470 93-250 (308)
219 PF13428 TPR_14: Tetratricopep 96.0 0.013 2.7E-07 35.9 3.9 40 413-454 3-42 (44)
220 PF13525 YfiO: Outer membrane 96.0 0.17 3.7E-06 43.7 12.2 51 349-399 147-198 (203)
221 smart00299 CLH Clathrin heavy 95.9 0.65 1.4E-05 37.2 14.8 129 17-164 7-136 (140)
222 KOG0543 FKBP-type peptidyl-pro 95.9 0.1 2.3E-06 48.3 10.8 96 379-476 257-355 (397)
223 KOG1920 IkappaB kinase complex 95.9 3 6.6E-05 44.5 22.2 134 295-437 911-1052(1265)
224 PF09205 DUF1955: Domain of un 95.9 0.39 8.5E-06 36.9 11.8 116 356-479 15-152 (161)
225 PF13431 TPR_17: Tetratricopep 95.9 0.0064 1.4E-07 34.7 2.0 33 434-468 2-34 (34)
226 PF13281 DUF4071: Domain of un 95.9 0.79 1.7E-05 43.0 16.5 31 217-247 304-334 (374)
227 KOG0543 FKBP-type peptidyl-pro 95.9 0.082 1.8E-06 48.9 9.9 64 411-476 257-320 (397)
228 PF13525 YfiO: Outer membrane 95.8 1.1 2.3E-05 38.7 18.2 180 224-431 11-198 (203)
229 PF12921 ATP13: Mitochondrial 95.8 0.17 3.6E-06 39.5 10.3 53 248-303 47-99 (126)
230 PF03704 BTAD: Bacterial trans 95.7 0.042 9.2E-07 44.6 7.0 71 85-156 64-139 (146)
231 KOG1920 IkappaB kinase complex 95.5 2 4.3E-05 45.8 19.2 107 249-368 931-1051(1265)
232 COG1729 Uncharacterized protei 95.4 0.17 3.7E-06 44.4 9.8 92 265-372 153-244 (262)
233 PF13424 TPR_12: Tetratricopep 95.4 0.065 1.4E-06 37.8 6.1 27 292-318 46-72 (78)
234 PF04053 Coatomer_WDAD: Coatom 95.2 1.1 2.4E-05 43.6 15.8 156 91-277 269-426 (443)
235 PF08631 SPO22: Meiosis protei 95.2 2.4 5.2E-05 38.7 20.5 161 94-254 4-193 (278)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.13 2.8E-06 48.9 9.0 60 344-406 76-139 (453)
237 KOG1941 Acetylcholine receptor 95.1 1.3 2.9E-05 40.5 14.6 202 189-405 45-272 (518)
238 COG3898 Uncharacterized membra 95.1 2.8 6.1E-05 39.0 24.8 243 165-437 132-389 (531)
239 PRK11906 transcriptional regul 95.1 1.2 2.6E-05 42.7 14.8 116 358-475 273-400 (458)
240 smart00299 CLH Clathrin heavy 95.1 1.4 3.1E-05 35.2 14.6 43 87-130 11-53 (140)
241 PF12921 ATP13: Mitochondrial 95.0 0.36 7.8E-06 37.6 9.7 41 348-388 57-97 (126)
242 KOG3941 Intermediate in Toll s 94.9 0.22 4.8E-06 43.7 8.8 113 69-183 51-186 (406)
243 PF14432 DYW_deaminase: DYW fa 94.8 0.029 6.3E-07 43.0 3.2 44 483-538 2-45 (116)
244 COG1729 Uncharacterized protei 94.7 0.19 4.1E-06 44.2 8.1 90 381-475 144-243 (262)
245 KOG0890 Protein kinase of the 94.6 11 0.00024 43.8 22.7 301 158-478 1388-1733(2382)
246 COG3118 Thioredoxin domain-con 94.5 2.8 6.1E-05 37.5 14.8 139 198-342 145-291 (304)
247 PF07035 Mic1: Colon cancer-as 94.5 1.9 4E-05 35.4 12.8 125 103-236 14-138 (167)
248 PF09205 DUF1955: Domain of un 94.3 1.8 4E-05 33.4 11.4 56 193-248 92-150 (161)
249 KOG3941 Intermediate in Toll s 94.3 0.39 8.5E-06 42.2 9.0 104 16-134 66-174 (406)
250 PF04053 Coatomer_WDAD: Coatom 94.3 4.3 9.3E-05 39.7 17.2 160 126-318 269-428 (443)
251 KOG1941 Acetylcholine receptor 94.2 0.28 6.1E-06 44.6 8.1 123 350-473 129-272 (518)
252 PF13512 TPR_18: Tetratricopep 94.2 1.1 2.4E-05 35.4 10.5 61 386-447 17-82 (142)
253 COG3118 Thioredoxin domain-con 93.9 1.2 2.6E-05 39.8 11.4 119 354-478 145-267 (304)
254 PF04184 ST7: ST7 protein; In 93.9 3.6 7.8E-05 39.7 15.0 98 349-447 265-381 (539)
255 PF10300 DUF3808: Protein of u 93.8 2.7 5.8E-05 41.7 15.1 155 157-319 192-374 (468)
256 KOG4555 TPR repeat-containing 93.8 0.95 2.1E-05 34.8 9.1 54 262-320 52-105 (175)
257 PF13281 DUF4071: Domain of un 93.7 6.2 0.00014 37.2 18.8 35 410-445 304-338 (374)
258 KOG1258 mRNA processing protei 93.6 8.2 0.00018 38.2 30.2 400 21-461 49-489 (577)
259 KOG4555 TPR repeat-containing 93.6 0.66 1.4E-05 35.6 7.9 89 388-478 52-146 (175)
260 PF07719 TPR_2: Tetratricopept 93.5 0.22 4.7E-06 28.1 4.3 31 413-444 3-33 (34)
261 PRK11906 transcriptional regul 93.3 3.8 8.2E-05 39.4 14.2 111 357-472 318-432 (458)
262 PF08631 SPO22: Meiosis protei 93.3 6.5 0.00014 35.9 21.6 129 199-333 5-165 (278)
263 PF00515 TPR_1: Tetratricopept 93.2 0.19 4E-06 28.5 3.7 31 413-444 3-33 (34)
264 PF02259 FAT: FAT domain; Int 92.9 8.8 0.00019 36.4 18.4 84 321-405 120-210 (352)
265 PF00637 Clathrin: Region in C 92.7 0.23 5.1E-06 40.0 5.0 54 89-142 13-66 (143)
266 COG3629 DnrI DNA-binding trans 92.5 0.66 1.4E-05 41.5 7.8 61 413-475 155-215 (280)
267 KOG2114 Vacuolar assembly/sort 92.2 13 0.00028 38.5 16.9 142 190-343 337-483 (933)
268 PF13170 DUF4003: Protein of u 92.2 5.2 0.00011 36.7 13.4 134 33-168 78-232 (297)
269 KOG4570 Uncharacterized conser 92.1 0.52 1.1E-05 42.1 6.6 102 45-148 57-165 (418)
270 KOG2610 Uncharacterized conser 91.8 2.1 4.5E-05 38.9 9.9 84 352-437 146-235 (491)
271 PF13176 TPR_7: Tetratricopept 91.8 0.33 7.2E-06 28.0 3.5 25 449-474 2-26 (36)
272 PF13428 TPR_14: Tetratricopep 91.7 0.78 1.7E-05 27.9 5.3 25 222-246 5-29 (44)
273 TIGR02561 HrpB1_HrpK type III 91.7 0.8 1.7E-05 36.3 6.5 52 392-444 23-76 (153)
274 COG4649 Uncharacterized protei 91.6 5.8 0.00012 32.5 11.2 120 354-475 69-195 (221)
275 PF09613 HrpB1_HrpK: Bacterial 91.5 0.86 1.9E-05 36.8 6.6 71 390-462 21-93 (160)
276 PF13176 TPR_7: Tetratricopept 91.4 0.55 1.2E-05 27.0 4.2 26 220-245 1-26 (36)
277 PRK11619 lytic murein transgly 91.3 20 0.00044 37.2 33.0 116 357-474 255-373 (644)
278 PF13431 TPR_17: Tetratricopep 91.2 0.33 7.2E-06 27.5 3.0 25 288-312 9-33 (34)
279 PF10602 RPN7: 26S proteasome 90.8 3.1 6.6E-05 34.9 9.8 98 220-319 38-140 (177)
280 KOG1258 mRNA processing protei 90.7 19 0.00042 35.8 27.8 83 28-111 90-179 (577)
281 COG4105 ComL DNA uptake lipopr 90.4 12 0.00026 33.0 19.1 58 349-406 173-231 (254)
282 KOG1585 Protein required for f 89.7 13 0.00028 32.4 15.5 16 353-368 200-215 (308)
283 KOG2114 Vacuolar assembly/sort 89.6 28 0.00062 36.2 29.0 215 15-244 281-516 (933)
284 PF10602 RPN7: 26S proteasome 89.6 11 0.00024 31.5 13.3 100 291-406 35-140 (177)
285 PF09613 HrpB1_HrpK: Bacterial 89.6 8.7 0.00019 31.2 10.8 74 348-424 15-90 (160)
286 COG3629 DnrI DNA-binding trans 89.4 1.8 3.8E-05 38.9 7.5 72 55-126 156-235 (280)
287 KOG2041 WD40 repeat protein [G 89.2 28 0.0006 35.4 26.6 107 120-244 798-904 (1189)
288 PF07035 Mic1: Colon cancer-as 88.8 12 0.00026 30.8 13.4 133 138-281 14-148 (167)
289 PRK09687 putative lyase; Provi 88.8 19 0.0004 32.9 24.8 80 50-131 35-118 (280)
290 PF13181 TPR_8: Tetratricopept 88.6 0.88 1.9E-05 25.5 3.5 29 414-443 4-32 (34)
291 KOG4234 TPR repeat-containing 88.5 1.4 3.1E-05 36.7 5.7 86 389-476 105-197 (271)
292 COG4785 NlpI Lipoprotein NlpI, 88.5 15 0.00032 31.5 13.7 160 218-406 99-264 (297)
293 KOG1586 Protein required for f 88.2 17 0.00036 31.6 18.6 117 330-447 100-230 (288)
294 KOG0276 Vesicle coat complex C 88.0 9.5 0.00021 37.8 11.6 147 304-473 598-747 (794)
295 PF00515 TPR_1: Tetratricopept 87.8 1.5 3.3E-05 24.6 4.2 28 219-246 2-29 (34)
296 PF13512 TPR_18: Tetratricopep 87.7 12 0.00027 29.7 13.2 55 228-282 20-76 (142)
297 COG4649 Uncharacterized protei 87.7 14 0.00031 30.3 12.6 133 18-151 60-200 (221)
298 PF14853 Fis1_TPR_C: Fis1 C-te 87.6 4 8.6E-05 26.0 6.2 48 452-525 6-53 (53)
299 PF04184 ST7: ST7 protein; In 87.5 5.8 0.00012 38.4 9.8 70 411-482 259-330 (539)
300 KOG3364 Membrane protein invol 87.3 8.8 0.00019 30.0 8.9 71 376-447 29-106 (149)
301 COG4785 NlpI Lipoprotein NlpI, 87.2 18 0.00039 31.0 13.3 81 64-147 77-162 (297)
302 COG2976 Uncharacterized protei 87.0 17 0.00037 30.6 12.8 90 385-477 95-189 (207)
303 PF07079 DUF1347: Protein of u 86.8 31 0.00067 33.2 29.1 28 187-214 298-325 (549)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 86.6 7.3 0.00016 28.3 7.6 50 233-282 22-71 (103)
305 PF00637 Clathrin: Region in C 86.5 0.54 1.2E-05 37.9 2.4 86 22-110 12-97 (143)
306 PF02284 COX5A: Cytochrome c o 86.5 6.9 0.00015 28.8 7.5 50 233-282 25-74 (108)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 5.5 0.00012 28.9 6.8 61 98-159 22-82 (103)
308 PF13170 DUF4003: Protein of u 86.0 19 0.00041 33.2 12.2 136 234-387 78-225 (297)
309 KOG2066 Vacuolar assembly/sort 86.0 46 0.001 34.5 24.9 147 90-246 363-533 (846)
310 KOG1586 Protein required for f 85.8 11 0.00024 32.6 9.6 33 345-378 156-188 (288)
311 COG0457 NrfG FOG: TPR repeat [ 85.7 22 0.00049 30.6 23.9 221 231-476 36-265 (291)
312 PF13762 MNE1: Mitochondrial s 84.9 14 0.0003 29.6 9.3 88 44-131 29-128 (145)
313 PF07721 TPR_4: Tetratricopept 84.5 1.4 2.9E-05 23.1 2.6 20 452-471 6-25 (26)
314 COG0457 NrfG FOG: TPR repeat [ 84.5 25 0.00055 30.2 21.7 204 218-444 59-268 (291)
315 TIGR02561 HrpB1_HrpK type III 84.2 20 0.00043 28.7 13.0 98 265-370 22-120 (153)
316 PF13374 TPR_10: Tetratricopep 83.8 3.2 6.8E-05 24.4 4.4 28 219-246 3-30 (42)
317 KOG2610 Uncharacterized conser 83.5 37 0.0008 31.3 15.9 112 200-317 116-234 (491)
318 PF07719 TPR_2: Tetratricopept 83.3 3.4 7.3E-05 23.0 4.2 27 220-246 3-29 (34)
319 PF13174 TPR_6: Tetratricopept 83.1 2.3 4.9E-05 23.5 3.4 24 452-475 5-28 (33)
320 PF02284 COX5A: Cytochrome c o 83.0 6.9 0.00015 28.8 6.3 58 101-159 28-85 (108)
321 PF13374 TPR_10: Tetratricopep 82.9 3.1 6.7E-05 24.5 4.1 24 414-437 5-28 (42)
322 PF11207 DUF2989: Protein of u 82.9 24 0.00053 29.9 10.4 82 228-312 117-198 (203)
323 COG1747 Uncharacterized N-term 82.8 51 0.0011 32.4 17.8 60 220-282 68-127 (711)
324 KOG0890 Protein kinase of the 82.7 1.1E+02 0.0025 36.4 28.3 119 22-144 1388-1509(2382)
325 KOG4570 Uncharacterized conser 82.6 4.3 9.4E-05 36.6 6.2 98 287-406 59-162 (418)
326 PRK09687 putative lyase; Provi 82.5 39 0.00085 30.9 26.2 228 183-444 33-266 (280)
327 TIGR03504 FimV_Cterm FimV C-te 82.4 2.6 5.5E-05 25.6 3.4 26 452-477 4-29 (44)
328 COG5159 RPN6 26S proteasome re 82.2 19 0.0004 32.3 9.8 132 224-355 9-157 (421)
329 PF04190 DUF410: Protein of un 81.9 39 0.00084 30.5 19.5 127 245-371 41-169 (260)
330 PF13174 TPR_6: Tetratricopept 81.4 2 4.3E-05 23.7 2.7 23 415-437 4-26 (33)
331 TIGR03504 FimV_Cterm FimV C-te 81.4 3.3 7.1E-05 25.2 3.6 25 124-148 5-29 (44)
332 PF13181 TPR_8: Tetratricopept 79.9 4.1 8.8E-05 22.7 3.7 26 449-475 4-29 (34)
333 KOG4648 Uncharacterized conser 79.5 5 0.00011 36.7 5.7 50 195-244 105-157 (536)
334 KOG0403 Neoplastic transformat 78.7 65 0.0014 31.1 18.4 26 220-245 347-372 (645)
335 PF02259 FAT: FAT domain; Int 77.5 65 0.0014 30.4 19.9 61 186-246 145-212 (352)
336 KOG4648 Uncharacterized conser 77.2 4.5 9.8E-05 36.9 4.7 109 350-467 104-215 (536)
337 KOG0276 Vesicle coat complex C 76.1 44 0.00096 33.5 11.2 132 155-318 616-747 (794)
338 smart00028 TPR Tetratricopepti 75.7 6.6 0.00014 20.7 3.9 20 418-437 8-27 (34)
339 COG3947 Response regulator con 74.5 12 0.00026 33.6 6.4 60 413-474 281-340 (361)
340 PF11207 DUF2989: Protein of u 74.2 39 0.00085 28.7 9.2 68 100-168 123-193 (203)
341 PF10579 Rapsyn_N: Rapsyn N-te 74.2 10 0.00022 26.4 4.8 48 355-402 18-66 (80)
342 KOG4234 TPR repeat-containing 73.9 48 0.0011 28.1 9.4 19 228-246 105-123 (271)
343 PF14669 Asp_Glu_race_2: Putat 73.7 54 0.0012 27.6 14.3 167 217-405 7-207 (233)
344 PRK15180 Vi polysaccharide bio 73.4 53 0.0012 31.9 10.7 126 356-487 302-429 (831)
345 PF14853 Fis1_TPR_C: Fis1 C-te 72.6 11 0.00024 24.0 4.4 31 416-447 6-36 (53)
346 PF06552 TOM20_plant: Plant sp 72.3 55 0.0012 27.3 9.3 109 359-478 7-138 (186)
347 COG4105 ComL DNA uptake lipopr 72.2 71 0.0015 28.4 19.6 57 417-474 173-231 (254)
348 cd08819 CARD_MDA5_2 Caspase ac 71.8 15 0.00032 26.3 5.2 35 200-235 49-83 (88)
349 COG4455 ImpE Protein of avirul 71.7 16 0.00035 31.3 6.3 66 381-447 3-70 (273)
350 PRK10941 hypothetical protein; 71.2 21 0.00047 32.2 7.6 60 414-475 184-243 (269)
351 cd08819 CARD_MDA5_2 Caspase ac 69.9 29 0.00062 24.8 6.3 66 36-103 21-86 (88)
352 KOG1464 COP9 signalosome, subu 69.9 82 0.0018 28.1 16.2 213 231-461 40-286 (440)
353 KOG1498 26S proteasome regulat 69.8 1E+02 0.0022 29.2 13.2 126 383-513 135-278 (439)
354 PF04910 Tcf25: Transcriptiona 68.7 1.1E+02 0.0024 29.2 14.5 116 288-406 36-166 (360)
355 COG3947 Response regulator con 68.6 20 0.00044 32.2 6.5 59 255-318 281-339 (361)
356 COG4455 ImpE Protein of avirul 68.4 26 0.00055 30.2 6.8 57 258-319 6-62 (273)
357 COG5159 RPN6 26S proteasome re 68.3 53 0.0012 29.5 9.0 121 352-474 12-152 (421)
358 TIGR02508 type_III_yscG type I 67.9 47 0.001 24.5 9.0 85 33-121 21-105 (115)
359 PHA02875 ankyrin repeat protei 66.9 1.2E+02 0.0027 29.5 12.8 38 40-77 18-57 (413)
360 PF08967 DUF1884: Domain of un 66.8 5.7 0.00012 27.5 2.3 28 505-532 6-33 (85)
361 KOG2396 HAT (Half-A-TPR) repea 66.7 1.4E+02 0.003 29.5 20.8 99 287-405 455-556 (568)
362 PF10255 Paf67: RNA polymerase 66.5 33 0.00072 32.9 8.1 61 413-474 124-191 (404)
363 COG2909 MalT ATP-dependent tra 65.9 1.9E+02 0.0041 30.9 21.5 80 264-343 426-517 (894)
364 PF07163 Pex26: Pex26 protein; 65.5 1E+02 0.0023 27.8 10.2 87 225-315 90-181 (309)
365 KOG4077 Cytochrome c oxidase, 65.3 60 0.0013 25.2 7.5 48 235-282 66-113 (149)
366 PF04097 Nic96: Nup93/Nic96; 65.1 1.8E+02 0.0039 30.3 25.7 34 412-447 501-539 (613)
367 KOG4642 Chaperone-dependent E3 65.0 25 0.00055 30.7 6.3 84 352-438 19-105 (284)
368 KOG4077 Cytochrome c oxidase, 64.8 38 0.00081 26.2 6.4 47 101-147 67-113 (149)
369 PF09986 DUF2225: Uncharacteri 64.8 53 0.0011 28.6 8.5 89 389-478 87-196 (214)
370 TIGR02508 type_III_yscG type I 64.8 55 0.0012 24.2 9.8 60 195-257 47-106 (115)
371 KOG4279 Serine/threonine prote 63.3 1.8E+02 0.004 30.3 12.5 178 219-446 202-400 (1226)
372 KOG1308 Hsp70-interacting prot 63.0 5.5 0.00012 36.5 2.2 89 391-481 126-216 (377)
373 PF09477 Type_III_YscG: Bacter 62.1 65 0.0014 24.2 8.8 81 30-113 19-99 (116)
374 KOG2422 Uncharacterized conser 61.8 1.2E+02 0.0026 30.5 10.8 166 266-437 251-445 (665)
375 PF13762 MNE1: Mitochondrial s 61.7 66 0.0014 25.8 7.7 51 216-266 77-128 (145)
376 PF10345 Cohesin_load: Cohesin 61.2 2.1E+02 0.0046 29.8 27.8 82 201-282 153-254 (608)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 61.1 69 0.0015 25.0 7.8 43 429-472 81-124 (126)
378 PRK09169 hypothetical protein; 60.9 3.7E+02 0.0081 32.5 39.9 450 17-473 122-692 (2316)
379 KOG0686 COP9 signalosome, subu 60.2 1.6E+02 0.0035 28.2 11.3 167 53-226 151-352 (466)
380 PF10579 Rapsyn_N: Rapsyn N-te 59.7 23 0.0005 24.8 4.2 46 423-469 18-65 (80)
381 PF13929 mRNA_stabil: mRNA sta 59.4 1.4E+02 0.0031 27.2 13.2 59 151-212 200-263 (292)
382 PRK10564 maltose regulon perip 58.8 22 0.00047 32.3 5.1 45 216-260 254-299 (303)
383 PHA03100 ankyrin repeat protei 58.5 2E+02 0.0044 28.7 16.0 150 22-184 37-201 (480)
384 PRK11619 lytic murein transgly 58.4 2.4E+02 0.0052 29.6 36.4 95 386-481 414-510 (644)
385 PHA02875 ankyrin repeat protei 58.4 1.9E+02 0.004 28.2 17.8 10 362-371 299-308 (413)
386 KOG2063 Vacuolar assembly/sort 58.0 2.8E+02 0.006 30.1 16.1 26 54-79 506-531 (877)
387 PF04910 Tcf25: Transcriptiona 57.9 1.8E+02 0.0038 27.8 13.5 96 378-475 39-167 (360)
388 PF07163 Pex26: Pex26 protein; 57.4 1.3E+02 0.0028 27.3 9.3 74 90-163 90-163 (309)
389 KOG2063 Vacuolar assembly/sort 57.3 2.8E+02 0.0061 30.0 17.8 192 189-392 506-745 (877)
390 PF12862 Apc5: Anaphase-promot 56.9 38 0.00083 24.7 5.5 54 421-475 8-69 (94)
391 PF11846 DUF3366: Domain of un 56.8 45 0.00099 28.3 6.8 36 407-443 140-175 (193)
392 PF11846 DUF3366: Domain of un 55.8 44 0.00096 28.4 6.6 45 362-409 130-175 (193)
393 PF11663 Toxin_YhaV: Toxin wit 54.7 18 0.0004 28.2 3.4 31 96-128 108-138 (140)
394 COG2909 MalT ATP-dependent tra 54.4 3E+02 0.0066 29.5 26.0 92 229-320 426-525 (894)
395 PF11848 DUF3368: Domain of un 53.6 47 0.001 20.6 4.6 38 24-61 9-46 (48)
396 COG2976 Uncharacterized protei 53.3 1.4E+02 0.0031 25.4 16.5 94 347-445 93-192 (207)
397 PF04190 DUF410: Protein of un 53.1 1.7E+02 0.0038 26.3 16.0 82 151-246 88-169 (260)
398 PF11848 DUF3368: Domain of un 51.4 57 0.0012 20.2 5.3 34 228-261 12-45 (48)
399 PF10366 Vps39_1: Vacuolar sor 51.2 1E+02 0.0023 23.2 7.4 27 85-111 41-67 (108)
400 PF14689 SPOB_a: Sensor_kinase 51.1 22 0.00047 23.6 3.0 23 452-474 28-50 (62)
401 PF14689 SPOB_a: Sensor_kinase 51.1 36 0.00079 22.5 4.1 29 377-405 21-49 (62)
402 KOG0376 Serine-threonine phosp 50.3 30 0.00064 33.6 4.8 102 263-389 14-115 (476)
403 cd08326 CARD_CASP9 Caspase act 50.0 43 0.00093 23.9 4.5 33 201-233 44-76 (84)
404 PF06552 TOM20_plant: Plant sp 49.8 99 0.0022 25.9 7.1 61 359-422 51-124 (186)
405 cd00280 TRFH Telomeric Repeat 49.5 1E+02 0.0022 25.9 7.0 61 359-420 85-152 (200)
406 PF11817 Foie-gras_1: Foie gra 49.4 97 0.0021 27.7 7.9 21 349-369 184-204 (247)
407 PF12926 MOZART2: Mitotic-spin 49.0 97 0.0021 22.2 7.0 43 37-79 28-70 (88)
408 KOG0551 Hsp90 co-chaperone CNS 48.2 96 0.0021 28.8 7.3 93 380-474 82-180 (390)
409 PF10366 Vps39_1: Vacuolar sor 47.4 1.2E+02 0.0026 22.9 8.0 27 220-246 41-67 (108)
410 KOG0545 Aryl-hydrocarbon recep 46.8 1.3E+02 0.0027 26.7 7.5 87 387-475 186-292 (329)
411 COG4976 Predicted methyltransf 46.1 37 0.0008 29.5 4.3 52 422-475 6-57 (287)
412 PRK10941 hypothetical protein; 45.6 96 0.0021 28.1 7.2 66 381-447 183-250 (269)
413 PRK10564 maltose regulon perip 45.5 40 0.00087 30.7 4.7 36 115-150 253-289 (303)
414 KOG0292 Vesicle coat complex C 45.5 2E+02 0.0043 30.8 9.8 177 231-476 606-782 (1202)
415 COG5108 RPO41 Mitochondrial DN 45.1 1.2E+02 0.0027 30.9 8.2 71 192-265 33-115 (1117)
416 KOG2066 Vacuolar assembly/sort 44.7 4.1E+02 0.0088 28.1 23.2 170 125-323 363-536 (846)
417 COG0735 Fur Fe2+/Zn2+ uptake r 44.2 1.4E+02 0.0031 24.0 7.3 64 104-168 7-70 (145)
418 KOG1464 COP9 signalosome, subu 44.1 2.4E+02 0.0052 25.3 15.1 128 192-319 70-218 (440)
419 KOG0376 Serine-threonine phosp 43.5 17 0.00036 35.2 2.1 94 350-447 11-107 (476)
420 PF10345 Cohesin_load: Cohesin 43.1 4.1E+02 0.0089 27.7 32.6 52 265-316 373-428 (608)
421 KOG4507 Uncharacterized conser 43.0 69 0.0015 32.1 6.1 142 50-195 569-718 (886)
422 smart00386 HAT HAT (Half-A-TPR 42.9 53 0.0011 17.4 4.2 29 267-300 1-29 (33)
423 TIGR02328 conserved hypothetic 42.8 36 0.00078 25.5 3.2 27 506-532 47-73 (120)
424 PF09454 Vps23_core: Vps23 cor 41.8 91 0.002 20.9 4.8 51 214-265 4-54 (65)
425 KOG4521 Nuclear pore complex, 41.4 5.5E+02 0.012 28.7 15.1 168 298-470 926-1125(1480)
426 PF11817 Foie-gras_1: Foie gra 40.8 1E+02 0.0022 27.6 6.6 25 381-405 180-204 (247)
427 PF11663 Toxin_YhaV: Toxin wit 40.4 33 0.00071 26.9 2.9 32 229-262 106-137 (140)
428 COG5108 RPO41 Mitochondrial DN 40.2 1.2E+02 0.0027 31.0 7.3 76 348-423 33-115 (1117)
429 PF13934 ELYS: Nuclear pore co 39.7 2.6E+02 0.0057 24.5 13.4 21 385-405 114-134 (226)
430 PF02334 RTP: Replication term 39.6 3.8 8.3E-05 30.1 -2.0 21 512-532 37-57 (122)
431 TIGR02270 conserved hypothetic 39.2 3.8E+02 0.0082 26.2 23.8 24 297-320 257-280 (410)
432 KOG4507 Uncharacterized conser 39.0 1.1E+02 0.0024 30.7 6.8 90 357-450 621-714 (886)
433 PF14863 Alkyl_sulf_dimr: Alky 39.0 1.3E+02 0.0028 24.1 6.2 63 395-462 57-119 (141)
434 KOG4642 Chaperone-dependent E3 38.9 1.4E+02 0.0031 26.3 6.7 22 223-244 49-70 (284)
435 PF11123 DNA_Packaging_2: DNA 38.7 65 0.0014 22.0 3.6 31 307-337 12-45 (82)
436 cd00280 TRFH Telomeric Repeat 38.4 2.4E+02 0.0053 23.8 9.3 41 297-337 116-157 (200)
437 PF09670 Cas_Cas02710: CRISPR- 38.1 3.8E+02 0.0082 25.9 12.0 56 226-282 139-198 (379)
438 PRK13800 putative oxidoreducta 36.8 6.2E+02 0.013 28.0 25.6 236 74-333 626-862 (897)
439 PF12968 DUF3856: Domain of Un 36.3 2E+02 0.0044 22.2 7.0 60 413-473 57-126 (144)
440 cd08332 CARD_CASP2 Caspase act 36.1 1E+02 0.0022 22.3 4.8 29 202-230 49-77 (90)
441 KOG3807 Predicted membrane pro 35.9 3.7E+02 0.0079 25.1 13.4 96 352-450 284-399 (556)
442 KOG0991 Replication factor C, 35.8 3.1E+02 0.0068 24.2 12.7 58 205-264 226-283 (333)
443 PRK14700 recombination factor 35.5 3.6E+02 0.0078 24.9 10.0 48 221-268 126-176 (300)
444 KOG4567 GTPase-activating prot 34.4 3.8E+02 0.0082 24.8 9.5 79 138-220 263-351 (370)
445 PF03745 DUF309: Domain of unk 34.1 1.4E+02 0.0031 19.8 5.2 35 228-262 9-43 (62)
446 KOG2471 TPR repeat-containing 34.0 4.9E+02 0.011 25.9 15.0 103 196-304 249-381 (696)
447 PF09670 Cas_Cas02710: CRISPR- 33.9 4.4E+02 0.0096 25.4 10.7 56 91-147 139-198 (379)
448 PLN03192 Voltage-dependent pot 33.9 6.6E+02 0.014 27.4 13.4 38 94-135 533-572 (823)
449 KOG0991 Replication factor C, 33.5 3.4E+02 0.0074 24.0 11.6 69 374-445 189-273 (333)
450 KOG2168 Cullins [Cell cycle co 33.4 6.4E+02 0.014 27.1 17.0 24 22-45 330-353 (835)
451 PF09454 Vps23_core: Vps23 cor 33.4 46 0.00099 22.4 2.4 46 82-128 7-52 (65)
452 PF09477 Type_III_YscG: Bacter 33.4 2.1E+02 0.0046 21.6 9.8 16 133-148 21-36 (116)
453 cd07153 Fur_like Ferric uptake 33.2 1E+02 0.0022 23.4 4.8 49 22-70 5-53 (116)
454 PRK09462 fur ferric uptake reg 33.2 2.4E+02 0.0052 22.7 7.2 60 108-168 7-67 (148)
455 KOG4567 GTPase-activating prot 33.0 4E+02 0.0087 24.7 9.7 78 238-324 263-350 (370)
456 PF14669 Asp_Glu_race_2: Putat 32.9 3.1E+02 0.0067 23.4 14.8 99 210-318 99-207 (233)
457 PF12796 Ank_2: Ankyrin repeat 32.6 1.5E+02 0.0033 20.8 5.5 12 65-76 7-18 (89)
458 PF13929 mRNA_stabil: mRNA sta 32.1 4E+02 0.0087 24.4 15.3 65 249-316 198-262 (292)
459 PRK11639 zinc uptake transcrip 31.3 2.1E+02 0.0045 23.8 6.6 34 232-265 39-72 (169)
460 PF00356 LacI: Bacterial regul 31.3 53 0.0012 20.2 2.3 15 514-528 32-46 (46)
461 COG0735 Fur Fe2+/Zn2+ uptake r 30.8 2.8E+02 0.0061 22.3 7.0 61 242-307 10-70 (145)
462 cd08323 CARD_APAF1 Caspase act 30.7 1.7E+02 0.0038 21.0 5.1 32 201-232 42-73 (86)
463 COG4941 Predicted RNA polymera 30.7 4.6E+02 0.01 24.6 9.4 115 358-475 271-393 (415)
464 PF09868 DUF2095: Uncharacteri 30.6 1.7E+02 0.0038 22.1 5.1 43 20-63 64-106 (128)
465 PF06957 COPI_C: Coatomer (COP 30.4 3.6E+02 0.0079 26.4 8.7 40 406-446 293-334 (422)
466 PF12862 Apc5: Anaphase-promot 30.4 2.1E+02 0.0046 20.7 7.0 22 298-319 47-68 (94)
467 PRK13342 recombination factor 30.2 5.3E+02 0.012 25.2 17.6 47 220-266 229-278 (413)
468 COG5187 RPN7 26S proteasome re 30.2 4.3E+02 0.0094 24.2 9.5 67 411-478 115-186 (412)
469 COG4976 Predicted methyltransf 30.1 97 0.0021 27.1 4.3 48 355-405 7-55 (287)
470 KOG2422 Uncharacterized conser 29.6 6.2E+02 0.013 25.8 11.7 117 356-474 251-405 (665)
471 cd07153 Fur_like Ferric uptake 29.2 1.4E+02 0.003 22.7 5.0 46 224-269 6-51 (116)
472 PF09986 DUF2225: Uncharacteri 29.1 3.2E+02 0.0068 23.8 7.6 52 99-150 141-197 (214)
473 PF07064 RIC1: RIC1; InterPro 29.1 4.3E+02 0.0094 23.8 15.0 88 190-282 156-249 (258)
474 KOG1550 Extracellular protein 29.0 6.5E+02 0.014 25.9 18.5 117 28-148 260-394 (552)
475 PF05053 Menin: Menin; InterP 28.9 6.3E+02 0.014 25.7 10.2 92 267-371 274-366 (618)
476 KOG1550 Extracellular protein 28.4 6.7E+02 0.014 25.8 16.0 65 99-167 228-302 (552)
477 KOG3364 Membrane protein invol 28.2 3.1E+02 0.0067 21.9 8.2 68 409-477 30-101 (149)
478 PRK14962 DNA polymerase III su 27.6 6.4E+02 0.014 25.3 12.2 40 36-77 181-221 (472)
479 smart00777 Mad3_BUB1_I Mad3/BU 27.5 3E+02 0.0065 21.5 8.0 41 430-471 82-123 (125)
480 PF11838 ERAP1_C: ERAP1-like C 26.9 5.1E+02 0.011 24.0 10.8 111 33-143 146-262 (324)
481 PF02184 HAT: HAT (Half-A-TPR) 26.2 1.3E+02 0.0028 16.9 3.3 26 358-386 2-27 (32)
482 PF01475 FUR: Ferric uptake re 25.9 1.1E+02 0.0024 23.4 3.9 50 21-70 11-60 (120)
483 KOG4521 Nuclear pore complex, 25.9 1E+03 0.022 27.0 14.2 19 228-246 930-948 (1480)
484 cd08326 CARD_CASP9 Caspase act 25.8 2.4E+02 0.0053 20.1 5.2 60 37-100 19-78 (84)
485 PF01475 FUR: Ferric uptake re 25.6 1.3E+02 0.0027 23.1 4.2 46 223-268 12-57 (120)
486 KOG2297 Predicted translation 25.4 5.1E+02 0.011 24.0 8.0 159 41-207 174-341 (412)
487 PF08311 Mad3_BUB1_I: Mad3/BUB 25.3 3.3E+02 0.0072 21.2 9.2 41 236-276 81-122 (126)
488 PRK11639 zinc uptake transcrip 25.2 3.4E+02 0.0074 22.5 6.8 58 110-168 18-75 (169)
489 PF08424 NRDE-2: NRDE-2, neces 25.1 5.8E+02 0.012 23.9 17.9 132 234-378 47-189 (321)
490 KOG3824 Huntingtin interacting 25.0 1.2E+02 0.0027 27.7 4.2 57 390-447 127-185 (472)
491 PF11768 DUF3312: Protein of u 24.7 4E+02 0.0087 26.9 8.0 62 55-116 411-477 (545)
492 KOG3636 Uncharacterized conser 24.7 6.7E+02 0.014 24.5 9.2 83 247-334 177-271 (669)
493 COG4003 Uncharacterized protei 24.3 2.4E+02 0.0053 19.8 4.6 27 21-47 35-61 (98)
494 COG2256 MGS1 ATPase related to 24.2 6.7E+02 0.015 24.4 12.4 52 216-267 244-298 (436)
495 PF07720 TPR_3: Tetratricopept 24.2 1.5E+02 0.0033 17.0 4.2 14 420-433 10-23 (36)
496 KOG2753 Uncharacterized conser 24.0 4.3E+02 0.0093 24.7 7.4 161 207-386 52-227 (378)
497 KOG2223 Uncharacterized conser 23.7 6.9E+02 0.015 24.4 9.6 107 365-477 461-577 (586)
498 KOG1839 Uncharacterized protei 23.6 1.1E+03 0.025 26.8 12.0 131 16-146 931-1085(1236)
499 PF06855 DUF1250: Protein of u 23.3 63 0.0014 19.8 1.6 40 5-44 3-42 (46)
500 PF12968 DUF3856: Domain of Un 23.3 3.6E+02 0.0078 20.9 6.1 60 378-437 54-126 (144)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-78 Score=633.35 Aligned_cols=515 Identities=32% Similarity=0.590 Sum_probs=473.5
Q ss_pred CCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHH
Q 044988 12 ATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIR 91 (538)
Q Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 91 (538)
+..|+..+|+.++.+|+..++...+.+++..+.+.|+.|++.+++.|+.+|++.|++++|.++|++|++||..+||.+|.
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 45566666677777666666666667777777777777777888999999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|+
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~--- 338 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS--- 338 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHH----------------------------------------------
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDG---------------------------------------------- 205 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---------------------------------------------- 205 (538)
+++|.++|++|.+||..+||++|.+|++.|++++
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 9999999999999888888888888755555554
Q ss_pred ------------------------HHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044988 206 ------------------------AWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALS 261 (538)
Q Consensus 206 ------------------------A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 261 (538)
|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 44555555556667777777777777778888888888865 58999999999999
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccH
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQE 341 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 341 (538)
+|++.|+++.+.+++..+.+. +..++..++++|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~----g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRT----GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHh----CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999998 99999999999999999999999999999999 9999999999999999999999
Q ss_pred HH---------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 342 AL---------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 342 a~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
|+ .+|..++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 98 789999999999999999999999999777999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 044988 407 MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSW 486 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 486 (538)
.+||..+|++|+.+|..+|+.+.+....+++ .++.|++...|. +|+++|++.|+|++|.++.+.|+++|+++.||++|
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l-~~l~p~~~~~y~-ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHI-FELDPNSVGYYI-LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhhCCCCcchHH-HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 9999999999999999999999999999999 999999999888 99999999999999999999999999999999999
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccCCC
Q 044988 487 VQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGYKPDISELFLGIE 537 (538)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~~p~~~~~~~~~~ 537 (538)
|+++++++.|+.++..||+.++|+..|+++..+|++.||.||++.++++.|
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~ 781 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE 781 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccH
Confidence 999999999999999999999999999999999999999999999886543
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-77 Score=611.72 Aligned_cols=513 Identities=26% Similarity=0.471 Sum_probs=490.9
Q ss_pred CCCccccHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHH
Q 044988 13 TSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIING-FSQKNYILAKLLAFYVTSGYLINAHKVFEKTE----NPSTAIWN 87 (538)
Q Consensus 13 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 87 (538)
...+..+++.++..+.+.|++..|.++|+.|...+ +.|+..+|+.++.+|++.++++.|.+++..|. .||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 33455689999999999999999999999998865 78999999999999999999999999998886 58999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 044988 88 QMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSG 167 (538)
Q Consensus 88 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (538)
.++.+|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 48999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhhcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044988 168 GECGVGCARLLFDDMP----ARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNE 243 (538)
Q Consensus 168 ~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 243 (538)
. .+.+.+++..+. .+|..+|++++.+|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++
T Consensus 239 ~---~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 239 S---ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred c---HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9 999998877665 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCc
Q 044988 244 MRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNT 323 (538)
Q Consensus 244 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 323 (538)
|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+. +.+++..++++|+++|+++|++++|.++|++|.+||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCccHHH---------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Q 044988 324 VSWTSMITGFAKQGYAQEAL---------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDL 388 (538)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 388 (538)
.+||+||.+|++.|+.++|+ .+|..++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999999998 789999999999999999999999999878999999999999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHH
Q 044988 389 FSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAA 468 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 468 (538)
|++.|++++|.+++++|..+|+..+|++|+.+|...|+++.|..+++++ .+..|++...|. .|+++|++.|+|++|.+
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l-~~~~p~~~~~y~-~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL-YGMGPEKLNNYV-VLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-hCCCCCCCcchH-HHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999988899 99999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccCCCC
Q 044988 469 VRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGYKPDISELFLGIEE 538 (538)
Q Consensus 469 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~~p~~~~~~~~~~~ 538 (538)
+++.|+++|+.+.|+++|+.+++.++.|+.++..||+.++++..+.++..+|++.||.||+++++||+||
T Consensus 550 v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 550 VVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred HHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-66 Score=542.62 Aligned_cols=492 Identities=26% Similarity=0.431 Sum_probs=445.6
Q ss_pred CCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHH
Q 044988 12 ATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIR 91 (538)
Q Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 91 (538)
+.+|+..+|..++.+|.+.+....+.+++..+.+.|..++..+++.++..|++.|+++.|.++|++|++||..+||.+|.
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 45667778888888888888888888888888888888888889999999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|+
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~--- 237 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD--- 237 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHH------------------------------------------------------
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGY------------------------------------------------------ 197 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~------------------------------------------------------ 197 (538)
++.|.++|++|.++|..+||++|.+|
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999999887777777776666
Q ss_pred ----------------HhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044988 198 ----------------VKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALS 261 (538)
Q Consensus 198 ----------------~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 261 (538)
++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 4556666777777777778889999999999999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccH
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQE 341 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 341 (538)
+|++.|+++.|.++++.+.+. +..++..++++|+++|+++|++++|.++|++|.++|.++|+++|.+|.+.|+.++
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHhccchHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 044988 342 AL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPM 407 (538)
Q Consensus 342 a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (538)
|+ .+|..++.+|++.|+++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+.+
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 98 67888999999999999999999999988 99999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCCcee
Q 044988 408 KPNDAVLGSLLLGCRIHNNAELASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI-KMGVRKPPGQS 485 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~ 485 (538)
.||..+|+++|.+|++.|+.++|.++|++|. .+..|+..+ |. .++.+|.+.|++++|.++|+.|. +.|+.|+..++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~-~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FI-SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HH-HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 7999999999999999999999999999997 678888888 99 88899999999999999999999 78888876443
Q ss_pred EEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCc
Q 044988 486 WVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGYKPDIS 530 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~~p~~~ 530 (538)
. .++......+..+++++.++ +| .++||..
T Consensus 629 ~--------~lv~~l~r~G~~~eA~~~~~----~m---~~~pd~~ 658 (857)
T PLN03077 629 A--------CVVDLLGRAGKLTEAYNFIN----KM---PITPDPA 658 (857)
T ss_pred H--------HHHHHHHhCCCHHHHHHHHH----HC---CCCCCHH
Confidence 3 23344455666677766654 33 4667654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-62 Score=508.64 Aligned_cols=493 Identities=17% Similarity=0.225 Sum_probs=443.9
Q ss_pred CCccccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHH
Q 044988 14 SSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGF-SQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRG 92 (538)
Q Consensus 14 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 92 (538)
+++...|..++..|.+.|++..|.++|+.|.+.|+ +++...++.++..|.+.|.+++|..+|+.|..||..+|+.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34456788888999999999999999999999995 56778888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCCh
Q 044988 93 HARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGV 172 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 172 (538)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+ +
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~---~ 523 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ---V 523 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC---H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHhhcCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCC------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 044988 173 GCARLLFDDMPA----RSVVSWNSLLKGYVKRGDIDGAWKIFDEMP------HRNVVSWTTMISGCAQNGKSRQALSLFN 242 (538)
Q Consensus 173 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (538)
++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999964 799999999999999999999999999994 4899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--
Q 044988 243 EMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-- 320 (538)
Q Consensus 243 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 320 (538)
+|.+.|+.|+..+|+.+|.+|++.|++++|..+|+.|.+. +..++..+|+.++.+|++.|++++|.++|++|.+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999999985
Q ss_pred --CCcchHHHHHHHHHhcCCccHHH---------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHH
Q 044988 321 --RNTVSWTSMITGFAKQGYAQEAL---------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYG 383 (538)
Q Consensus 321 --~~~~~~~~li~~~~~~~~~~~a~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 383 (538)
||..+|+++|.+|++.|+.++|. .+|+.++.+|++.|++++|.++|++|.+. |+.||..+|+
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 78999999999999999999997 67889999999999999999999999887 9999999999
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHc
Q 044988 384 CMVDLFSRAGLMDEAFSLVQNMP---MKPNDAVLGSLLLGCRI----H-------------------NNAELASQVAQKL 437 (538)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~ 437 (538)
.++.+|++.|++++|.+++++|. ..||..+|+.++..|.+ . +..+.|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999999999999999999984 77999999999876542 1 2246799999999
Q ss_pred h-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHH
Q 044988 438 V-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEI 516 (538)
Q Consensus 438 ~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (538)
. .++.|+..+ |. .++.++.+.+..+.+..+++.|...+..+....+.. .+.+.+.+ ..+++..+
T Consensus 839 ~~~Gi~Pd~~T-~~-~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~--------Li~g~~~~--~~~A~~l~--- 903 (1060)
T PLN03218 839 ISAGTLPTMEV-LS-QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST--------LVDGFGEY--DPRAFSLL--- 903 (1060)
T ss_pred HHCCCCCCHHH-HH-HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH--------HHHhhccC--hHHHHHHH---
Confidence 8 777787777 88 555788888899999999988887776555433332 22222222 24565555
Q ss_pred HHHHHHcCcccCCc
Q 044988 517 TMQAMQEGYKPDIS 530 (538)
Q Consensus 517 ~~~m~~~~~~p~~~ 530 (538)
++|++.|+.|+.+
T Consensus 904 -~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 -EEAASLGVVPSVS 916 (1060)
T ss_pred -HHHHHcCCCCCcc
Confidence 5999999999986
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-61 Score=495.13 Aligned_cols=506 Identities=17% Similarity=0.238 Sum_probs=438.8
Q ss_pred ccCCCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC----CC
Q 044988 6 IIPANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE----NP 81 (538)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~ 81 (538)
.+....-.+++..++..++..|.+.+....|..++..|.. |+..+|+.++.+|++.|++++|.++|+.|. .|
T Consensus 395 ~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p 470 (1060)
T PLN03218 395 DMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470 (1060)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 3444444566778888999999999999999999988864 899999999999999999999999999987 48
Q ss_pred CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHH
Q 044988 82 STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMN 161 (538)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 161 (538)
|..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHhhcCC------CCCchhHHHHHHHHHhcCCHHHHHHHHccCCC----CChHHHHHHHHHHHHc
Q 044988 162 LYLMSGGECGVGCARLLFDDMP------ARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH----RNVVSWTTMISGCAQN 231 (538)
Q Consensus 162 ~~~~~g~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~ 231 (538)
+|++.|+ +++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.
T Consensus 551 a~~k~G~---~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 551 ACGQSGA---VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHCCC---HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 9999999 999999999995 47899999999999999999999999999975 6789999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHH
Q 044988 232 GKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEA 311 (538)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 311 (538)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+. +.+++..+|++|+.+|+++|++++|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHhcC----CCCcchHHHHHHHHHhcCCccHHH---------------HHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 312 YGVFRKMQ----RRNTVSWTSMITGFAKQGYAQEAL---------------LTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 312 ~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.++|++|. .||..+|+.||.+|++.|+.++|. .+|..++.+|++.|+++.|.++|.+|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999995 589999999999999999999998 78999999999999999999999999988
Q ss_pred cCCCccHHHHHHHHHHhhh----c-------------------CChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC
Q 044988 373 WGIKPRIEHYGCMVDLFSR----A-------------------GLMDEAFSLVQNMP---MKPNDAVLGSLLLGCRIHNN 426 (538)
Q Consensus 373 ~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~ 426 (538)
|+.||..+|+.++..|.+ + +..++|..+|++|. +.||..||+.++.+++..+.
T Consensus 784 -Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 784 -GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 999999999999876432 2 12467999999995 78999999999988888899
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce---eEEEECCEEEEEEeCCC-C
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQ---SWVQINGVLHDFVAGDS-T 502 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~ 502 (538)
.+.+..+++.+.....+.+..+|. .|++++.+. .++|..++++|...|+.|+... .|. +.... .
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~-~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~---------~d~~~~~ 930 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLS-TLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIV---------IDAEELP 930 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhH-HHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceE---------EEcccCc
Confidence 999999999885333344444488 888887432 3689999999999999887531 242 11111 1
Q ss_pred CcchHHHHHHHHHHHHHHHHcC-cccCCcccccC
Q 044988 503 YKQASLIYKTLGEITMQAMQEG-YKPDISELFLG 535 (538)
Q Consensus 503 ~~~~~~~~~~l~~~~~~m~~~~-~~p~~~~~~~~ 535 (538)
-+.+.-.+..|-+-.++..+.| --|+...++|+
T Consensus 931 ~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 931 VFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred chhHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 2233444444444334444555 56776665544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-53 Score=433.84 Aligned_cols=453 Identities=14% Similarity=0.177 Sum_probs=411.2
Q ss_pred CCCChhHHHHHHHHHHccCChhHHHHHHhcCC-----CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHH
Q 044988 48 FSQKNYILAKLLAFYVTSGYLINAHKVFEKTE-----NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYS 122 (538)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 122 (538)
...+...|+.++..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 44567789999999999999999999999886 4788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----CCchhHHHHHHHHH
Q 044988 123 FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----RSVVSWNSLLKGYV 198 (538)
Q Consensus 123 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~ 198 (538)
.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|+ +++|.++|++|.+ |+..+|+.++.+|+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGN---YREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999999999995 5899999999999999999 9999999999964 68899999999999
Q ss_pred hcCCHHHHHHHHccCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 044988 199 KRGDIDGAWKIFDEMP----HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKW 274 (538)
Q Consensus 199 ~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 274 (538)
+.|..+.+.+++..+. .+|..+|+.||.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|..
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999988765 4899999999999999999999999999995 5799999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCccHHH-------
Q 044988 275 IHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR----RNTVSWTSMITGFAKQGYAQEAL------- 343 (538)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~------- 343 (538)
+|+.|.+. +..++..+|+.++.+|++.|++++|.+++..|.+ +|..+|++++.+|++.|+.++|.
T Consensus 312 lf~~M~~~----g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 312 LYYEMRDS----GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHc----CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999998 9999999999999999999999999999999875 78999999999999999999998
Q ss_pred ----HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHH
Q 044988 344 ----LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKPNDAVLG 415 (538)
Q Consensus 344 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 415 (538)
.+|+.++.+|++.|+.++|.++|++|.+. |+.||..||+.++.+|.+.|.+++|.++|+.|. ..|+..+|+
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 67899999999999999999999999988 999999999999999999999999999999994 679999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEE
Q 044988 416 SLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHD 495 (538)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 495 (538)
.++.++.+.|++++|.++++++ ...|+..+ |. .|+.+|...|+++.|..+++++.+ +.|.....++ .
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~--~~~p~~~~-~~-~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~-------~ 533 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA--PFKPTVNM-WA-ALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYV-------V 533 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC--CCCCCHHH-HH-HHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchH-------H
Confidence 9999999999999999999987 46676665 88 888999999999999999999975 3343222221 2
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHHHHHcCc--ccCCcccc
Q 044988 496 FVAGDSTYKQASLIYKTLGEITMQAMQEGY--KPDISELF 533 (538)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~--~p~~~~~~ 533 (538)
.+..+...+..+++.+.++ .|++.|+ .|..+|+.
T Consensus 534 L~~~y~~~G~~~~A~~v~~----~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVE----TLKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHHHHhCCCHHHHHHHHH----HHHHcCCccCCCeeEEE
Confidence 2334566777777766664 8999997 47777764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=6.2e-28 Score=260.59 Aligned_cols=443 Identities=14% Similarity=0.078 Sum_probs=245.2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHh
Q 044988 18 LTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHA 94 (538)
Q Consensus 18 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 94 (538)
..+..+...+...++++.|...++...+.... .......++..+.+.|++++|..+++.+. +++..+|..+...+.
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 34555555666666666666666666655422 22334445556666666666666666554 234445666666666
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhH
Q 044988 95 RSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGC 174 (538)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 174 (538)
..|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+ .++
T Consensus 477 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~ 551 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN---EEE 551 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC---HHH
Confidence 6666666666666665532 2233445555556666666666666666666543 3445556666666666666 666
Q ss_pred HHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 175 ARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 175 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
|...++++.+ .+...+..+...+.+.|++++|..+++.+.+ .+..+|..+...|...|++++|...|+++.+..
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655533 1334455555666666666666666665542 334456666666666666666666666665432
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcch
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVS 325 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~ 325 (538)
+.+...+..+..++.+.|+++.|...++.+.+. .|.+...+..++..+...|++++|.++++.+.+ ++...
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 705 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH
Confidence 223444555555556666666666666665554 444455555566666666666666666655543 23344
Q ss_pred HHHHHHHHHhcCCccHHHHH-------------HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhc
Q 044988 326 WTSMITGFAKQGYAQEALLT-------------FLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRA 392 (538)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 392 (538)
+..+...+...|++++|... +..+..++...|++++|.+.++.+.+. .+.+...+..+...|...
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 55555555556666555522 223344455555566666555555543 122455555555555555
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 393 GLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 393 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
|++++|.+.|+++. .+++...++.+...+...|+ ++|+..++++ ....|+++..+. .++.++...|++++|.+++
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA-LKLAPNIPAILD-TLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH-HhhCCCCcHHHH-HHHHHHHHcCCHHHHHHHH
Confidence 66666665555542 22334455555555555555 4555555555 555555555444 5555555555555555555
Q ss_pred HHHHhCC
Q 044988 471 QKMIKMG 477 (538)
Q Consensus 471 ~~m~~~~ 477 (538)
+++.+.+
T Consensus 861 ~~a~~~~ 867 (899)
T TIGR02917 861 RKAVNIA 867 (899)
T ss_pred HHHHhhC
Confidence 5555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.3e-28 Score=261.13 Aligned_cols=443 Identities=13% Similarity=0.042 Sum_probs=357.6
Q ss_pred ccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHH
Q 044988 16 KALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRG 92 (538)
Q Consensus 16 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 92 (538)
+...+..+...+...|+++.|..+++.+.+... .+...+..+...+...|++++|.+.|+...+ .+...+..++..
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 455677788888888999999999988877643 3566777888888889999999998887663 233456667788
Q ss_pred HhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCCh
Q 044988 93 HARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGV 172 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 172 (538)
+.+.|++++|..+++.+.... +++..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|+ +
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~---~ 515 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN---P 515 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC---H
Confidence 888999999999999887653 5567788888888999999999999999888764 4556677888888899999 9
Q ss_pred hHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 173 GCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 173 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
++|...|+++.+ .+..++..+...+.+.|+.++|..+|+++.. .+...+..++..|...|++++|..+++.+.+
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998888764 3567788888888889999999999888753 3455677888888999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCc
Q 044988 247 ARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNT 323 (538)
Q Consensus 247 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~ 323 (538)
. .+.+...+..+..++...|+++.|...++.+.+. .|.+...+..+...|.+.|++++|...|+++.+ .+.
T Consensus 596 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 596 A-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 4 3456778888888888999999999999888876 566677777888889999999999999988765 346
Q ss_pred chHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Q 044988 324 VSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLF 389 (538)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 389 (538)
.++..++..+...|++++|. ..+..+...+...|++++|...|+.+... .|+..++..++.++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHH
Confidence 68888888888999998887 33444566777889999999999988865 56667777888889
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHH
Q 044988 390 SRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVA 467 (538)
Q Consensus 390 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 467 (538)
.+.|++++|.+.++++. .+.+...+..+...+...|++++|.++|+++ .+..|+++..+. .++.++.+.|+ ++|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~-~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV-VKKAPDNAVVLN-NLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHhcCc-HHHH
Confidence 99999999998888873 3345777888888888899999999999998 888888888777 88888999888 8899
Q ss_pred HHHHHHHhC
Q 044988 468 AVRQKMIKM 476 (538)
Q Consensus 468 ~~~~~m~~~ 476 (538)
.+++++...
T Consensus 824 ~~~~~~~~~ 832 (899)
T TIGR02917 824 EYAEKALKL 832 (899)
T ss_pred HHHHHHHhh
Confidence 999888764
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.9e-23 Score=189.98 Aligned_cols=419 Identities=16% Similarity=0.120 Sum_probs=333.6
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhc
Q 044988 19 TTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHAR 95 (538)
Q Consensus 19 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 95 (538)
....|..-.-+.|++.+|.+-....-+.... +....-.+-..+....+.+.....-....+ .-..+|+.+.+.+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 3445555566667777776655554444322 122222222334444444443322211111 233578899999999
Q ss_pred CCCchHHHHHHHHhHhCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCCCCChh
Q 044988 96 SETPEKSVYLYKQMIDKETEP-DEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSN-VFIRTNLMNLYLMSGGECGVG 173 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~ 173 (538)
.|++++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|...++.+ |+ ....+.+.+.+...|+ ++
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr---l~ 201 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR---LE 201 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc---cc
Confidence 99999999999999985 45 56799999999999999999999999998864 54 4466677777888898 99
Q ss_pred HHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044988 174 CARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RN-VVSWTTMISGCAQNGKSRQALSLFNEMRRA 247 (538)
Q Consensus 174 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 247 (538)
+|...+.+..+ | =...|+.|...+-.+|++..|+..|++..+ |+ ...|-.|...|...+.+++|+..|.+...
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 99888877664 3 347899999999999999999999999876 43 24788899999999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCc
Q 044988 248 RVGLD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNT 323 (538)
Q Consensus 248 g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~ 323 (538)
..|+ ...+..+...|...|.++.|.+.|++..+. .|.....|+.|..++-..|++.+|.+.+++... ...
T Consensus 281 -lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 281 -LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred -cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 4565 566778888888999999999999999986 888899999999999999999999999998876 345
Q ss_pred chHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHH
Q 044988 324 VSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDL 388 (538)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 388 (538)
.+.+.|...|...|..++|. ..++.+...|.+.|++++|...+++.. .+.|+ ...|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchH
Confidence 68889999999999999998 445667778888999999999999998 56898 6799999999
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHH
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVY 457 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~ 457 (538)
|-..|+.+.|.+.+.+.. +.|. ...++.|...+...|+..+|+.-++++ ..++||.+.+|. .++.++
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a-LklkPDfpdA~c-Nllh~l 500 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA-LKLKPDFPDAYC-NLLHCL 500 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH-HccCCCCchhhh-HHHHHH
Confidence 999999999999998874 6676 678899999999999999999999999 999999999898 554444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=7.2e-21 Score=206.32 Aligned_cols=437 Identities=13% Similarity=0.054 Sum_probs=312.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHhcCCC
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRGHARSET 98 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 98 (538)
.+...+...|++++|...++.+.+...+........+.......|+.++|++.++++.. | +...+..+...+...|+
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 33456778899999999999988764332221222222223346889999999988773 3 44567788888888999
Q ss_pred chHHHHHHHHhHhCCC------------------C--------------CCcchH---------------------HHHH
Q 044988 99 PEKSVYLYKQMIDKET------------------E--------------PDEYTY---------------------SFLL 125 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~li 125 (538)
.++|+..|+++.+... . |+.... ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999888754210 0 111000 0113
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--CCc---hhHHH--------
Q 044988 126 SVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--RSV---VSWNS-------- 192 (538)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~~~---~~~~~-------- 192 (538)
..+...|++++|...|++.++.. +.+..++..+..+|.+.|+ .++|...|++..+ |+. ..|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~---~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD---RARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34567789999999999998874 4577888999999999999 9999999988765 221 12222
Q ss_pred ----HHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH------
Q 044988 193 ----LLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD-QVALVA------ 258 (538)
Q Consensus 193 ----li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~------ 258 (538)
....+.+.|++++|+..|++... .+...+..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 23456788999999999998764 34557777888999999999999999998874 233 222222
Q ss_pred ------------------------------------HHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHH
Q 044988 259 ------------------------------------ALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMY 302 (538)
Q Consensus 259 ------------------------------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (538)
+...+...|++++|...++...+. .|.+...+..+...|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDL 505 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 223344678889999999988886 677777777899999
Q ss_pred HhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHH------------------------HHHHHhcc
Q 044988 303 ASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFL------------------------GVLSACSH 355 (538)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~------------------------~ll~~~~~ 355 (538)
.+.|++++|...++++.+ | +...+..+...+...++.++|+..+. .....+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998754 3 34444444555566777777763332 23455677
Q ss_pred cCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQV 433 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~ 433 (538)
.|+.++|..+++. . +++...+..+...+.+.|++++|++.|++.. ..| +...+..++..+...|++++|++.
T Consensus 586 ~G~~~eA~~~l~~---~---p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ---Q---PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh---C---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888761 1 3355667778888888899999988888774 344 467788888888888999999998
Q ss_pred HHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 434 AQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
++.+ ....|++...+. .++.++...|++++|.++++++....
T Consensus 660 l~~l-l~~~p~~~~~~~-~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKL-PATANDSLNTQR-RVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHH-hccCCCChHHHH-HHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888 778888887666 78888888899999999888887643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.7e-19 Score=194.15 Aligned_cols=426 Identities=10% Similarity=0.031 Sum_probs=324.9
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHhcCCCchHHHHHHHHhH
Q 044988 34 KTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRGHARSETPEKSVYLYKQMI 110 (538)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 110 (538)
..+...+....+....|... .......+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443332233222 12335567789999999999988763 3 66788899999999999999999999998
Q ss_pred hCCCCCCcc---hHH------------HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 111 DKETEPDEY---TYS------------FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 111 ~~~~~p~~~---~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
+.. |+.. .|. .....+.+.|++++|...++++++.. +.+...+..+..++...|+ +++|
T Consensus 331 ~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~---~~eA 404 (1157)
T PRK11447 331 ALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKD---YAAA 404 (1157)
T ss_pred HhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC---HHHH
Confidence 753 4321 121 22345678999999999999999875 5567788889999999999 9999
Q ss_pred HHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCCCC------------hHHHHHHHHHHHHcCCHHHHHHH
Q 044988 176 RLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRN------------VVSWTTMISGCAQNGKSRQALSL 240 (538)
Q Consensus 176 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~~~~~~a~~~ 240 (538)
++.|++..+ | +...+..+...+. .++.++|..+++.+.... ...+..+...+...|++++|++.
T Consensus 405 ~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 405 ERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999875 3 4456666666664 567899999998876421 12345567788899999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 241 FNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 241 ~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
|++..+. .| +...+..+...+.+.|++++|...++.+.+. .|.+...+..+...+...|+.++|...++++.
T Consensus 484 ~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-----~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 484 QRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-----KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 9999884 45 4556777888899999999999999999875 56666666667777788999999999999886
Q ss_pred CCC----c---------chHHHHHHHHHhcCCccHHH----------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC
Q 044988 320 RRN----T---------VSWTSMITGFAKQGYAQEAL----------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIK 376 (538)
Q Consensus 320 ~~~----~---------~~~~~li~~~~~~~~~~~a~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (538)
... . ..+..+...+...|+.++|. ..+..+...+.+.|++++|+..|+.+.+. .
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~ 633 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---E 633 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 421 1 11223456788889999888 34556778888999999999999999975 5
Q ss_pred c-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc------
Q 044988 377 P-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA------ 447 (538)
Q Consensus 377 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~------ 447 (538)
| +...+..++..|...|++++|++.++... ..|+ ...+..+..++...|++++|.++++++ ....|+++.
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL-IPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH-hhhCccCCcchhhHH
Confidence 5 58889999999999999999999999875 3444 556677788899999999999999999 666555432
Q ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCC
Q 044988 448 GYLALVANVYAAAKRWQDVAAVRQKMIK-MGVR 479 (538)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 479 (538)
.+. .++.++...|++++|++.|++... .|+.
T Consensus 713 ~~~-~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 713 VLR-DAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 344 568899999999999999988863 3443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=8.6e-20 Score=168.83 Aligned_cols=405 Identities=13% Similarity=0.132 Sum_probs=331.2
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC--CC-cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHcc
Q 044988 55 LAKLLAFYVTSGYLINAHKVFEKTEN--PS-TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARC 131 (538)
Q Consensus 55 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 131 (538)
...|..-..+.|++.+|++.....-. |+ ....-.+-..+.+..+.+....--....+. .+--..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 44556666778999999887655442 22 222222334556666666655543333332 234567999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhH---HHHHHHHHhcCCHHHHHH
Q 044988 132 GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSW---NSLLKGYVKRGDIDGAWK 208 (538)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~ 208 (538)
|+++.|...++.+++.. +.....|..+..++...|+ .+.|...|.+..+-|+..| +.+...+...|++.+|..
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999975 4567899999999999999 9999999998887544332 234455566899999999
Q ss_pred HHccCCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhcc
Q 044988 209 IFDEMPH--RN-VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD-QVALVAALSACAEIGDLKLGKWIHSYVEENFS 284 (538)
Q Consensus 209 ~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 284 (538)
.+.+..+ |. .+.|+.|...+-..|+...|+..|++..+ +.|+ ...|..|-..|...+.++.|...|......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 8887553 44 35799999999999999999999999987 5665 567889999999999999999999999886
Q ss_pred CCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCccHHHHHHH--------------
Q 044988 285 VGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN-TVSWTSMITGFAKQGYAQEALLTFL-------------- 347 (538)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~-------------- 347 (538)
.|....++..+.-.|-..|..+.|+..+++..+ |+ +..|+.|..++...|+..+|...|+
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 788888888999999999999999999999876 43 5689999999999999999995554
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIH 424 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 424 (538)
.+..++...|.++.|..+|....+ +.|. ....+.|...|-.+|++++|+..|++. +++|+ ...++.+...|...
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 455667778999999999998884 4676 668899999999999999999999887 57888 57899999999999
Q ss_pred CCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 425 NNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
|+.+.|.+.+.++ ..+.|....++. .|+.+|...|...+|++-++...+-
T Consensus 436 g~v~~A~q~y~rA-I~~nPt~AeAhs-NLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 436 GDVSAAIQCYTRA-IQINPTFAEAHS-NLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hhHHHHHHHHHHH-HhcCcHHHHHHh-hHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999 999999998888 9999999999999999999998864
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.3e-18 Score=175.48 Aligned_cols=385 Identities=12% Similarity=0.037 Sum_probs=253.5
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccC
Q 044988 55 LAKLLAFYVTSGYLINAHKVFEKTE--NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCG 132 (538)
Q Consensus 55 ~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 132 (538)
+....+.+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455666777788888888877655 4666677777777777888888888887777642 223456777777777888
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----------------------------
Q 044988 133 LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---------------------------- 184 (538)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---------------------------- 184 (538)
++++|...+......+-..+.. ...++..+..... ...+...++.-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFA---ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHH---HHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 8887777666554432111111 1111111111101 1222222211111
Q ss_pred -CCc---hhHHHHHHH---HHhcCCHHHHHHHHccCCC-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044988 185 -RSV---VSWNSLLKG---YVKRGDIDGAWKIFDEMPH-----R-NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGL 251 (538)
Q Consensus 185 -~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 251 (538)
.+. ..+..+... ....+++++|.+.|++..+ | ....|+.+...+...|++++|+..|++..+. .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 000 011111111 0223577788888877553 2 3346777777778888888888888887764 44
Q ss_pred C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHH
Q 044988 252 D-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWT 327 (538)
Q Consensus 252 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~ 327 (538)
+ ...|..+...+...|+++.|...++.+.+. .|.+..++..+...+...|++++|...|++..+. +...+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 4 456677777777888888888888888775 5666777777888888888888888888877652 223333
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
. +..++.+.|++++|...|+...+. .| +...++.+..++...|++++|++.|++..
T Consensus 438 ~--------------------la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 438 Q--------------------LGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred H--------------------HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3 334445556888888999988864 45 47789999999999999999999998863
Q ss_pred -CCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 407 -MKPND-A-------VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 407 -~~p~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
..|+. . .++..+..+...|++++|.++++++ ..+.|++...+. .++.++.+.|++++|++.|++..+.
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA-l~l~p~~~~a~~-~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA-LIIDPECDIAVA-TMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHHHHH-HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33431 1 1122222344579999999999999 888999988777 9999999999999999999998753
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.4e-19 Score=173.68 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 295 NNALIHMYASCGEIEEAYGVFRKMQR--RN-TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
+..+...+.+.|++++|...|+++.+ |+ ...+..+...+ ...|++++|.++|+++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------------~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA--------------------LAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH--------------------HHCCCHHHHHHHHHHHHH
Confidence 34455566666666666666666543 11 22222333333 333466666667776664
Q ss_pred hcCCCcc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCccc
Q 044988 372 NWGIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAG 448 (538)
Q Consensus 372 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~ 448 (538)
. .|+ ..+++.++.+|...|++++|.+.++++. ..|+...+..++..+.+.|++++|..+++++ .+..|++..
T Consensus 243 ~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~-l~~~P~~~~- 317 (389)
T PRK11788 243 Q---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQ-LRRHPSLRG- 317 (389)
T ss_pred H---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCcCHHH-
Confidence 4 333 4567888889999999999999998874 5677777788888899999999999999998 778898876
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCc
Q 044988 449 YLALVANVYAA---AKRWQDVAAVRQKMIKMGVRKPPG 483 (538)
Q Consensus 449 ~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 483 (538)
+. .+...+.. .|+.+++..++++|.++++.++|.
T Consensus 318 ~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55 44445443 558999999999999988888874
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.1e-17 Score=170.26 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=101.8
Q ss_pred CCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHH
Q 044988 12 ATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQ 88 (538)
Q Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ 88 (538)
..+.++....-.+......|+..+|..++....... +.+...+..+...+...|++++|..+|++.. +.+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334444455556666666777777777776665522 2334456666677777777777777777643 234445566
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 6666677777777777777776542 22333 6666666667777777777777777653 3344455556666666666
Q ss_pred CCChhHHHHHhhcCCC
Q 044988 169 ECGVGCARLLFDDMPA 184 (538)
Q Consensus 169 ~~~~~~a~~~~~~~~~ 184 (538)
.+.|.+.++....
T Consensus 166 ---~e~Al~~l~~~~~ 178 (765)
T PRK10049 166 ---SAPALGAIDDANL 178 (765)
T ss_pred ---hHHHHHHHHhCCC
Confidence 6666666665554
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2.2e-16 Score=164.12 Aligned_cols=213 Identities=10% Similarity=0.009 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHH
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSM 329 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l 329 (538)
+...+..+..++.. ++.++|...+...... .|.+. ....+...+...|++++|...|+++.. ++...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-----~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-----QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-----CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 34444555555544 6777777777776665 33322 233445555689999999999987765 444556677
Q ss_pred HHHHHhcCCccHHHHHHHHHHH--------------HhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCCh
Q 044988 330 ITGFAKQGYAQEALLTFLGVLS--------------ACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLM 395 (538)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~ll~--------------~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 395 (538)
...+.+.|+.++|...|..++. .+...|++++|...+++..+. .|+...|..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCH
Confidence 7888899999998855433322 233449999999999999855 67888899999999999999
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHH
Q 044988 396 DEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 396 ~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 473 (538)
++|+..+++.. ..|+ ...++.+..++...|++++|+..++++ ....|+++..+. .++.++...|++++|...+++.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A-L~l~P~~~~a~~-nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA-HKGLPDDPALIR-QLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999874 4565 567777888899999999999999999 999999999778 9999999999999999999999
Q ss_pred HhC
Q 044988 474 IKM 476 (538)
Q Consensus 474 ~~~ 476 (538)
.+.
T Consensus 704 l~l 706 (987)
T PRK09782 704 IDD 706 (987)
T ss_pred Hhc
Confidence 864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.9e-17 Score=168.17 Aligned_cols=348 Identities=10% Similarity=-0.044 Sum_probs=252.2
Q ss_pred ccCChhHHHHHHhcCCC------CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHH
Q 044988 64 TSGYLINAHKVFEKTEN------PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREG 137 (538)
Q Consensus 64 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 137 (538)
+..+++.-.-+|...++ .+......++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 44455555555554442 123334556677778888888888888887653 22344556666667778888888
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 138 EQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
...++++.... +.+...+..+...+...|+ .++|...+++..+ | +...+..+...+...|++++|...++.+.
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~---~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ---YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 88888888764 4556677888888888888 8888888888765 3 45677788888888899998888887654
Q ss_pred C--CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc
Q 044988 215 H--RNV-VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 215 ~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
. |+. ..+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++.+.+. .|.+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~ 245 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDG 245 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC
Confidence 2 333 333333 347788999999999998877644445555556667788899999999999998876 5677
Q ss_pred hhHHHHHHHHHHhCCCHHH----HHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHH
Q 044988 292 VSLNNALIHMYASCGEIEE----AYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQ 364 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~ 364 (538)
...+..+...|...|++++ |...|++..+ | +...+..+...+...| ++++|..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--------------------~~~eA~~ 305 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG--------------------QNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--------------------CHHHHHH
Confidence 7888889999999999885 7888888765 3 3345555555555555 6777778
Q ss_pred HHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 365 FFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAV-LGSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 365 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
.+++..+. .|+ ...+..+..+|.+.|++++|.+.|+++. ..|+... +..+..++...|+.++|...|+++ ...
T Consensus 306 ~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a-l~~ 381 (656)
T PRK15174 306 LLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY-IQA 381 (656)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh
Confidence 88887754 454 6677788899999999999999998874 4566544 334566788999999999999999 777
Q ss_pred CCCCc
Q 044988 442 DPEQA 446 (538)
Q Consensus 442 ~p~~~ 446 (538)
.|++.
T Consensus 382 ~P~~~ 386 (656)
T PRK15174 382 RASHL 386 (656)
T ss_pred Chhhc
Confidence 77754
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.5e-18 Score=165.51 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=194.4
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 3456677777777777777643 2234466667777777777777777777666542111100
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
....+..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+
T Consensus 106 --------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 106 --------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 011234444555555555566666655543 345567777777777788888888887777654
Q ss_pred CCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC
Q 044988 249 VGLDQ----VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN 322 (538)
Q Consensus 249 ~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~ 322 (538)
..++. ..+..+...+.+.|+++.|...++.+.+. .|.+...+..+...|.+.|++++|.+.|+++.+ |+
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 33321 23445666677778888888888877775 455566667778888888888888888888774 32
Q ss_pred --cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHH
Q 044988 323 --TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFS 400 (538)
Q Consensus 323 --~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 400 (538)
..+++.++.+|...| ++++|...++.+.+. .|+...+..++..+.+.|++++|.+
T Consensus 247 ~~~~~~~~l~~~~~~~g--------------------~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 247 YLSEVLPKLMECYQALG--------------------DEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred hHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 235667777777776 566666777777654 5776667888999999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHch
Q 044988 401 LVQNM-PMKPNDAVLGSLLLGCRI---HNNAELASQVAQKLV 438 (538)
Q Consensus 401 ~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 438 (538)
+++++ ...|+..+++.++..+.. .|+.+++..+++++.
T Consensus 304 ~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 304 LLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 99876 456898888888887664 458889999999886
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.3e-16 Score=165.72 Aligned_cols=404 Identities=9% Similarity=0.043 Sum_probs=291.7
Q ss_pred CCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 044988 49 SQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLL 125 (538)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 125 (538)
+.++....-.+.+....|+.++|+++|.+..+ .+...+..+...+.+.|++++|..+|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44667777788888999999999999988764 333458899999999999999999999998752 33456777888
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCC
Q 044988 126 SVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGD 202 (538)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 202 (538)
..+...|++++|...+++..+.. +.+.. +..+..++...|+ .++|...+++..+ | +...+..+...+...|.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 88999999999999999999874 55566 8889999999999 9999999999876 3 45566778888889999
Q ss_pred HHHHHHHHccCCC-CCh------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHH
Q 044988 203 IDGAWKIFDEMPH-RNV------VSWTTMISGCA-----QNGKS---RQALSLFNEMRRA-RVGLDQV-ALV----AALS 261 (538)
Q Consensus 203 ~~~A~~~~~~m~~-~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~li~ 261 (538)
.+.|++.++.... |+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999999998775 221 01222222222 12234 7788899988854 2233321 111 1134
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCC--CcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-------cchHHHHHHH
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGRE--PVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN-------TVSWTSMITG 332 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~li~~ 332 (538)
++...|+.++|...|+.+.+. +. |..... .+...|...|++++|...|+++.+.+ ......+..+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAE----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhcc----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 456779999999999998876 42 333333 36788999999999999999886532 1245556678
Q ss_pred HHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc---HHHHHHHHHHhhhcCChHHHHHHHHhCC-CC
Q 044988 333 FAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR---IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK 408 (538)
Q Consensus 333 ~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 408 (538)
+...|++++|...+..+...-... ..++. .. .-.|+ ...+..+...+...|++++|+++++++. ..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~------~~~~~-~~---~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPF------LRLYG-SP---TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCce------EeecC-CC---CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999987777666542111 01111 11 11344 2345566777778888888888888763 23
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 409 P-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 409 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
| +...+..+...+...|++++|++.++++ ....|++...+. .++..+.+.|++++|..+++++.+.
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a-l~l~Pd~~~l~~-~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKA-EVLEPRNINLEV-EQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhCCCChHHHH-HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 3566777777788888888888888888 778888877666 7777788888888888888887653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.1e-17 Score=165.12 Aligned_cols=354 Identities=12% Similarity=0.027 Sum_probs=275.8
Q ss_pred HhcCCCchHHHHHHHHhHhC--CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCC
Q 044988 93 HARSETPEKSVYLYKQMIDK--ETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGEC 170 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 170 (538)
+.++.+|+.-.-.|..-.++ .-.-+..-...++..+.+.|+++.|..+++..+... +-+......++.+....|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~-- 91 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQ-- 91 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCC--
Confidence 35666777766666655432 112344456677888899999999999999999875 4445566777788888999
Q ss_pred ChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044988 171 GVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 171 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 244 (538)
.+.|...|+++.+ | +...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+
T Consensus 92 -~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 -PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999999875 3 567788888999999999999999999764 4 4567888999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---C
Q 044988 245 RRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---R 321 (538)
Q Consensus 245 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~ 321 (538)
......+. ..+..+ ..+...|++++|...++.+.+. ..+.+......+...+.+.|++++|...+++..+ .
T Consensus 171 ~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~----~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 171 AQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARALLPF----FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 76543332 233233 3478899999999999998776 3333344445567888999999999999998875 2
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHH
Q 044988 322 NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFS 400 (538)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 400 (538)
+...+..+...+...|++++|. ..|...|++..+. .| +...+..+...+.+.|++++|..
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~----------------~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAK----------------LQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhH----------------HHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666777777777655431 3578888888854 56 47789999999999999999999
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 401 LVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 401 ~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
.+++.. ..|+ ...+..+..++...|++++|...++++ ....|++...+. .++.++...|++++|.+.|++..+..
T Consensus 306 ~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a-l~~~P~~~~~~~-~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 306 LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL-AREKGVTSKWNR-YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCccchHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999874 4455 566777888899999999999999999 888998876455 67888999999999999999987643
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1e-15 Score=155.98 Aligned_cols=442 Identities=12% Similarity=0.020 Sum_probs=309.7
Q ss_pred CCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHH-H
Q 044988 10 NPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWN-Q 88 (538)
Q Consensus 10 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 88 (538)
.+..|..+.+...-+-...+.|++..|...+++..+....-.+.++ .++..+...|+.++|+..+++...|+...+. .
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 3333434444445555667899999999999999987644223444 8888899999999999999998876544443 3
Q ss_pred H--HHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 044988 89 M--IRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMS 166 (538)
Q Consensus 89 l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (538)
+ ...+...|++++|+++|+++.+.. +-|...+..++..+...++.++|.+.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3 457778899999999999999864 334567777888899999999999999999876 45555554444444444
Q ss_pred CCCCChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCC-CChHHHHHH----HHHHHH--------
Q 044988 167 GGECGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH-RNVVSWTTM----ISGCAQ-------- 230 (538)
Q Consensus 167 g~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~l----i~~~~~-------- 230 (538)
++ ..+|+..++++.+ | +...+..+..++.+.|-...|.++..+-+. -+...+..+ +.-.++
T Consensus 183 ~~---~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 183 DR---NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred ch---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 44 6569999998875 3 566778888999999999999999988663 111111110 111111
Q ss_pred -cCC---HHHHHHHHHHHHH-CCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 231 -NGK---SRQALSLFNEMRR-ARVGLDQV-----ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 231 -~~~---~~~a~~~~~~m~~-~g~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
..+ .+.|+.-++.+.. .+-.|... ...-.+-++...++..++.+.++.+... +.+....+-..+.+
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~----~~~~P~y~~~a~ad 335 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE----GYKMPDYARRWAAS 335 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc----CCCCCHHHHHHHHH
Confidence 122 3456666666554 23334322 2223455677889999999999999887 66655566678999
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC------
Q 044988 301 MYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG------ 374 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------ 374 (538)
+|...+.+++|..+|..+..++..+. .....+.....|.-++...+++++|..+++.+.+...
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~-----------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTF-----------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhcccccc-----------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 99999999999999999865332110 0000001123344455555677777888888776311
Q ss_pred ------CCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC
Q 044988 375 ------IKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 375 ------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
..|| ...+..++..+...|++.+|++.++++. .+-|......+...+...|.+.+|++.++.+ ..+.|++
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a-~~l~P~~ 483 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV-ESLAPRS 483 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhhCCcc
Confidence 1223 3345566778888999999999998884 3445777788888899999999999999888 8889998
Q ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 446 AAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+.. ..+.++...|+|++|..+.+.+.+
T Consensus 484 ~~~~~-~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 484 LILER-AQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHH-HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 88777 888888899999999888877754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5.9e-16 Score=157.96 Aligned_cols=397 Identities=10% Similarity=-0.035 Sum_probs=271.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcC
Q 044988 20 TRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARS 96 (538)
Q Consensus 20 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 96 (538)
+......+...++++.|...|+..++. .|++..|..+..+|.+.|++++|++.++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 335556778889999999999998875 46778899999999999999999999988763 3455788899999999
Q ss_pred CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHH-------------HHH------------h--CC
Q 044988 97 ETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGR-------------VLA------------S--GY 149 (538)
Q Consensus 97 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-------------~~~------------~--~~ 149 (538)
|++++|+.-|......+ ..+......++..+........+...++. ... . ..
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999998887665432 11111111111111100000111111000 000 0 00
Q ss_pred CCc-hhHHhHHHHHH---HhcCCCCChhHHHHHhhcCCCC------CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CC
Q 044988 150 CSN-VFIRTNLMNLY---LMSGGECGVGCARLLFDDMPAR------SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RN 217 (538)
Q Consensus 150 ~~~-~~~~~~l~~~~---~~~g~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 217 (538)
.+. ...+..+...+ ...++ +++|.+.|+...+. ....|+.+...+...|++++|+..|++..+ |+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~---y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADES---YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhh---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 000 00011111111 12245 88888888877642 345677888888889999999999988654 43
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 218 -VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 218 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
...|..+...+...|++++|...|++..+.. +-+...+..+...+...|+++.|...++...+. .|.+...+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~~~ 437 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFSHI 437 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHHHH
Confidence 4578888888889999999999999887753 334677888888888999999999999998886 677777788
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+..++.+.|++++|...|++..+ .+...|+.+...+...|++++|+..|...+...-.. .
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-------------~--- 501 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-------------K--- 501 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-------------c---
Confidence 888999999999999999988765 356788888899999999999986665554321110 0
Q ss_pred CCCccH-HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC
Q 044988 374 GIKPRI-EHYGCMVDLFSRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 374 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
+..++. ..++.....+...|++++|.+++++. ...|+ ...+..+...+.+.|++++|++.|+++ .++.+..
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A-~~l~~~~ 575 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA-AELARTE 575 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHhccH
Confidence 111221 12233333444568999999999875 34455 456788888899999999999999998 6666553
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.6e-16 Score=154.95 Aligned_cols=433 Identities=13% Similarity=0.070 Sum_probs=304.6
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCC------cchHHHHHHHHhcCCCchHHHHHH
Q 044988 33 TKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPS------TAIWNQMIRGHARSETPEKSVYLY 106 (538)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~ 106 (538)
+..+.+.+....... +.+|.+.+.|.+.|...|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344444444444333 3367778888888888888888888877665322 234667888888889999998888
Q ss_pred HHhHhCCCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CCCChhHHHHHhhcCC
Q 044988 107 KQMIDKETEPDEYT--YSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSG-GECGVGCARLLFDDMP 183 (538)
Q Consensus 107 ~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~a~~~~~~~~ 183 (538)
.+..+. .|+..+ +--|...+...|+++.+...|+...+.. +.+..+...|...|...+ ..-..+.|..++.+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777654 455543 4456777888889999988888888874 556677777777787774 1112677777777776
Q ss_pred CC---CchhHHHHHHHHHhcCC------HHHHHHHHcc-CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC
Q 044988 184 AR---SVVSWNSLLKGYVKRGD------IDGAWKIFDE-MPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRA---RVG 250 (538)
Q Consensus 184 ~~---~~~~~~~li~~~~~~g~------~~~A~~~~~~-m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~ 250 (538)
++ |...|-.+...+....- +..|..++.. +....+...|.+...+...|++.+|...|...... -..
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 54 55566665555544332 3334433333 22366778888988899999999999999988764 223
Q ss_pred CCH------HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---C
Q 044988 251 LDQ------VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---R 321 (538)
Q Consensus 251 p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~ 321 (538)
+|. .+--.+....-..++.+.|...|..+.+. .|.-+..|-.++-.....+...+|...++.... .
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-----hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-----HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-----CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 333 23334555566778999999999999886 777777765555444455788889998888765 4
Q ss_pred CcchHHHHHHHHHhcCCccHHHHH--------------HH--HHHHHhc------------ccCcHHHHHHHHHHhhhhc
Q 044988 322 NTVSWTSMITGFAKQGYAQEALLT--------------FL--GVLSACS------------HGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~--------------~~--~ll~~~~------------~~~~~~~a~~~~~~~~~~~ 373 (538)
++..++.+...+.+...+..|... |. .|.+.|. ..+..++|.++|.++.+.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 666777777777777666666522 22 2222222 124578899999998864
Q ss_pred CCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHH
Q 044988 374 GIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLA 451 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 451 (538)
-+.|...-|-+.-.++..|++.+|..+|..+. ...+..+|-.+..+|...|++..|++.|+.......+.+......
T Consensus 642 -dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 -DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred -CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 24478888999999999999999999999885 223456788999999999999999999999874444444332334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.|+.++.+.|++.+|.+.+......
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 8999999999999999998877654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=4.6e-14 Score=147.08 Aligned_cols=438 Identities=8% Similarity=-0.038 Sum_probs=313.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc-cCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCc
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVT-SGYLINAHKVFEKTENPSTAIWNQMIRGHARSETP 99 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 99 (538)
..+...+...++.+.+..++..+.+.+.. +......|..+|.. .++ +++..+++...+.++..+..+...|.+.|+.
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCH
Confidence 33488899999999999999999999744 45667777778887 466 8888887765566888899999999999999
Q ss_pred hHHHHHHHHhHhCCCC-CCcchHHHH------------------------------HHHHHccCCcHHHHHHH-------
Q 044988 100 EKSVYLYKQMIDKETE-PDEYTYSFL------------------------------LSVCARCGLFREGEQVH------- 141 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------i~~~~~~~~~~~a~~~~------- 141 (538)
++|..+++++...... |...+|.-+ +..+.+.++++.++++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 9999999998653211 333333222 22333444444443331
Q ss_pred ----------------------HHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC-C-----CchhHHHH
Q 044988 142 ----------------------GRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA-R-----SVVSWNSL 193 (538)
Q Consensus 142 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~-~-----~~~~~~~l 193 (538)
..|.+. .+-+....-.+.......|+ .++|.++|+.... + +....+-+
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQ---SREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccc---HHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 111111 02233344444445566777 8888888887765 2 22234456
Q ss_pred HHHHHhcCC---HHHHHHHHc-------------------------cCCC---C--ChHHHHHHHHHHHHcCCHHHHHHH
Q 044988 194 LKGYVKRGD---IDGAWKIFD-------------------------EMPH---R--NVVSWTTMISGCAQNGKSRQALSL 240 (538)
Q Consensus 194 i~~~~~~g~---~~~A~~~~~-------------------------~m~~---~--~~~~~~~li~~~~~~~~~~~a~~~ 240 (538)
+..|.+.+. ..++..+-. .... + +...|..+..++.. +++++|+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 667766655 333333311 1111 2 45677777777776 788899998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 241 FNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 241 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
|.+.... .|+......+...+...|+++.|...++.+... ++....+..+...+.+.|+.++|...+++..+
T Consensus 499 ~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 499 WLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8887764 466655444555556899999999999987553 33333455778888999999999999998876
Q ss_pred CCcchHHHH---HHHHHhcCCccHHH-------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHH
Q 044988 321 RNTVSWTSM---ITGFAKQGYAQEAL-------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYG 383 (538)
Q Consensus 321 ~~~~~~~~l---i~~~~~~~~~~~a~-------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 383 (538)
.++...... ...+...|++++|. ..+..+..++.+.|++++|...+++..+. .| +...++
T Consensus 571 l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~ 647 (987)
T PRK09782 571 RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQA 647 (987)
T ss_pred cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 443333333 23344459999998 34555567888999999999999999865 66 477888
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC
Q 044988 384 CMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK 461 (538)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 461 (538)
.+..++...|+.++|++.+++.. ..|+ ...+..+..++...|++++|+..++++ ..+.|+...... ..++...+..
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A-l~l~P~~a~i~~-~~g~~~~~~~ 725 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV-IDDIDNQALITP-LTPEQNQQRF 725 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCCchhhh-hhhHHHHHHH
Confidence 99999999999999999999874 4454 678889999999999999999999999 999999988677 8889999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 044988 462 RWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 462 ~~~~A~~~~~~m~~~~~ 478 (538)
+++.|.+-+++....+.
T Consensus 726 ~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 726 NFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 99999999888776544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=9.6e-15 Score=148.99 Aligned_cols=428 Identities=10% Similarity=0.018 Sum_probs=307.8
Q ss_pred cccccCCCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--
Q 044988 3 VEEIIPANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN-- 80 (538)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 80 (538)
+.++++.+|..++... .++..+...|+.++|...++..... .+........+...|...|++++|+++|+++.+
T Consensus 57 L~qaL~~~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 57 LQEESKAGPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHhhCccchhhHH---HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556667776654323 7788888889999999999998821 122333444446688889999999999999873
Q ss_pred -CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHH
Q 044988 81 -PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNL 159 (538)
Q Consensus 81 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (538)
.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+.. +.+...+..+
T Consensus 133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~ 209 (822)
T PRK14574 133 PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNH 209 (822)
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34556777788899999999999999999875 5666666555444544566666999999999985 6678888999
Q ss_pred HHHHHhcCCCCChhHHHHHhhcCCCC-Cchh--H------HHHHHHH-----HhcCC---HHHHHHHHccCCC-----CC
Q 044988 160 MNLYLMSGGECGVGCARLLFDDMPAR-SVVS--W------NSLLKGY-----VKRGD---IDGAWKIFDEMPH-----RN 217 (538)
Q Consensus 160 ~~~~~~~g~~~~~~~a~~~~~~~~~~-~~~~--~------~~li~~~-----~~~g~---~~~A~~~~~~m~~-----~~ 217 (538)
+.+..+.|- ...|.++..+-+.- +... + ..+++.- ....+ .+.|+.-++.+.. |.
T Consensus 210 ~~~l~~~~~---~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 210 LEILQRNRI---VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHcCC---cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 999999999 88999888876631 1111 1 1111110 01122 3344444444332 32
Q ss_pred hH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCC-CCCcc
Q 044988 218 VV-----SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVG-REPVL 291 (538)
Q Consensus 218 ~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 291 (538)
.. ..--.+-++...|++.+|++.|+.+...|.+....+-..+..+|...+++++|..++..+....... ..+.+
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 21 1223456778899999999999999999877667788899999999999999999999997752110 12334
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHH-HHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMI-TGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
......|.-+|...+++++|..+++++.+..+.-+.... ..-.-+.++. ..+..++..+...|++.+|++.++++.
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~---~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI---EGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444567889999999999999999999863221000000 0000111222 334455666777889999999999998
Q ss_pred hhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 371 QNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 371 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.. .| |......+.+.+...|.+.+|.+.++... ..|+ ..+....+.++...+++++|..+.+.+ .+..|++..
T Consensus 444 ~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l-~~~~Pe~~~ 519 (822)
T PRK14574 444 ST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV-ISRSPEDIP 519 (822)
T ss_pred Hh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhhCCCchh
Confidence 65 55 79999999999999999999999998764 4555 556667778889999999999999999 999999987
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=5.4e-12 Score=118.59 Aligned_cols=447 Identities=12% Similarity=0.094 Sum_probs=281.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC--------CCCcchHHHHHHHH
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE--------NPSTAIWNQMIRGH 93 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~ 93 (538)
-|..++++...++.|..+++...+. ++.++.+|..-...--.+|+.+....+.++-. +.+...|-.=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455566666666667676666554 44466666666665666666666666665432 13444455555555
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPD--EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
-..|..--+..+......-|+.-. ..||..-...|.+.+.++-|..+|...++- ++.+...|......--..|.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt--- 565 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT--- 565 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc---
Confidence 555666666666666655554321 236666666677777777777777766665 34555666666666666666
Q ss_pred hhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044988 172 VGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEMR 245 (538)
Q Consensus 172 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (538)
.++...+|.+... .....|-...+.+-..|+...|..++...-+ | +...|-.-+.....+.+++.|..+|.+..
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777666654 2345566666666777777777777766543 2 33456666666677777777877777665
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCc
Q 044988 246 RARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNT 323 (538)
Q Consensus 246 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~ 323 (538)
. ..|+...|..-+..---.+..++|.++++...+. +|.....|..+.+.+-+.++++.|.+.|..=.+ |+.
T Consensus 646 ~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 646 S--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 5 4566666655555555567777777777777775 677777777777777777777777777765544 433
Q ss_pred -chHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Q 044988 324 -VSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDL 388 (538)
Q Consensus 324 -~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 388 (538)
..|-.+...--+.|....|. ..|...+..-.+.|..+.|..+..+..+.+ +.+...|..-|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHh
Confidence 33444444334444333333 334444444455555555555555555431 2234445555555
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHH
Q 044988 389 FSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAA 468 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 468 (538)
..+.++-......+++.. -|+...-.+...+....++++|.+.|++. ....|+...+|. .+...+.+.|.-++-.+
T Consensus 797 e~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ra-vk~d~d~GD~wa-~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERA-VKKDPDNGDAWA-WFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHH-HccCCccchHHH-HHHHHHHHhCCHHHHHH
Confidence 555555444444444442 35555556666777888999999999999 999999999888 88888999999888888
Q ss_pred HHHHHHhCCCCCCCceeEEE
Q 044988 469 VRQKMIKMGVRKPPGQSWVQ 488 (538)
Q Consensus 469 ~~~~m~~~~~~~~~~~~~~~ 488 (538)
++++... -.|.-|..|+.
T Consensus 873 v~~~c~~--~EP~hG~~W~a 890 (913)
T KOG0495|consen 873 VLKKCET--AEPTHGELWQA 890 (913)
T ss_pred HHHHHhc--cCCCCCcHHHH
Confidence 9888776 34666778853
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=3.6e-13 Score=132.03 Aligned_cols=385 Identities=11% Similarity=0.086 Sum_probs=169.8
Q ss_pred CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHH
Q 044988 82 STAIWNQMIRGHARSETPEKSVYLYKQMIDKETE--PDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNL 159 (538)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (538)
|+...+.|.+-|.-.|+++.++.+.+.+...... .-...|-.+.++|-..|++++|...|.+..+..-..-...+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4444444444444455555555555544432100 11223444445555555555555555444443211112233344
Q ss_pred HHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHHHHHhcC----CHHHHHHHHccCCCC---ChHHHHHHHHHHH
Q 044988 160 MNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLKGYVKRG----DIDGAWKIFDEMPHR---NVVSWTTMISGCA 229 (538)
Q Consensus 160 ~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 229 (538)
...|.+.|+ ++.+...|+.+... +..+...+...|...+ ..+.|..++.+..++ |...|-.+...+.
T Consensus 349 gQm~i~~~d---le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGD---LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhch---HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 445555555 55555555544431 2333333333333332 334444444443332 2334444444333
Q ss_pred HcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc----CCC-CCcchhHHHHHHH
Q 044988 230 QNGKSRQALSLFNEMR----RARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFS----VGR-EPVLVSLNNALIH 300 (538)
Q Consensus 230 ~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~~~~l~~ 300 (538)
.. +...++.+|.... ..+-.+.....+.+...+...|+++.|...|........ ... ...++++--.+..
T Consensus 426 ~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 32 2222244443332 233334445555555555555555555555555444311 000 0111212223444
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------CCccHHH--------------HHHHHHHHHhcccCcH
Q 044988 301 MYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ-------GYAQEAL--------------LTFLGVLSACSHGGFV 359 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-------~~~~~a~--------------~~~~~ll~~~~~~~~~ 359 (538)
.+-..++++.|.+.|..+.+..+. .|.+|.+. +...+|. ..+..+...+.....+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 444555555555555555442211 11122221 2222332 1222222233333333
Q ss_pred HHHHHHHHHhhhhcCCCccHHHHHHHHHHhhh------------cCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 044988 360 DEGRQFFECMNQNWGIKPRIEHYGCMVDLFSR------------AGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHN 425 (538)
Q Consensus 360 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~ 425 (538)
..|..-|..+.+.....+|..+.-+|...|.. .+..++|+++|.++. . +-|...-|.+.-.++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 44444333333322223444444444443331 223556666665542 2 233455555555666777
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++..|..+|.+. .+-..+...+|. .++.+|..+|+|-.|+++|+....+
T Consensus 661 ~~~~A~dIFsqV-rEa~~~~~dv~l-Nlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 661 RFSEARDIFSQV-REATSDFEDVWL-NLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred CchHHHHHHHHH-HHHHhhCCceee-eHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776 333334445566 6667777777777777777665543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=8.4e-12 Score=111.61 Aligned_cols=427 Identities=12% Similarity=0.113 Sum_probs=264.3
Q ss_pred CCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc--cCChhHH-HH-----------------
Q 044988 14 SSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVT--SGYLINA-HK----------------- 73 (538)
Q Consensus 14 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a-~~----------------- 73 (538)
+.+..+-+.|+... ..+....+.-+++.|.+.|++.++.+--.|+..-+- +.++.-| .+
T Consensus 113 ~~~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 113 PLQVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred chhhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 33444566676665 456678888999999999999888877777654332 2221111 11
Q ss_pred ------HHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 044988 74 ------VFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLAS 147 (538)
Q Consensus 74 ------~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 147 (538)
++-+..+.+..+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.- ...++++.+|...
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQ 267 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHh
Confidence 222222345567777777777777777777777777766667777777777766432 2226677777777
Q ss_pred CCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC----CCChHHHHH
Q 044988 148 GYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMP----HRNVVSWTT 223 (538)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ 223 (538)
.+.||..|+|+++.+..+.|+ ++.|.+ .|.+++.+|. +|...+|..
T Consensus 268 km~Pnl~TfNalL~c~akfg~---F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~ 317 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGK---FEDARK---------------------------AALQILGEMKEIGVEPSLSSYHL 317 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcc---hHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHH
Confidence 777777777777777777776 655543 2344555554 488888888
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHHHC--C--C---CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc---
Q 044988 224 MISGCAQNGKSRQ-ALSLFNEMRRA--R--V---GL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL--- 291 (538)
Q Consensus 224 li~~~~~~~~~~~-a~~~~~~m~~~--g--~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 291 (538)
+|..+++.++..+ |..++.+.+.. | + .| |...|...+..|.+..+.+.|.++.............+++
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 8888888877644 55555665542 2 2 23 5566788888899999999999988877654322223333
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKMQR----RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFE 367 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~ 367 (538)
...|..+....|.....+.-...|+.|.. |+..+...++.+....|+++-....|...+ .+.+.-+-+..++++.
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHH
Confidence 34566778888888889999999998875 566666666777666666655444443332 2232333344455555
Q ss_pred HhhhhcCCCccHHHHHHHHHHhhhcC-ChHHH-HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch--hccC
Q 044988 368 CMNQNWGIKPRIEHYGCMVDLFSRAG-LMDEA-FSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV--AEID 442 (538)
Q Consensus 368 ~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A-~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~ 442 (538)
.+... ...|+...-..+-.+.+++- ++.++ ...-.+++ .+-.....+.....+.+.|..++|.+++..+. ..-.
T Consensus 477 ~L~~~-k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 477 LLARD-KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred HHhcC-CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 55544 33443332222222222211 11111 11112222 23445666777777889999999999998873 2233
Q ss_pred CCCcccHH--HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 443 PEQAAGYL--ALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 443 p~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
|..+. .. .-+.+.-.+.++...|+.+++-|...+.
T Consensus 556 p~~p~-lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPL-LNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 44443 22 0234555667788889999998877665
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.1e-14 Score=126.95 Aligned_cols=427 Identities=12% Similarity=0.097 Sum_probs=274.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHccCChhHHHHHHhcCCC--CC------cchHHHHHHHH
Q 044988 23 IFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILA-KLLAFYVTSGYLINAHKVFEKTEN--PS------TAIWNQMIRGH 93 (538)
Q Consensus 23 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~ 93 (538)
|...|.......+|...++.+++...-|+...+. .+-+.+.+...+.+|+++++-... |+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3444555667788889999999888777765443 355778888899999998864331 22 22455566678
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc------------hhHHhH---
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSN------------VFIRTN--- 158 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~--- 158 (538)
.+.|+++.|+..|+...+. .||-.+--.|+-++...|+.++..+.|.+|+.....|| ....+.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 8999999999999998875 58877666666666677999999999999987533332 222221
Q ss_pred --HHHHHHhcCCCCChhH----HHHHhhcCCCCCch-------------hHHH--------HHHHHHhcCCHHHHHHHHc
Q 044988 159 --LMNLYLMSGGECGVGC----ARLLFDDMPARSVV-------------SWNS--------LLKGYVKRGDIDGAWKIFD 211 (538)
Q Consensus 159 --l~~~~~~~g~~~~~~~----a~~~~~~~~~~~~~-------------~~~~--------li~~~~~~g~~~~A~~~~~ 211 (538)
.+.-+-+... ...++ +.++..-...|+.. .+.- -..-+.+.|+++.|.++++
T Consensus 365 nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1122222221 00122 22222222233211 0000 1123588999999999888
Q ss_pred cCCCCChHHHHH------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccC
Q 044988 212 EMPHRNVVSWTT------MISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSV 285 (538)
Q Consensus 212 ~m~~~~~~~~~~------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 285 (538)
-..+.|..+-.. ++..+...+++..|..+-+...... .-+....+.--......|++++|...|.+....
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--- 519 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--- 519 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---
Confidence 777644433221 1222222335666666655554321 112222222222233467777777777777665
Q ss_pred CCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH--------------HHHHH
Q 044988 286 GREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL--------------LTFLG 348 (538)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~--------------~~~~~ 348 (538)
........| .+.-.+...|++++|.+.|-++.. .+......+.+.|-...+...|+ .+...
T Consensus 520 -dasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 -DASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred -chHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 333333344 344556667777777777766543 45555556666666666666665 45566
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCC
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGC-RIHNN 426 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~~~ 426 (538)
+...|.+.|+-..|.+++-.--+ -++.|..+..-|..-|....-+++++.+|++.. ++|+..-|..++..| .+.|+
T Consensus 598 l~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 67777788888888888765443 234478888888888999999999999999885 789999999888765 67899
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCC
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKR 462 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 462 (538)
+++|+.+++.. ..-.|.+..... .|+.++...|-
T Consensus 676 yqka~d~yk~~-hrkfpedldclk-flvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDI-HRKFPEDLDCLK-FLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH-HHhCccchHHHH-HHHHHhccccc
Confidence 99999999999 888899988666 78888777663
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=5.4e-11 Score=116.31 Aligned_cols=438 Identities=12% Similarity=0.071 Sum_probs=278.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHh---cCCCCCcchHHHHHHHHhcCCCchH
Q 044988 25 SLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFE---KTENPSTAIWNQMIRGHARSETPEK 101 (538)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~ 101 (538)
..+-..|+.+.|..++..+.+..+ .....|..|..+|-..|+.+++...+- .+.+.|...|..+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 334445889999999988888753 367788888899999999888888764 3345566778888888888888999
Q ss_pred HHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH----HhHHHHHHHhcCCCCChhHHHH
Q 044988 102 SVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFI----RTNLMNLYLMSGGECGVGCARL 177 (538)
Q Consensus 102 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~~~~a~~ 177 (538)
|.-+|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..- --..+..+...++ -+.|.+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAK 301 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence 988888888764 44544555556677888888888888888887643222222 2233445666666 677777
Q ss_pred HhhcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHccCCC-------------------------------------
Q 044988 178 LFDDMPA-----RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH------------------------------------- 215 (538)
Q Consensus 178 ~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------------------- 215 (538)
.++.... -+...++.++..+.+...++.|......+..
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 7666554 1344566666666665555555544322210
Q ss_pred ------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 216 ------------------------------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 216 ------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
.++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|-.+..++..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 12234666778889999999999999999876555567788889999999
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcc------------hHHHHHHHH
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTV------------SWTSMITGF 333 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------------~~~~li~~~ 333 (538)
.|..+.|...|..+... .|.+..+-..|...+.+.|+.++|.+.+..+..||.. ..-.....+
T Consensus 462 l~e~e~A~e~y~kvl~~-----~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL-----APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999986 7777777788999999999999999999998765521 122233455
Q ss_pred HhcCCccHHHHHHHHHHHHhc-------------------------------------ccCcHHHHHHHHHH-----hhh
Q 044988 334 AKQGYAQEALLTFLGVLSACS-------------------------------------HGGFVDEGRQFFEC-----MNQ 371 (538)
Q Consensus 334 ~~~~~~~~a~~~~~~ll~~~~-------------------------------------~~~~~~~a~~~~~~-----~~~ 371 (538)
.+.|+.++=+.+-..|+.-+. +.++.....+-... ...
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 666666664422222222111 11111100000000 000
Q ss_pred hcCCCcc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCH-H-HH-HHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 372 NWGIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP-----MKPND-A-VL-GSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 372 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~-~-~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
..++..+ -..+.-++..+++.+++++|+.+...+. ..++. . .+ ...+.++...+++..|...++.+. ..
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i-~~ 695 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI-TQ 695 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH
Confidence 0022222 1244566777888888888888887664 12222 1 22 233445677788888888888774 32
Q ss_pred -----CCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 442 -----DPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 442 -----~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.|.....|. +..+...+.|+-.--.+++....
T Consensus 696 ~~~~~~~~q~~l~n-~~~s~~~~~~q~v~~~R~~~~~~ 732 (895)
T KOG2076|consen 696 FQFYLDVYQLNLWN-LDFSYFSKYGQRVCYLRLIMRLL 732 (895)
T ss_pred HhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444 34445555554444444444433
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.3e-12 Score=114.12 Aligned_cols=350 Identities=14% Similarity=0.160 Sum_probs=245.9
Q ss_pred CCCChhHHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHH
Q 044988 48 FSQKNYILAKLLAFYVTSGYLINAHKVFEKTE----NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSF 123 (538)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 123 (538)
.+.++.++..+|...++....+.|.+++++.. +.+..+||.+|.+-. +..-.++..+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 44578899999999999999999999998876 356778888887643 3333889999999999999999999
Q ss_pred HHHHHHccCCcHH----HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhc----CC----CC----Cc
Q 044988 124 LLSVCARCGLFRE----GEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDD----MP----AR----SV 187 (538)
Q Consensus 124 li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~----~~----~~----~~ 187 (538)
++++..+.|+++. |.+++.+|++.|+.|...+|..++..+++.+++.+ .|...+.+ +. +| |.
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k--~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK--VASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh--hhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999998765 56788999999999999999999999999998322 23333332 22 11 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHccCCC--------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044988 188 VSWNSLLKGYVKRGDIDGAWKIFDEMPH--------RN---VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVAL 256 (538)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 256 (538)
..+..-+..|....+.+-|.++-.-... ++ ..-|..+....|+....+.-+.+|+.|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 5667777788888888888877655432 22 234667888889999999999999999988889999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 044988 257 VAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ 336 (538)
Q Consensus 257 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 336 (538)
..++++..-.+.++-..++|..++.. |.........-++..+++.. ..|+...-..+-.+.++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~----ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEY----GHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHH
Confidence 99999999999999999999988887 54444333322333332221 012211000110011000
Q ss_pred CCccHHHHHHHHHHHHhcccCcHHHH-HHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-------CC
Q 044988 337 GYAQEALLTFLGVLSACSHGGFVDEG-RQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-------MK 408 (538)
Q Consensus 337 ~~~~~a~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 408 (538)
- -++.++ +..-.++.+ ........+...-.+.+.|+.++|.++|.-+. ..
T Consensus 501 a-------------------ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 501 A-------------------ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred H-------------------HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 0 011111 112223332 24455566777778889999999999987662 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccC
Q 044988 409 PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEID 442 (538)
Q Consensus 409 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 442 (538)
|......-+++...+.++...|...++-| ....
T Consensus 559 p~lnAm~El~d~a~~~~spsqA~~~lQ~a-~~~n 591 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSPSQAIEVLQLA-SAFN 591 (625)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHH-HHcC
Confidence 44444556777788889999999999988 4433
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.4e-12 Score=116.03 Aligned_cols=383 Identities=14% Similarity=0.086 Sum_probs=237.7
Q ss_pred HHHHHHHHccCChhHHHHHHhcCC--CCC-cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-chHHHHHHHHHcc
Q 044988 56 AKLLAFYVTSGYLINAHKVFEKTE--NPS-TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDE-YTYSFLLSVCARC 131 (538)
Q Consensus 56 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 131 (538)
...-+-|.+.|++++|++.+.+.. .|+ +..|.....+|...|+|+++.+--...++ +.|+- ..+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 334456777788888888887765 466 66777777888888888877776666665 34542 2455555566666
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---Cch--------------------
Q 044988 132 GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVV-------------------- 188 (538)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~-------------------- 188 (538)
|++++|+.=+.-..-.|--.|..+--.+=+.+-+.| ..++.+.+.+-..| +..
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a----~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA----MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH----HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 777666532222211111111111111111111111 22233333311111 111
Q ss_pred ---hHHHHHHHHHh--cC---CHHHHHHHHccCC-------CCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044988 189 ---SWNSLLKGYVK--RG---DIDGAWKIFDEMP-------HRN---------VVSWTTMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 189 ---~~~~li~~~~~--~g---~~~~A~~~~~~m~-------~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m 244 (538)
+...+..++.. .+ .+..|...+.+-. ..+ ..+...-...+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 11111111100 11 2233333322210 111 112222223344567888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--
Q 044988 245 RRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN-- 322 (538)
Q Consensus 245 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-- 322 (538)
.+....++.. |..+...|....+.++....|+...+. .|.++.+|..-.+.+.-.+++++|..-|++...-+
T Consensus 353 I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 353 IKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 8754444332 666677788888888888888888886 67777777777888888888999999998877633
Q ss_pred -cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHH
Q 044988 323 -TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSL 401 (538)
Q Consensus 323 -~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 401 (538)
+.+|-.+.-+..+. +.++++...|++.++++ +--+.+|+.....+...+++++|.+.
T Consensus 427 ~~~~~iQl~~a~Yr~--------------------~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQ--------------------HKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred hhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 33443333333333 47888899999999873 33478999999999999999999999
Q ss_pred HHhCC-CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHH
Q 044988 402 VQNMP-MKPN---------DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQ 471 (538)
Q Consensus 402 ~~~~~-~~p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 471 (538)
|+... ..|. ..+.-.++. +.-.+++..|..+++++ .+++|....+|. .|+..-.+.|+.++|+++|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA-~e~Dpkce~A~~-tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKA-IELDPKCEQAYE-TLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHH-HccCchHHHHHH-HHHHHHHHHhhHHHHHHHHH
Confidence 98763 3333 222223332 23448999999999999 999999999899 99999999999999999999
Q ss_pred HHHh
Q 044988 472 KMIK 475 (538)
Q Consensus 472 ~m~~ 475 (538)
+-..
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 8653
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6.7e-11 Score=107.30 Aligned_cols=407 Identities=11% Similarity=0.112 Sum_probs=290.1
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcc-hHHHHHH
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEY-TYSFLLS 126 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~ 126 (538)
+...|....+.-...+++..|..+|++... .+...|-.-+..=.+++.+..|..++++.... -|-+. .|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 344555555555567788899999998774 56667777888888999999999999999863 45433 4555555
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC--CCCchhHHHHHHHHHhcCCHH
Q 044988 127 VCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP--ARSVVSWNSLLKGYVKRGDID 204 (538)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 204 (538)
.=-..|++..|.++|++-.+ ..|+...|++.++.-.+... ++.|..++++.+ .|++.+|--..+.=.++|...
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKE---IERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 56678999999999999987 47999999999999999999 999999999866 589999999999999999999
Q ss_pred HHHHHHccCCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHH-
Q 044988 205 GAWKIFDEMPH------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWI- 275 (538)
Q Consensus 205 ~A~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~- 275 (538)
.|..+|+...+ -+...++++...-.+...++.|.-+|+-.... ++.+ ...|.....---+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 99999988654 12335666666666778899999999888764 2222 23344433333345655443332
Q ss_pred -------HHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCc---chHHHHHHHHHhcCCccHHH
Q 044988 276 -------HSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNT---VSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 276 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~---~~~~~li~~~~~~~~~~~a~ 343 (538)
++..++ ..|.+..+|--.+..-...|+.+...++|++... |.. ..|...|-....--
T Consensus 304 v~KRk~qYE~~v~-----~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa------ 372 (677)
T KOG1915|consen 304 VGKRKFQYEKEVS-----KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA------ 372 (677)
T ss_pred hhhhhhHHHHHHH-----hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH------
Confidence 333444 3788888888999999999999999999998765 211 12222222111100
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh----hhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLF----SRAGLMDEAFSLVQNM-PMKPNDAVLGSLL 418 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 418 (538)
+-.-....+.+.+.++++...+. ++....|+.-+--+| .++.++..|.+++-.. ..-|-..+|...|
T Consensus 373 ------lyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 373 ------LYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred ------HHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 00112345778888888887752 233445554443333 4677888888888665 4568888888888
Q ss_pred HHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 044988 419 LGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSW 486 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 486 (538)
..-.+.+++|....++++. .+..|.+..+|. -.+..-...|+++.|..+|.-..+......|..-|
T Consensus 445 elElqL~efDRcRkLYEkf-le~~Pe~c~~W~-kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKF-LEFSPENCYAWS-KYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHhhHHHHHHHHHHH-HhcChHhhHHHH-HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 8888888888888888888 888888887777 77777777888888888888877665555565666
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2.3e-11 Score=118.84 Aligned_cols=412 Identities=13% Similarity=0.105 Sum_probs=294.2
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHcc
Q 044988 55 LAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARC 131 (538)
Q Consensus 55 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 131 (538)
.-...+...-.|+.++|.+++.++.+ .+...|..|...|-+.|+.+++...+-..-... +-|...|..+.....++
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc
Confidence 33344444455999999999998874 466789999999999999999998875554322 34667899999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCc----h----hHHHHHHHHHhcCCH
Q 044988 132 GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSV----V----SWNSLLKGYVKRGDI 203 (538)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~ 203 (538)
|+++.|.-+|.+.++.. +++....-.-...|-+.|+ ...|..-|.++.+.++ . .--..++.+...++-
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~---~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGD---LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh---HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999986 6777777778899999999 9999988888776332 2 222345667777777
Q ss_pred HHHHHHHccCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------------------------CCC
Q 044988 204 DGAWKIFDEMPH-----RNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR---------------------------VGL 251 (538)
Q Consensus 204 ~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------~~p 251 (538)
+.|.+.++.... .+...++.++..|.+...++.|......+.... +.+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 889888887653 344578899999999999999999998887722 222
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC--CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CCcch
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR--EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR----RNTVS 325 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~ 325 (538)
+...+ .+.-++.+....+....+.....+. . ....+..+.-+..+|...|++.+|..+|..+.. .+...
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~----n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVED----NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 33331 2233445555556665566666555 3 455677888899999999999999999999876 35678
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHH--------------HHHhcccCcHHHHHHHHHHhhh-------hcCCCccHHHHHH
Q 044988 326 WTSMITGFAKQGYAQEALLTFLGV--------------LSACSHGGFVDEGRQFFECMNQ-------NWGIKPRIEHYGC 384 (538)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~l--------------l~~~~~~~~~~~a~~~~~~~~~-------~~~~~p~~~~~~~ 384 (538)
|-.+...|...|..+.|+..|..+ -..+...|+.++|.+++..+.- ..+..|+......
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 999999999999999999666554 3466778999999999988531 1134455555555
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-----------------------------------------------------CCC--
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMP-----------------------------------------------------MKP-- 409 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~-----------------------------------------------------~~p-- 409 (538)
..+.+...|+.++-+.....|. ..+
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 5666667776665333322210 000
Q ss_pred ---------CH----HHHHHHHHHHHhcCCHHHHHHHHHHch--hccCCCCc--ccHHHHHHHHHHhcCChHHHHHHHHH
Q 044988 410 ---------ND----AVLGSLLLGCRIHNNAELASQVAQKLV--AEIDPEQA--AGYLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 410 ---------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~p~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
.. ..+.-++...++.+++++|+.+...+. ..+.-+.. ..+......+....+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 01 233445667889999999999998886 11122221 11222455677889999999999999
Q ss_pred HHhC
Q 044988 473 MIKM 476 (538)
Q Consensus 473 m~~~ 476 (538)
|...
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 9854
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=1.1e-11 Score=120.44 Aligned_cols=420 Identities=15% Similarity=0.127 Sum_probs=241.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCC
Q 044988 38 QIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE----NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKE 113 (538)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 113 (538)
.++..+...|+.|+..+|.++|..|+..|+.+.|- +|.-|. ..+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777788888888888888888888888888887 777666 235556788887777777776665
Q ss_pred CCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-------hCCCC--------------chhHHhHHHHHHHhcCCCCCh
Q 044988 114 TEPDEYTYSFLLSVCARCGLFREGEQVHGRVLA-------SGYCS--------------NVFIRTNLMNLYLMSGGECGV 172 (538)
Q Consensus 114 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~--------------~~~~~~~l~~~~~~~g~~~~~ 172 (538)
.|.+.||..|..+|...||+..-..+-+.+.. .|+.. ....-.+.+......|- +
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl---w 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL---W 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH---H
Confidence 57777888888888888876542222221211 12110 00111122333333344 5
Q ss_pred hHHHHHhhcCCCCC-chhHHHHHHHHHhc-CCHHHHHHHHccCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044988 173 GCARLLFDDMPARS-VVSWNSLLKGYVKR-GDIDGAWKIFDEMPH-RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 173 ~~a~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (538)
+.+.+++..++... ......+++-+... ..+++-........+ ++..+|..++.+-..+|+.+.|..++.+|.+.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 55555555554310 00111112222222 223333344444443 7777777777777777788888888888877777
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHH-------------------
Q 044988 250 GLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEE------------------- 310 (538)
Q Consensus 250 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------------- 310 (538)
+.+.+-|-.++-+ .++...++.++..|.+. |+.++..++...+-.+.+.|....
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~----gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEK----GVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHh----cCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 7777777666655 66666666666666666 666665555444333333221110
Q ss_pred -----HHHHHHh---------cCC-------CCcchHHHHHHHHHhcCCccHHH--------------------------
Q 044988 311 -----AYGVFRK---------MQR-------RNTVSWTSMITGFAKQGYAQEAL-------------------------- 343 (538)
Q Consensus 311 -----a~~~~~~---------m~~-------~~~~~~~~li~~~~~~~~~~~a~-------------------------- 343 (538)
|.+.++. .++ .....|.. +.-....|+.++..
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 1111110 000 00111211 11122234333332
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 044988 344 ------------------------------------------------------------------------LTFLGVLS 351 (538)
Q Consensus 344 ------------------------------------------------------------------------~~~~~ll~ 351 (538)
..-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 11222222
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-----MKPNDAVLGSLLLGCRIHNN 426 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~ 426 (538)
.|+..-+..+++..-+..... - - ...|..||+.+....+.+.|..+.++.. ..-|..-+..+.+...+.+.
T Consensus 468 ~l~se~n~lK~l~~~ekye~~-l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDL-L-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 333333333333322222211 1 1 1467888888888999999999998885 22445566778888899999
Q ss_pred HHHHHHHHHHch--hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 044988 427 AELASQVAQKLV--AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSW 486 (538)
Q Consensus 427 ~~~A~~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 486 (538)
...+..+++.+. ....|.....+. -+.+..+..|+.+...++.+-+...|+.. .+--|
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f-~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILF-PLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHH-HHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 999999999996 444454444344 45567788999999999999998888865 34445
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=8.9e-11 Score=106.51 Aligned_cols=414 Identities=10% Similarity=0.088 Sum_probs=301.0
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--CCc-chHHHHHHHHhcCCCchHHHHHHH
Q 044988 31 NTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--PST-AIWNQMIRGHARSETPEKSVYLYK 107 (538)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~ 107 (538)
+++..|+.+|+..+... ..+...|-..+.+-.++..+..|..+|++... |-+ ..|--.+..=-..|++..|.++|+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 46678999999988776 44778888899999999999999999998663 332 234444444456799999999999
Q ss_pred HhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC--
Q 044988 108 QMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR-- 185 (538)
Q Consensus 108 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-- 185 (538)
+-.+ ..|+...|.+.|+.=.+...++.|..++++.+-. .|++..|--....--++|. +..|.++|+...+.
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~---~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN---VALARSVYERAIEFLG 238 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhh
Confidence 9887 5899999999999999999999999999999864 6999999999999999999 99999999887652
Q ss_pred ----CchhHHHHHHHHHhcCCHHHHHHHHccC----CCC-ChHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCC
Q 044988 186 ----SVVSWNSLLKGYVKRGDIDGAWKIFDEM----PHR-NVVSWTTMISGCAQNGKSRQALSL--------FNEMRRAR 248 (538)
Q Consensus 186 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~g 248 (538)
+...+++....=..+..++.|.-+|+-. ++. ....|..+...--+-|+.....+. |+.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~- 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK- 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-
Confidence 2334555555556677788888887553 332 233555555555556765544433 3344433
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcch--hHHHHHHH--------HHHhCCCHHHHHHHHHhc
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLV--SLNNALIH--------MYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~g~~~~a~~~~~~m 318 (538)
-+-|-.++--.+..-...|+.+...++|+.+... +||.. ..|...|- .-....+++.+.++|+..
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-----vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-----VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2457778878888888889999999999999886 44421 12222211 112467888899988876
Q ss_pred CC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCCh
Q 044988 319 QR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLM 395 (538)
Q Consensus 319 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 395 (538)
.+ | ...|+..+=-.|+ .--.+..++..|.+++...+ |..|-..++...|..-.+.+++
T Consensus 393 l~lIPHkkFtFaKiWlmyA----------------~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYA----------------QFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HhhcCcccchHHHHHHHHH----------------HHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhH
Confidence 65 3 3344443322222 22234458889999999888 7799999999999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCccc-HHHHHHHHHHhcCChHHHHHHHHH
Q 044988 396 DEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAG-YLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 396 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
+.+..++++.. ..| |-.+|......-...|+.+.|..+|+-+..+-.-+-+.. +. ..++.-...|.++.|..++++
T Consensus 454 DRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk-aYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK-AYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH-HhhhhhhhcchHHHHHHHHHH
Confidence 99999999874 444 468888888888899999999999998842222222221 22 333444578999999999999
Q ss_pred HHhCCC
Q 044988 473 MIKMGV 478 (538)
Q Consensus 473 m~~~~~ 478 (538)
+.+..-
T Consensus 533 lL~rt~ 538 (677)
T KOG1915|consen 533 LLDRTQ 538 (677)
T ss_pred HHHhcc
Confidence 987533
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.7e-11 Score=110.50 Aligned_cols=410 Identities=13% Similarity=0.121 Sum_probs=275.8
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCCC----CCcchH-HHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcch----HH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTEN----PSTAIW-NQMIRGHARSETPEKSVYLYKQMIDKETEPDEYT----YS 122 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~ 122 (538)
-.++..|.+-|.......+|+..++-+.+ ||.... -.+.+.+.+...+.+|+..|+..+..-...+..+ .+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 34555666777778888999999987764 443322 2345677888999999999988876421122223 33
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----------------CC
Q 044988 123 FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----------------RS 186 (538)
Q Consensus 123 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----------------~~ 186 (538)
.+.-.+.+.|.++.|..-|+...+. .|+-.+-..|+-++...|+ .++..+.|.+|.. |+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344578899999999999998886 5887777778888888888 8888888887753 12
Q ss_pred chhHHH-----HHHHHHhcC--CHHHHHHHHccCC----CCChH---HH----------HH--------HHHHHHHcCCH
Q 044988 187 VVSWNS-----LLKGYVKRG--DIDGAWKIFDEMP----HRNVV---SW----------TT--------MISGCAQNGKS 234 (538)
Q Consensus 187 ~~~~~~-----li~~~~~~g--~~~~A~~~~~~m~----~~~~~---~~----------~~--------li~~~~~~~~~ 234 (538)
....|- .++-.-+.. +.++++-.--++. .|+-. -| .- -...|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222222 222222221 2222222222222 23221 01 11 12346789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 235 RQALSLFNEMRRARVGLDQVALVAALSAC--AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
+.|+++++-..+..-+.-...-+.|-..+ -.-.++..|.++-+..... ...+......-.+.-...|+++.|.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-----dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-----DRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-----cccCHHHhhcCCceeeecCcHHHHH
Confidence 99999999887654333333333322222 2345677777777666654 3333333333344445679999999
Q ss_pred HHHHhcCCCCcchHHHH---HHHHHhcCCccHHHH--------------HHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 313 GVFRKMQRRNTVSWTSM---ITGFAKQGYAQEALL--------------TFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 313 ~~~~~m~~~~~~~~~~l---i~~~~~~~~~~~a~~--------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
+.+++....|...-.+| .-.+-..|+.++|+. +...+.+.|.-..+...|.+++.+.. .+
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~---sl 587 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SL 587 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---cc
Confidence 99999988765543333 345677899999983 34445566666778888888887766 44
Q ss_pred Cc-cHHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH
Q 044988 376 KP-RIEHYGCMVDLFSRAGLMDEAFSLVQNM-P-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL 452 (538)
Q Consensus 376 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~ 452 (538)
.| |+.+..-|.+.|-+.|+-..|.+.+-+- + ++-|..+..=|..-|....-.++|+.+|+++ .-+.|+... |.-.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka-aliqp~~~k-wqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA-ALIQPNQSK-WQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH-HhcCccHHH-HHHH
Confidence 55 6889999999999999999998876543 4 4456777777777788888999999999999 888999888 6636
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 044988 453 VANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 453 l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++.++.+.|.+++|.++++.+..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh
Confidence 777888999999999999998864
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.2e-11 Score=109.10 Aligned_cols=212 Identities=14% Similarity=0.140 Sum_probs=145.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHH
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMIT 331 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~ 331 (538)
|.-.+.+-|+-.++-++|...|+...+. .|....+|+.+..-|....+...|.+.+++..+ .|-..|-.+.+
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL-----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL-----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc-----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 4455555556666666666677666665 666677777777777777777777777777665 34555555655
Q ss_pred HHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCCC--C
Q 044988 332 GFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMPM--K 408 (538)
Q Consensus 332 ~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 408 (538)
+|.-.+ .+.-|+-.|++..+ ++| |...|.+|.++|.+.++.++|++.|.+... .
T Consensus 407 aYeim~--------------------Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 407 AYEIMK--------------------MHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHhc--------------------chHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 555544 45556677777664 366 688899999999999999999999888752 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHch----hc--cCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 044988 409 PNDAVLGSLLLGCRIHNNAELASQVAQKLV----AE--IDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPP 482 (538)
Q Consensus 409 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 482 (538)
.+...+..|...+-+.++.++|...+++.. .+ ..|....+.. .|+.-+.+.+++++|..........
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~-fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL-FLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 345788888888988999999988888874 11 3333333334 5777788889999888876654431
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044988 483 GQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAM 521 (538)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~ 521 (538)
.++.+++-..++++++.|.
T Consensus 537 --------------------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 --------------------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred --------------------CchHHHHHHHHHHHHHhcC
Confidence 3355777777777776663
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1e-12 Score=124.19 Aligned_cols=275 Identities=12% Similarity=0.038 Sum_probs=155.8
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC------CchhHHHHHHHHHhcCCHH-HH
Q 044988 134 FREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR------SVVSWNSLLKGYVKRGDID-GA 206 (538)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~-~A 206 (538)
..+|...|..+... +.....+...+..+|...++ +++|+++|+.+.+. +...|.+.+--+-+.-... -|
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~---Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIE---YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 45566666663322 23334566666666666666 66666666665542 4455555554332221111 12
Q ss_pred HHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccC
Q 044988 207 WKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSV 285 (538)
Q Consensus 207 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 285 (538)
..+.+. ....+.+|..+.++|.-+++++.|++.|++..+ +.| ..++|+.+-+-+.....+|.|...|+..+..
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 222222 123455677777777777777777777766655 334 4455555555555555555555555555443
Q ss_pred CCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHH
Q 044988 286 GREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQF 365 (538)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~ 365 (538)
.|.+..+|..|.-.|.+.++++.|+- .
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~---------------------------------------------------~ 511 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEF---------------------------------------------------H 511 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHH---------------------------------------------------H
Confidence 34444444444444444444444444 4
Q ss_pred HHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccC
Q 044988 366 FECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEID 442 (538)
Q Consensus 366 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 442 (538)
|++.. .+.| +.+....+...+.+.|+.++|+.+++++. .. -|...--.-+..+...+++++|+..++++ .++.
T Consensus 512 fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL-k~~v 587 (638)
T KOG1126|consen 512 FQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL-KELV 587 (638)
T ss_pred HHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH-HHhC
Confidence 44444 3345 35555566666777777777777777763 22 23333333444555667777777777777 7777
Q ss_pred CCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 443 PEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 443 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
|++...|. +++.+|.+.|+.+.|+.-|--+.+-
T Consensus 588 P~es~v~~-llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 588 PQESSVFA-LLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred cchHHHHH-HHHHHHHHHccchHHHHhhHHHhcC
Confidence 77777777 7777888888777777777666653
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=3e-14 Score=130.63 Aligned_cols=249 Identities=14% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHHHhcCCHHHHHHHHccC-CC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044988 194 LKGYVKRGDIDGAWKIFDEM-PH----RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGD 268 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 268 (538)
...+.+.|++++|++++++. .. .+...|..+...+...++++.|...|+++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444555566666666332 11 23334444444555566677777777776654322 33445455544 56666
Q ss_pred hHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCccHHH
Q 044988 269 LKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-----RNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
+++|..++....+. ..+...+..++..+.+.++++++.++++.+.. ++...|..+...+.+
T Consensus 93 ~~~A~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-------- 158 (280)
T PF13429_consen 93 PEEALKLAEKAYER------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-------- 158 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH--------
T ss_pred cccccccccccccc------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH--------
Confidence 77766666554433 12334445566677777777777777776432 233333333344444
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLG 420 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 420 (538)
.|+.++|+.++++..+. .| |....+.++..+...|+.+++.++++... ...|...+..+..+
T Consensus 159 ------------~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 159 ------------LGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp ------------CCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44777778888888765 56 47788899999999999999887777663 23556678889999
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+...|+.++|+..+++. ....|+++.... .+++++...|+.++|.++.++...
T Consensus 224 ~~~lg~~~~Al~~~~~~-~~~~p~d~~~~~-~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKA-LKLNPDDPLWLL-AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHT-HHHHHHHHHHH-HHHSTT-HHHHH-HHHHHHT-----------------
T ss_pred hcccccccccccccccc-cccccccccccc-cccccccccccccccccccccccc
Confidence 99999999999999999 999999999777 999999999999999999887653
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=6.5e-10 Score=104.96 Aligned_cols=401 Identities=11% Similarity=0.092 Sum_probs=215.4
Q ss_pred cCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHh----HhCCCCCCcchHHHHHHHHHccCCcHHH
Q 044988 65 SGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQM----IDKETEPDEYTYSFLLSVCARCGLFREG 137 (538)
Q Consensus 65 ~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a 137 (538)
...++.|..++.... +.+...|-+-...--.+|+.+....++.+- ...|+..+...|..=...|-..|..-.+
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 334444444443332 334445544444444555555555554443 2345555555565555556556666666
Q ss_pred HHHHHHHHHhCCCCc--hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 044988 138 EQVHGRVLASGYCSN--VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDE 212 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 212 (538)
..+....+..|+... ..+|..-...|.+.+. ++-|..+|....+ .+...|......--..|..+.-..+|++
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~---~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA---IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcch---HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 666665555554322 2355555555555555 6666666555543 2445555555555555666666666655
Q ss_pred CCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCC
Q 044988 213 MPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREP 289 (538)
Q Consensus 213 m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 289 (538)
... | ....|-.....+-..|+...|..++....+.... +...+...+..-.....++.|..+|...... .
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~------s 648 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI------S 648 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc------C
Confidence 442 2 2233444445555566666666666666554322 4455555555556666666666666655442 3
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCc-chHHHHHHHHHhcCCccHHHHHHHH--------------HHHH
Q 044988 290 VLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNT-VSWTSMITGFAKQGYAQEALLTFLG--------------VLSA 352 (538)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~--------------ll~~ 352 (538)
++..+|.--+....-.++.++|.+++++..+ |+. ..|-.+.+.+-+.++.+.|..+|.. +...
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 3444444444444555666666666665554 332 2344444555555555555533332 2222
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 044988 353 CSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 429 (538)
--+.|.+-+|+.+++...-+ .| |...|-..|++-.+.|+.+.|..+..+.. .+.+...|..-|...-+.++-.+
T Consensus 729 eEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 22335555666666655443 23 45555666666666666666655554432 22334555555555555555445
Q ss_pred HHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 044988 430 ASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSW 486 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 486 (538)
....+++. -.++.... .++..+....++++|.+.|.+..+.+ |+.|-.|
T Consensus 806 s~DALkkc-----e~dphVll-aia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 806 SIDALKKC-----EHDPHVLL-AIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred HHHHHHhc-----cCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 55555544 22333355 67778888999999999999988744 4556666
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=2.5e-11 Score=116.62 Aligned_cols=274 Identities=11% Similarity=-0.018 Sum_probs=166.1
Q ss_pred cCCCCChhHHHHHhhcCCCC--Cch-hHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHH--HHHHHHHHcCCHHHHH
Q 044988 166 SGGECGVGCARLLFDDMPAR--SVV-SWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWT--TMISGCAQNGKSRQAL 238 (538)
Q Consensus 166 ~g~~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~ 238 (538)
.|+ ++.|++.+....+. ++. .|........+.|+++.|...|.++.+ |+...+. .....+...|+++.|.
T Consensus 97 eGd---~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGD---YQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCC---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 456 66666666554432 112 222223333556666666666666543 2322221 2234555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcch-------hHHHHHHHHHHhCCCHHHH
Q 044988 239 SLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLV-------SLNNALIHMYASCGEIEEA 311 (538)
Q Consensus 239 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a 311 (538)
..++++.+.. +-+......+...+.+.|+++.|..++..+.+. ...+.. ..|..++.......+.+..
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~----~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA----HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666665533 223444555555666666666666666666655 221111 1112222222333344445
Q ss_pred HHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Q 044988 312 YGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDL 388 (538)
Q Consensus 312 ~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 388 (538)
.++++.+.+ .++... ..+..++...|+.+.|..++++..+. .|+.... ++.+
T Consensus 249 ~~~w~~lp~~~~~~~~~~--------------------~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~ 303 (398)
T PRK10747 249 KRWWKNQSRKTRHQVALQ--------------------VAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIP 303 (398)
T ss_pred HHHHHhCCHHHhCCHHHH--------------------HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHh
Confidence 555555433 233333 33445555566888888999888754 5555322 3334
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHH
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDV 466 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 466 (538)
....++.+++.+..+... ..|+ ...+..+...|.+.+++++|.+.|+.+ ....|++.. +. .++.++.+.|+.++|
T Consensus 304 ~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a-l~~~P~~~~-~~-~La~~~~~~g~~~~A 380 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA-LKQRPDAYD-YA-WLADALDRLHKPEEA 380 (398)
T ss_pred hccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHHH-HH-HHHHHHHHcCCHHHH
Confidence 445699999999998874 4465 556778888899999999999999999 999999888 88 999999999999999
Q ss_pred HHHHHHHHh
Q 044988 467 AAVRQKMIK 475 (538)
Q Consensus 467 ~~~~~~m~~ 475 (538)
.+++++-..
T Consensus 381 ~~~~~~~l~ 389 (398)
T PRK10747 381 AAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh
Confidence 999987653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=2.8e-13 Score=124.29 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHHccCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHH
Q 044988 198 VKRGDIDGAWKIFDEMP--HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR-VGLDQVALVAALSACAEIGDLKLGKW 274 (538)
Q Consensus 198 ~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~ 274 (538)
...+++++|..++...- .++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.+.|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555566665555432 2455566677777888888888888888876532 34566667777777788888888888
Q ss_pred HHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044988 275 IHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLS 351 (538)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~ 351 (538)
.++...+. .|.+..+.+.++..+...|+.+++.++++...+ .|+..|..+..++...|
T Consensus 168 ~~~~al~~-----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg-------------- 228 (280)
T PF13429_consen 168 DYRKALEL-----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG-------------- 228 (280)
T ss_dssp HHHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--------------
T ss_pred HHHHHHHc-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc--------------
Confidence 88888886 677777777888888888888876666665543 45556666666666655
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
+.++|..+|++..+. .| |......+.+++...|+.++|.++.++.
T Consensus 229 ------~~~~Al~~~~~~~~~---~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 229 ------RYEEALEYLEKALKL---NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -------HHHHHHHHHHHHHH---STT-HHHHHHHHHHHT---------------
T ss_pred ------ccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence 566666777776654 34 6777778888888888888888877654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=4.6e-11 Score=114.77 Aligned_cols=216 Identities=12% Similarity=0.061 Sum_probs=161.6
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 044988 194 LKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQ-------VALVAALSAC 263 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~ 263 (538)
...+...|+++.|...+++..+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777654 3 4567788889999999999999999999987655332 1333344444
Q ss_pred HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH
Q 044988 264 AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+..... .++..|.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~~l~~--------- 303 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLVLLIP--------- 303 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHh---------
Confidence 4445566666666666554 56677788899999999999999999998876632222 2222221
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGC 421 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 421 (538)
....++.+++.+..+...+. .| |...+..+...+.+.|++++|.+.|+... ..|+..++..+...+
T Consensus 304 ---------~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 304 ---------RLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred ---------hccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12235778888999888876 45 56778899999999999999999999884 679999999999999
Q ss_pred HhcCCHHHHHHHHHHc
Q 044988 422 RIHNNAELASQVAQKL 437 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~ 437 (538)
.+.|+.++|.+++++.
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999999988
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=6.2e-12 Score=118.96 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=184.0
Q ss_pred CHHHHHHHHccCCC--CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHH
Q 044988 202 DIDGAWKIFDEMPH--RNV-VSWTTMISGCAQNGKSRQALSLFNEMRRAR--VGLDQVALVAALSACAEIGDLKLGKWIH 276 (538)
Q Consensus 202 ~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~ 276 (538)
+..+|...|.+.++ +|. .+...+..+|...+++++|.++|+...+.. .--+..+|.+.+-.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888888653 333 345567889999999999999999998742 112566777776554321 222222
Q ss_pred -HHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 044988 277 -SYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN---TVSWTSMITGFAKQGYAQEALLTFLGVLSA 352 (538)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~ 352 (538)
+.+.+ ..|..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+....
T Consensus 410 aq~Li~-----~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------------- 469 (638)
T KOG1126|consen 410 AQDLID-----TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------------- 469 (638)
T ss_pred HHHHHh-----hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH---------------
Confidence 23333 378889999999999999999999999999998744 455555554444444
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 044988 353 CSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~ 429 (538)
.+|.|...|+... ++.|+ -..|.-|.-.|.+.++++.|+-.|+++. +.|. .+....+...+.+.|+.++
T Consensus 470 -----e~d~a~~~fr~Al---~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 470 -----EFDKAMKSFRKAL---GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred -----HHHhHHHHHHhhh---cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 6788889998877 44553 4466667889999999999999999885 5555 5566667777899999999
Q ss_pred HHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 430 ASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|+++++++ ..++|.++..-. ..+.++...+++++|+..++++++
T Consensus 542 AL~~~~~A-~~ld~kn~l~~~-~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 542 ALQLYEKA-IHLDPKNPLCKY-HRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHHH-HhcCCCCchhHH-HHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999 999999998777 788999999999999999999987
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.4e-10 Score=106.19 Aligned_cols=437 Identities=12% Similarity=0.037 Sum_probs=289.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhc--CCCCCcchHHHHHHHHhcCC
Q 044988 20 TRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEK--TENPSTAIWNQMIRGHARSE 97 (538)
Q Consensus 20 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~ 97 (538)
+..+.+-+....++..|.-+-+.....+.. +...--+.+++.-.|..+.|..+... +.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~d--p~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTND--PADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCC--hHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 444555555555666666666666665544 44444477888888888888777754 44678888888889999999
Q ss_pred CchHHHHHHH----HhHhC---------CCCCCcch----HHHHH-------HHHHccCCcHHHHHHHHHHHHhCCCCch
Q 044988 98 TPEKSVYLYK----QMIDK---------ETEPDEYT----YSFLL-------SVCARCGLFREGEQVHGRVLASGYCSNV 153 (538)
Q Consensus 98 ~~~~a~~~~~----~m~~~---------~~~p~~~~----~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 153 (538)
+++.|..++. .+... -+.+|..- -+.-. ..|....+++.|...|.+.....+ -.-
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~ 175 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCF 175 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhH
Confidence 9999999988 32110 01111111 11111 234445567777777777655431 111
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHH--ccCC--CCChHHHHHH
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPA-----RSVVSWNSLLKGYVKRGDIDGAWKIF--DEMP--HRNVVSWTTM 224 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~--~~~~~~~~~l 224 (538)
..+-.++....-. ..+-..+|+...- .+......+.....-...-+.....- ..+. +.++.....-
T Consensus 176 Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 176 EAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred HHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 2222222222111 1222333332211 01111111111110000000000000 0000 1234444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh
Q 044988 225 ISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS 304 (538)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (538)
..-+...+++.+..++.+...+. .++....+..-|.++...|+...-..+=..+++. .|....+|-++.-.|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-----yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-----YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCCcchhhHHHHHHH
Confidence 56677789999999999998775 2455556666667888888887776666667765 88888889899999999
Q ss_pred CCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHH--------------HHhcccCcHHHHHHHHH
Q 044988 305 CGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEALLTFLGVL--------------SACSHGGFVDEGRQFFE 367 (538)
Q Consensus 305 ~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ll--------------~~~~~~~~~~~a~~~~~ 367 (538)
.|+..+|++.|.+...- =...|-.....|.-.|..+.|+..|...- --|.+.++.+.|.+.|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999886652 24588899999999999999985554432 24456789999999999
Q ss_pred HhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 368 CMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--------MKP-NDAVLGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 368 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
+.. ++.| |+..++.+.-..-..+.+.+|..+|+... .++ ...+++.|..+|.+.+.+++|+..+++.
T Consensus 405 ~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 887 6677 68888999888888999999999998763 112 4567888999999999999999999999
Q ss_pred hhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 438 VAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 438 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
....|.+..++. .++-+|...|.++.|++.|.+..-
T Consensus 482 -L~l~~k~~~~~a-sig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 -LLLSPKDASTHA-SIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred -HHcCCCchhHHH-HHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999888 999999999999999999988764
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.4e-10 Score=112.08 Aligned_cols=222 Identities=11% Similarity=-0.001 Sum_probs=130.3
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccC
Q 044988 194 LKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSAC---AEIG 267 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~ 267 (538)
...+...|+++.|...++.+.+ | +...+..+...+...|++++|.+++..+.+.++.+.......-..++ ...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777776653 3 45567788888888999999999999888876543332211111111 2222
Q ss_pred ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHH-HHHHHHHhcCCccHHHH
Q 044988 268 DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWT-SMITGFAKQGYAQEALL 344 (538)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~-~li~~~~~~~~~~~a~~ 344 (538)
..+.+...+..+.+.. +...+.+...+..++..+...|+.++|.+++++..+ ||..... .++..+..
T Consensus 240 ~~~~~~~~L~~~~~~~-p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--------- 309 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQ-PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--------- 309 (409)
T ss_pred HHhcCHHHHHHHHHHC-CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh---------
Confidence 2222223344343330 001224677777888888888888888888888765 3322100 01111111
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-H--HHHHHHHHHhhhcCChHHHHHHHHh--C-CCCCCHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-I--EHYGCMVDLFSRAGLMDEAFSLVQN--M-PMKPNDAVLGSLL 418 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~ 418 (538)
...++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|+. . ...|+...+..+.
T Consensus 310 ---------l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 310 ---------LKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred ---------cCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 1123455666666666554 332 3 4555677777777777777777773 2 3467776676777
Q ss_pred HHHHhcCCHHHHHHHHHHc
Q 044988 419 LGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~ 437 (538)
..+.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777765
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=7e-10 Score=96.04 Aligned_cols=286 Identities=13% Similarity=0.138 Sum_probs=165.3
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 96 SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
++++++|.++|-+|.+.. +-+..+--+|.+.|.+.|..+.|..+++.+.++ ||...-. +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~q----------------r~ 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQ----------------RL 107 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHH----------------HH
Confidence 456777777777777632 223334556666677777777777777776653 3321111 01
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044988 176 RLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNV---VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD 252 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (538)
...-.|.+-|...|-+|.|+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.|-.+.
T Consensus 108 ------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 108 ------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred ------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 1122345567778888888888888776222 3566788889999999999999998888665554
Q ss_pred HH----HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHH
Q 044988 253 QV----ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTS 328 (538)
Q Consensus 253 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 328 (538)
.. .|--+...+....+++.|...+....+. .|..+..--.+.+.+...|+++.|.+.++.+.+.|+....
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~- 249 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA-----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS- 249 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH-
Confidence 32 2334444444556777777777777765 4555555556677777777777777777777665543222
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHH-HhCCC
Q 044988 329 MITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLV-QNMPM 407 (538)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~ 407 (538)
.+...+..+|.+.|+.+++...+..+.+. .++...-..+.+.-......+.|...+ +.+..
T Consensus 250 ---------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 250 ---------------EVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 12233344444455666666666666544 233333333333333333344443333 44455
Q ss_pred CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHc
Q 044988 408 KPNDAVLGSLLLGCRI---HNNAELASQVAQKL 437 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 437 (538)
+|+...+..|+..... .|...+-+..++.|
T Consensus 312 ~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 312 KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 6666666666665322 22234444444444
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=6.5e-10 Score=107.48 Aligned_cols=280 Identities=13% Similarity=0.081 Sum_probs=202.0
Q ss_pred HHHHHHHHH--ccCChhHHHHHHhcCCC--CCcch-HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcc--hHHHHHHH
Q 044988 55 LAKLLAFYV--TSGYLINAHKVFEKTEN--PSTAI-WNQMIRGHARSETPEKSVYLYKQMIDKETEPDEY--TYSFLLSV 127 (538)
Q Consensus 55 ~~~l~~~~~--~~g~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~ 127 (538)
...+..+.. ..|+++.|.+.+.+..+ |+... +-....+..+.|+++.|.+.|++..+. .|+.. ........
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHH
Confidence 333444433 47999999999987664 43332 334456677889999999999998764 36554 33445777
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHH--------HHHHH
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWN--------SLLKG 196 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~--------~li~~ 196 (538)
+...|+++.|...++.+.+.. +-+..+...+..++...|+ ++.|.+.+....+. +...+. .++..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999986 5567788999999999999 99999998888753 222221 11221
Q ss_pred HHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCChH
Q 044988 197 YVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVA--L-VAALSACAEIGDLK 270 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~li~~~~~~~~~~ 270 (538)
-......+...+.++..++ .+...+..+...+...|+.++|.+.+++..+. .||... + ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1223334555666666664 47788899999999999999999999999885 344332 1 11222234457888
Q ss_pred HHHHHHHHHHHhccCCCCCcch--hHHHHHHHHHHhCCCHHHHHHHHH--hcC--CCCcchHHHHHHHHHhcCCccHHHH
Q 044988 271 LGKWIHSYVEENFSVGREPVLV--SLNNALIHMYASCGEIEEAYGVFR--KMQ--RRNTVSWTSMITGFAKQGYAQEALL 344 (538)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~m~--~~~~~~~~~li~~~~~~~~~~~a~~ 344 (538)
.+...++...+. .|.+. ....++...+.+.|++++|.+.|+ ... .|+...+..+...+.+.|+.++|..
T Consensus 317 ~~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 317 KLEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888875 67777 777799999999999999999999 352 4788778888888888886665554
Q ss_pred HHH
Q 044988 345 TFL 347 (538)
Q Consensus 345 ~~~ 347 (538)
+|.
T Consensus 392 ~~~ 394 (409)
T TIGR00540 392 MRQ 394 (409)
T ss_pred HHH
Confidence 443
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-09 Score=97.86 Aligned_cols=296 Identities=14% Similarity=0.082 Sum_probs=180.3
Q ss_pred CCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHH-HHHHHH
Q 044988 150 CSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWT-TMISGC 228 (538)
Q Consensus 150 ~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~li~~~ 228 (538)
..|...+-...-.+.+.|. ...|+..|......-+..|.+.+....-..+.+.+..+....+..+...-. -+..++
T Consensus 161 ~~D~fllYL~Gvv~k~~~~---~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGL---LSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhch---HHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 4455555555555566666 677777766665544445555444443344444443333333322111111 122344
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH------------
Q 044988 229 AQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN------------ 296 (538)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------ 296 (538)
....+.+++..-.+.....|++-+...-+....+.-...++++|+.+|+.+.+.. + -.-.+..+|+
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-P-YRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-P-YRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-C-CcchhHHHHhHHHHHHhhhHHH
Confidence 4444555555555555555554444444444444445556666666666665540 0 0111222332
Q ss_pred -------------------HHHHHHHhCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 044988 297 -------------------ALIHMYASCGEIEEAYGVFRKMQRRN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACS 354 (538)
Q Consensus 297 -------------------~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~ 354 (538)
.+.+.|.-.++.+.|...|++..+-| ...|+.|..-|...
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm------------------ 377 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM------------------ 377 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh------------------
Confidence 33344444555566666666555422 23444444444444
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044988 355 HGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELAS 431 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~ 431 (538)
.+...|.+-++..++ +.| |-..|-.|.++|.-.+...-|+-.|++.. .+| |...|.+|..+|.+.++.++|+
T Consensus 378 --KNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 378 --KNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred --cccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 466667777777774 355 78899999999999999999999999884 444 5789999999999999999999
Q ss_pred HHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 432 QVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.|... ....-.+...+. .|+++|.+.++.++|...+++-.+
T Consensus 453 KCykra-i~~~dte~~~l~-~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 453 KCYKRA-ILLGDTEGSALV-RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHH-HhccccchHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999998 555555556688 999999999999999999888765
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=5.9e-10 Score=96.49 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=202.2
Q ss_pred hhHHHHHhhcCCCCCchhH---HHHHHHHHhcCCHHHHHHHHccCCC-CChH------HHHHHHHHHHHcCCHHHHHHHH
Q 044988 172 VGCARLLFDDMPARSVVSW---NSLLKGYVKRGDIDGAWKIFDEMPH-RNVV------SWTTMISGCAQNGKSRQALSLF 241 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~~~~~~~~~~~a~~~~ 241 (538)
.++|..+|-+|.+.|+.++ -+|.+.|-+.|..|.|+++-+.+.+ ||.. ..-.|..-|...|-+|.|..+|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6667777766666554444 3466677777777888877777654 4432 3445667788999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 044988 242 NEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR 321 (538)
Q Consensus 242 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (538)
..+.+.| ..-......|+..|-...+|++|.++-..+.+.........-..+|.-|...+....+++.|..++.+..+.
T Consensus 131 ~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 131 NQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 9998754 233456778899999999999999999988887221112222456667777777788999999999988763
Q ss_pred Cc---chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--HHHHHHHHHHhhhcCChH
Q 044988 322 NT---VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR--IEHYGCMVDLFSRAGLMD 396 (538)
Q Consensus 322 ~~---~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 396 (538)
|+ ..--.+....... |+++.|.+.++.+.+. .|+ ..+...|..+|...|+.+
T Consensus 210 ~~~cvRAsi~lG~v~~~~--------------------g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 210 DKKCVRASIILGRVELAK--------------------GDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred CccceehhhhhhHHHHhc--------------------cchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHH
Confidence 32 2323333344444 5788888999988876 454 678899999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHH---hcCChHHHHHHHHH
Q 044988 397 EAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYA---AAKRWQDVAAVRQK 472 (538)
Q Consensus 397 ~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~ 472 (538)
+....+.++. ..++...-..+...-....-.+.|..++.+- ..-+|+-.. +. .|++... ..|++.+...++++
T Consensus 267 ~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q-l~r~Pt~~g-f~-rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 267 EGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQ-LRRKPTMRG-FH-RLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH-HhhCCcHHH-HH-HHHHhhhccccccchhhhHHHHHH
Confidence 9999998774 5566666666666666666667777777776 777888777 55 4545443 45678899999999
Q ss_pred HHhCCCCCCC
Q 044988 473 MIKMGVRKPP 482 (538)
Q Consensus 473 m~~~~~~~~~ 482 (538)
|....++..|
T Consensus 344 mvge~l~~~~ 353 (389)
T COG2956 344 MVGEQLRRKP 353 (389)
T ss_pred HHHHHHhhcC
Confidence 9866565554
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.3e-12 Score=82.73 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2e-08 Score=94.95 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhccC-------CCCC
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLD---QVALVAALSACAEIGDLKLGKWIHSYVEENFSV-------GREP 289 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~ 289 (538)
.|..+...|-++|+.+.|..+|++..+...+-- ..+|-.-...=.+..+++.|..+.+........ ++.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 577788888888888888888888866432221 122222223333556677777766665443111 1112
Q ss_pred c------chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHH---HHHhcCCccHHH----------------H
Q 044988 290 V------LVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMIT---GFAKQGYAQEAL----------------L 344 (538)
Q Consensus 290 ~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~~~~~~a~----------------~ 344 (538)
. +..+|..+++..-..|-++....+++++.+--+.|-..+++ -+-.+..++++. .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1 23455566677777888888888888887632222222221 223344444444 3
Q ss_pred HHHHHHHHhc---ccCcHHHHHHHHHHhhhhcCCCcc-HH-HHHHHHHHhhhcCChHHHHHHHHhCC--CCCC--HHHHH
Q 044988 345 TFLGVLSACS---HGGFVDEGRQFFECMNQNWGIKPR-IE-HYGCMVDLFSRAGLMDEAFSLVQNMP--MKPN--DAVLG 415 (538)
Q Consensus 345 ~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~ 415 (538)
.|+.-+.-+. ..-.++.|+.+|++..+ |.+|. .. .|-.....--+.|-...|+.++++.. +++. ...||
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn 626 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4444333332 23478999999999987 55664 22 23333333345688889999999985 3333 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEE
Q 044988 416 SLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL-ALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLH 494 (538)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 494 (538)
..|.-.+..=.+.....+++++ .+.-|++...-. --.++.=.+.|..+.|..++..-.+---+....-+|. ..+
T Consensus 627 i~I~kaae~yGv~~TR~iYeka-Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~----twk 701 (835)
T KOG2047|consen 627 IYIKKAAEIYGVPRTREIYEKA-IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD----TWK 701 (835)
T ss_pred HHHHHHHHHhCCcccHHHHHHH-HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH----HHH
Confidence 8888766666667788899999 666777654222 1345666789999999999987665433233334451 113
Q ss_pred EEEeCCCCCcchHHHHHHH
Q 044988 495 DFVAGDSTYKQASLIYKTL 513 (538)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~l 513 (538)
.|-.. ||..+..-++|
T Consensus 702 ~FEvr---HGnedT~keML 717 (835)
T KOG2047|consen 702 EFEVR---HGNEDTYKEML 717 (835)
T ss_pred HHHHh---cCCHHHHHHHH
Confidence 34444 66644444444
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=2.3e-11 Score=118.28 Aligned_cols=262 Identities=15% Similarity=0.170 Sum_probs=188.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 239 SLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 239 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.++-.+...|+.|+.+||..+|.-||..|+++.|- +|..|.-. ..|.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k----sLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK----SLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc----cccccchhHHHHHhcccccccccCCC------
Confidence 45667888999999999999999999999999998 89888877 78888889999999999988887776
Q ss_pred CCCCcchHHHHHHHHHhcCCccHHH---HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCCh
Q 044988 319 QRRNTVSWTSMITGFAKQGYAQEAL---LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLM 395 (538)
Q Consensus 319 ~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 395 (538)
+|...+|+.+..+|..+|+...-. .....+...++..|.-..-..++..+.-..+.-||..+ .+......|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHH
Confidence 788889999999999999876422 22444455566666665556666554433345566543 44445567888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 396 DEAFSLVQNMPMKPNDAVLGSLLLGCRIHN-NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 396 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.+++++..++......++..+++-+.... .+++-..+.... .+ .|+..+ |. .+..+-..+|+.+-|..++.+|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl-~e-~~~s~~-l~-a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSL-VE-APTSET-LH-AVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHh-hc-CCChHH-HH-HHHHHHHhcCchhhHHHHHHHHH
Confidence 999999988862211112222344444333 344444444444 44 455544 88 77788889999999999999999
Q ss_pred hCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccc
Q 044988 475 KMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGYKPDISELFL 534 (538)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~~p~~~~~~~ 534 (538)
++|+...+..+| ..+.+ -+... .+..+++.|++.|+.||.++.++
T Consensus 232 e~gfpir~HyFw--------pLl~g---~~~~q----~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 232 EKGFPIRAHYFW--------PLLLG---INAAQ----VFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HcCCCcccccch--------hhhhc---Cccch----HHHHHHHHHHHhcCCCCcchhHH
Confidence 999999999999 34444 12222 33344569999999999988765
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=5.5e-09 Score=93.44 Aligned_cols=279 Identities=13% Similarity=0.049 Sum_probs=171.8
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 96 SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
.|+|.+|..+..+-.+.+ .-....|..-..+.-+.||.+.+-.++.+..+..-.++....-+..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra--------------- 160 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA--------------- 160 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH---------------
Confidence 466666666666655443 1222344444455555566666666666655542223333333333
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044988 176 RLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMP---HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD 252 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (538)
......|+++.|..-.++.. ..++........+|.+.|++..+..++..|.+.|+--|
T Consensus 161 -------------------rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 161 -------------------RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred -------------------HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 44444555555555554433 35667788888999999999999999999998886555
Q ss_pred HH-------HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--Cc
Q 044988 253 QV-------ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR--NT 323 (538)
Q Consensus 253 ~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~ 323 (538)
.. +|..++.-+...+..+.-...|+...+. ...++..-.+++.-+.++|+.++|.++..+..+. |.
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-----lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-----LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-----hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 43 4556666666666666656666665554 4444555567788888888888888887776552 22
Q ss_pred chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHH
Q 044988 324 VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQ 403 (538)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (538)
. +..- -.+.+.++...-.+..++-.+.++..| ..+.+|...|.+.+.+.+|.+.|+
T Consensus 297 ~----L~~~------------------~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 297 R----LCRL------------------IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred h----HHHH------------------HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 1111 112233344444555555544433333 566777777778888888877777
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 404 NM-PMKPNDAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 404 ~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
.. ...|+..+|+-+..++.+.|+..+|.+..++..
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55 366777788888888888888887777777764
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2e-12 Score=82.98 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=41.9
Q ss_pred CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHc
Q 044988 81 PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCAR 130 (538)
Q Consensus 81 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 130 (538)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=8.2e-09 Score=92.36 Aligned_cols=274 Identities=9% Similarity=0.044 Sum_probs=215.0
Q ss_pred HHHHHHHc--cCChhHHHHHHhcCCCC---CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHcc
Q 044988 57 KLLAFYVT--SGYLINAHKVFEKTENP---STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARC 131 (538)
Q Consensus 57 ~l~~~~~~--~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 131 (538)
.+..+..+ .|++..|+++..+-.+. ....|-.-..+--+.|+.+.+-.++.+.-+.--.++...+.+..+.....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 34444433 69999999998776532 22234444556678899999999999998742244455566667778899
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC-----------CchhHHHHHHHHHhc
Q 044988 132 GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR-----------SVVSWNSLLKGYVKR 200 (538)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~ 200 (538)
|+.+.|..-+.++.+.+ +-+..+......+|.+.|+ +..+..++..+.+. ...+|+.+++-....
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999886 5667788899999999999 99999999888764 224788888888888
Q ss_pred CCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 044988 201 GDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHS 277 (538)
Q Consensus 201 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 277 (538)
+..+.-...++..+. .++..-..++.-+.+.|+.++|.++..+..+.+..|+.. ..-.+.+.++.+.-.+..+
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHH
Confidence 888888888888874 567777888899999999999999999999988777722 2234567788888777777
Q ss_pred HHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHH
Q 044988 278 YVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
...+. .|.++..+.+|...|.+.+.|.+|...|+...+ |+..+|+-+..++.+.|+..+|.
T Consensus 319 ~~l~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 319 KWLKQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred HHHHh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 77765 677778888999999999999999999997765 78888888888888888555544
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.7e-09 Score=96.57 Aligned_cols=198 Identities=13% Similarity=0.032 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+. .|.+...+..+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHH
Confidence 455556666666666666666666665532 222344444555555555555555555555544 23333344444
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 299 IHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
...+...|++++|.+.+++ ..........
T Consensus 106 ~~~~~~~g~~~~A~~~~~~---------------------------------------------------~~~~~~~~~~ 134 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQ---------------------------------------------------AIEDPLYPQP 134 (234)
T ss_pred HHHHHHcccHHHHHHHHHH---------------------------------------------------HHhccccccc
Confidence 4445555555555444444 3322111112
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++ ....|+++..+. .++.+
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~~~~~ 212 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY-QQTYNQTAESLW-LGIRI 212 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHH
Confidence 3445556666777777777777776653 223 3456666777777778888888888877 555666666455 66777
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
+...|+.++|..+.+.+..
T Consensus 213 ~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 7778888888877776654
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.1e-08 Score=98.15 Aligned_cols=244 Identities=19% Similarity=0.189 Sum_probs=151.6
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHh-----C-CCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHH
Q 044988 119 YTYSFLLSVCARCGLFREGEQVHGRVLAS-----G-YCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNS 192 (538)
Q Consensus 119 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (538)
.+...+...|...|+++.|..+++..++. | ..|...+ ..+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---------------------------------~l~~ 246 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---------------------------------MLNI 246 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---------------------------------HHHH
Confidence 35556777777778888777777766654 1 0111111 1112
Q ss_pred HHHHHHhcCCHHHHHHHHccCC----------CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044988 193 LLKGYVKRGDIDGAWKIFDEMP----------HRN-VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALS 261 (538)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~----------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 261 (538)
+...|...+++++|..+|+++. .|. ..+++.|...|.+.|++++|..++++..+
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------- 311 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------- 311 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------
Confidence 3444555555555555555443 122 23677788889999999999888887754
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccH
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQE 341 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 341 (538)
++...... ..+.-...++.+...++..+++++|..++.+.
T Consensus 312 -------------I~~~~~~~----~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a----------------------- 351 (508)
T KOG1840|consen 312 -------------IYEKLLGA----SHPEVAAQLSELAAILQSMNEYEEAKKLLQKA----------------------- 351 (508)
T ss_pred -------------HHHHhhcc----ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-----------------------
Confidence 11110000 12223334456677777788888888777642
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCC-
Q 044988 342 ALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP---------MKPN- 410 (538)
Q Consensus 342 a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~- 410 (538)
.+++...... ..|+ ..+++.|...|...|++++|.++++++. ..+.
T Consensus 352 ---------------------l~i~~~~~g~--~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 352 ---------------------LKIYLDAPGE--DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred ---------------------HHHHHhhccc--cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 2222211110 1222 4578888888888888888888887763 1122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHch---hccCCCC---cccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLV---AEIDPEQ---AAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
...++.+...|.+.+++++|.++|.+.. ....|+. ..+|. .|+..|.+.|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~-nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL-NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH-HHHHHHHHcccHHHHHHHHHHHH
Confidence 4566777788888888888888888775 3344444 34566 78889999999999999988876
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.7e-07 Score=85.97 Aligned_cols=424 Identities=11% Similarity=0.101 Sum_probs=252.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHH--hcCCCc
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGH--ARSETP 99 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~--~~~~~~ 99 (538)
+=+.-....+++++|.+..+.++..+ +-+..++..-+-+..+.+++++|+.+.+.-........-.+=.+| .+.+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 33445566788999999999999887 446677888888899999999999777654421111111133444 478999
Q ss_pred hHHHHHHHHhHhCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCCCCChhHHHH
Q 044988 100 EKSVYLYKQMIDKETEPDEY-TYSFLLSVCARCGLFREGEQVHGRVLASGYCSN-VFIRTNLMNLYLMSGGECGVGCARL 177 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~a~~ 177 (538)
++|+..++ |..++.. +...-...+-+.|++++|..+|+.+.+++.... ...-..++.+-. .-.+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~~- 162 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQVQ- 162 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhHH-
Confidence 99999988 3444443 667777788999999999999999988763221 222222222111 11111
Q ss_pred HhhcCCCCCchhHHHH---HHHHHhcCCHHHHHHHHccCC--------CC--C---hH-----HHHHHHHHHHHcCCHHH
Q 044988 178 LFDDMPARSVVSWNSL---LKGYVKRGDIDGAWKIFDEMP--------HR--N---VV-----SWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~--~---~~-----~~~~li~~~~~~~~~~~ 236 (538)
+.+..+.....+|..+ ...+...|++.+|+++++... +. + .. .-..+...+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3444444334444444 345677999999999998861 11 1 11 12334556778899999
Q ss_pred HHHHHHHHHHCCCCCCHHH---H-HHHHHHHHccCCh-HH-HH------------HHHHHHHHhccCCCCCcchhHHHHH
Q 044988 237 ALSLFNEMRRARVGLDQVA---L-VAALSACAEIGDL-KL-GK------------WIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~---~-~~li~~~~~~~~~-~~-a~------------~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
|..+|....+.. .+|... + |.++ +.....++ +. +. .....+... ........+.+
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-----qk~~i~~N~~l 315 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-----QKQAIYRNNAL 315 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 999999998865 334322 2 2222 22222211 20 11 111111111 11122222344
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC-cchHHHHHHHHH-----------------hcCCccHHHHHHHHHHHHhcccCcHH
Q 044988 299 IHMYASCGEIEEAYGVFRKMQRRN-TVSWTSMITGFA-----------------KQGYAQEALLTFLGVLSACSHGGFVD 360 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~-----------------~~~~~~~a~~~~~~ll~~~~~~~~~~ 360 (538)
+..|. +..+.+.++........ ...+.+++.... ..+..+.+..+....+......|+++
T Consensus 316 L~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 316 LALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 44443 44566666666665422 122222222221 12222222245555566667789999
Q ss_pred HHHHHHH--------HhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHh
Q 044988 361 EGRQFFE--------CMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-----MKPN----DAVLGSLLLGCRI 423 (538)
Q Consensus 361 ~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~ 423 (538)
.|.+++. .+.+. +..| .+...+...|.+.++.+.|..++.+.. ..+. ..++.-+...-.+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999988 44433 3344 445566777777777666666665542 1122 2344444445567
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.|+.++|..+++++ .+..|++..+.. .++.+|++. +.+.|..+-+.+.
T Consensus 471 ~G~~~ea~s~leel-~k~n~~d~~~l~-~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 471 HGNEEEASSLLEEL-VKFNPNDTDLLV-QLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred cCchHHHHHHHHHH-HHhCCchHHHHH-HHHHHHHhc-CHHHHHHHhhcCC
Confidence 89999999999999 999999998777 777788775 5677777766553
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-07 Score=84.58 Aligned_cols=255 Identities=14% Similarity=0.038 Sum_probs=170.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 186 SVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWT---TMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
|+.....+.+.+...|+.++|...|++...-|+.+.. ...-.+.+.|+.+....+...+.... .-....+..-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 6666677777777777777777777775543332221 11222345667777666666665421 1111222222222
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCc
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~ 339 (538)
....++++.|..+-+...+. .+.+...+-.-...+...|+.++|.-.|+.... | +...|..++..|...|+.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~-----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDS-----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhHHHHHHHHHHHhcc-----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 33456666666666665554 455555554445566677777777777776543 2 566777778888877777
Q ss_pred cHHHHHHHHHHHHhccc----------------CcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHH
Q 044988 340 QEALLTFLGVLSACSHG----------------GFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLV 402 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 402 (538)
.+|..+-+..++++... .--++|..++++-. .+.|+ ....+.+...+...|..++++.++
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 77774444333333222 23578888888776 44776 667888999999999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 403 QNM-PMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 403 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
++. ...||....+.|.+.+...+.+++|...|..+ ..++|++..+..
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A-Lr~dP~~~~sl~ 509 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA-LRQDPKSKRTLR 509 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCccchHHHH
Confidence 886 46799999999999999999999999999999 999999987443
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=5.7e-08 Score=89.12 Aligned_cols=351 Identities=14% Similarity=0.051 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-hhHHhHHHHHH
Q 044988 86 WNQMIRGHARSETPEKSVYLYKQMIDKETEPD-EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSN-VFIRTNLMNLY 163 (538)
Q Consensus 86 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 163 (538)
+-...+-|.++|.+++|++.|.+.++. .|| +.-|.....+|...|++++..+--.+.++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344566788899999999999999984 688 7788888889999999999988888877753 44 45667777777
Q ss_pred HhcCCCCChhHHHHHh------hcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHH--------
Q 044988 164 LMSGGECGVGCARLLF------DDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMIS-------- 226 (538)
Q Consensus 164 ~~~g~~~~~~~a~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~-------- 226 (538)
-..|+ +++|+.=+ +..... +-..++.-..+..-..++.+.+.+-.. |+.....+...
T Consensus 194 E~lg~---~~eal~D~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGK---FDEALFDVTVLCILEGFQNA---SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred Hhhcc---HHHHHHhhhHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 78888 77764311 111110 111111111111122333333331111 22222222111
Q ss_pred ---------------HHHHc--C---CHHHHHHHHHHHHHC-CCCCCHH---------HHHHHHHH--HHccCChHHHHH
Q 044988 227 ---------------GCAQN--G---KSRQALSLFNEMRRA-RVGLDQV---------ALVAALSA--CAEIGDLKLGKW 274 (538)
Q Consensus 227 ---------------~~~~~--~---~~~~a~~~~~~m~~~-g~~p~~~---------~~~~li~~--~~~~~~~~~a~~ 274 (538)
++... + .+..|...+.+-... -..++.. .-..++.+ +.-.|+.-.+..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 11110 1 223333333222110 0111111 11112222 233577777888
Q ss_pred HHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044988 275 IHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLS 351 (538)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~ 351 (538)
-++..++. .|.+...|--+..+|...++.++....|++..+ .|+.+|..-...+.-.
T Consensus 348 d~~~~I~l-----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--------------- 407 (606)
T KOG0547|consen 348 DFDAAIKL-----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--------------- 407 (606)
T ss_pred hHHHHHhc-----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---------------
Confidence 88888776 455555566778888888888888888887765 3444554443333333
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAE 428 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~ 428 (538)
++++.|..=|++.+. +.| +...|-.+.-+.-|.+++++++..|++.. ++.-+..|+.....+..+++++
T Consensus 408 -----~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 408 -----QQYEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred -----HHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 367777788888774 467 46778888888888999999999999885 3334678888999999999999
Q ss_pred HHHHHHHHchhccCCC------CcccHHHHHHHHHH-hcCChHHHHHHHHHHHhC
Q 044988 429 LASQVAQKLVAEIDPE------QAAGYLALVANVYA-AAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 429 ~A~~~~~~~~~~~~p~------~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 476 (538)
+|.+.|+.+ .++.|. +++.++ .-+-+.. =.+++..|..++++..+.
T Consensus 480 ~A~k~YD~a-i~LE~~~~~~~v~~~plV-~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 480 KAVKQYDKA-IELEPREHLIIVNAAPLV-HKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHHHHHH-Hhhccccccccccchhhh-hhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 999999999 888888 554443 1111111 137888899998888763
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-08 Score=93.16 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=145.7
Q ss_pred CCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--C-CchhHH
Q 044988 115 EPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--R-SVVSWN 191 (538)
Q Consensus 115 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~-~~~~~~ 191 (538)
.-+......-..-|-..+++.+..++.+...+.. ++....+..-|.++...|+ ..+-.-+=.++++ | ...+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~---~n~Lf~lsh~LV~~yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK---SNKLFLLSHKLVDLYPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc---cchHHHHHHHHHHhCCCCCcchh
Confidence 4455555556666778889999999999998875 6666677777778888888 5555444444544 2 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcc
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPHRN---VVSWTTMISGCAQNGKSRQALSLFNEMRRA--RVGLDQVALVAALSACAEI 266 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~ 266 (538)
++..-|...|+.++|++.|.+...-| ...|-.+...|+..|..+.|+..|...-+. |.. -.+--+.--|.+.
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t 393 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRT 393 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHh
Confidence 99888888899999999998865422 347999999999999999999999887663 221 1122233346778
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
++++.|..+|.+.... .|.++.+.+-+.-.....+.+.+|..+|+...
T Consensus 394 ~n~kLAe~Ff~~A~ai-----~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-----APSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred ccHHHHHHHHHHHHhc-----CCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9999999999998886 78888888888888888888999999888764
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-07 Score=91.43 Aligned_cols=395 Identities=15% Similarity=0.094 Sum_probs=228.1
Q ss_pred CCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCC-cchHH
Q 044988 47 GFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPD-EYTYS 122 (538)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 122 (538)
.+.-++.+|..+.-+..+.|++..+.+.|++..+ .....|+.+-..+.-.|....|+.+++.-....-.|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3555778888888888888999999998888764 3445688888888888888888888887654322243 33333
Q ss_pred HHHHHHH-ccCCcHHHHHHHHHHHHhC--C--CCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHH
Q 044988 123 FLLSVCA-RCGLFREGEQVHGRVLASG--Y--CSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGY 197 (538)
Q Consensus 123 ~li~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 197 (538)
..-+.|. +.+..+++..+-.+..... . ......|..+.-+|...-.....+.-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se---------------------- 455 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE---------------------- 455 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH----------------------
Confidence 3333443 3456666666666665521 1 12233444444444332220000000
Q ss_pred HhcCCHHHHHHHHccCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 044988 198 VKRGDIDGAWKIFDEMPH-----RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLG 272 (538)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 272 (538)
+.....++.+.+++..+ |++..|- .--|+-.++.+.|++...+..+.+-.-+...+..+.-.+...+++..|
T Consensus 456 -R~~~h~kslqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 -RDALHKKSLQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 00011223333333211 2222221 122333445555555555555544344444444444444455555555
Q ss_pred HHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH--------------------------HHHHhcCC------
Q 044988 273 KWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY--------------------------GVFRKMQR------ 320 (538)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--------------------------~~~~~m~~------ 320 (538)
..+.+...+. .+.+......-+..-...|+.+++. +....+.-
T Consensus 533 l~vvd~al~E-----~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 533 LDVVDAALEE-----FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHH-----hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 5555444443 1111100000011111122222222 22222110
Q ss_pred CCcchHHHHHHHHHhcC---CccHHH-----------------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cH
Q 044988 321 RNTVSWTSMITGFAKQG---YAQEAL-----------------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RI 379 (538)
Q Consensus 321 ~~~~~~~~li~~~~~~~---~~~~a~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 379 (538)
..+.++..+.......+ ..+..+ ..|......+...+..+.|..++.+.... .| ..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~ 684 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---DPLSA 684 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhH
Confidence 11222222222211111 000001 55667778888889999999999888743 45 57
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHchhccCCCCcccHHHHHHH
Q 044988 380 EHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPND-AVLGSLLLGCRIHNNAELASQ--VAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
..|......+...|.+++|.+.|.... ..|+. ....++...+.+.|+...|.. ++..+ .++.|.++.+|. .|+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da-lr~dp~n~eaW~-~LG~ 762 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA-LRLDPLNHEAWY-YLGE 762 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhCCCCHHHHH-HHHH
Confidence 788888889999999999999998764 67774 567788888999998888887 99999 999999999999 9999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 044988 456 VYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++-+.|+.++|.+.|....+-
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHccchHHHHHHHHHHHhh
Confidence 999999999999999988764
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=6.5e-09 Score=92.82 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYL 164 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (538)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34445555555555666655555555432 2233445555555555566666666665555543 233344444555555
Q ss_pred hcCCCCChhHHHHHhhcCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHH
Q 044988 165 MSGGECGVGCARLLFDDMPAR-----SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 165 ~~g~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~ 236 (538)
..|+ +++|.+.+++.... ....+..+...+...|++++|...|++... .+...+..+...+...|++++
T Consensus 111 ~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 111 QQGK---YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred Hccc---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 5555 55555555443321 112233333344444444444444444321 123344445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYV 279 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 279 (538)
|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555443 1223333334444444445555554444433
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1e-06 Score=83.95 Aligned_cols=441 Identities=13% Similarity=0.097 Sum_probs=263.8
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHH
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIR 91 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 91 (538)
.....|..++..+ ..+.+.....+.+.+++. .+--..+....--.+...|+-++|......... .+.+.|..+.-
T Consensus 6 KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 6 KENALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 3344455555554 455677777777777663 222333443333345567888899888876664 45567888888
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
.+-...++++|+.+|......+ +-|...|.-+--.=++.|+++........+.+.. +.....|..+..++.-.|+
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~--- 158 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGE--- 158 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH---
Confidence 8888889999999999988753 3345566665555577788888888877777763 4455678888888888888
Q ss_pred hhHHHHHhhcCCC-----CCchhHHHH------HHHHHhcCCHHHHHHHHccCCC--CChH-HHHHHHHHHHHcCCHHHH
Q 044988 172 VGCARLLFDDMPA-----RSVVSWNSL------LKGYVKRGDIDGAWKIFDEMPH--RNVV-SWTTMISGCAQNGKSRQA 237 (538)
Q Consensus 172 ~~~a~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a 237 (538)
...|..++++..+ ++...+... .....+.|..+.|.+.+..... -|-. .-.+-...+.+.++.++|
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 8888888776543 333333322 2344678888888888877553 1222 233445667888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH-cc-CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 044988 238 LSLFNEMRRARVGLDQVALVAALSACA-EI-GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVF 315 (538)
Q Consensus 238 ~~~~~~m~~~g~~p~~~~~~~li~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (538)
..+|..+... .||..-|...+..+. +. +..+....+|....+.......|..... .++.. ..-.+....++
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl--svl~~---eel~~~vdkyL 311 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL--SVLNG---EELKEIVDKYL 311 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH--HHhCc---chhHHHHHHHH
Confidence 9999999874 677777666555544 23 3333333666666554221111111110 00000 01111122222
Q ss_pred HhcCCC-------Ccc----------hHHHHHHHHHhc------------CCccHH---HHHHHHHHHHhcccCcHHHHH
Q 044988 316 RKMQRR-------NTV----------SWTSMITGFAKQ------------GYAQEA---LLTFLGVLSACSHGGFVDEGR 363 (538)
Q Consensus 316 ~~m~~~-------~~~----------~~~~li~~~~~~------------~~~~~a---~~~~~~ll~~~~~~~~~~~a~ 363 (538)
..+.++ |.. ....++..|... |+.+.+ +-++.-+...+-+.|+++.|.
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 222211 110 111122222211 111111 155666777788888999999
Q ss_pred HHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhc
Q 044988 364 QFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAE 440 (538)
Q Consensus 364 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 440 (538)
..++.... ..|+ +..|..=.+.+...|.+++|...+++.. -.||...-..-..-..++++.++|.++..... .
T Consensus 392 ~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFT-r 467 (700)
T KOG1156|consen 392 EYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFT-R 467 (700)
T ss_pred HHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhh-h
Confidence 99988884 3776 4566666788888999999999988875 33555444355556677888888888888774 2
Q ss_pred cCCCCcc-------cHH-HHHHHHHHhcCChHHHHHHHHHH
Q 044988 441 IDPEQAA-------GYL-ALVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 441 ~~p~~~~-------~~~-~~l~~~~~~~g~~~~A~~~~~~m 473 (538)
..-+... .|. .-=+.+|.++|++.+|++=|..+
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1111111 011 11246677887777777655444
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.7e-08 Score=101.53 Aligned_cols=258 Identities=11% Similarity=0.028 Sum_probs=177.9
Q ss_pred CchhHHHHHHHHHh-----cCCHHHHHHHHccCCC--CC-hHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCC
Q 044988 186 SVVSWNSLLKGYVK-----RGDIDGAWKIFDEMPH--RN-VVSWTTMISGCA---------QNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 186 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g 248 (538)
+...|...+.+-.. .+++++|...|++..+ |+ ...|..+..++. ..+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555566665322 2346788899988764 43 345655555443 2245789999999988753
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcc---h
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTV---S 325 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~ 325 (538)
+-+...+..+...+...|++++|...++.+.+. .|.+...+..+...+...|++++|...+++..+-++. .
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 225666777777788899999999999999987 6777888888999999999999999999988763322 2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHh
Q 044988 326 WTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQN 404 (538)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (538)
+..++..+. ..|++++|...+++..+. . .| +...+..+..+|...|+.++|...+++
T Consensus 409 ~~~~~~~~~--------------------~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 409 GITKLWITY--------------------YHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHH--------------------hccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 222222232 235778888888887754 1 35 355677888899999999999999998
Q ss_pred CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHch--hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 405 MP-MKPNDAV-LGSLLLGCRIHNNAELASQVAQKLV--AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 405 ~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
+. ..|+..+ .+.+...+...| ++|...++.+. ....|.++. .+...|.-.|+-+.+..+ +++.+.|.
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 467 ISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG----LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch----HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 75 3455443 344444566666 47777777765 445555555 345667778888877777 88776543
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.3e-07 Score=80.81 Aligned_cols=430 Identities=11% Similarity=0.024 Sum_probs=233.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCch
Q 044988 24 FSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPE 100 (538)
Q Consensus 24 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 100 (538)
+.-+...++++.|..+++.-...+-.-...+--=+..++.+.|++++|...+..+. .++...+-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 34445566777777777765543322211222224456667788888888776655 245555655655555566777
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhh
Q 044988 101 KSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFD 180 (538)
Q Consensus 101 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~ 180 (538)
+|..+-.... .++-.-..++...-+.++-++-..+.+.+.+. ..-..+|.......-. +.+|..++.
T Consensus 109 eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H---YQeAIdvYk 175 (557)
T KOG3785|consen 109 EAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH---YQEAIDVYK 175 (557)
T ss_pred HHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH---HHHHHHHHH
Confidence 7776654432 22223334444455666666655555554332 1222334444333334 777777777
Q ss_pred cCCCC--CchhHHHH-HHHHHhcCCHHHHHHHHccCCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044988 181 DMPAR--SVVSWNSL-LKGYVKRGDIDGAWKIFDEMPH--RN-VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQV 254 (538)
Q Consensus 181 ~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 254 (538)
+.... +-...|.. .-+|.+..-++-+.++++--.. || +..-|.......+.=+-..|.+-..++...+-+.
T Consensus 176 rvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 176 RVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred HHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 76653 33333333 3355666666666666654332 33 3344444443333323333444444443322111
Q ss_pred HHHHHHHHHHc-----cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHH
Q 044988 255 ALVAALSACAE-----IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSM 329 (538)
Q Consensus 255 ~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 329 (538)
|- .+.-.++ -.+-+.|.+++-.+.+. +|. ..-.|+-.|.+.+++++|..+.+++...++.-|-.-
T Consensus 253 -~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-----IPE---ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilK 322 (557)
T KOG3785|consen 253 -YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-----IPE---ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILK 322 (557)
T ss_pred -ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh-----ChH---hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHH
Confidence 11 1111122 13345666666555554 222 223577778899999999999988865444333322
Q ss_pred HHHHHhcCCccHH-------HHHHH----------------HHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHH
Q 044988 330 ITGFAKQGYAQEA-------LLTFL----------------GVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMV 386 (538)
Q Consensus 330 i~~~~~~~~~~~a-------~~~~~----------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 386 (538)
.-.++..|+--.. ...|. ++.+++.-...+++.+-++..+..- =..-|... -.+.
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~A 400 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLA 400 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHH
Confidence 2223333322211 11111 2222222333556666666665543 22223333 3478
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCCh
Q 044988 387 DLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSL-LLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRW 463 (538)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 463 (538)
++++..|++.+|.++|-.+. .-.|..+|.++ .++|.+.++++.|..++-++ ..|.+......++++-|.+++.+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998775 11355666554 55688999999999888776 23333332333778889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEE
Q 044988 464 QDVAAVRQKMIKMGVRKPPGQSWV 487 (538)
Q Consensus 464 ~~A~~~~~~m~~~~~~~~~~~~~~ 487 (538)
=-|.+.|+.+...+. +| -.|-
T Consensus 478 yyaaKAFd~lE~lDP--~p-EnWe 498 (557)
T KOG3785|consen 478 YYAAKAFDELEILDP--TP-ENWE 498 (557)
T ss_pred HHHHHhhhHHHccCC--Cc-cccC
Confidence 888888888876443 33 4463
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=2.2e-06 Score=81.67 Aligned_cols=412 Identities=15% Similarity=0.180 Sum_probs=259.2
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCCC-----CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTEN-----PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLS 126 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 126 (538)
+..|-..++...+.|++...+..|++... .....|...+...-..+-++-++.+|++.++ .++..-.-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 45556666667777888888888876542 2445788888888888999999999999885 34445777888
Q ss_pred HHHccCCcHHHHHHHHHHHHhC------CCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC--C--chhHHHHHHH
Q 044988 127 VCARCGLFREGEQVHGRVLASG------YCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR--S--VVSWNSLLKG 196 (538)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~--~--~~~~~~li~~ 196 (538)
.++..+++++|.+.+...+... .+.+...|..+-+..++.-+...--....+++.+..+ | ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8899999999999888776432 2445556666666666554411122344555555543 2 3579999999
Q ss_pred HHhcCCHHHHHHHHccCCC--CChHHHHHHHHHHHHc----------------C------CHHHHHHHHHHHHHCCC---
Q 044988 197 YVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGCAQN----------------G------KSRQALSLFNEMRRARV--- 249 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~~m~~~g~--- 249 (538)
|.+.|.+++|..+|++... -.+.-|+.+..+|+.- + +++-.+.-|+.+.+.+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999988543 2222233333333221 1 22334444555444321
Q ss_pred -------CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC-CcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 250 -------GL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE-PVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 250 -------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
.| +..++..-+. +..|+..+-...+..+.+..++... ...-..|..+.+.|...|+++.|+.+|++..+
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11 1222222221 2245566667777777776433222 22345678899999999999999999999887
Q ss_pred CCcc-------hHHHHHHHHHhcCCccHHH--------------------------------HHHHHHHHHhcccCcHHH
Q 044988 321 RNTV-------SWTSMITGFAKQGYAQEAL--------------------------------LTFLGVLSACSHGGFVDE 361 (538)
Q Consensus 321 ~~~~-------~~~~li~~~~~~~~~~~a~--------------------------------~~~~~ll~~~~~~~~~~~ 361 (538)
-+-. +|......=.++.+++.|+ .+|...++.--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 3322 3333333334455555554 344444555555678888
Q ss_pred HHHHHHHhhhhcCCCccH-HHHHHHHHHhhhcCChHHHHHHHHhCC--C-CCCH-HHHHHHHHHHHh---cCCHHHHHHH
Q 044988 362 GRQFFECMNQNWGIKPRI-EHYGCMVDLFSRAGLMDEAFSLVQNMP--M-KPND-AVLGSLLLGCRI---HNNAELASQV 433 (538)
Q Consensus 362 a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~p~~-~~~~~l~~~~~~---~~~~~~A~~~ 433 (538)
...+++.+.+..-..|-. ..|..+ +-...-++++.+.|++-. + -|+. ..|+..+..+.+ ..+++.|..+
T Consensus 496 tk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 888888888763334432 223333 335667899999998753 3 3554 577777665432 3378999999
Q ss_pred HHHchhccCCCCc--ccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 434 AQKLVAEIDPEQA--AGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 434 ~~~~~~~~~p~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
|+++ .+..|+.. +.|. +.+..=.+.|--..|+.++++..
T Consensus 573 FEqa-L~~Cpp~~aKtiyL-lYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQA-LDGCPPEHAKTIYL-LYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHH-HhcCCHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999 66666433 2233 34444446788888999998854
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.9e-09 Score=91.58 Aligned_cols=225 Identities=11% Similarity=0.030 Sum_probs=188.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHH
Q 044988 222 TTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHM 301 (538)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (538)
+.+..+|.+.|.+.+|.+.|+...+. .|-..||..+-..|.+..++..|..++..-.+. .|.++.........
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-----fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-----FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----CCchhhhhhhhHHH
Confidence 56789999999999999999988875 566778999999999999999999999998886 89999988899999
Q ss_pred HHhCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 302 YASCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
+...++.++|.++++...+. ++.+...+..+|.- .++++-|..+++++.+. |+ -+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY--------------------~~~PE~AlryYRRiLqm-G~-~s 357 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY--------------------DNNPEMALRYYRRILQM-GA-QS 357 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc--------------------CCChHHHHHHHHHHHHh-cC-CC
Confidence 99999999999999988763 44444444334433 44777888888888877 64 36
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP---MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALV 453 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l 453 (538)
...|+.+.-+|...+++|-++.-|++.. ..|+ ...|-.+.......||+..|.+.|+-+ ...+|++...+. .|
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla-L~~d~~h~ealn-NL 435 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA-LTSDAQHGEALN-NL 435 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH-hccCcchHHHHH-hH
Confidence 7788888889999999999998888763 2344 567888888888999999999999999 889999999888 88
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 044988 454 ANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 454 ~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
+-.-.+.|+.++|..+++......
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhhC
Confidence 888899999999999999987643
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.4e-07 Score=83.04 Aligned_cols=394 Identities=12% Similarity=0.069 Sum_probs=208.2
Q ss_pred HHHHHccCChhHHHHHHhcCCCC---CcchHHHH-HHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCc
Q 044988 59 LAFYVTSGYLINAHKVFEKTENP---STAIWNQM-IRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLF 134 (538)
Q Consensus 59 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 134 (538)
+.-+....++..|+.+++.-... .....+.. ..++...|++++|+..+..+.+.. .|+...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455566677777766543311 11122222 234456677777777777666543 45555555555555555666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 135 REGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
.+|..+-.+. +.+.-.-..|...--+.++ -++-..+-..+.. ...---++....-..-.+.+|++++.+..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklnd---Ek~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLND---EKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCc---HHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654432 1222223333344445555 3333333222221 12222233333334445667777777655
Q ss_pred C--CChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCc
Q 044988 215 H--RNVVSWTTM-ISGCAQNGKSRQALSLFNEMRRARVGLDQ-VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPV 290 (538)
Q Consensus 215 ~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 290 (538)
. |+-...|.- .-+|.+..-++-+.+++.--.+. .||. ...+.......+.=.-..|++-...+... +...
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN----~~~~ 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADN----IDQE 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc----cccc
Confidence 3 333444433 34555666666666665554442 2332 22222222222322222222222333222 1111
Q ss_pred chhHHHHHHHHHHhCC-----CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH---------HHHHHHHHH----
Q 044988 291 LVSLNNALIHMYASCG-----EIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL---------LTFLGVLSA---- 352 (538)
Q Consensus 291 ~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~ll~~---- 352 (538)
| ..+.-+++.+ +-+.|.+++-.+.+-=+..--.++--|.+.++..+|. ..+.-++.+
T Consensus 253 ----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~a 327 (557)
T KOG3785|consen 253 ----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFA 327 (557)
T ss_pred ----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 1 2333333332 2355666555444322333344555677888888887 112222222
Q ss_pred -----hcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 044988 353 -----CSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIH 424 (538)
Q Consensus 353 -----~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 424 (538)
......+..|.+.|+..-+. +..-| ..--.++...+.-..++++.+-.+..++ +..|...--.+..+.+..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh
Confidence 22233466777777766444 43333 2233455666666678888888888775 333333334567888999
Q ss_pred CCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 425 NNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|++.+|+++|=++ .+.+-.+...|.+.|+.+|.+.|+.+-|.+++-++..
T Consensus 407 gny~eaEelf~~i-s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 407 GNYVEAEELFIRI-SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred cChHHHHHHHhhh-cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 9999999999988 6666555556888999999999999999988776653
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=5.9e-07 Score=87.53 Aligned_cols=248 Identities=17% Similarity=0.143 Sum_probs=133.1
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--CCcc-hHHHHHHHHhcC-----
Q 044988 25 SLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--PSTA-IWNQMIRGHARS----- 96 (538)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~----- 96 (538)
..+...|+++.|.+.++.-.+. +.............+.+.|+.++|..++..+.+ |+-. -|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4566778888888888664443 333456677777888888888888888888773 4333 344444444222
Q ss_pred CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcH-HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 97 ETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFR-EGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 97 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
.+.+...++|+++... -|.......+.-.+.....+. .+...+..+...|+|+ +|+.|-..|..... ..-.
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K---~~~i 162 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK---AAII 162 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH---HHHH
Confidence 2456677788877664 355554444433333322332 3445566666667443 45556666654433 3333
Q ss_pred HHHhhcCCC------------------CCch--hHHHHHHHHHhcCCHHHHHHHHccCCC--CC-hHHHHHHHHHHHHcC
Q 044988 176 RLLFDDMPA------------------RSVV--SWNSLLKGYVKRGDIDGAWKIFDEMPH--RN-VVSWTTMISGCAQNG 232 (538)
Q Consensus 176 ~~~~~~~~~------------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~ 232 (538)
.+++..... |... ++.-+...|...|++++|++.+++..+ |+ +..|..-...+-+.|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 333333210 1111 223334445555666666666555432 33 224455555555566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
++.+|.+.++..+... .-|...=+.....+.+.|+++.|..++..+.+.
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 6666666655555432 223344444444455556666665555555443
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=4.5e-08 Score=94.01 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=152.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhC-----CC-CCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHh-----C-CCC
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDK-----ET-EPDEY-TYSFLLSVCARCGLFREGEQVHGRVLAS-----G-YCS 151 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~ 151 (538)
+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... | -.|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555888999999999999999988653 21 23333 3334666788899999999998888753 2 111
Q ss_pred -chhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChH-HHHHHHH
Q 044988 152 -NVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMP---HRNVV-SWTTMIS 226 (538)
Q Consensus 152 -~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~-~~~~li~ 226 (538)
-..+++.|..+|.+.|+ +++|...+ +.|.+++++.. .+.+. .++.+..
T Consensus 281 ~va~~l~nLa~ly~~~GK---f~EA~~~~------------------------e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGK---FAEAEEYC------------------------ERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred HHHHHHHHHHHHHhccCC---hHHHHHHH------------------------HHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 13456666667777777 77776654 34555555522 13333 3566677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC
Q 044988 227 GCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCG 306 (538)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (538)
.++..+++++|..+++...+ ++...... ..+....+++.|...|...|
T Consensus 334 ~~~~~~~~Eea~~l~q~al~----------------------------i~~~~~g~----~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALK----------------------------IYLDAPGE----DNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHhcchhHHHHHHHHHHH----------------------------HHHhhccc----cchHHHHHHHHHHHHHHHhc
Confidence 78888888888888886543 11111111 23355667888999999999
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHH
Q 044988 307 EIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCM 385 (538)
Q Consensus 307 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 385 (538)
++++|.++++++... .++... +..+ ....++.|
T Consensus 382 k~~ea~~~~k~ai~~--------------------------------------------~~~~~~--~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQI--------------------------------------------LRELLG--KKDYGVGKPLNQL 415 (508)
T ss_pred chhHHHHHHHHHHHH--------------------------------------------HHhccc--CcChhhhHHHHHH
Confidence 999999988876421 111111 1111 13344555
Q ss_pred HHHhhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP--------MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
...|.+.++..+|.++|.+.. -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555555555555554432 1233 3566666666777777777766666654
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.9e-06 Score=74.64 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=170.1
Q ss_pred HhcCCHHHHHHHHccCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHH
Q 044988 198 VKRGDIDGAWKIFDEMP-----HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAA-LSACAEIGDLKL 271 (538)
Q Consensus 198 ~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~ 271 (538)
+-.++-..|...+-... ..|+.....+...+...|+.++|...|+..+. +.|+..+-.-+ .-.+...|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhh
Confidence 34455555555443333 25677788899999999999999999998876 34443321111 112346778887
Q ss_pred HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHH-----
Q 044988 272 GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEAL----- 343 (538)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~----- 343 (538)
...+...+... ...+..-|..-+.......+++.|..+-++..+- ++..|-.-...+...++.++|.
T Consensus 285 ~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 285 DSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 77777666654 3333344434455566778899999988887764 4444444456777888777776
Q ss_pred ---------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHH-HHhh-hcCChHHHHHHHHhC-CCCCC-
Q 044988 344 ---------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMV-DLFS-RAGLMDEAFSLVQNM-PMKPN- 410 (538)
Q Consensus 344 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~- 410 (538)
..|..++.+|...|++.+|.-.-....... .-+..+...+. ..+. ....-++|.++++.- +..|+
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 567777777777777777776666655432 22344444442 2222 222345677777654 35566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
....+.+...|...|..+.++.++++. ....||..- +. .|++.+.....+++|.+.|.....
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~-L~~~~D~~L-H~-~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKH-LIIFPDVNL-HN-HLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHH-HhhccccHH-HH-HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555666677778888888888877 777776655 66 777887777888888877777664
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.3e-09 Score=90.33 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=184.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 044988 87 NQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMS 166 (538)
Q Consensus 87 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (538)
+.+..+|.+.|-+.+|..-|+.-++. .|-+.||..|-+.|.+..++..|+.++.+-++. ++-|+.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788899999999999999888775 678889999999999999999999999888876 466666677788888888
Q ss_pred CCCCChhHHHHHhhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 044988 167 GGECGVGCARLLFDDMPAR---SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSL 240 (538)
Q Consensus 167 g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~ 240 (538)
++ .++|.++++...+. ++.....+..+|.-.++++.|+..++++.+ .+...|+.+.-+|.-.+++|-++--
T Consensus 304 ~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred Hh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 88 99999999887753 556666666778888999999999988654 6778899998888889999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 241 FNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 241 ~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
|++.+..--.|+ ...|-.+-......|++..|.+.|+..... .+.+...+|.|.-.-.+.|++++|..+++..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999887544454 335666666677889999999999998886 7777888889998899999999999999887
Q ss_pred CC
Q 044988 319 QR 320 (538)
Q Consensus 319 ~~ 320 (538)
..
T Consensus 456 ~s 457 (478)
T KOG1129|consen 456 KS 457 (478)
T ss_pred hh
Confidence 65
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=2.2e-08 Score=100.68 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHH
Q 044988 134 FREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIF 210 (538)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 210 (538)
+++|...+++.++.+ +.+...+..+..++...|+ .++|...|++..+ | +...|..+...+...|++++|...+
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555543 3334445555555555555 5555555555433 2 2334444445555555555555555
Q ss_pred ccCCC--CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCC
Q 044988 211 DEMPH--RNVV-SWTTMISGCAQNGKSRQALSLFNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVG 286 (538)
Q Consensus 211 ~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (538)
++..+ |+.. .+..++..+...|++++|...++++.+.. .| +...+..+..++...|+.++|...+..+...
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---- 470 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---- 470 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence 55432 2211 12222223334455555555555544322 12 2222333444444555555555555444332
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044988 287 REPVLVSLNNALIHMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (538)
.|......+.+...|...| +.|...++.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 3333333344444444444 244444443
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=4.8e-06 Score=79.56 Aligned_cols=414 Identities=12% Similarity=0.086 Sum_probs=266.4
Q ss_pred hHHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHH
Q 044988 53 YILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCA 129 (538)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 129 (538)
..|..++.+|- .+++...+++.+.+.+ | ...|.....-.+...|+-++|.+....-.+.. ..+.+.|+.+.-.+.
T Consensus 9 ~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 45556666553 4555555555555442 1 22344444444567889999999888777643 456778888888888
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 044988 130 RCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKI 209 (538)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 209 (538)
...++++|.+.|......+ +.|..++.-+...-+..|+..+.-.....+-+........|..+..++--.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999876 667788888888888888832233333333333334667899999999999999999988
Q ss_pred HccCCC-----CChHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChHHHHHHHH
Q 044988 210 FDEMPH-----RNVVSWTTMI------SGCAQNGKSRQALSLFNEMRRARVGLDQVALV-AALSACAEIGDLKLGKWIHS 277 (538)
Q Consensus 210 ~~~m~~-----~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~~~~ 277 (538)
++...+ |+...|.... ......|..++|++.+..-... ..|...|. .-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 877542 4555444332 3345678888888877655432 22333332 33344678899999999999
Q ss_pred HHHHhccCCCCCcchhHHHHHHHHHHhCCC-HHHHHHHHHhcCC-------C--------CcchHHHHHHHHHhcCCccH
Q 044988 278 YVEENFSVGREPVLVSLNNALIHMYASCGE-IEEAYGVFRKMQR-------R--------NTVSWTSMITGFAKQGYAQE 341 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~-------~--------~~~~~~~li~~~~~~~~~~~ 341 (538)
.+... .|.+...|..+..++.+..+ .+....+|....+ | +...+...++-|.+..-...
T Consensus 244 ~Ll~r-----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 244 RLLER-----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHhh-----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99986 88888888888888863333 3333366665543 1 11122222222322221111
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc-C------------CCccHH--HHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 342 ALLTFLGVLSACSHGGFVDEGRQFFECMNQNW-G------------IKPRIE--HYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 342 a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~------------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
+..+|..+.+-+-.-...+-..++.-.+.... | -+|... ++-.++..|-+.|+++.|..+++...
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 11445555444443322221111111111100 1 145544 44567888999999999999999875
Q ss_pred -CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 407 -MKPND-AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 407 -~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
-.|+. ..|..=.+.+...|+++.|..++++. .+++-.+.. ..+--+.-..++.+.++|.++.....+.|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea-~elD~aDR~-INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEA-QELDTADRA-INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHH-HhccchhHH-HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44663 34444456789999999999999999 777666655 333566778899999999999999987775
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.2e-06 Score=75.47 Aligned_cols=394 Identities=13% Similarity=0.092 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHH-HHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFL-LSV 127 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~ 127 (538)
..-+.+.+..+.+..++++|++++..-.+ | +....+.|..+|-...++..|-++++++-.. -|...-|... ...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 33466666666777777777777765443 2 4445666667777777777777777777653 4554444432 233
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHH--HHhcCCCCChhHHHHHhhcCCC-CCchhHHHHHHHHHhcCCHH
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNL--YLMSGGECGVGCARLLFDDMPA-RSVVSWNSLLKGYVKRGDID 204 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 204 (538)
+-+.+.+..|+.+...|... |+...-..-+.+ ....++ +..+..++++.+. .+..+.+......-+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~D---l~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGD---LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccccc---CcchHHHHHhccCCCccchhccchheeeccccHH
Confidence 45566677777776666442 221111111111 223444 5556666666653 34444444444455666666
Q ss_pred HHHHHHccCCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHH
Q 044988 205 GAWKIFDEMPH----RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKL---GKWIHS 277 (538)
Q Consensus 205 ~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~---a~~~~~ 277 (538)
.|.+-|+...+ .....||..+..| +.|+++.|+++..+..++|++-.+. ++ .|-.-+ +..+-+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDVRSVGN 231 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCchhcccc
Confidence 66666665443 2334555544443 3456666666666666665432111 00 000000 000000
Q ss_pred HHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCccHHH---------
Q 044988 278 YVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-----RNTVSWTSMITGFAKQGYAQEAL--------- 343 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~--------- 343 (538)
...- ....-+..+|.-...+.+.|+++.|.+.+..|+. -|++|...+.-.-. .+++.+..
T Consensus 232 t~~l-----h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 232 TLVL-----HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hHHH-----HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc
Confidence 0000 0001122334444556788999999999999985 36677665532221 12222211
Q ss_pred -----HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC-CccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 044988 344 -----LTFLGVLSACSHGGFVDEGRQFFECMNQNWGI-KPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSL 417 (538)
Q Consensus 344 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 417 (538)
.+|..++-.||+..-++.|-+++.+-... .. -.+...|+.|=....-.-..++|.+-++.+...-....-...
T Consensus 306 nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA 384 (459)
T KOG4340|consen 306 NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA 384 (459)
T ss_pred CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888887777777777543321 11 123334443322222344566666655544210000111111
Q ss_pred HHH-HHhcCCHH----HHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 418 LLG-CRIHNNAE----LASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 418 ~~~-~~~~~~~~----~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.. -.+..+-+ .|++-+++. .+.--+. .. .-++.|++..++.-+.++|..-.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~-LE~YLPV---lM-a~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDET-LEKYLPV---LM-AQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHH---HH-HHHHhhccccccHHHHHHHHHHHh
Confidence 111 11222212 222223332 2211111 22 445778888899999888887654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.4e-07 Score=86.81 Aligned_cols=93 Identities=13% Similarity=-0.142 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
|..+...|...|++++|...|++..+.. +.+...|..+...+...|+++.|...++...+. .|.+..++..+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~ 140 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 4444444444555555555554444421 112344444444444444444444444444443 3333444444444
Q ss_pred HHHhCCCHHHHHHHHHhcC
Q 044988 301 MYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~ 319 (538)
++...|++++|.+.|++..
T Consensus 141 ~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444433
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=7.6e-07 Score=86.77 Aligned_cols=251 Identities=14% Similarity=0.074 Sum_probs=122.2
Q ss_pred HHHHHHccCChhHHHHHHhcCCC--CCcc-hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHH-c---
Q 044988 58 LLAFYVTSGYLINAHKVFEKTEN--PSTA-IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCA-R--- 130 (538)
Q Consensus 58 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~--- 130 (538)
...++...|++++|++.++.... +|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. -
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556677888888888766543 3433 34455667777788888888888887764 55555554444433 1
Q ss_pred --cCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChh-HHHHHhhcCCCCCc-hhHHHHHHHHHhcCCHHHH
Q 044988 131 --CGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVG-CARLLFDDMPARSV-VSWNSLLKGYVKRGDIDGA 206 (538)
Q Consensus 131 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 206 (538)
..+.+...++++++...- |.......+.-.+..... +. .+...+..+..+.+ ..++.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~---F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDE---FKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHH---HHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 124556666777665543 332222222222211111 21 22223333333332 3344444444433333333
Q ss_pred HHHHccCC------------------CCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 044988 207 WKIFDEMP------------------HRNVV--SWTTMISGCAQNGKSRQALSLFNEMRRARVGLD-QVALVAALSACAE 265 (538)
Q Consensus 207 ~~~~~~m~------------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 265 (538)
.+++.... .|... ++.-+...|...|++++|+.++++..+. .|+ ...|..-...+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 33332211 01111 2233344455555555555555555553 333 3344444445555
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN 322 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 322 (538)
.|++.+|....+...+. ...|-.+.+-.+..+.++|++++|.+++..-.+++
T Consensus 241 ~G~~~~Aa~~~~~Ar~L-----D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 241 AGDLKEAAEAMDEAREL-----DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CCCHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 55555555555555554 44444444445555555555555555555544433
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.3e-06 Score=84.42 Aligned_cols=404 Identities=11% Similarity=0.084 Sum_probs=232.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC------------CCCc----
Q 044988 20 TRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE------------NPST---- 83 (538)
Q Consensus 20 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~---- 83 (538)
-..|..-+-+.++.......++...+.|.. ++.++|+|...|..+++-.+- ++.+-+ +.|+
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEE
Confidence 345566677778888888889999999866 899999999999877653321 111111 1111
Q ss_pred -------------------chHHHHHHHHhcCCCchHHHHHH-----------HHhHhCCCC--CCcchHHHHHHHHHcc
Q 044988 84 -------------------AIWNQMIRGHARSETPEKSVYLY-----------KQMIDKETE--PDEYTYSFLLSVCARC 131 (538)
Q Consensus 84 -------------------~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~--p~~~~~~~li~~~~~~ 131 (538)
..|....+-+.+..+.+--.+++ ++..+.+++ -|+...+...+++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 11222333333334433222222 222222221 2444555566666666
Q ss_pred CCcHHHHHHHHHHHHhC--CCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 044988 132 GLFREGEQVHGRVLASG--YCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKI 209 (538)
Q Consensus 132 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 209 (538)
+-+.+-.++++++.-.+ +..+....|.|+-...+.. ...+.+..+++..-|.. .+...+...+-+++|..+
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad----~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~i 1070 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD----RTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAI 1070 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC----hHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHH
Confidence 66666677776665432 2223334444444444443 34444444444432111 112223344455666666
Q ss_pred HccCCC-------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044988 210 FDEMPH-------------------------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACA 264 (538)
Q Consensus 210 ~~~m~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 264 (538)
|++... ..+..|..+..+-.+.|...+|++-|-+. -|...|..++..+.
T Consensus 1071 fkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1071 FKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred HHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 655321 24467889999988899998888877543 36778999999999
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH-
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL- 343 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~- 343 (538)
+.|.+++..+++....+. ...+.+. +.|+-+|++.++..+.++++ ..||......+.+-|...+.++.|.
T Consensus 1145 ~~~~~edLv~yL~MaRkk----~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKK----VREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred hcCcHHHHHHHHHHHHHh----hcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHH
Confidence 999999999999988887 5555555 47999999999988877765 3467777777777777888777776
Q ss_pred -----HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 044988 344 -----LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLL 418 (538)
Q Consensus 344 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 418 (538)
.-|..+...+...|+++.|.+.-++. .+..+|...-.+|...+.+.-|.-. .+.+-....-..-++
T Consensus 1216 ~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1216 LYSNVSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELI 1286 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHH
Confidence 33445556666667776666554332 2344555555555544433322110 000112233344455
Q ss_pred HHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 419 LGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
.-|...|-+++-+.+++.. .++.......|. -|+-.|.+
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~-LGLERAHMgmfT-ELaiLYsk 1325 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAG-LGLERAHMGMFT-ELAILYSK 1325 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhh-hchhHHHHHHHH-HHHHHHHh
Confidence 5555566666666555555 555444444344 44444433
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=5.4e-07 Score=74.95 Aligned_cols=197 Identities=11% Similarity=0.045 Sum_probs=146.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 044988 86 WNQMIRGHARSETPEKSVYLYKQMIDKETEPD-EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYL 164 (538)
Q Consensus 86 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (538)
...|.-.|.+.|+...|..-+++.++. .|+ ..+|..+...|-+.|..+.|.+-|++.++.. +.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445566777888888888888887775 343 4477777777788888888888888877764 555667777777778
Q ss_pred hcCCCCChhHHHHHhhcCCC-C----CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHH
Q 044988 165 MSGGECGVGCARLLFDDMPA-R----SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 165 ~~g~~~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~ 236 (538)
..|. +++|...|++... | -..+|..+.-+..+.|+++.|...|++-.+ ....+.-.+.....+.|++..
T Consensus 115 ~qg~---~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGR---PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCC---hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8887 8888877777654 3 345777777788888888888888888654 234466777788888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSL 294 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 294 (538)
|..+++.....+. ++..+....|..-...|+.+.+.+.-..+.+. +|.+...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~-----fP~s~e~ 243 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL-----FPYSEEY 243 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHH
Confidence 9999988877665 88888888888888888888888777777665 5655443
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=2.7e-06 Score=82.21 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=158.9
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 044988 194 LKGYVKRGDIDGAWKIFDEMPHRNVV--SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKL 271 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 271 (538)
+.+......|.+|+.+++.+...++. -|..+...|++.|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34556677888888888888765554 36777788888899999988886542 34556778888898888
Q ss_pred HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH--------
Q 044988 272 GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL-------- 343 (538)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-------- 343 (538)
|.++-.... +.......|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..++.+
T Consensus 810 a~kla~e~~------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 876654432 4555666666666677788888888888888777764 356677777777665
Q ss_pred ----HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH-----HH-
Q 044988 344 ----LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPND-----AV- 413 (538)
Q Consensus 344 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~- 413 (538)
.+...+..-+...|++..|+..|-+.- -|.+-+.+|-..+-+++|.++-+.-. -.|. +.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flw 947 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLW 947 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHH
Confidence 444555566666777777776665442 23445555666666666666554332 0010 11
Q ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 414 ------------------LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 414 ------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
...-++..+..+.++-|..+-+-. .+-..++... -++.-+...|++++|-+.+-+..+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~---~k~k~~~vhl-k~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA---AKDKMGEVHL-KLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh---hhccCccchh-HHhhhhhhccchhhhhHhhHHHhh
Confidence 111223344555666666665544 2333344455 666778889999999887766654
Q ss_pred C
Q 044988 476 M 476 (538)
Q Consensus 476 ~ 476 (538)
.
T Consensus 1024 l 1024 (1636)
T KOG3616|consen 1024 L 1024 (1636)
T ss_pred c
Confidence 3
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=1.1e-06 Score=73.08 Aligned_cols=198 Identities=13% Similarity=0.051 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALI 299 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (538)
+...|.-+|...|+...|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|+...+. .|.+-.+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCccchhhhhh
Confidence 45667788999999999999999998853 334667788888888999999999999999887 788888889999
Q ss_pred HHHHhCCCHHHHHHHHHhcCC-CC----cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC
Q 044988 300 HMYASCGEIEEAYGVFRKMQR-RN----TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG 374 (538)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (538)
..+|..|++++|...|++... |+ ..+|..+.-+. .+.|+.+.|...|++..+.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca--------------------l~~gq~~~A~~~l~raL~~-- 168 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA--------------------LKAGQFDQAEEYLKRALEL-- 168 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH--------------------hhcCCchhHHHHHHHHHHh--
Confidence 999999999999999998765 42 23444444444 4445778888999888764
Q ss_pred CCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 375 IKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 375 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.|+ ..+.-.+.....+.|++-.|...++... ..++..+.-..|......|+.+.+-++=.++ ....|....
T Consensus 169 -dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL-~r~fP~s~e 242 (250)
T COG3063 169 -DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL-QRLFPYSEE 242 (250)
T ss_pred -CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCcHH
Confidence 554 6677888888999999999999998773 4577888777888889999999998888888 888888776
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4.1e-06 Score=82.04 Aligned_cols=235 Identities=16% Similarity=0.164 Sum_probs=155.7
Q ss_pred ChhHHHHHHH--HHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhC-C--------CCCCcc
Q 044988 51 KNYILAKLLA--FYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDK-E--------TEPDEY 119 (538)
Q Consensus 51 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~ 119 (538)
|+.+-.++++ .|..-|+.+.|.+-.+.++ +...|..|.+.|++..+.+-|.-++-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555554 4566788888877666553 4567888999999988888888777777432 1 1222 3
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC-CchhHHHHHHHHH
Q 044988 120 TYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR-SVVSWNSLLKGYV 198 (538)
Q Consensus 120 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~ 198 (538)
+=..+.-.....|.+++|+.+|.+-++.+ .|=..|-..|. +++|.++-+.-..- =..+|.....-+-
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~---w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGM---WSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhccc---HHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 33333334567788889988888877643 24456667777 88887765543321 2245666666667
Q ss_pred hcCCHHHHHHHHccCCC-----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044988 199 KRGDIDGAWKIFDEMPH-----------------------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVA 255 (538)
Q Consensus 199 ~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 255 (538)
..++.+.|++.|++-.. .|...|......+-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 77888888888877542 2344455555666667888888888877654
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 256 LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 256 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
|..+++..|-.|+.++|.++-++- ..-...| .|.+.|...|++.+|...|.+..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es---------gd~AAcY-hlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES---------GDKAACY-HLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc---------ccHHHHH-HHHHHhhhhHHHHHHHHHHHHHH
Confidence 455666667788888887765432 1223333 68889999999999999888764
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-05 Score=76.21 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHhhhhcCCCcc--HHHHHHHHHHhhhcCChHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHhcCC
Q 044988 358 FVDEGRQFFECMNQNWGIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQ--------NMP-MKPNDAVLGSLLLGCRIHNN 426 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~~p~~~~~~~l~~~~~~~~~ 426 (538)
.+..+..++....+. .|. ..+.-.+++.....|+++.|++++. .+. +.-.+.+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC
Confidence 456667777766654 343 4456667778889999999999998 332 22223333445555667676
Q ss_pred HHHHHHHHHHch---hccCCCC---cccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 427 AELASQVAQKLV---AEIDPEQ---AAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 427 ~~~A~~~~~~~~---~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.+.|..++..+. ....+.. ...+. .++..-.+.|.-++|..+++++.+.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~-~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMR-EAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHH-HHhHHHHhcCchHHHHHHHHHHHHh
Confidence 666666666664 1222222 22233 4455566789999999999999874
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.8e-06 Score=78.57 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCCh
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRW 463 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 463 (538)
...+.+.|++..|+..|.++. ..| |...|.....+|.+.|.+..|+.-.+.. .++.|+....|. .=+.++.-..+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~-ieL~p~~~kgy~-RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKC-IELDPNFIKAYL-RKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCchHHHHHH-HHHHHHHHHHHH
Confidence 444556666666666666653 223 3556666666666666666666666666 666666666666 555566666666
Q ss_pred HHHHHHHHHHHhC
Q 044988 464 QDVAAVRQKMIKM 476 (538)
Q Consensus 464 ~~A~~~~~~m~~~ 476 (538)
++|.+.|.+-.+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665553
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=1.9e-06 Score=79.41 Aligned_cols=138 Identities=12% Similarity=-0.058 Sum_probs=90.9
Q ss_pred hhHHHHHhhcCCCC-------CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHH
Q 044988 172 VGCARLLFDDMPAR-------SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLF 241 (538)
Q Consensus 172 ~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 241 (538)
.+.+..-+.++... ....|..+...+...|+.++|...|++..+ .+...|+.+...+...|++++|...|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55566555555531 134567777778888888888888877653 34567888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044988 242 NEMRRARVGLD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 242 ~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (538)
++..+. .|+ ..++..+..++...|++++|...++...+. .|.+.. .......+...++.++|...|.+
T Consensus 122 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 122 DSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPY-RALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHccCCHHHHHHHHHH
Confidence 888763 443 556667777777888888888888888775 343331 11112223345567777776654
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=6e-06 Score=79.89 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC
Q 044988 227 GCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCG 306 (538)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (538)
+....+++.+|+.+++.++.... -..-|..+...|+..|+++.|+++|-..- .++--|.+|.+.|
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccc
Confidence 34445566666666666655322 22335556666667777777666654331 1244566677777
Q ss_pred CHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCccHHHHHHHHH------HHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 307 EIEEAYGVFRKMQRRN--TVSWTSMITGFAKQGYAQEALLTFLGV------LSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 307 ~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
+|+.|.++-.+...|. +..|-+-..-+-.+|++.+|...|..+ +..|.+.|..+...++..+- .|+
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~------h~d 879 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH------HGD 879 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh------Chh
Confidence 7777777666665543 233444444455566665555333211 22222222222222222111 122
Q ss_pred --HHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044988 379 --IEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQ 435 (538)
Q Consensus 379 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 435 (538)
..|...+..-|...|++..|..-|-+.. -|.+.+..|...+-+++|-++.+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 2233444455555566666655554432 24444455555555555555444
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=1.1e-05 Score=71.17 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=43.2
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHH---HH
Q 044988 120 TYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLL---KG 196 (538)
Q Consensus 120 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li---~~ 196 (538)
-.--+.+.+...|++..|+.-|...++.+ +.+-.++-.-...|...|+ -..|+.-|.+..+..+..+.+-+ ..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGk---sk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGK---SKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcC---CccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445555555666666666665555432 1222233333445555555 44444444444432222222222 24
Q ss_pred HHhcCCHHHHHHHHccCC
Q 044988 197 YVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~ 214 (538)
+.+.|.++.|..-|+.+.
T Consensus 116 llK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVL 133 (504)
T ss_pred hhhcccHHHHHHHHHHHH
Confidence 455666666666665544
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.6e-05 Score=76.69 Aligned_cols=197 Identities=12% Similarity=0.107 Sum_probs=125.9
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC-------------CCcchHHHHHHHH
Q 044988 27 LQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN-------------PSTAIWNQMIRGH 93 (538)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~li~~~ 93 (538)
+...|+++.|..-.+.+. +..+|..+..++.+..+++-|.-.+-.|.. ++ ..-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 344577777766665443 456899999999998888877766666542 22 2222222223
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChh
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVG 173 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 173 (538)
.+.|-.++|..+|.+.++ |..|=+.|-..|.+++|.++-+.--+.-+ ..+|.....-+-..++ ++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D---i~ 875 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD---IE 875 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc---HH
Confidence 466788888888888775 34455566777888888776543222111 1244445555555666 77
Q ss_pred HHHHHhhcCCC-----------------------CCchhHHHHHHHHHhcCCHHHHHHHHccCCC---------------
Q 044988 174 CARLLFDDMPA-----------------------RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--------------- 215 (538)
Q Consensus 174 ~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------- 215 (538)
.|++.|++... +|...|.-...-+-..|+++.|+.+|....+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 77766665432 1444555555666678888888888776531
Q ss_pred ---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044988 216 ---------RNVVSWTTMISGCAQNGKSRQALSLFNEMR 245 (538)
Q Consensus 216 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (538)
.|......+.+.|-+.|++.+|..+|.+.+
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344566678888888899999999988875
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=2.8e-07 Score=83.56 Aligned_cols=228 Identities=13% Similarity=0.142 Sum_probs=140.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCh
Q 044988 191 NSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALV-AALSACAEIGDL 269 (538)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~ 269 (538)
.-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++....+..++..++. .....+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3445566666666665555544445555555555444443345555555555444333332332322 222345567888
Q ss_pred HHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCccHHHHHHHH
Q 044988 270 KLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR-NTVSWTSMITGFAKQGYAQEALLTFLG 348 (538)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 348 (538)
+.|.+++.. + .+.......+..|.+.++++.|.+.++.|.+- +..+...+..++..
T Consensus 119 ~~AL~~l~~--------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~------------- 175 (290)
T PF04733_consen 119 EEALKLLHK--------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN------------- 175 (290)
T ss_dssp HHHHCCCTT--------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHc--------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------
Confidence 877665431 1 34455556788899999999999999988763 33344444444432
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNN 426 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~ 426 (538)
...-...+.+|..+|+++.+++ .+++.+.+.+..++...|++++|.+++++.. ..|+ ..++..++.+....|+
T Consensus 176 ---l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 176 ---LATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp ---HHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred ---HHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 1111236788889999987753 5678889999999999999999999998863 3344 5677777888788887
Q ss_pred H-HHHHHHHHHchhccCCCCcc
Q 044988 427 A-ELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 427 ~-~~A~~~~~~~~~~~~p~~~~ 447 (538)
. +.+.+++.++ ....|+++.
T Consensus 251 ~~~~~~~~l~qL-~~~~p~h~~ 271 (290)
T PF04733_consen 251 PTEAAERYLSQL-KQSNPNHPL 271 (290)
T ss_dssp TCHHHHHHHHHC-HHHTTTSHH
T ss_pred ChhHHHHHHHHH-HHhCCCChH
Confidence 7 7788999999 777888654
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.00011 Score=79.76 Aligned_cols=333 Identities=11% Similarity=0.016 Sum_probs=190.3
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----CC---c-----hhHHHHHH
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----RS---V-----VSWNSLLK 195 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~---~-----~~~~~li~ 195 (538)
....|+++.+..+++.+.......+..........+...|+ ++++...+..... .+ . .....+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR---YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC---HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34456666655555544211111222223334445556666 6666666554321 00 0 11112233
Q ss_pred HHHhcCCHHHHHHHHccCCC----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 044988 196 GYVKRGDIDGAWKIFDEMPH----RNV----VSWTTMISGCAQNGKSRQALSLFNEMRRA----RV-GLDQVALVAALSA 262 (538)
Q Consensus 196 ~~~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~ 262 (538)
.+...|+++.|...+++... .+. ...+.+...+...|++++|...+++.... |- .+...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45678888888887776432 221 24455666778899999999999888652 11 1112344555667
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCC---cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREP---VLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 339 (538)
+...|+++.|...++.........+.+ .....+..+...+...|++++|...+.+...-.. ..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-----------~~~~~ 609 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-----------NYQPQ 609 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-----------ccCch
Confidence 788999999999988877653322221 1223344566777888999999999887643100 00000
Q ss_pred cHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCccH-H-HHHHHHHHhhhcCChHHHHHHHHhCCCC--CCH-
Q 044988 340 QEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW---GIKPRI-E-HYGCMVDLFSRAGLMDEAFSLVQNMPMK--PND- 411 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~- 411 (538)
.....+..+.......|+.+.|...+....... +..... . .....+..+...|+.+.|.+++...... ...
T Consensus 610 -~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 610 -QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 000122223334445567777777776664321 111111 0 0111224455688999999998776411 111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHchhcc------CCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 412 ---AVLGSLLLGCRIHNNAELASQVAQKLVAEI------DPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 412 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
..+..+..++...|++++|...++++. .. .+....+.. .++.++.+.|+.++|...+.+..+..
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al-~~~~~~g~~~~~a~~~~-~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELN-ENARSLRLMSDLNRNLI-LLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 113455667888999999999999885 21 122223355 77888999999999999999987643
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=1.9e-05 Score=75.55 Aligned_cols=190 Identities=15% Similarity=0.122 Sum_probs=98.2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChh-HHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHH
Q 044988 18 LTTRQIFSLLQIRNTTKTLFQIHSQIIINGF-SQKNY-ILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRG 92 (538)
Q Consensus 18 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 92 (538)
..+..+...+...++.+.+...+....+... .++.. ........+...|++++|...+++..+ | +...+.. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 3444555555556666665555555444332 22221 122223344566777777777766542 2 2223331 112
Q ss_pred Hhc----CCCchHHHHHHHHhHhCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 044988 93 HAR----SETPEKSVYLYKQMIDKETEPDE-YTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSG 167 (538)
Q Consensus 93 ~~~----~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (538)
+.. .+....+.+.++. .....|+. .....+...+...|+++.|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 3334444444433 11112222 233344456677777777777777777764 444556666777777777
Q ss_pred CCCChhHHHHHhhcCCCC-----Cc--hhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 168 GECGVGCARLLFDDMPAR-----SV--VSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
+ +++|...+++..+. +. ..|..+...+...|++++|..++++..
T Consensus 163 ~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 R---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred C---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7 77777776665431 11 123345555666666666666666543
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=0.00011 Score=72.02 Aligned_cols=411 Identities=14% Similarity=0.050 Sum_probs=238.0
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHHH
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN----PSTAIWNQMI 90 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li 90 (538)
-++..|..+.-++..+|++..+-+.|++....-+. ....|..+...|...|.--.|..+.+.-.+ |+..+--.++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35678888999999999999999999998876544 567888999999999999999999986553 3323333333
Q ss_pred -HHHh-cCCCchHHHHHHHHhHhC--CC--CCCcchHHHHHHHHHccC-----------CcHHHHHHHHHHHHhCCCCch
Q 044988 91 -RGHA-RSETPEKSVYLYKQMIDK--ET--EPDEYTYSFLLSVCARCG-----------LFREGEQVHGRVLASGYCSNV 153 (538)
Q Consensus 91 -~~~~-~~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~ 153 (538)
..|. +.+..+++++.-.+.... +. ...+..|..+.-+|...- ...++.+.+++..+.+ +.|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 3333 356777777777666551 11 123445555554443221 1345667777777665 2232
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChHHHHHHHH
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPA----RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR---NVVSWTTMIS 226 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~ 226 (538)
.+...+.--|+..++ ++.|.....+..+ .+...|..+.-.+...+++..|+.+.+...+. |......-+.
T Consensus 479 ~~if~lalq~A~~R~---l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQ---LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHHHHHHHHHHHh---HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333334445556666 7777776665443 36677888877888888888888877764431 1111111222
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh
Q 044988 227 GCAQNGKSRQALSLFNEMRRA--RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS 304 (538)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (538)
.-...++.++++.....+..- ...|-..+ ++-....+....+.-. .+.......++..+......
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la--~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLA--LSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccC--cccccccchhhHHHHHHHHh
Confidence 233457777777777766541 00000000 0000000000000000 00011111122111111111
Q ss_pred CC---CHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHH
Q 044988 305 CG---EIEEAYGVFRKMQRRN------TVSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDE 361 (538)
Q Consensus 305 ~g---~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~ 361 (538)
.+ ..+.....+.....|+ ...|......+.+.+..++|. ..|......+...|...+
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 11 1111111111111122 113334445555566666554 233333344555678888
Q ss_pred HHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044988 362 GRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFS--LVQNM-PMKP-NDAVLGSLLLGCRIHNNAELASQVAQK 436 (538)
Q Consensus 362 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (538)
|.+.|.... -+.|+ +.+..++..++.+.|+..-|.. ++..+ +..| +...|-.+...+.+.|+.++|.+.|..
T Consensus 703 A~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 888888776 45786 7788999999999998777777 77776 3444 588999999999999999999999999
Q ss_pred chhccCCCCcc
Q 044988 437 LVAEIDPEQAA 447 (538)
Q Consensus 437 ~~~~~~p~~~~ 447 (538)
+ ..+.+.+|.
T Consensus 780 a-~qLe~S~PV 789 (799)
T KOG4162|consen 780 A-LQLEESNPV 789 (799)
T ss_pred H-HhhccCCCc
Confidence 9 777776664
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=1.5e-06 Score=78.80 Aligned_cols=243 Identities=13% Similarity=0.041 Sum_probs=121.9
Q ss_pred HHccCChhHHHHHHhcCCCC----CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHH
Q 044988 62 YVTSGYLINAHKVFEKTENP----STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREG 137 (538)
Q Consensus 62 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 137 (538)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .+..... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666665444 1111 1223334556666666655433 3333322 45555554444444333333344
Q ss_pred HHHHHHHHHhCCC-CchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 044988 138 EQVHGRVLASGYC-SNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR 216 (538)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 216 (538)
..-+++....... .+.........++...|+ +++|++++... .+.......+..|.+.++++.|.+.++.|.+-
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3333333222222 222333333344555666 77777666654 34455556666777777777777777776642
Q ss_pred -ChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc
Q 044988 217 -NVVSWTTMISGCA----QNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 217 -~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
+..+...+..++. ..+.+.+|..+|+++.+ ...++..+.+.+..++...|++++|..++....+. .|.+
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~ 234 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPND 234 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCH
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCC
Confidence 1222333333332 23356777777777644 34566666666666677777777777776665543 4555
Q ss_pred hhHHHHHHHHHHhCCCH-HHHHHHHHhcCC
Q 044988 292 VSLNNALIHMYASCGEI-EEAYGVFRKMQR 320 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 320 (538)
..+...++.+..-.|+. +.+.+.+.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555566665566655 556666666553
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=4e-05 Score=73.34 Aligned_cols=260 Identities=10% Similarity=0.016 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchH---HHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-chHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIW---NQMIRGHARSETPEKSVYLYKQMIDKETEPDE-YTYSFL 124 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l 124 (538)
+..+..+...+...|+.+.+...+.... +++...+ ......+...|++++|.+.+++..+. .|+. ..+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 3455566666667777777666655433 2232222 22233456789999999999998875 3443 34442
Q ss_pred HHHHH----ccCCcHHHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHH
Q 044988 125 LSVCA----RCGLFREGEQVHGRVLASGYCSN-VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKG 196 (538)
Q Consensus 125 i~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 196 (538)
...+. ..+..+.+.+.+.. ..+..|+ ......+...+...|+ +++|...+++..+ .+...+..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 22222 24455555555544 1122233 3455667788999999 9999999998875 256678888899
Q ss_pred HHhcCCHHHHHHHHccCCC-----CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHc
Q 044988 197 YVKRGDIDGAWKIFDEMPH-----RNV--VSWTTMISGCAQNGKSRQALSLFNEMRRARV-GLDQVAL-V--AALSACAE 265 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~-----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~ 265 (538)
+...|++++|...+++... ++. ..|..+...+...|++++|..+|++...... .+..... . .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 9999999999999998654 222 2455788889999999999999999864322 2222221 1 22333334
Q ss_pred cCChHHHHHHHHHHHHhccCC-CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 266 IGDLKLGKWIHSYVEENFSVG-REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
.|....+.+. +.+....... ..+...........++...|+.+.|...++.+..
T Consensus 238 ~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 238 AGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred cCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4443333332 1111110000 0011222223567777889999999999988754
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1e-06 Score=82.99 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=169.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC
Q 044988 227 GCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCG 306 (538)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (538)
-+.+.|++.+|.-.|+..++.. +-+...|..|-......++-..|+..+.+..+. .|.+..+..+|.-.|...|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----dP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL-----DPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhh
Confidence 3567888888888888887653 335666777777777778888888888888886 7888888888888888888
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHH
Q 044988 307 EIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMV 386 (538)
Q Consensus 307 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 386 (538)
.-..|...|+.-....+. |..+..+ ...++... + ..+.....+....++|-++....+..+|..+...|.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~-y~~l~~a-~~~~~~~~---~-----~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPK-YVHLVSA-GENEDFEN---T-----KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred hHHHHHHHHHHHHHhCcc-chhcccc-CccccccC---C-----cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 888888888765321100 0000000 00000000 0 011111234555666666666546567888899999
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChH
Q 044988 387 DLFSRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQ 464 (538)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 464 (538)
-.|--.|.+++|...|+.. .++|+ ..+||.|...++...+.++|+..|+++ .++.|....+.. .|+..|...|.++
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA-LqLqP~yVR~Ry-NlgIS~mNlG~yk 515 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA-LQLQPGYVRVRY-NLGISCMNLGAYK 515 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH-HhcCCCeeeeeh-hhhhhhhhhhhHH
Confidence 9999999999999999987 36665 679999999999999999999999999 999999999888 8999999999999
Q ss_pred HHHHHHHHHHh
Q 044988 465 DVAAVRQKMIK 475 (538)
Q Consensus 465 ~A~~~~~~m~~ 475 (538)
+|.+.|-....
T Consensus 516 EA~~hlL~AL~ 526 (579)
T KOG1125|consen 516 EAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHH
Confidence 99998876653
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=3e-08 Score=56.88 Aligned_cols=33 Identities=36% Similarity=0.733 Sum_probs=29.5
Q ss_pred CCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 374 GIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
|+.||..+|++||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788999999999999999999999999998884
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.4e-05 Score=80.23 Aligned_cols=405 Identities=13% Similarity=0.039 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCC-CCCCcchHHHHHHHH
Q 044988 53 YILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKE-TEPDEYTYSFLLSVC 128 (538)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~ 128 (538)
..|..|-..|....+...|.+.|+...+ .+...+......|++..+++.|..+.-..-+.. ...-...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3566666666666666666666665553 344456666677777777777766632222110 000112233333445
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchh-HHHH--HHHHHhcCCHHH
Q 044988 129 ARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVS-WNSL--LKGYVKRGDIDG 205 (538)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~ 205 (538)
...++...+..-|+...+.. +.|...|..++.+|.++|. +..|.++|.+...-++.. |... .-..+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 66666666666666666654 4555667777777777777 777777776655433222 2111 122344566666
Q ss_pred HHHHHccCCC----------CChHHHHHHHHHHHHcCCHH--------------------------------HHHHHHHH
Q 044988 206 AWKIFDEMPH----------RNVVSWTTMISGCAQNGKSR--------------------------------QALSLFNE 243 (538)
Q Consensus 206 A~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~--------------------------------~a~~~~~~ 243 (538)
|...+..... .-..++-.+...+.-.|-.. .|..+|-.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 6655554431 00111211111111112111 22222222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCh---H---HHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh----C----CCHH
Q 044988 244 MRRARVGLDQVALVAALSACAEIGDL---K---LGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS----C----GEIE 309 (538)
Q Consensus 244 m~~~g~~p~~~~~~~li~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~ 309 (538)
.. .. .|+......+..-..+.+.. + .+.+.+-.-.+ ...+...|..|+..|.+ + .+..
T Consensus 729 ~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls------l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 729 EE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS------LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred hc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH------HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 21 01 22222222222212222222 1 11111111111 12223444445444443 2 2334
Q ss_pred HHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 310 EAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 310 ~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.|...+.+..+ .+..+|+.|.-. ...|.+.-|. .+|..+.-.|....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q-- 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ-- 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh--
Confidence 67777776554 577788877655 4445555554 344455556667789999999999887
Q ss_pred cCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch------
Q 044988 373 WGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNM-----P--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV------ 438 (538)
Q Consensus 373 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------ 438 (538)
.+.| |...|--....-...|+.-++..+|..- . .-|+..-|-....-....|+.++-+...+++.
T Consensus 878 -SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 -SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred -hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 4466 5666665555556778888888888652 1 22454444444444566666655444433332
Q ss_pred ---hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 439 ---AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 439 ---~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.+..|+...+|. ..+......+.+++|.++..+..
T Consensus 957 ~~yf~~~p~~~fAy~-~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYA-ANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhcCcchhHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 567788877787 77777778888888777766653
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.0003 Score=71.06 Aligned_cols=318 Identities=13% Similarity=0.126 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCC--CChhHHHHHHHHHHccCChhHHHHHHhcCC-CCCcch-----HHHHHHHHhcCCCchHHHHHH
Q 044988 35 TLFQIHSQIIINGFS--QKNYILAKLLAFYVTSGYLINAHKVFEKTE-NPSTAI-----WNQMIRGHARSETPEKSVYLY 106 (538)
Q Consensus 35 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~-----~~~li~~~~~~~~~~~a~~~~ 106 (538)
.-+++.++..+.+++ .|+...+..+.++...+-+.+-+++++++. .|++.+ -|.||-...+ -+..+..+..
T Consensus 965 ~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI 1043 (1666)
T KOG0985|consen 965 YRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYI 1043 (1666)
T ss_pred HHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHH
Confidence 346778888877754 467778888899999999999999998876 444443 3344433333 3555666666
Q ss_pred HHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCC
Q 044988 107 KQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARS 186 (538)
Q Consensus 107 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~ 186 (538)
+++-..+ .|+ +...+...+-+++|..+|.+. ..+....+.|+. ..+. ++.|.+.-++..+|
T Consensus 1044 ~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~---ldRA~efAe~~n~p- 1104 (1666)
T KOG0985|consen 1044 NRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGS---LDRAYEFAERCNEP- 1104 (1666)
T ss_pred HHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hhhh---HHHHHHHHHhhCCh-
Confidence 6655432 222 233344555567777666654 233333333333 2233 56666655555443
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEI 266 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 266 (538)
..|..+..+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++-.+++...++..-.|... +.+|-+|++.
T Consensus 1105 -~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1105 -AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred -HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 45777777777777777777766553 344567777777777777777777777666655555444 3566677777
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC------------------------CCC
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ------------------------RRN 322 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------------------------~~~ 322 (538)
+++.+.+.+. ..++..-...+.+-|...|.++.|.-+|..+. ..+
T Consensus 1180 ~rl~elE~fi-----------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1180 NRLTELEEFI-----------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred chHHHHHHHh-----------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 7665544332 11122222244444445555555544443321 023
Q ss_pred cchHHHHHHHHHhcCCccHHH----------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhh
Q 044988 323 TVSWTSMITGFAKQGYAQEAL----------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSR 391 (538)
Q Consensus 323 ~~~~~~li~~~~~~~~~~~a~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 391 (538)
..+|.-+-.+|...+.+.-|. .-...++..|...|-+++...+++... |+.- ....|+.|.-.|.+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHh
Confidence 445555555555555554444 334455566666666666666665544 3332 23445555555554
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=5.3e-06 Score=85.86 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=154.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFA 334 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 334 (538)
.|..-|.-....++++.|+.+.+++...+.......-...|.++++.-..-|.-+...++|+++.+
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-------------- 1525 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-------------- 1525 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--------------
Confidence 344455555666677777777766666543333333445666666666666666667777766543
Q ss_pred hcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC---
Q 044988 335 KQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN--- 410 (538)
Q Consensus 335 ~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--- 410 (538)
+-+|..+|..|...|.+.+..++|.++++.|.++++ -...+|..+++.+.+..+-+.|..++.+.. .-|-
T Consensus 1526 ----ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1526 ----YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred ----hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 223335677777777777899999999999999876 457789999999999999999999998763 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRK 480 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 480 (538)
.......+..-.+.|+.+++..+|+.. ..-.|.....|. .+++.-.++|+.+.++.+|++....++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgl-l~ayPKRtDlW~-VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGL-LSAYPKRTDLWS-VYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHH-HhhCccchhHHH-HHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 445556666778999999999999999 888999999899 99999999999999999999999988854
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=6.7e-08 Score=55.44 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 044988 113 ETEPDEYTYSFLLSVCARCGLFREGEQVHGRV 144 (538)
Q Consensus 113 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 144 (538)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.52 E-value=0.0001 Score=65.25 Aligned_cols=326 Identities=13% Similarity=0.091 Sum_probs=211.5
Q ss_pred cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHH---HHHHccCCcHHHHHHHHHHHHhCCCCchh-HHhH
Q 044988 83 TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLL---SVCARCGLFREGEQVHGRVLASGYCSNVF-IRTN 158 (538)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 158 (538)
+.-.--+...+...|++..|+.-|....+ .|+..|.++. ..|...|+-..|+.=+...++. .||-. .--.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 33455677888889999999999998875 4444555554 4578889989998888888875 57643 3334
Q ss_pred HHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHH
Q 044988 159 LMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQAL 238 (538)
Q Consensus 159 l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 238 (538)
-...+.+.|. ++.|..-|+...+.++.. +....++.+.-..++- ......+..+...|+...|+
T Consensus 112 Rg~vllK~Ge---le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 112 RGVVLLKQGE---LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hchhhhhccc---HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHH
Confidence 4567889999 999999998877543211 1111111111111111 12223455566789999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 239 SLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 239 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.....+.+- .+.|...|..-..+|...|++..|..-+..+.+. ....+...| -+...+...|+.+.+....++.
T Consensus 176 ~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~y-kis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 176 EMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHY-KISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence 999998873 2346666777778888999999998888887776 344444444 6778888899999998888887
Q ss_pred CC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-----HHHHHHHHHHhhh
Q 044988 319 QR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-----IEHYGCMVDLFSR 391 (538)
Q Consensus 319 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~ 391 (538)
.+ ||-..+-. .|-+..+..+.+.. +......+++.++.+-.+...+. .|. ...+..+-.++..
T Consensus 250 LKldpdHK~Cf~---~YKklkKv~K~les----~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 250 LKLDPDHKLCFP---FYKKLKKVVKSLES----AEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HccCcchhhHHH---HHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccc
Confidence 76 33221111 11111111111100 12223456777777777777654 343 2234455566777
Q ss_pred cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 392 AGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 392 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.|++.+|++...++. ..|| ..++---..+|.-...++.|+.-|+.+ .+.++++..
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A-~e~n~sn~~ 376 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA-LELNESNTR 376 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhcCcccHH
Confidence 888888888887763 4555 667766777788888889999999988 888877755
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=4.5e-05 Score=76.71 Aligned_cols=132 Identities=8% Similarity=0.074 Sum_probs=74.7
Q ss_pred cCCCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcC--------
Q 044988 7 IPANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKT-------- 78 (538)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------- 78 (538)
+..++...| .|..+-..|+...+...|...|+........ +......+...|++..+++.|..+.-..
T Consensus 485 lrld~~~ap---af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 485 LRLDVSLAP---AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 334454444 5666777777666777788888777665422 5566777777777777777776653221
Q ss_pred ----------------------------C---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHH-
Q 044988 79 ----------------------------E---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLS- 126 (538)
Q Consensus 79 ----------------------------~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 126 (538)
. +.|...|..+..+|.+.|++..|+.+|.+... +.|+. +|.....
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A 637 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEA 637 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHH
Confidence 1 12344555666666666666666666665554 22322 2222211
Q ss_pred -HHHccCCcHHHHHHHHHHH
Q 044988 127 -VCARCGLFREGEQVHGRVL 145 (538)
Q Consensus 127 -~~~~~~~~~~a~~~~~~~~ 145 (538)
.-+..|.+.++...++...
T Consensus 638 ~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 1244555666655555544
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0011 Score=62.60 Aligned_cols=128 Identities=5% Similarity=0.081 Sum_probs=73.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQN-MPMKPN-DAVLGSLLLGC 421 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~ 421 (538)
+|...++.-.+..-+..|+.+|.+..+. +..+ .+.++++++.-|| .++.+-|.++|+- +..-+| ..-....++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3445555555566667777777777666 4444 5666666766554 4556667777754 222233 33334555666
Q ss_pred HhcCCHHHHHHHHHHch-hccCCCCc-ccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 422 RIHNNAELASQVAQKLV-AEIDPEQA-AGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~-~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
...++-..|..+|++.. ..+.|+.. ..|. .+++-=..-|+...+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~-r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWD-RMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHH-HHHHHHHhcccHHHHHHHHHHHHH
Confidence 66677777777777764 21233322 2244 455555566777777777666654
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.00055 Score=74.47 Aligned_cols=329 Identities=12% Similarity=0.008 Sum_probs=185.9
Q ss_pred HHccCChhHHHHHHhcCCC----CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCC--C----CCCcc--hHHHHHHHHH
Q 044988 62 YVTSGYLINAHKVFEKTEN----PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKE--T----EPDEY--TYSFLLSVCA 129 (538)
Q Consensus 62 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~~--~~~~li~~~~ 129 (538)
....|++..+...++.++. .+..........+...|+++++..++......- . .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445677777777766641 222233333444566788888888887765421 0 01111 1122233456
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCc----hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC-------CC--chhHHHHHHH
Q 044988 130 RCGLFREGEQVHGRVLASGYCSN----VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA-------RS--VVSWNSLLKG 196 (538)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~-------~~--~~~~~~li~~ 196 (538)
..|+++.|...++.....-...+ ....+.+...+...|+ ++.|...+++... +. ..++..+...
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 77888888888888766311111 1244556667778888 8888887776552 11 1234455566
Q ss_pred HHhcCCHHHHHHHHccCCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 044988 197 YVKRGDIDGAWKIFDEMPH-------R----NVVSWTTMISGCAQNGKSRQALSLFNEMRRA--RVGLD--QVALVAALS 261 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~ 261 (538)
+...|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 7788888888887766431 1 1123444555666778888888888876542 11121 233444555
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhH--HHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSL--NNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 339 (538)
.+...|+.+.|...+..........+....... ....+..+...|+.+.|...+.....+.......
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~----------- 689 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF----------- 689 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh-----------
Confidence 667788888888888777654222111111100 0112244456788888888887765432111000
Q ss_pred cHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 340 QEALLTFLGVLSACSHGGFVDEGRQFFECMNQN---WGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
....+..+..++...|+.++|...++..... .|..++ ..+...+..++.+.|+.++|...+.+..
T Consensus 690 --~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 690 --LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0011122334445555666666666665442 132332 3466677788889999999998888763
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=4.2e-05 Score=79.51 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHccCCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044988 188 VSWNSLLKGYVKRGDIDGAWKIFDEMPH--------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAA 259 (538)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 259 (538)
..|-..+......++.++|++++++... .-.-.|.++++.-..-|.-+...++|+++.+. .-....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 4455555555555555555555555432 11224555555555555566666666666552 1223345566
Q ss_pred HHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---cchHHHHHHHHH
Q 044988 260 LSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN---TVSWTSMITGFA 334 (538)
Q Consensus 260 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~ 334 (538)
...|.+.+..+.|.++++.|.+. +.....+|...+..+.+.++-+.|..++.+..+ |. +......+..-.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-----F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-----FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-----hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 66666666666666666666665 335556666667777777776777777666554 22 222222222222
Q ss_pred hcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC---CCCC-
Q 044988 335 KQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP---MKPN- 410 (538)
Q Consensus 335 ~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~- 410 (538)
+. |+.++++.+|+.....+ +-....|+.++++-.++|+.+.+..+|+++. ..|-
T Consensus 1612 k~--------------------GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1612 KY--------------------GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hc--------------------CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 33 36666667777666542 2346677777777777777777777777763 2222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHH
Q 044988 411 -DAVLGSLLLGCRIHNNAELASQVA 434 (538)
Q Consensus 411 -~~~~~~l~~~~~~~~~~~~A~~~~ 434 (538)
...|...+..-...|+-..++.+=
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHH
Confidence 345555555556666654444333
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=6.5e-06 Score=70.45 Aligned_cols=118 Identities=10% Similarity=0.113 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCC--HHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLG-CRIHNN--AELAS 431 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~~--~~~A~ 431 (538)
++.+++...++...+. -+.|...|..|...|...|++++|...|++.. ..| +...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3566777777776654 13468899999999999999999999999874 445 46677777776 467777 59999
Q ss_pred HHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 432 QVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
+++++. ....|++..++. .++..+.+.|++++|+..++++.+..-
T Consensus 131 ~~l~~a-l~~dP~~~~al~-~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 131 EMIDKA-LALDANEVTALM-LLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHH-HHhCCCChhHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999 999999999888 999999999999999999999987533
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4.6e-06 Score=80.82 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=106.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHhcCCC
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE--NPSTAIWNQMIRGHARSET 98 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~ 98 (538)
..+...+.+.|-...|..++++ ...|..++-+|...|+..+|..+..+.. +|+...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 3444555555666666666653 4455566666666666666655544332 3555556666666555555
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHH
Q 044988 99 PEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLL 178 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~ 178 (538)
+++|+++++....+ +-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++ +..|.+.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek---~q~av~a 541 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK---EQAAVKA 541 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh---hHHHHHH
Confidence 66666665544321 11111111223456666666666555543 3344455555555555555 5555555
Q ss_pred hhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 179 FDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 179 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
|..... | +...||.+-.+|.+.|+-.+|...+.+..+ .+...|...+....+.|.+++|++.+.++..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 554442 2 334555555555555555555555555443 2222344444444555555555555555543
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0011 Score=62.70 Aligned_cols=227 Identities=13% Similarity=0.042 Sum_probs=147.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc------hhH
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL------VSL 294 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~ 294 (538)
.-.+.++..+..+++.|.+-+....+.. -+..-++..-.++...|.+......-....+. |...- ...
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~----gre~rad~klIak~ 300 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV----GRELRADYKLIAKA 300 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH----hHHHHHHHHHHHHH
Confidence 5567777888889999999998887754 44444555666678888777766655555444 22111 111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC--CcchHHHHHHH--HHhc------CCccHHHHHHHHHHHHhcccCcHHHHHH
Q 044988 295 NNALIHMYASCGEIEEAYGVFRKMQRR--NTVSWTSMITG--FAKQ------GYAQEALLTFLGVLSACSHGGFVDEGRQ 364 (538)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~--~~~~------~~~~~a~~~~~~ll~~~~~~~~~~~a~~ 364 (538)
...+..+|.+.++++.+...|.+...+ ++...+.+=.+ -.+. -+++.|.... .-...+.+.|++..|..
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r-~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEER-EKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH-HHHHHHHhccCHHHHHH
Confidence 122344666778899999999886642 21122211100 0000 0111111111 22567788899999999
Q ss_pred HHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 365 FFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 365 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
.|.+++.. .| |...|....-+|.+.|.+..|++=.+... ..|+ ...|..=..++....++++|.+.|++. .+.
T Consensus 380 ~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea-le~ 455 (539)
T KOG0548|consen 380 HYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA-LEL 455 (539)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999876 46 68899999999999999999988776653 3444 344544455566677999999999999 999
Q ss_pred CCCCcccHHHHHHHHHHh
Q 044988 442 DPEQAAGYLALVANVYAA 459 (538)
Q Consensus 442 ~p~~~~~~~~~l~~~~~~ 459 (538)
.|++.. +...+.+++..
T Consensus 456 dp~~~e-~~~~~~rc~~a 472 (539)
T KOG0548|consen 456 DPSNAE-AIDGYRRCVEA 472 (539)
T ss_pred CchhHH-HHHHHHHHHHH
Confidence 999888 44255555443
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=5.4e-06 Score=78.25 Aligned_cols=227 Identities=14% Similarity=0.028 Sum_probs=100.5
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChh
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVG 173 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 173 (538)
.+.|++.+|.-.|+...+.. +-+...|..|...-+..++-..|...+.+.++.. +-|..+...|.-.|...|. -.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~---q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL---QN 370 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh---HH
Confidence 44555555555555555442 2244455555555555555555555555555543 3344555555555555555 55
Q ss_pred HHHHHhhcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC
Q 044988 174 CARLLFDDMPARS-VVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRR-ARVGL 251 (538)
Q Consensus 174 ~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p 251 (538)
.|.++|+...... ...|.. . ..++...-+. ..+.....+....++|-++.. .+..+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~--~------------------a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLV--S------------------AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHHHHhCccchhcc--c------------------cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 5555554432100 000000 0 0000000000 011111222333333333332 23223
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-cchHHH
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN-TVSWTS 328 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~ 328 (538)
|......|--.|--.|++++|.+.|+.+++. .|.+..+||.|...++...+.++|+..|++..+ |+ +.+...
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 3333334443444455555555555555553 455555555555555555555555555555443 32 234444
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHH
Q 044988 329 MITGFAKQGYAQEALLTFLGVLSA 352 (538)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~ll~~ 352 (538)
|.-.|...|.+.+|...|...|..
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHh
Confidence 444555555555555444444443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=3.4e-05 Score=68.83 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
.....+..+...+.+.|++++|...|+++... .|+ ...+..+..++...|+++.|...++.+.+. .|.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~ 103 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNH 103 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCC
Confidence 34455666667777777788887777777653 232 134556666777777788887777777765 3322
Q ss_pred hh---HHHHHHHHHHhC--------CCHHHHHHHHHhcCC
Q 044988 292 VS---LNNALIHMYASC--------GEIEEAYGVFRKMQR 320 (538)
Q Consensus 292 ~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~ 320 (538)
.. .+..+..++... |+++.|.+.|+++.+
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 22 333444555443 667777777777654
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=5.6e-06 Score=66.90 Aligned_cols=106 Identities=10% Similarity=-0.059 Sum_probs=87.6
Q ss_pred HHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 364 QFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 364 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
.++++..+ +.|+. +..+...+...|++++|...|+... ..| +...|..+..++...|++++|...|+++ ..+
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A-l~l 87 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA-LML 87 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-Hhc
Confidence 45555553 35654 5567788889999999999998874 344 5778888888999999999999999999 899
Q ss_pred CCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 442 DPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 442 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.|+++..+. .++.++.+.|++++|+..+++..+.
T Consensus 88 ~p~~~~a~~-~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DASHPEPVY-QTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999888 9999999999999999999998764
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=7.2e-05 Score=66.75 Aligned_cols=189 Identities=11% Similarity=-0.023 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-cc
Q 044988 251 LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL---VSLNNALIHMYASCGEIEEAYGVFRKMQR--RN-TV 324 (538)
Q Consensus 251 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-~~ 324 (538)
.....+..+...+...|+++.|...++.+.+. .|.+ ...+..+..++.+.|++++|...++++.+ |+ ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 34556777778889999999999999999886 3433 24566788999999999999999999875 32 21
Q ss_pred ---hHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH-HHHHHHHHHhhhcCChHHHHH
Q 044988 325 ---SWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI-EHYGCMVDLFSRAGLMDEAFS 400 (538)
Q Consensus 325 ---~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 400 (538)
++..+...+... +.......|+.+.|.+.|+.+.+. .|+. ..+..+..... .....
T Consensus 106 ~~~a~~~~g~~~~~~------------~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~- 165 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQ------------IDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL- 165 (235)
T ss_pred hHHHHHHHHHHHHHh------------cccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-
Confidence 233333333222 011122346788899999998866 4543 23332221111 11110
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCc---ccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 401 LVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQA---AGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 401 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
......+...+.+.|++++|...++++ ....|+.+ ..+. .++.++.+.|++++|..+++.+...
T Consensus 166 ----------~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~a~~-~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ----------AGKELYVARFYLKRGAYVAAINRFETV-VENYPDTPATEEALA-RLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHH-HHHCCCCcchHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011124556688999999999999999 77766653 4567 8899999999999999999888754
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00018 Score=62.43 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=141.7
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhH-HHHHH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTN-LMNLY 163 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 163 (538)
-+.+++..+.+..+++.|++++..-.++. +.+....+.|..+|-...++..|-..++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46777877888899999999998877763 336778888888889999999999999998775 344333321 23445
Q ss_pred HhcCCCCChhHHHHHhhcCCCC-CchhHHHHHHH--HHhcCCHHHHHHHHccCC-CCChHHHHHHHHHHHHcCCHHHHHH
Q 044988 164 LMSGGECGVGCARLLFDDMPAR-SVVSWNSLLKG--YVKRGDIDGAWKIFDEMP-HRNVVSWTTMISGCAQNGKSRQALS 239 (538)
Q Consensus 164 ~~~g~~~~~~~a~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~ 239 (538)
.+.+. +.+|+++...|... +...-..-+.+ .-..+++..+..+.++.+ +.+..+.+.......+.|+++.|++
T Consensus 89 Y~A~i---~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACI---YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcc---cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 56677 88888888888763 32222222222 245788888999999888 4666677777667778899999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchh
Q 044988 240 LFNEMRRA-RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVS 293 (538)
Q Consensus 240 ~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (538)
-|+...+- |..| ...|+..+ ++.+.++.+.|.+...++.+. |+...+.
T Consensus 166 kFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieR----G~r~HPE 214 (459)
T KOG4340|consen 166 KFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIER----GIRQHPE 214 (459)
T ss_pred HHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHh----hhhcCCc
Confidence 99988775 5554 45666555 455678888998888888887 6655544
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=2.1e-05 Score=80.80 Aligned_cols=229 Identities=10% Similarity=0.028 Sum_probs=142.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHHHHH
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSMITG 332 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~ 332 (538)
.+..|+..+...++++.|.++.+...+. .|.....|-.+...+.+.++...+..+ .+.. +...-|+.+-..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 3444444444555555555555544443 444444444444455566665555555 2222 222223333333
Q ss_pred HHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH
Q 044988 333 FAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPND 411 (538)
Q Consensus 333 ~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 411 (538)
|...++...-...+..+..+|.+.|+.+++..+|+++.+- .| |..+.|.+...|... ++++|.+++.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV----- 176 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DKEKAITYLKKAI----- 176 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----
Confidence 4444444444456677788888889999999999999965 45 688999999999999 9999999988753
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH-------H------------HHHHHHHhcCChHHHHHHHHH
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL-------A------------LVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~-------~------------~l~~~~~~~g~~~~A~~~~~~ 472 (538)
..+...+++..+.++|.++ ....|++...+. . -+-..|...++|++++.+++.
T Consensus 177 -------~~~i~~kq~~~~~e~W~k~-~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 177 -------YRFIKKKQYVGIEEIWSKL-VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred -------HHHHhhhcchHHHHHHHHH-HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 2355666777888888887 777777666322 0 122556677889999999999
Q ss_pred HHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHH
Q 044988 473 MIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKT 512 (538)
Q Consensus 473 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (538)
+.+..-. -.| ...+.+..|...|..|+..++.+.+
T Consensus 249 iL~~~~~----n~~-a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 249 ILEHDNK----NNK-AREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred HHhcCCc----chh-hHHHHHHHHHHHccCcchHHHHHHH
Confidence 9874332 112 1222223344446777777766554
No 118
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.0004 Score=64.03 Aligned_cols=222 Identities=12% Similarity=0.065 Sum_probs=122.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC-ChHHHHHHHHHHHHhccCCCCCcchhHHHHHH
Q 044988 222 TTMISGCAQNGKSRQALSLFNEMRRARVGLDQVA-LVAALSACAEIG-DLKLGKWIHSYVEENFSVGREPVLVSLNNALI 299 (538)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (538)
+.+-..+...++.++|+.++.++.+ +.|+..| +..--.++...| +++++...++.+.+. .|.+..+|+...
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npknyqaW~~R~ 113 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----NPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcchHHhHHHH
Confidence 3333444555666777777776665 3444332 333333333444 456666666666664 556656666555
Q ss_pred HHHHhCCCH--HHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC
Q 044988 300 HMYASCGEI--EEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG 374 (538)
Q Consensus 300 ~~~~~~g~~--~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (538)
..+.+.|+. +++..+++++.+. |..+|+.....+...| +++++++.++++++. .
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~--------------------~~~eeL~~~~~~I~~-d 172 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG--------------------GWEDELEYCHQLLEE-D 172 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHHH-C
Confidence 555555542 4556666665543 3334444333333333 555666666666654 1
Q ss_pred CCccHHHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHchhcc
Q 044988 375 IKPRIEHYGCMVDLFSRA---GLM----DEAFSLVQNM-PMKPN-DAVLGSLLLGCRIH----NNAELASQVAQKLVAEI 441 (538)
Q Consensus 375 ~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~ 441 (538)
.-|..+|+....++.+. |+. +++++...++ ...|+ ...|+.+...+... ++..+|.+.+.+. ...
T Consensus 173 -~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~-~~~ 250 (320)
T PLN02789 173 -VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV-LSK 250 (320)
T ss_pred -CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh-hcc
Confidence 22455555555444433 222 3455555333 33343 56677666666552 3345677777777 667
Q ss_pred CCCCcccHHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 044988 442 DPEQAAGYLALVANVYAAAK------------------RWQDVAAVRQKMI 474 (538)
Q Consensus 442 ~p~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 474 (538)
.|.++.+.. .|+++|+... ..++|.++++.+.
T Consensus 251 ~~~s~~al~-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 251 DSNHVFALS-DLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cCCcHHHHH-HHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777666 7888887632 2367888888873
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00021 Score=73.68 Aligned_cols=232 Identities=10% Similarity=0.041 Sum_probs=156.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 186 SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVV-SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
+...|..|+..+...+++++|.++.+...+ |+.. .|-.+...+.+.++.+++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 556778888888888888888888876543 4333 344444456666665555544 222 22
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 339 (538)
.....++.....++..+.. .+.+..++..+..+|.+.|+.++|..+++++.+ .|+...|.+...|... +.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2223333333333344433 344445666899999999999999999999887 4678889999999988 99
Q ss_pred cHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 044988 340 QEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLL 418 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 418 (538)
++|...+...+..+...+++..+.++|.++... .|+ ...+-.+.+.....-.. .--..++--+-
T Consensus 166 ~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~ 230 (906)
T PRK14720 166 EKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhcc------------chhHHHHHHHH
Confidence 999999999999999999999999999999865 453 33333333322222111 12234444555
Q ss_pred HHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHH
Q 044988 419 LGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYA 458 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 458 (538)
..|...++++++..+++.+ .+..|.+..+.. -++.+|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~i-L~~~~~n~~a~~-~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKI-LEHDNKNNKARE-ELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHH-HhcCCcchhhHH-HHHHHHH
Confidence 6677778888888888888 888888877666 6666655
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=2.5e-05 Score=63.14 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=84.9
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCH
Q 044988 351 SACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNA 427 (538)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~ 427 (538)
.++...|++++|...|+..... .| +...|..+..++.+.|++++|...|+... .. .+...+..+..++...|++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3445556888888999998854 55 68899999999999999999999999884 33 4578888999999999999
Q ss_pred HHHHHHHHHchhccCCCCcccHHHHHHHHH
Q 044988 428 ELASQVAQKLVAEIDPEQAAGYLALVANVY 457 (538)
Q Consensus 428 ~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~ 457 (538)
++|...|++. ....|+++..+. ..+.++
T Consensus 109 ~eAi~~~~~A-l~~~p~~~~~~~-~~~~~~ 136 (144)
T PRK15359 109 GLAREAFQTA-IKMSYADASWSE-IRQNAQ 136 (144)
T ss_pred HHHHHHHHHH-HHhCCCChHHHH-HHHHHH
Confidence 9999999999 999999998555 665543
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=1.9e-06 Score=50.32 Aligned_cols=34 Identities=29% Similarity=0.629 Sum_probs=26.8
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDE 118 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 118 (538)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888887877763
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.4e-06 Score=49.90 Aligned_cols=34 Identities=35% Similarity=0.629 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD 252 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (538)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00055 Score=58.72 Aligned_cols=170 Identities=14% Similarity=0.065 Sum_probs=98.5
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC-C
Q 044988 139 QVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR-N 217 (538)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 217 (538)
++.+.+.......+......-...|+..|+ +++|.+...... +......-+..+.+..+++-|...+++|.+- +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~---~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGD---FDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCC---hHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 344444444334444444445556677777 777777776632 2333333344556667777777777777763 3
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchh
Q 044988 218 VVSWTTMISGCAQ----NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVS 293 (538)
Q Consensus 218 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (538)
..|.+.|..++.+ .+...+|.-+|++|.+. ..|+..+.+-...++...+++++|..+++..... .+.++.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d~~dpe 242 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----DAKDPE 242 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----cCCCHH
Confidence 4455656655554 34677788888877543 5677777777777777777787777777777765 333343
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHhcC
Q 044988 294 LNNALIHMYASCG-EIEEAYGVFRKMQ 319 (538)
Q Consensus 294 ~~~~l~~~~~~~g-~~~~a~~~~~~m~ 319 (538)
+...++-.-.-.| +.+...+.+..+.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3333333333333 3333444444444
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=2.9e-05 Score=72.89 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=100.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHN 425 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 425 (538)
.++..+...++++.|..+|+++.+. .|+. ...++..+...++-.+|.+++++.. ..| +...+......+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3455556667899999999999876 4664 4457888888899999999998874 233 5666666677799999
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+++.|+.+.+++ ....|++..+|. .|+.+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~a-v~lsP~~f~~W~-~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKA-VELSPSEFETWY-QLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHH-HHhCchhHHHHH-HHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999 999999999999 99999999999999999999886
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=9.9e-05 Score=71.95 Aligned_cols=214 Identities=12% Similarity=0.131 Sum_probs=137.5
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHH-------------HHHHHHHhc
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLT-------------FLGVLSACS 354 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~-------------~~~ll~~~~ 354 (538)
.|+-...-..+...+.+.|-...|..+|+++ ..|...|..|...|+..+|... |..+.+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLH 468 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhcc
Confidence 4555555567888899999999999999886 4556666677777765555422 222222222
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 044988 355 HGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNM-PMKP-NDAVLGSLLLGCRIHNNAELASQ 432 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~ 432 (538)
...-+++|.++++....+ .-..+.....+.++++++.+.|+.- ...| -..+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 222234444444333221 1122222223456777777777653 2333 35678888888899999999999
Q ss_pred HHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHH
Q 044988 433 VAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKT 512 (538)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (538)
.|... ..+.|++...|. .+..+|.+.|+-.+|...+++..+-+. .+...| ..|.--.-.-++.++++..
T Consensus 541 aF~rc-vtL~Pd~~eaWn-Nls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iW-------ENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 541 AFHRC-VTLEPDNAEAWN-NLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIW-------ENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHH-hhcCCCchhhhh-hhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeee-------echhhhhhhcccHHHHHHH
Confidence 99999 999999999999 999999999999999999999988763 344566 2333333334455555555
Q ss_pred HHHHHHHHHHcCcc
Q 044988 513 LGEITMQAMQEGYK 526 (538)
Q Consensus 513 l~~~~~~m~~~~~~ 526 (538)
..++. .|++.+-.
T Consensus 610 ~~rll-~~~~~~~d 622 (777)
T KOG1128|consen 610 YHRLL-DLRKKYKD 622 (777)
T ss_pred HHHHH-Hhhhhccc
Confidence 54433 34444433
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00075 Score=57.48 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhC
Q 044988 231 NGKSRQALSLFNEMRR---AR-VGLDQVA-LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASC 305 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (538)
..+.+++++++.++.. .| ..|+..+ |-.++-+....|+.+.|..+++.+... +|.+..+-..-.-.+-..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-----fp~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-----FPGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHh
Confidence 4678889999888875 35 6666655 455666777889999999999999987 465555543334456678
Q ss_pred CCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHH
Q 044988 306 GEIEEAYGVFRKMQRRN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHY 382 (538)
Q Consensus 306 g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 382 (538)
|++++|.++++.+.+.| .+++..-+......| +.-+|++-+....+. +..|...|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--------------------K~l~aIk~ln~YL~~--F~~D~EAW 157 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG--------------------KNLEAIKELNEYLDK--FMNDQEAW 157 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC--------------------CcHHHHHHHHHHHHH--hcCcHHHH
Confidence 99999999999998754 344444444444444 333555555555554 36689999
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHchhccCCCCcc
Q 044988 383 GCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRI---HNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
..|...|...|++++|.-.++++. ..|- ...+..+...+.- ..+.+.|.++|.+. .++.|.+..
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a-lkl~~~~~r 226 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA-LKLNPKNLR 226 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhChHhHH
Confidence 999999999999999999999985 4555 4455566655333 33778899999999 999995543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00019 Score=61.44 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNAELASQVA 434 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~ 434 (538)
|++..|...|++.... -++|...|+.+.-+|.+.|++++|..-|.+.. +. .+....+.+...+.-.|+.+.|..++
T Consensus 114 g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 114 GNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred cchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 3555555666665542 24456677777777777777777766665542 22 23455566666666667777777777
Q ss_pred HHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHH
Q 044988 435 QKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQ 471 (538)
Q Consensus 435 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 471 (538)
... ....+.+...-. .|+.+....|++++|..+..
T Consensus 192 l~a-~l~~~ad~~v~~-NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 192 LPA-YLSPAADSRVRQ-NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHH-HhCCCCchHHHH-HHHHHHhhcCChHHHHhhcc
Confidence 666 444454555444 56666666777766665543
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=3e-05 Score=62.34 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 365 FFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 365 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
.++.... ..|+ ......+...+...|++++|.+.++.+. ..| +...|..+...+...|++++|...+++. ...
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~ 80 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA-AAL 80 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 3444443 3553 5567778888899999999999998874 334 5678888888899999999999999999 888
Q ss_pred CCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 442 DPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 442 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.|+++..+. .++.+|...|++++|...+++..+.
T Consensus 81 ~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 DPDDPRPYF-HAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988788 8999999999999999999998874
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00012 Score=74.56 Aligned_cols=124 Identities=16% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHH
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCR 422 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~ 422 (538)
+..|..+....|.+++|+.+++.+.+. .|+ ......+..++.+.+++++|+..+++.. ..|+ ......+..++.
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 333444444555666666777766643 565 4456666677777777777777776653 3455 344445555667
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.|++++|..+|+++ ....|+++.++. .++.++.+.|+.++|...|++..
T Consensus 166 ~~g~~~~A~~~y~~~-~~~~p~~~~~~~-~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 166 EIGQSEQADACFERL-SRQHPEFENGYV-GWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HhcchHHHHHHHHHH-HhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777 556666666666 77777777777777777776664
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.2e-06 Score=48.43 Aligned_cols=33 Identities=30% Similarity=0.630 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGL 251 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 251 (538)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 131
>PLN02789 farnesyltranstransferase
Probab=98.15 E-value=0.00057 Score=63.08 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=54.3
Q ss_pred HHHhcCCCchHHHHHHHHhHhCCCCCCc-chHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 91 RGHARSETPEKSVYLYKQMIDKETEPDE-YTYSFLLSVCARCG-LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
..+...++.++|+.++.++++. .|+. .+|+.--.++...| ++++++..++++.+.. +.+..+|+....++.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3344455555666666655543 2322 23443333444444 3455555555555543 3333344444333333333
Q ss_pred CCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 169 ECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 169 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
. ..+++...++++.+ .|..+|+...-.+...|+++++++.++++.
T Consensus 122 ~-~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 122 D-AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred h-hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0 01333444443332 233444444444555555555555555544
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=7.1e-05 Score=59.55 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
....-.+...+...|++++|.++|+-+. ..| +..-|-.|..++...|++++|+..|..+ ..+.|+++.++. .++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A-~~L~~ddp~~~~-~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA-AQIKIDAPQAPW-AAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCCCchHHH-HHHHH
Confidence 4455566667778999999999999874 344 4677888888999999999999999999 999999999999 99999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
+...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.6e-06 Score=48.73 Aligned_cols=33 Identities=21% Similarity=0.586 Sum_probs=22.7
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHhHhCCCCC
Q 044988 84 AIWNQMIRGHARSETPEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 84 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 116 (538)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777666665
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.0026 Score=59.67 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=134.2
Q ss_pred hhHHHHHhhcCCC------CCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044988 172 VGCARLLFDDMPA------RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGCAQNGKSRQALSLFNE 243 (538)
Q Consensus 172 ~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 243 (538)
+.++...-++++. ++...+...+.+......-..+-.++.+..+ ....-|..-+ .+...|++++|+..++.
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~ 331 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRAL-QTYLAGQYDEALKLLQP 331 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHH-HHHHhcccchHHHHHHH
Confidence 4455555555553 2444555555544333333333333332222 2222344444 44567999999999999
Q ss_pred HHHCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--
Q 044988 244 MRRARVGLDQVALV-AALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-- 320 (538)
Q Consensus 244 m~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 320 (538)
+... .||...|. .....+.+.++.++|.+.++.+... .|......-.+..+|.+.|++.+|..++++...
T Consensus 332 L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 332 LIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 8874 56555554 5556678999999999999999987 666677777899999999999999999998775
Q ss_pred -CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 321 -RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 321 -~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.|+..|..|..+|...|+..++. .....++.-.|+++.|...+....+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~---~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEAL---LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 47889999999999999888775 33355667788888888888888775
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00023 Score=60.98 Aligned_cols=160 Identities=17% Similarity=0.087 Sum_probs=132.4
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCC-C--CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHH
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTE-N--PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSV 127 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 127 (538)
|..+ ..+-..+...|+-+....+..... . .+....+..+....+.|++..|+..|++..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 3444 666777888898888888877754 2 344456668999999999999999999998754 6788999999999
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHH
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDID 204 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 204 (538)
|.+.|+++.|..-|.+..+.- +-+....+.+...|.-.|+ .+.|..++..... .|...-..+.......|+++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 999999999999999999874 5567788999999999999 9999999987653 37778888888999999999
Q ss_pred HHHHHHccCCCC
Q 044988 205 GAWKIFDEMPHR 216 (538)
Q Consensus 205 ~A~~~~~~m~~~ 216 (538)
.|..+-..-..+
T Consensus 220 ~A~~i~~~e~~~ 231 (257)
T COG5010 220 EAEDIAVQELLS 231 (257)
T ss_pred HHHhhccccccc
Confidence 999998775543
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0034 Score=54.08 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhh----cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSR----AGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELA 430 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 430 (538)
.+.+.|.+.++.|.+- -+..+.+.|..++.+ .+.+.+|.-+|++|. ..|+..+.+....++...|++++|
T Consensus 151 ~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHH
Confidence 3667777777777642 244566666665543 345777888888884 457777888887788888888888
Q ss_pred HHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 431 SQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 431 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+++.+ ..-.++++.+..+++..+.....+.+-..+.+.+++.
T Consensus 227 e~lL~ea-L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 227 ESLLEEA-LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHH-HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888 7777777776663443333333333444455566554
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00011 Score=59.66 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHH
Q 044988 341 EALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPND----AVL 414 (538)
Q Consensus 341 ~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~ 414 (538)
+|-..|..++..+. .++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..||. ...
T Consensus 10 ~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 10 QASALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 33356666666664 7788999999999988742221 13445557788899999999999999885 22443 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHH
Q 044988 415 GSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 473 (538)
..+...+...|++++|+..++.. . ..+-.+..+. +++++|.+.|++++|+..|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~-~-~~~~~~~~~~-~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQI-P-DEAFKALAAE-LLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-c-CcchHHHHHH-HHHHHHHHCCCHHHHHHHHHHh
Confidence 45667789999999999999875 2 2333344355 9999999999999999999863
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00092 Score=62.55 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=94.6
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 044988 355 HGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELAS 431 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~ 431 (538)
..|.++.|+..+..+... .| |+..+....+.+.+.++..+|.+.++++. ..|+ ...+-.+..++.+.|++++|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 446888889999998865 56 56667777889999999999999999885 5677 566677788899999999999
Q ss_pred HHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 432 QVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.+++.. ..-.|+++..|. .|+.+|...|+..+|.....+..
T Consensus 395 ~~L~~~-~~~~p~dp~~w~-~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRY-LFNDPEDPNGWD-LLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHH-hhcCCCCchHHH-HHHHHHHHhCchHHHHHHHHHHH
Confidence 999999 888999999888 99999888887777776665554
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.017 Score=58.45 Aligned_cols=214 Identities=12% Similarity=0.057 Sum_probs=131.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHH
Q 044988 29 IRNTTKTLFQIHSQIIINGFSQKNYILAKLLAF--YVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSV 103 (538)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 103 (538)
..+++..|..-...+.+.- |+.. |..++.+ ..+.|+.++|..+++... ..|..|...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 3466777888777776652 3332 3333443 357889999998887665 346678888888899999999999
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC--CC-----ChhHHH
Q 044988 104 YLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG--EC-----GVGCAR 176 (538)
Q Consensus 104 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~-----~~~~a~ 176 (538)
.+|++.... .|+......+..+|++.+++.+-.++--++-+. ++.+.+.+=++++.....-. .. -+.-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998864 577778888888899888877666655555543 45555555555555544332 00 012344
Q ss_pred HHhhcCCCCC-c----hhHHHHHHHHHhcCCHHHHHHHHcc-----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 177 LLFDDMPARS-V----VSWNSLLKGYVKRGDIDGAWKIFDE-----MPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 177 ~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
+.++.+.+.+ . .-...-...+...|++++|++++.. ....+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444332 1 1111122334556667777777632 1223333444555666667777777777777766
Q ss_pred CC
Q 044988 247 AR 248 (538)
Q Consensus 247 ~g 248 (538)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00011 Score=69.07 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=60.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCC
Q 044988 90 IRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGE 169 (538)
Q Consensus 90 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 169 (538)
+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++++.++.. +.+..........+.+.++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~- 249 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK- 249 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC-
Confidence 333444455555555555555432 22 23334444444455555555555555432 3344444445555555555
Q ss_pred CChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 170 CGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 170 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
.+.|..+.++..+ | +..+|..|..+|.+.|+++.|+..++.++
T Consensus 250 --~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 --YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555543 2 33456666666666666666666666655
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.00071 Score=61.91 Aligned_cols=156 Identities=14% Similarity=0.192 Sum_probs=102.3
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-CcHHHHHHHHHHhhhhcCCCcc----HHH
Q 044988 307 EIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHG-GFVDEGRQFFECMNQNWGIKPR----IEH 381 (538)
Q Consensus 307 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~ 381 (538)
++++|...+++ .+..|...|++..|-..+..+...|... |+++.|.+.|++..+.+..... ..+
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 66666666555 4677888899999888899999999888 9999999999987765422222 446
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH--
Q 044988 382 YGCMVDLFSRAGLMDEAFSLVQNMP---M-----KPNDA-VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL-- 450 (538)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~-- 450 (538)
+..+...+.+.|++++|.++|+++. . +.+.. .+-..+-++...||+-.|.+.+++. ....|....+-.
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~-~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY-CSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-GTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCCCcHHHH
Confidence 6778889999999999999999863 1 11221 2333444677789999999999999 777775544322
Q ss_pred --HHHHHHHHh--cCChHHHHHHHHHHH
Q 044988 451 --ALVANVYAA--AKRWQDVAAVRQKMI 474 (538)
Q Consensus 451 --~~l~~~~~~--~g~~~~A~~~~~~m~ 474 (538)
..|+.++-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 234444432 234555555555543
No 142
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.94 E-value=0.00029 Score=60.34 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=101.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchH
Q 044988 25 SLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEK 101 (538)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 101 (538)
..|...|+++.+....+.+. .|. .-+...++.+++...++... +.|...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44677788777644432211 111 01223556666666666544 3567788899999999999999
Q ss_pred HHHHHHHhHhCCCCCCcchHHHHHHHH-HccCC--cHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHH
Q 044988 102 SVYLYKQMIDKETEPDEYTYSFLLSVC-ARCGL--FREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLL 178 (538)
Q Consensus 102 a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~ 178 (538)
|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|+ +++|...
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~---~~~Ai~~ 166 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQAD---YAQAIEL 166 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCC---HHHHHHH
Confidence 999999888753 33556777777654 56676 489999999999876 5577888889999999999 9999999
Q ss_pred hhcCCC
Q 044988 179 FDDMPA 184 (538)
Q Consensus 179 ~~~~~~ 184 (538)
++++.+
T Consensus 167 ~~~aL~ 172 (198)
T PRK10370 167 WQKVLD 172 (198)
T ss_pred HHHHHh
Confidence 988765
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0011 Score=67.68 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-chHHHHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTEN--P-STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDE-YTYSFLLSV 127 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~ 127 (538)
+..+-.|..+..+.|+.++|..+++...+ | +...+..+..++.+.+++++|+..+++.... .|+. .....+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 44444444455555555555555554431 2 2233444445555555555555555555543 2322 233344444
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
+.+.|++++|..+|+++...+ +.+..++..+..++...|+ .++|...|++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~ 215 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGA---LWRARDVLQAGL 215 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 555555555555555555421 2334455555555555555 555555555443
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=1.9e-05 Score=44.42 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCC
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKE 113 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 113 (538)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777777777777777777777777665
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.2e-05 Score=44.16 Aligned_cols=31 Identities=35% Similarity=0.703 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (538)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887664
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0034 Score=53.66 Aligned_cols=191 Identities=13% Similarity=0.044 Sum_probs=134.5
Q ss_pred cCChHHHHHHHHHHHHhccCC-CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHH
Q 044988 266 IGDLKLGKWIHSYVEENFSVG-REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALL 344 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 344 (538)
..+.++..+++..+......+ -.+.-..++..+.-+...+|+.+.|...++.+..+-+.++....
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~-------------- 90 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK-------------- 90 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH--------------
Confidence 345667777777776654433 22333345555666667789999999999887653222222111
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGC 421 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 421 (538)
....+ +-..|.+++|.++++.+.+. .| |..++--=+.+.-..|+.-+|++-+.+.. +..|...|.-+...|
T Consensus 91 lkam~---lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 91 LKAML---LEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHH---HHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 00011 11235788889999999876 45 67777766767777888888887776653 557899999999999
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCC
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK---RWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 478 (538)
...|++++|.-.++++ .-+.|-++..|. .+++.+.-.| +.+-|.++|.+..+...
T Consensus 165 ~~~~~f~kA~fClEE~-ll~~P~n~l~f~-rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEEL-LLIQPFNPLYFQ-RLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HhHhHHHHHHHHHHHH-HHcCCCcHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999 889999999666 8888887666 46678888888776433
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0015 Score=59.80 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCc-chhHHHHHHHHHHhC-CCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHH
Q 044988 268 DLKLGKWIHSYVEENFSVGREPV-LVSLNNALIHMYASC-GEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLT 345 (538)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 345 (538)
+++.|...+....+.....|.+. -...+..+...|... |+++.|.+.|++. +..|...+....+..+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A-----------~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKA-----------AELYEQEGSPHSAAEC 157 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHH-----------HHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHCCChhhHHHH
Confidence 55555555554444322222221 123344555666666 7777777777664 5566667766666688
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcC----CCccHH-HHHHHHHHhhhcCChHHHHHHHHhCC-CCC----C--HHH
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWG----IKPRIE-HYGCMVDLFSRAGLMDEAFSLVQNMP-MKP----N--DAV 413 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~--~~~ 413 (538)
+..+...+...|++++|.++|+++....- ..++.. .+-..+-++...|+...|.+.+++.. ..| + ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 88888889999999999999999876421 122222 33344556777899999999998864 222 2 456
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHchhccCC
Q 044988 414 LGSLLLGCRI--HNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 414 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~p 443 (538)
...|+.++-. ...++.++.-|+.+ ..+.|
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~-~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI-SRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS-S---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc-CccHH
Confidence 6677777654 23567777777776 44444
No 148
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.048 Score=54.19 Aligned_cols=340 Identities=10% Similarity=0.118 Sum_probs=183.9
Q ss_pred HhcCCCchHHHHHHHHh--------HhCCCCCCcchHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHH
Q 044988 93 HARSETPEKSVYLYKQM--------IDKETEPDEYTYSF-----LLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNL 159 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m--------~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (538)
+.+..++++-..+.... ..-|++.+..-|.. +|..+...+.+..|.++-..+...-... ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 34444555444444333 23466666555544 5667778888999988877664322112 5778888
Q ss_pred HHHHHhcCCCCChhHHHHHhhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC--------ChHHHHHHHHHHH
Q 044988 160 MNLYLMSGGECGVGCARLLFDDMPA--RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR--------NVVSWTTMISGCA 229 (538)
Q Consensus 160 ~~~~~~~g~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~ 229 (538)
...+.+..+....+.+..+-+++.. .+..+|..+.+-.-..|+.+-|..+++.=+.. +..-+...+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 8888877653334555555566655 46678888888888999999999998875431 2223555566667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHH
Q 044988 230 QNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIE 309 (538)
Q Consensus 230 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (538)
..|+.+-...++-++.+. .+...|...+ .+...|..+|..+.+.. +.. .+-+.|-...+..
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~---~~~-------~l~d~y~q~dn~~ 618 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQ---DRA-------TLYDFYNQDDNHQ 618 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhh---chh-------hhhhhhhcccchh
Confidence 778877777777766542 1112221111 22334444444444320 110 1112222222222
Q ss_pred HHHHHHHhc------CCCCcchHHHHHHHHHhcCC---ccHHH-----------------------HHHHHHHHHhcccC
Q 044988 310 EAYGVFRKM------QRRNTVSWTSMITGFAKQGY---AQEAL-----------------------LTFLGVLSACSHGG 357 (538)
Q Consensus 310 ~a~~~~~~m------~~~~~~~~~~li~~~~~~~~---~~~a~-----------------------~~~~~ll~~~~~~~ 357 (538)
.+-.+.-+- .++-.........++.+... ..+|. .+.+.-+.-+...|
T Consensus 619 ~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g 698 (829)
T KOG2280|consen 619 ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIG 698 (829)
T ss_pred hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHcc
Confidence 111111000 00001111112222222221 01111 12223334444556
Q ss_pred cHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 358 FVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
+..+|.++-.+.+ -||-..|..=+.+++..+++++-+++-+..+ .+.-|.-+..+|.+.|+.++|.+++.+.
T Consensus 699 ~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 699 QNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred chHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 6666666655543 4677777777777777777777777666654 2455666777777777777777777776
Q ss_pred hhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 438 VAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 438 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
.++. -...+|.+.|++.+|.++-
T Consensus 771 -~~l~---------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 771 -GGLQ---------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -CChH---------HHHHHHHHhccHHHHHHHH
Confidence 2211 2235677777777777653
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00028 Score=52.28 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=67.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 382 YGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
+..+...+...|++++|...++++. ..|+ ...+..+...+...+++++|.+.++.. ....|.+...+. .++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-LELDPDNAKAYY-NLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcchhHHH-HHHHHHHH
Confidence 4556666777788888888887663 2333 356666777777788888888888887 777777776566 77788888
Q ss_pred cCChHHHHHHHHHHHh
Q 044988 460 AKRWQDVAAVRQKMIK 475 (538)
Q Consensus 460 ~g~~~~A~~~~~~m~~ 475 (538)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888877664
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00036 Score=51.46 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHHccC--------CcHHHHHHHHHHHHhCCCCchhHHh
Q 044988 87 NQMIRGHARSETPEKSVYLYKQMIDKET-EPDEYTYSFLLSVCARCG--------LFREGEQVHGRVLASGYCSNVFIRT 157 (538)
Q Consensus 87 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (538)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877653 2345678899999999999999999
Q ss_pred HHHHHHHh
Q 044988 158 NLMNLYLM 165 (538)
Q Consensus 158 ~l~~~~~~ 165 (538)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888754
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0015 Score=53.07 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc----chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc--hhHHhHH
Q 044988 86 WNQMIRGHARSETPEKSVYLYKQMIDKETEPDE----YTYSFLLSVCARCGLFREGEQVHGRVLASGYCSN--VFIRTNL 159 (538)
Q Consensus 86 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 159 (538)
|..++..+ ..++...+...++.+.+.. |+. ...-.+...+...|++++|...|+........|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44444444 3666666666677666542 222 1222334556666777777777777766542221 1223334
Q ss_pred HHHHHhcCCCCChhHHHHHhhc
Q 044988 160 MNLYLMSGGECGVGCARLLFDD 181 (538)
Q Consensus 160 ~~~~~~~g~~~~~~~a~~~~~~ 181 (538)
...+...|+ +++|+..++.
T Consensus 92 A~~~~~~~~---~d~Al~~L~~ 110 (145)
T PF09976_consen 92 ARILLQQGQ---YDEALATLQQ 110 (145)
T ss_pred HHHHHHcCC---HHHHHHHHHh
Confidence 444444444 4444444443
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00044 Score=65.48 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC-C-----CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcch
Q 044988 47 GFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN-P-----STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYT 120 (538)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 120 (538)
+.+.+.......++......+++++..++-+... | -..+.+++++.|.+.|..+.++.++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445566667777777777777777777665552 1 223556888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 044988 121 YSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMS 166 (538)
Q Consensus 121 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (538)
++.||..+.+.|++..|.++...|...+...+..++.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666666665555555554
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00049 Score=53.68 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC---cccHHHH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ---AAGYLAL 452 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~ 452 (538)
++..++..+.+.|++++|.+.|+.+. ..|+ ...+..+...+.+.|+++.|...++.+ ....|++ +..+. .
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~-~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV-VKKYPKSPKAPDALL-K 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH-HHHCCCCCcccHHHH-H
Confidence 34455555666666666666666553 2232 234444555666666666666666666 5555553 22244 5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 044988 453 VANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 453 l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666666654
No 154
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.66 E-value=0.0017 Score=52.02 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
.....+...+...|++++|...|+.....+ +.+...+..+...+...|+++.|...++...+. .|.+...+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----DPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCChHHHHHH
Confidence 334455566666777777777777766543 234555566666666777777777777766664 45555555566
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC
Q 044988 299 IHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
...|...|++++|...|++..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777776654
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00017 Score=49.82 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 044988 410 NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK-RWQDVAAVRQKMIK 475 (538)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 475 (538)
++.+|..+...+...|++++|+..|+++ ....|+++..+. .++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~~p~~~~~~~-~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA-IELDPNNAEAYY-NLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHSTTHHHHHH-HHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHH-HHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4678888889999999999999999999 999999999888 9999999999 79999999988765
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=5.3e-05 Score=54.83 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPND-AVLGSLLLGCRIHNNAELASQVAQ 435 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~ 435 (538)
|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|..+++.....|.. ...-.+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5556666666665554111112333444555555555555555555553222222 222223344555555555555554
Q ss_pred H
Q 044988 436 K 436 (538)
Q Consensus 436 ~ 436 (538)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.048 Score=50.36 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=83.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHN 425 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 425 (538)
....+.-|...|....|.++-.+. . -|+..-|..-+.+|+..++|++-.++-.. +-.+..|..++.+|.+.|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 334455556667777777775554 3 48888999999999999999988886654 234588899999999999
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+..+|..+..++ |+ . --+..|.+.|+|.+|.+.--+..
T Consensus 252 ~~~eA~~yI~k~-----~~-----~-~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 252 NKKEASKYIPKI-----PD-----E-ERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CHHHHHHHHHhC-----Ch-----H-HHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999998886 32 2 44478999999999988754443
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.61 E-value=0.0012 Score=52.60 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=49.5
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 339 (538)
+...|++++|..+|+.+... .|.+...|..|..++-..|++++|...|..... .|+.++-.+..++...|+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34555666666666555554 555555555666666666666666666665432 3455555566666666655
Q ss_pred cHHHHHHHHHHHHh
Q 044988 340 QEALLTFLGVLSAC 353 (538)
Q Consensus 340 ~~a~~~~~~ll~~~ 353 (538)
+.|...|...+.-|
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555555
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00021 Score=48.67 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 417 LLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
+...+...|++++|.+.|+++ .+..|+++..+. .++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~-l~~~P~~~~a~~-~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA-LKQDPDNPEAWY-LLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH-HCCSTTHHHHHH-HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445678889999999999999 888899888788 8999999999999999999888753
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0026 Score=53.36 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|+++.|...+....+. .|.+...+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 110 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHH
Confidence 3556666667777777777777777765433222 345666666677777777777777777765 455555555
Q ss_pred HHHHHHHhCCC--------------HHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 044988 297 ALIHMYASCGE--------------IEEAYGVFRKMQRRNTVSWTSMITGFAKQG 337 (538)
Q Consensus 297 ~l~~~~~~~g~--------------~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 337 (538)
.+...|...|+ +++|.+++++....++..|..++.-+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcC
Confidence 66666666665 355555665555544444544444444444
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.065 Score=50.13 Aligned_cols=429 Identities=11% Similarity=0.068 Sum_probs=207.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHHH--hcCC
Q 044988 27 LQIRNTTKTLFQIHSQIIINGFSQ-K----NYILAKLLAFYVTSGYLINAHKVFEKTEN--PSTAIWNQMIRGH--ARSE 97 (538)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~--~~~~ 97 (538)
+.+.+++.++..+|..+.+..-.. . ...-+.++++|... +.+..........+ | ...|-.+..++ -+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 456789999999999998764221 1 22345777887643 34444333333332 3 33455554443 4788
Q ss_pred CchHHHHHHHHhHhC--CCCCC---c---------chHHHHHHHHHccCCcHHHHHHHHHHHHhCCC----CchhHHhHH
Q 044988 98 TPEKSVYLYKQMIDK--ETEPD---E---------YTYSFLLSVCARCGLFREGEQVHGRVLASGYC----SNVFIRTNL 159 (538)
Q Consensus 98 ~~~~a~~~~~~m~~~--~~~p~---~---------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l 159 (538)
.+.+|++.+..-.+. +..|. . .-=+..+..+...|++.+++.+++++...=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 999999988877654 32221 1 11234566788999999999999998876444 778888887
Q ss_pred HHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHc--CCHHHH
Q 044988 160 MNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQN--GKSRQA 237 (538)
Q Consensus 160 ~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--~~~~~a 237 (538)
+-++.++-- ++.- +.+...=..-|--++-.|.+.=+.-++... .+. .|......+++....-. .+..--
T Consensus 174 vlmlsrSYf---LEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y-~k~-~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 174 VLMLSRSYF---LELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPY-EKF-IPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHhHHHH---HHHH----HhcccccChHHHHHHHHHHHHHHHHhhchH-Hhh-CcHHHHHHHHHHHHHhCCHhhccHH
Confidence 777765542 2211 111111112244444444332111111000 000 01112222222222111 111222
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 238 LSLFNEMRRARVGLDQVAL-VAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 238 ~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
+++++...+.-+.|+.... ..++....+ +.+++..+-+.+.......-...-+..+..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2333333333344432211 111112211 2333322222222110000011122333444444445555555554444
Q ss_pred hcC--CC---------------------CcchHHHHHHH---HHhcCCccHHH-HH----HHHHHHHhcccCcHHHHHHH
Q 044988 317 KMQ--RR---------------------NTVSWTSMITG---FAKQGYAQEAL-LT----FLGVLSACSHGGFVDEGRQF 365 (538)
Q Consensus 317 ~m~--~~---------------------~~~~~~~li~~---~~~~~~~~~a~-~~----~~~ll~~~~~~~~~~~a~~~ 365 (538)
-+. +| |...++.+-.- +......+.-. .. ....=+-+...+.-++|..+
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 322 12 22222222111 10000000000 11 11111122223447788888
Q ss_pred HHHhhhhcCCCc-cHHHHHHHH----HHhhhcC---ChHHH---HHHHHhCCCC----CCHHHHHHHHHH--HHhcCCHH
Q 044988 366 FECMNQNWGIKP-RIEHYGCMV----DLFSRAG---LMDEA---FSLVQNMPMK----PNDAVLGSLLLG--CRIHNNAE 428 (538)
Q Consensus 366 ~~~~~~~~~~~p-~~~~~~~l~----~~~~~~g---~~~~A---~~~~~~~~~~----p~~~~~~~l~~~--~~~~~~~~ 428 (538)
++.+.+- .| |..+-|... .+|..+= .+.+- ...+++.... .+...-|.|.+| +..+|++.
T Consensus 403 Lk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 403 LKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 8887743 44 443333322 2332221 11211 2222333322 345566777777 67889999
Q ss_pred HHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 429 LASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 429 ~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
++.-.-.-+ .++.| ++.+|. +++-++....++++|..++.++.
T Consensus 480 kc~~ys~WL-~~iaP-S~~~~R-LlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 480 KCYLYSSWL-TKIAP-SPQAYR-LLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHH-HHhCC-cHHHHH-HHHHHHHHHhhHHHHHHHHHhCC
Confidence 998888887 88899 566599 99999999999999999998865
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0011 Score=51.69 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=78.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLL 419 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 419 (538)
+......+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.|+.+. ..|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455566677899999999999987621111 14567779999999999999999999874 3344 456777788
Q ss_pred HHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 420 GCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
++.+.|+.++|...++++ ....|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~-~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV-IKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHH-HHHCcCChh
Confidence 899999999999999999 888888766
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.06 Score=53.00 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=36.2
Q ss_pred hcCChHHHHHHHHhCC------CC----CCHHHHHHHHHH--HHhcCCHHHHHHHHHHch--hccCCCCcccHHHHHHHH
Q 044988 391 RAGLMDEAFSLVQNMP------MK----PNDAVLGSLLLG--CRIHNNAELASQVAQKLV--AEIDPEQAAGYLALVANV 456 (538)
Q Consensus 391 ~~g~~~~A~~~~~~~~------~~----p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~--~~~~p~~~~~~~~~l~~~ 456 (538)
+.|..++|..+++... +. ..+..|..+|.+ ....|..+.|++.--.+. .++-|+... |. +|+-+
T Consensus 989 ~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~ei-yS-llALa 1066 (1189)
T KOG2041|consen 989 KHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEI-YS-LLALA 1066 (1189)
T ss_pred hcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHH-HH-HHHHH
Confidence 3567777777666542 11 223455555554 566788888877655554 445555444 55 55433
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0048 Score=54.55 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=85.1
Q ss_pred Cc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHchhccCCCCcccH
Q 044988 376 KP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIH-N--NAELASQVAQKLVAEIDPEQAAGY 449 (538)
Q Consensus 376 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~-~--~~~~A~~~~~~~~~~~~p~~~~~~ 449 (538)
.| |...|-.|...|.+.|+.+.|..-|.+.. . .+|...+..+..++... | ...++..+++++ ...+|++..+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a-l~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA-LALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-HhcCCccHHHH
Confidence 45 78999999999999999999999998874 3 35566777777664322 2 457899999999 99999999977
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 450 LALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 450 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
. +|+..+...|++.+|...|+.|.+..-
T Consensus 231 ~-lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 S-LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred H-HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 7 999999999999999999999998644
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00038 Score=50.29 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHH
Q 044988 392 AGLMDEAFSLVQNMP-MKP---NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVA 467 (538)
Q Consensus 392 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 467 (538)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+..|.+..... .++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~~~~~~~~~-l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK--LKLDPSNPDIHY-LLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHHHCHHHHHH-HHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCCCCCHHHHH-HHHHHHHHhCCHHHHH
Confidence 588999999999884 234 455666688999999999999999988 455566655466 7799999999999999
Q ss_pred HHHHH
Q 044988 468 AVRQK 472 (538)
Q Consensus 468 ~~~~~ 472 (538)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99986
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.00092 Score=58.62 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=83.7
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 044988 353 CSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~ 429 (538)
+.+.+++++|+..|.+.++ +.| |.+-|..-..+|.+.|.++.|++-.+... +.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456789999999999885 477 57777788999999999999998888764 5565 5799999999999999999
Q ss_pred HHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 430 ASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
|++.|++. .++.|++.+ |-+.|-.+=-+
T Consensus 168 A~~aykKa-LeldP~Ne~-~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKA-LELDPDNES-YKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhh-hccCCCcHH-HHHHHHHHHHH
Confidence 99999999 999999998 65466444333
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0018 Score=61.27 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 044988 351 SACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNA 427 (538)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 427 (538)
..+...|+++.|...|.+..+. .| +...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4455678999999999999865 55 57788899999999999999999999884 445 467888888899999999
Q ss_pred HHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 428 ELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 428 ~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
++|+..|+++ ..+.|++..... .+..+
T Consensus 87 ~eA~~~~~~a-l~l~P~~~~~~~-~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKG-ASLAPGDSRFTK-LIKEC 113 (356)
T ss_pred HHHHHHHHHH-HHhCCCCHHHHH-HHHHH
Confidence 9999999999 999999998555 55444
No 168
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.46 E-value=0.097 Score=48.92 Aligned_cols=130 Identities=14% Similarity=0.213 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcC-CCccHHHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCHHHH-HHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWG-IKPRIEHYGCMVDLFSRAGLMDEAFSLVQN-MPMKPNDAVL-GSLLLG 420 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-~~l~~~ 420 (538)
.+|...+++-.+..-++.|+.+|-++.+. + +.+++.++++++.-++ .|+...|.++|+- |..-||...| +..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44555666666777788888888888777 5 5678888888888555 5777888888864 3344554433 456666
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCC-cccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQ-AAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
+..-++-+.|..+|+.....+..+. ...|. .+++--..-|+...+..+=++|...
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~-kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYD-KMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHH-HHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7778888888888886642222221 22355 6667677788888888888887753
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0029 Score=57.64 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 293 SLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.+|..++...-+.+..+.|+.+|.+..+....+|...+.. + .+ -+...++.+.|..+|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~-A--------------~~-E~~~~~d~~~A~~Ife~glk~ 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY-A--------------LM-EYYCNKDPKRARKIFERGLKK 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH-H--------------HH-HHHTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH-H--------------HH-HHHhCCCHHHHHHHHHHHHHH
Confidence 3577788888888889999999999887555555443321 1 01 122235777899999999987
Q ss_pred cCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 373 WGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPND----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 373 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+ ..+...|...++.+.+.|+.+.|..+|++.. .-|.. ..|...+..-.+.|+.+.+.++.+++ .+..|++..
T Consensus 66 f--~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~-~~~~~~~~~ 142 (280)
T PF05843_consen 66 F--PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA-EELFPEDNS 142 (280)
T ss_dssp H--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH-HHHTTTS-H
T ss_pred C--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhhhhH
Confidence 5 4567788899999999999999999999875 22333 59999999999999999999999999 888888665
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0019 Score=54.27 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALV 453 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l 453 (538)
...+..+...+...|++++|...|++.. ..|+ ...+..+...+.+.|++++|...++++ ....|++...+. .+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-LELNPKQPSALN-NI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHH-HH
Confidence 5567888888999999999999998774 2232 357778888899999999999999999 888999888777 88
Q ss_pred HHHHHhcCC--------------hHHHHHHHHHHHh
Q 044988 454 ANVYAAAKR--------------WQDVAAVRQKMIK 475 (538)
Q Consensus 454 ~~~~~~~g~--------------~~~A~~~~~~m~~ 475 (538)
+.+|...|+ +++|.+++++...
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 888888776 4556666655554
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0012 Score=62.43 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=78.4
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCCh
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRW 463 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 463 (538)
...+...|++++|+++|+++. ..| +...|..+..++...|++++|+..++++ ..+.|++...|. .++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l~P~~~~a~~-~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA-IELDPSLAKAYL-RKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCCHHHHH-HHHHHHHHhCCH
Confidence 455667899999999999884 444 4677788888899999999999999999 999999999888 999999999999
Q ss_pred HHHHHHHHHHHhC
Q 044988 464 QDVAAVRQKMIKM 476 (538)
Q Consensus 464 ~~A~~~~~~m~~~ 476 (538)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0073 Score=50.47 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGL--DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+. .|.....+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~~~ 110 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHH
Confidence 345666666667777777777777776542222 1235666666777777777777777777665 444445555
Q ss_pred HHHHHHH-------hCCCHHHHH-------HHHHhcCCCCcchHHHHHHHHHhcC
Q 044988 297 ALIHMYA-------SCGEIEEAY-------GVFRKMQRRNTVSWTSMITGFAKQG 337 (538)
Q Consensus 297 ~l~~~~~-------~~g~~~~a~-------~~~~~m~~~~~~~~~~li~~~~~~~ 337 (538)
.+...+. ..|+++.|. .++++....++..+......+...|
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~ 165 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITG 165 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 5665665 666666444 4444444444444433333333333
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0082 Score=46.20 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=76.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHM 301 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (538)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+..... +......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHH
Confidence 44567778999999999999999887665 345666777788899999999999988876211111 33333345567
Q ss_pred HHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 044988 302 YASCGEIEEAYGVFRKMQRRNTVSWTSMITGFA 334 (538)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 334 (538)
+...|+.++|.+.+-...-++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999998887655555445555555443
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0028 Score=46.61 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
|..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|...++...+. .+.+...+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcchhHHHHHHH
Confidence 4455566666777777777777766532 222345555666666667777777777766664 3444455566677
Q ss_pred HHHhCCCHHHHHHHHHhcC
Q 044988 301 MYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~ 319 (538)
.+...|+++.|...+.+..
T Consensus 77 ~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 77 AYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 7777777777777776654
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00021 Score=49.19 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
...|++++|+++|+++ ....|++..... .++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~-l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKA-LQRNPDNPEARL-LLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHH-HHHTTTSHHHHH-HHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHH-HHHCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777777777 777777777666 777777777777777777777665
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.047 Score=53.23 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=148.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCC-----------CCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMP-----------HRNVVSWTTMISGCAQNGK--SRQALSLFNEMRRARVGLDQVA 255 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 255 (538)
.+.+-+..|...|.+++|.++----. .-+...++..-.+|.+..+ +-+.+.-++++++.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 44555556777777777765422111 0122345555566666554 3455566777888888898764
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--------------C
Q 044988 256 LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--------------R 321 (538)
Q Consensus 256 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--------------~ 321 (538)
. ...|+-.|.+.+|.++|..- |.. |..+..|.....++.|.+++..-.. .
T Consensus 638 l---A~~~Ay~gKF~EAAklFk~~-------G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 638 L---ADVFAYQGKFHEAAKLFKRS-------GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred H---HHHHHhhhhHHHHHHHHHHc-------Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 3 34466678888888777543 222 2334444444445555544433211 1
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHH
Q 044988 322 NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSL 401 (538)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 401 (538)
++.--.+....+...|+.++|+ ..+...|-.+-+.++-+++-. .+..+...+..-+.+...+.-|-++
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi-------~i~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAI-------EICGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhh-------hhhhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHH
Confidence 1111122334455556665553 444555555555555444432 2344555555555566677778888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH---------HHHHHHhcCChHHHHHHHHH
Q 044988 402 VQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL---------VANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 402 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~---------l~~~~~~~g~~~~A~~~~~~ 472 (538)
|..|. | ..+++......+++++|..+.++. -++.|+....|... --.+|.++|+..||..++++
T Consensus 770 F~k~g---D---~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 770 FLKMG---D---LKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHhc---c---HHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 88875 2 134566677788888888888888 77777654433312 23578889999999999998
Q ss_pred HHhCCC
Q 044988 473 MIKMGV 478 (538)
Q Consensus 473 m~~~~~ 478 (538)
+....+
T Consensus 843 Ltnnav 848 (1081)
T KOG1538|consen 843 LTNNAV 848 (1081)
T ss_pred hhhhhh
Confidence 865433
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.00084 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 419 LGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
..+.+.+++++|.++++.+ ....|+++..+. ..+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~-~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERA-LELDPDDPELWL-QRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHH-HHhCcccchhhH-HHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678889999999999999 888999998788 889999999999999999998886433
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.027 Score=51.84 Aligned_cols=285 Identities=11% Similarity=-0.054 Sum_probs=144.8
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHH
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDID 204 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 204 (538)
+.+..++..|+..+...++.+ +.+..-|..-...+...|+ +++|.--.+.-.+ .......-.-+++...++..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~---~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGR---FEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHh---HhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 344455566666666666654 3334445555555555555 5544433322221 11112222233334444444
Q ss_pred HHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHh
Q 044988 205 GAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR-VGLDQVALVAALS-ACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 205 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~ 282 (538)
+|.+.++. ...| ....++..++...... -+|.-.++..+-. ++.-.|+.+.|..+--.+.+.
T Consensus 135 ~A~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 135 EAEEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 44444441 1111 1122233333322221 1244445444433 345678888888877777775
Q ss_pred ccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHH
Q 044988 283 FSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEG 362 (538)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a 362 (538)
.+.+......-..++--.++.+.+...|++...-++....+-. ++.. -+.+..+..-.+-..+.|.+..|
T Consensus 199 -----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~-~~~~----~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 199 -----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS-ASMM----PKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred -----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh-Hhhh----HHHHHHHHhhhhhHhhccchhHH
Confidence 3443333222233344567888999999888764332221100 0000 00001111222334577888899
Q ss_pred HHHHHHhhhh--cCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH-HHH--HHHHHHHhcCCHHHHHHHHHHc
Q 044988 363 RQFFECMNQN--WGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDA-VLG--SLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 363 ~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~--~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
.+++.+.+.. .+..|+...|.....+..+.|+.++|+.--++.. ..|.. ... .-..++...+++++|.+-++++
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887732 0223345567777777888899999988887765 33432 222 2233466778888888888888
Q ss_pred hhccCCC
Q 044988 438 VAEIDPE 444 (538)
Q Consensus 438 ~~~~~p~ 444 (538)
.+...+
T Consensus 348 -~q~~~s 353 (486)
T KOG0550|consen 348 -MQLEKD 353 (486)
T ss_pred -Hhhccc
Confidence 444333
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.25 E-value=0.0025 Score=60.43 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=94.6
Q ss_pred CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhC--CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHh
Q 044988 80 NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDK--ETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRT 157 (538)
Q Consensus 80 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (538)
..+......+++.+....+.+.+..++.+.+.. ....-..|.+++++.|...|..+.+..++..=...|+-||.++++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777888888888889999999988864 333445677899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHhhcCCC----CCchhHHHHHHHHHhc
Q 044988 158 NLMNLYLMSGGECGVGCARLLFDDMPA----RSVVSWNSLLKGYVKR 200 (538)
Q Consensus 158 ~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~ 200 (538)
.||..+.+.|+ +..|.++...|.. .+..++...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~---~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGN---YKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhccc---HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999 9999888877653 2445555555555444
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0038 Score=52.17 Aligned_cols=94 Identities=12% Similarity=-0.078 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL 452 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~ 452 (538)
....|..+...+...|++++|...|++.. ..|+ ..++..+...+...|++++|+..++++ ..+.|.....+. .
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-l~~~~~~~~~~~-~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-LERNPFLPQALN-N 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHH-H
Confidence 35677888888889999999999998873 2233 347888888899999999999999999 888888887666 7
Q ss_pred HHHHHH-------hcCChHHHHHHHHHH
Q 044988 453 VANVYA-------AAKRWQDVAAVRQKM 473 (538)
Q Consensus 453 l~~~~~-------~~g~~~~A~~~~~~m 473 (538)
++.++. +.|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777777 888888766666554
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.1 Score=46.40 Aligned_cols=58 Identities=5% Similarity=-0.018 Sum_probs=38.8
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhCCCCCCcc-hH---HHHHHHHHccCCcHHHHHHHHHHHHhC
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDKETEPDEY-TY---SFLLSVCARCGLFREGEQVHGRVLASG 148 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~---~~li~~~~~~~~~~~a~~~~~~~~~~~ 148 (538)
....+.+.|++++|.+.|+.+... -|+.. .. -.+..++.+.++++.|...+++.++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344456678888888888888764 34332 21 344566777888888888888887763
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.0014 Score=59.80 Aligned_cols=126 Identities=11% Similarity=0.017 Sum_probs=66.2
Q ss_pred HHHHHhcccCcHHHHHHHHHH---hhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHH
Q 044988 348 GVLSACSHGGFVDEGRQFFEC---MNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--------MKPNDAVLG 415 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~ 415 (538)
.+.+.|.-.|+++.|....+. +.+.+|-.. ....+..|..++.-.|+++.|.+.|+..- ......+.-
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 333344444666666655443 222333222 24456666677777777777777665431 112234445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHch-----hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 416 SLLLGCRIHNNAELASQVAQKLV-----AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+|...|.-..++++|+.++.+-. .+-......++- .|+++|...|..++|+.+.+.-.
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw-SLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW-SLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhhhHHHHHHHHHHHH
Confidence 56666666666777766665543 111111222244 56667777777777666554443
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0018 Score=54.33 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCcchHHHHHHHHhc-----CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHcc----------------CCcHHHHH
Q 044988 81 PSTAIWNQMIRGHAR-----SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARC----------------GLFREGEQ 139 (538)
Q Consensus 81 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~ 139 (538)
.+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+. .+.+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444432 244444444555555555555555555555544321 13456777
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 140 VHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888887777665
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.17 Score=46.54 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=131.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 230 QNGKSRQALSLFNEMRRARVGLDQVA--LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 230 ~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
-.|+++.|.+-|+.|... |...- ...|.-..-+.|+.+.|..+-+..-+. -|.-.-.+.+.+...|..|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-----Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-----APQLPWAARATLEARCAAGD 203 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHhcCC
Confidence 346666666666666531 11111 111111123455666665555555543 34444444566666666666
Q ss_pred HHHHHHHHHhcCC-----CCcc--hHHHHHHHHHh---cCCccHHH--------------HHHHHHHHHhcccCcHHHHH
Q 044988 308 IEEAYGVFRKMQR-----RNTV--SWTSMITGFAK---QGYAQEAL--------------LTFLGVLSACSHGGFVDEGR 363 (538)
Q Consensus 308 ~~~a~~~~~~m~~-----~~~~--~~~~li~~~~~---~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~ 363 (538)
|+.|+++.+.-.. ++.. .-..|+.+-.. ..+...|. ..-.....++.+.|++.++-
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 6666666654332 2211 00111111000 00111111 22333456777888999999
Q ss_pred HHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 364 QFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 364 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
.+++.+-+. .|.+..+...+ +.+.|+. +..-+++.. .+| +......+..+....|++..|..--+..
T Consensus 284 ~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa- 355 (531)
T COG3898 284 KILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA- 355 (531)
T ss_pred hHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence 999998865 56665544433 3455543 333332221 344 4677777888899999999999988888
Q ss_pred hccCCCCcccHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 044988 439 AEIDPEQAAGYLALVANVYAAA-KRWQDVAAVRQKMIKM 476 (538)
Q Consensus 439 ~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 476 (538)
....|.... |. +|+++-.-. |+-.++...+-+-...
T Consensus 356 ~r~~pres~-~l-LlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 356 AREAPRESA-YL-LLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhCchhhH-HH-HHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888898877 88 888887654 9999999998887754
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.013 Score=53.44 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRAR-VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA 297 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (538)
.+|..++...-+.+..+.|..+|.+..+.+ +..+.....+.+. +...++.+.|..+|+...+. .+.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-----f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-----FPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-----HTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-----CCCCHHHHHH
Confidence 468888999889889999999999998543 2333333333332 33357788899999999987 8888899999
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQRR--NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
.++.+...|+.+.|+.+|++.... .... +...|...+..-.+.|+++.+..+.+++.+.
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~----------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--- 136 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQ----------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL--- 136 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHH----------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 999999999999999999998762 2110 1133444444444455777888888887765
Q ss_pred CccHHHHHHHHHHh
Q 044988 376 KPRIEHYGCMVDLF 389 (538)
Q Consensus 376 ~p~~~~~~~l~~~~ 389 (538)
.|+......+++-|
T Consensus 137 ~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 137 FPEDNSLELFSDRY 150 (280)
T ss_dssp TTTS-HHHHHHCCT
T ss_pred hhhhhHHHHHHHHh
Confidence 34433344444433
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.32 Score=49.72 Aligned_cols=376 Identities=10% Similarity=0.065 Sum_probs=203.3
Q ss_pred cHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHHHh
Q 044988 19 TTRQIFSLL--QIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--PSTAIWNQMIRGHA 94 (538)
Q Consensus 19 ~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 94 (538)
.|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|...++.++|..++++... |+......+..+|+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 456666654 4678889999888877766655 888999999999999999999999998874 66555556667788
Q ss_pred cCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccC-C---------cHHHHHHHHHHHHhC-CCCchhHHhHHHHHH
Q 044988 95 RSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCG-L---------FREGEQVHGRVLASG-YCSNVFIRTNLMNLY 163 (538)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 163 (538)
+-+++.+-.+.--+|-+ ..+-++..|-.+++...+.. . ..-|...++.+.+.+ -..+..-..-.....
T Consensus 122 R~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 88777654443333333 23446667777777765432 1 234556666666654 212222222233445
Q ss_pred HhcCCCCChhHHHHHhhc-----CCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHH--------
Q 044988 164 LMSGGECGVGCARLLFDD-----MPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQ-------- 230 (538)
Q Consensus 164 ~~~g~~~~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-------- 230 (538)
...|+ .++|..++.. ....+...-+.-+..+...+++.+..++-.++...+..-|...+..+.+
T Consensus 201 ~~~~k---~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~ 277 (932)
T KOG2053|consen 201 ELQGK---YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKE 277 (932)
T ss_pred Hhccc---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccc
Confidence 56777 8888888732 2223444555667778888888887777766553211113333322111
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCChHHHHHHHHHHHHhccCCCCCcchhHH----
Q 044988 231 --------NGKSRQALSLFNEMRRARVGLDQVALVAALSACA---EIGDLKLGKWIHSYVEENFSVGREPVLVSLN---- 295 (538)
Q Consensus 231 --------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---- 295 (538)
.+..+...+..++.... -....|-+-+.+.. ..|+.+++...| +.+....+....|...|
T Consensus 278 ~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y--~~kfg~kpcc~~Dl~~yl~~l 352 (932)
T KOG2053|consen 278 PAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYY--FKKFGDKPCCAIDLNHYLGHL 352 (932)
T ss_pred cchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHH--HHHhCCCcHhHhhHHHhhccC
Confidence 11122222222222221 12233444444443 346666654333 22221111111122111
Q ss_pred -----HHHHHHHHhCC-CHHHHHHHHH----------------hcCCCCcchHH-HHHHHHHhcCCcc------------
Q 044988 296 -----NALIHMYASCG-EIEEAYGVFR----------------KMQRRNTVSWT-SMITGFAKQGYAQ------------ 340 (538)
Q Consensus 296 -----~~l~~~~~~~g-~~~~a~~~~~----------------~m~~~~~~~~~-~li~~~~~~~~~~------------ 340 (538)
..++..+.... +.....+++. .|.......|. .++..|.+.=...
T Consensus 353 ~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~ 432 (932)
T KOG2053|consen 353 NIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGD 432 (932)
T ss_pred CHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHH
Confidence 23344443322 2222222211 11112333333 3333443331220
Q ss_pred H-HHHHHHHHHHHhcccCcHH---HHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 341 E-ALLTFLGVLSACSHGGFVD---EGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 341 ~-a~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
+ +.-+.+.++..|-+.++.. +|+-+++..... -+.|..+--.+|..|.-.|-+..|.++|+.+.
T Consensus 433 ~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 433 ELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 1 1155667778888887765 455555555433 12355566678999999999999999999885
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.01 Score=58.89 Aligned_cols=150 Identities=9% Similarity=-0.015 Sum_probs=97.9
Q ss_pred CCCcchhHHHHHHHHHHhC-----CCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCc
Q 044988 287 REPVLVSLNNALIHMYASC-----GEIEEAYGVFRKMQR--RN-TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGF 358 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~ 358 (538)
..|.+...|..++.+.... ++.+.|..+|++..+ |+ ...|..+..++.....+.. ....+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~------------~~~~~ 399 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP------------LDEKQ 399 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC------------ccHHH
Confidence 4667777777777765432 236688888888776 33 2334333333322211110 00113
Q ss_pred HHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 359 VDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
+..+.+.............+...|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.++|.+.++++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445444433321123355778877777777899999999998874 6788888999999999999999999999999
Q ss_pred hhccCCCCcccHH
Q 044988 438 VAEIDPEQAAGYL 450 (538)
Q Consensus 438 ~~~~~p~~~~~~~ 450 (538)
..+.|..++ |.
T Consensus 480 -~~L~P~~pt-~~ 490 (517)
T PRK10153 480 -FNLRPGENT-LY 490 (517)
T ss_pred -HhcCCCCch-HH
Confidence 999999988 44
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.00076 Score=59.13 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=78.4
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHH
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDV 466 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 466 (538)
+.+.+++.+|+..|.+.. +.| |++.|..=..+|.+.|.++.|++-.+.. ..++|....+|. .|+.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A-l~iDp~yskay~-RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESA-LSIDPHYSKAYG-RLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHH-HhcChHHHHHHH-HHHHHHHccCcHHHH
Confidence 457899999999998874 454 4667777778899999999999999999 999999999999 999999999999999
Q ss_pred HHHHHHHHhCCCCCCCce
Q 044988 467 AAVRQKMIKMGVRKPPGQ 484 (538)
Q Consensus 467 ~~~~~~m~~~~~~~~~~~ 484 (538)
++.|++..+ +.|...+
T Consensus 169 ~~aykKaLe--ldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNES 184 (304)
T ss_pred HHHHHhhhc--cCCCcHH
Confidence 999998876 4444333
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0016 Score=44.26 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCc
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQA 446 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~ 446 (538)
+...+...|++++|.+.|+.+. ..|+ ...+..+..++...|++++|...|+++ .+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA-LELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH-HHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCCC
Confidence 3445666677777777776663 3343 455666666677777777777777777 66666653
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.0064 Score=48.87 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=80.1
Q ss_pred CCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 374 GIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 374 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
|+.++ ....-...--+-..|++++|..+|+-+. -.-|..-|..|..++...+++++|+..|..+ .-+.++++..+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-~~l~~~dp~p~f 109 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA-FTLLKNDYRPVF 109 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccCCCCccc
Confidence 55554 2222333444557899999999999874 2345666778888899999999999999999 888899998888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 451 ALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 451 ~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+.+|...|+.+.|...|.....
T Consensus 110 -~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 -FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999998876
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.0031 Score=52.90 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=32.0
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC
Q 044988 98 TPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL 133 (538)
Q Consensus 98 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 133 (538)
+-+-|++++++|...|+-||..|+..++..+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999999977654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.04 E-value=0.028 Score=55.81 Aligned_cols=137 Identities=9% Similarity=0.064 Sum_probs=96.0
Q ss_pred CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhc-------
Q 044988 321 RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRA------- 392 (538)
Q Consensus 321 ~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~------- 392 (538)
.+...|...+.+.....+.+. ++...|..+|++..+. .|+ ...|..+..+|...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~---------------~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~ 396 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDA---------------KSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLD 396 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCcc
Confidence 466677777666543332221 2578999999999865 786 45555554444322
Q ss_pred -CChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHH
Q 044988 393 -GLMDEAFSLVQNMP----MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVA 467 (538)
Q Consensus 393 -g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 467 (538)
+++..+.+..++.. ...+...|..+...+...|++++|...++++ ..+.|+ ...|. .++.++...|+.++|.
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L~ps-~~a~~-~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDLEMS-WLNYV-LLGKVYELKGDNRLAA 473 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC-HHHHH-HHHHHHHHcCCHHHHH
Confidence 12344455544421 2344577777777777889999999999999 999996 45588 9999999999999999
Q ss_pred HHHHHHHhCCC
Q 044988 468 AVRQKMIKMGV 478 (538)
Q Consensus 468 ~~~~~m~~~~~ 478 (538)
+.+++....+.
T Consensus 474 ~~~~~A~~L~P 484 (517)
T PRK10153 474 DAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHhcCC
Confidence 99999876443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.28 Score=45.45 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=56.7
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 299 IHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
+.-+...|+...|.++-.+-.-|+..-|...+.+|+..+++++ -..+-. . +-.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~e--------------------L~~fa~---s----kKs 236 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDE--------------------LEKFAK---S----KKS 236 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHH--------------------HHHHHh---C----CCC
Confidence 4445556666666666666665666666666666666664432 222211 1 112
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQK 436 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (538)
+.-|...+.++.+.|+..+|..+..++. +..-+..|.+.|++.+|.+..-+
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 2455566666666666666666666643 12334455566666666554443
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.98 E-value=0.021 Score=42.40 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhccCCCCCcc
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARV-GLDQVALVAALSACAEIG--------DLKLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ..-....+|+.+... ...|+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~----~lKP~ 103 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN----KLKPN 103 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh----ccCCc
Confidence 34455556666888888888888888888 788888888887766432 122344556666555 56666
Q ss_pred hhHHHHHHHHHH
Q 044988 292 VSLNNALIHMYA 303 (538)
Q Consensus 292 ~~~~~~l~~~~~ 303 (538)
..+|+.++..+.
T Consensus 104 ~etYnivl~~Ll 115 (120)
T PF08579_consen 104 DETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0037 Score=42.86 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=36.4
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
..|+++.|...++.+.+. .|.+..++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777665 666666666777788888888888888877765
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.0036 Score=57.25 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=34.2
Q ss_pred HHHhcCCCchHHHHHHHHhHhCCCCCCc----chHHHHHHHHHccCCcHHHHHHHH
Q 044988 91 RGHARSETPEKSVYLYKQMIDKETEPDE----YTYSFLLSVCARCGLFREGEQVHG 142 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~ 142 (538)
.-+|+.|+....+.+|+...+-|. -|- ..|..|..+|.-.+++++|.+++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 346788888888888888887662 332 245555666666677777777643
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.21 Score=44.38 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=33.8
Q ss_pred HHHHHhcCCHHHHHHHHHHchhccCCCCcc---cHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 418 LLGCRIHNNAELASQVAQKLVAEIDPEQAA---GYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
..-|.+.|.+..|..-++.+ .+.-|+.+. +.. .++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v-~~~Yp~t~~~~eal~-~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQM-LRDYPDTQATRDALP-LMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHH-HHHCCCCchHHHHHH-HHHHHHHHcCChHHHHHHHHHHh
Confidence 34466667777777777776 555555443 233 55667777777777777665544
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.83 E-value=0.078 Score=51.78 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHH
Q 044988 253 QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITG 332 (538)
Q Consensus 253 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 332 (538)
..+...+..-+.+...+..|.++|..+-.. ..+++.....++|++|..+-++.++--...|-.-..-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCccccccccchHHHH
Confidence 334444444455666777777777776554 4677778888889999888888876222223333444
Q ss_pred HHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 333 FAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 333 ~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
++...++++|. .+|.+.|+-.+|.++++++...
T Consensus 814 LAE~DrFeEAq-------kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQ-------KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHH-------HHHHHhcchHHHHHHHHHhhhh
Confidence 55556666654 5666778888888888877543
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.0032 Score=43.33 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHchhccCC
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHN-NAELASQVAQKLVAEIDP 443 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~p 443 (538)
..+|..+...+...|++++|+..|++.. ..|+ ...|..+..++...| ++++|++.+++. .++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a-l~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA-LKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH-HHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH-HHcCc
Confidence 4566677777777777777777776653 3343 556666666777777 577777777777 65555
No 200
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.76 E-value=0.58 Score=45.12 Aligned_cols=426 Identities=10% Similarity=0.090 Sum_probs=233.9
Q ss_pred CCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHH
Q 044988 13 TSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE--NPSTAIWNQMI 90 (538)
Q Consensus 13 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li 90 (538)
.|-+-.++..|++-+... ..++++..++++... ++.++..|..-+..-.+..+++....+|.+-. .-+...|..-|
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 345567888888887666 889999999988875 34467888888888888999999999998755 35677777776
Q ss_pred HHHhc-CCCchH----HHHHHHHhHh-CCCCCCc-chHHHHHHH---------HHccCCcHHHHHHHHHHHHhCCCCchh
Q 044988 91 RGHAR-SETPEK----SVYLYKQMID-KETEPDE-YTYSFLLSV---------CARCGLFREGEQVHGRVLASGYCSNVF 154 (538)
Q Consensus 91 ~~~~~-~~~~~~----a~~~~~~m~~-~~~~p~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 154 (538)
.---+ .|+... ..+.|+-... -|+.+-. ..|+..+.. +....+++...+++++++...+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54322 233322 2333443333 3444322 234444433 233446667777787776543221111
Q ss_pred HHhHH------HHHHH-------hcCCCCChhHHHHHhhcCCC------C--------Cc-------hhHHHHHHHHHhc
Q 044988 155 IRTNL------MNLYL-------MSGGECGVGCARLLFDDMPA------R--------SV-------VSWNSLLKGYVKR 200 (538)
Q Consensus 155 ~~~~l------~~~~~-------~~g~~~~~~~a~~~~~~~~~------~--------~~-------~~~~~li~~~~~~ 200 (538)
.|+.. ++... +... +-.|.++.+++.. + .+ ..|-.+|.-=-..
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~---Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPE---YMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 22111 11000 1111 2333333333221 0 00 0122222110000
Q ss_pred ------CCHH--HHHHHHcc----CC-CCChH-HHHHHH----HHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 044988 201 ------GDID--GAWKIFDE----MP-HRNVV-SWTTMI----SGCAQNGK-------SRQALSLFNEMRRARVGLDQVA 255 (538)
Q Consensus 201 ------g~~~--~A~~~~~~----m~-~~~~~-~~~~li----~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~ 255 (538)
|..- ...-+++. +. .|++. -|...+ ..+...|+ .+++..++++....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000 00 01110 011111 11222222 4566666666654333334444
Q ss_pred HHHHHHHHHccC---ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----CcchHH
Q 044988 256 LVAALSACAEIG---DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR-----NTVSWT 327 (538)
Q Consensus 256 ~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~ 327 (538)
|..+..---..- ..+....+++.+... .......+|..+++.-.+..-+..|+.+|.+..+. ++..++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~----~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKI----EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhh----hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 444433222122 245555666666665 33333445667888888888899999999998862 455666
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP- 406 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 406 (538)
+++.-|+. ++...|..+|+.-.+.+|-. ..--...++-+...++-..|..+|++..
T Consensus 407 A~mEy~cs---------------------kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 407 ALMEYYCS---------------------KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHhc---------------------CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 66666554 36788899999887775433 3334566777788899999999999885
Q ss_pred --CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC--C---cccHHHHHHHHHHhcCChHHHHHHHHHH
Q 044988 407 --MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE--Q---AAGYLALVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 407 --~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 473 (538)
..|+ ...|..++.--..-|+...+.++-++. ....|. . .. -. .+++-|.-.+.+..-..-++.|
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~-~~af~~~qe~~~~~-~~-~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR-FTAFPADQEYEGNE-TA-LFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhcchhhcCCCCh-HH-HHHHHHhhcccccccHHHHHhh
Confidence 2333 579999999999999999999999988 444441 1 11 22 4556666666554433333333
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.035 Score=42.79 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=50.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHhCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC---chhHHhHHHHHHH
Q 044988 90 IRGHARSETPEKSVYLYKQMIDKETEPD--EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCS---NVFIRTNLMNLYL 164 (538)
Q Consensus 90 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 164 (538)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++..... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3445567777777777777777665443 2355566666777777777777777776542 11 1222222333445
Q ss_pred hcCCCCChhHHHHHhh
Q 044988 165 MSGGECGVGCARLLFD 180 (538)
Q Consensus 165 ~~g~~~~~~~a~~~~~ 180 (538)
..|+ .++|.+.+-
T Consensus 87 ~~gr---~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGR---PKEALEWLL 99 (120)
T ss_pred HCCC---HHHHHHHHH
Confidence 5555 555555443
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.70 E-value=0.17 Score=49.96 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=122.1
Q ss_pred HHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCccHHHHHHHHHHH-
Q 044988 274 WIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-RNTVSWTSMITGFAKQGYAQEALLTFLGVLS- 351 (538)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~- 351 (538)
-+|..+... .||.. ..++....-.|+-+.+.+.+.+..+ ++...--+.+.. -.|..++.
T Consensus 178 G~f~L~lSl-----LPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L-----------L~y~~~~~~ 238 (468)
T PF10300_consen 178 GLFNLVLSL-----LPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL-----------LWYHLVVPS 238 (468)
T ss_pred HHHHHHHHh-----CCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH-----------HHHHHHHHH
Confidence 356666665 66654 3678888888999999998887655 232211111100 12222222
Q ss_pred Hhc---ccCcHHHHHHHHHHhhhhcCCCccHHHHHHH-HHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHH
Q 044988 352 ACS---HGGFVDEGRQFFECMNQNWGIKPRIEHYGCM-VDLFSRAGLMDEAFSLVQNMPM------KPNDAVLGSLLLGC 421 (538)
Q Consensus 352 ~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~ 421 (538)
.+. .....+.|.++++.+.++ -|+...|... .+.+...|++++|++.|++... +.....+--+...+
T Consensus 239 ~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 239 FLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred HcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 222 245789999999999977 5886665544 4667789999999999997641 12234444556678
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCCh-------HHHHHHHHHHHh
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRW-------QDVAAVRQKMIK 475 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~m~~ 475 (538)
.-..++++|.+.|..+ .+...-+...|.-..+-++...|+. ++|.++|++...
T Consensus 316 ~~~~~w~~A~~~f~~L-~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRL-LKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHchHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999 7777777776663556677788888 999999998863
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.029 Score=50.29 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARVGLDQ----VALVAALSACAEIGDLKLGKWIHSYVEE 281 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 281 (538)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...+...|+++.|...|..+.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333334445555555555555542 2221 2333444444444444444444444444
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.019 Score=51.48 Aligned_cols=94 Identities=18% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHH--HH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-MKPND----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLA--LV 453 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~--~l 453 (538)
.|......+.+.|++++|...|+.+. ..|+. ..+--+...+...|++++|...|+.+ ....|+++..... .+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v-v~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV-VKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCcchhHHHHHH
Confidence 34444444455567777776666653 23432 34445556667777777777777777 5555654432221 34
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044988 454 ANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 454 ~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.++...|++++|..+++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5666677777777777777665
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=96.59 E-value=0.063 Score=43.30 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=66.7
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCc
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ---RRNTVSWTSMITGFAKQGYA 339 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~ 339 (538)
+...|++++|..+|..+... .+.+...+..|..++-..++++.|...|.... ..|+.+.-.....+...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 45678888888888887775 56667777788888888888888888876432 35666666667777777766
Q ss_pred cHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 340 QEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
+.|...|..++.-+....-.++|..+++.+.
T Consensus 122 ~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 122 AKARQCFELVNERTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 6666555555543322222334444444443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.52 E-value=0.11 Score=42.40 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=105.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHHHHHHhcC
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN----PSTAIWNQMIRGHARS 96 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~ 96 (538)
..+..+....=|++...+ +........|++.---.|.+.....|+..+|...|++... .|....-.+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~R--ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLR--EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHH--HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 345555555555554332 2222333467777777888999999999999999987663 5666667777788888
Q ss_pred CCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 97 ETPEKSVYLYKQMIDKET-EPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 97 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
+++..|...++.+.+... .-++.+...+.+.+...|...+|+..|+..... -|+...-.-....+.+.|+ .+++
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr---~~ea 212 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGR---LREA 212 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcc---hhHH
Confidence 999999999999877531 013445667778888999999999999998886 3555444445566677776 6555
Q ss_pred HHHhhc
Q 044988 176 RLLFDD 181 (538)
Q Consensus 176 ~~~~~~ 181 (538)
..-+..
T Consensus 213 ~aq~~~ 218 (251)
T COG4700 213 NAQYVA 218 (251)
T ss_pred HHHHHH
Confidence 544333
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.46 E-value=0.0092 Score=48.47 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCC
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI-----KMGVRKPP 482 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 482 (538)
....++..+...|++++|.++++.+ ....|-+...|. .++.+|...|+..+|.++|+++. +-|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~-l~~dP~~E~~~~-~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRA-LALDPYDEEAYR-LLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHHSTT-HHHHH-HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH-HhcCCCCHHHHH-HHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788899999999999999 999999999888 89999999999999999998885 45776654
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.42 E-value=0.41 Score=39.30 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----Cc
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR-----NT 323 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~ 323 (538)
..|+...-..+..++...|+..+|...|++...- .+..+....-.+.++....+++..|...++++.+- .+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 3455555555666666666666666666666554 45556666566666666677777777776665541 12
Q ss_pred chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHH
Q 044988 324 VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLV 402 (538)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (538)
.+.-.+...|... |.+..|+.-|+....- -|+....-.....+.++|+.+++..-+
T Consensus 161 d~~Ll~aR~laa~--------------------g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 161 DGHLLFARTLAAQ--------------------GKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred CchHHHHHHHHhc--------------------CCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 2222222333333 3455555556655533 455444334444455666666554433
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.38 E-value=0.017 Score=54.54 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNM-PMKPND----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL 452 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~ 452 (538)
+...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++ .++.+.. |. .
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA-Lelsn~~---f~-~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA-LRDYNLK---FS-T 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcchh---HH-H
Confidence 4667888888888888888888888774 456664 35778888888888888888888888 5542111 32 1
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHhCCC
Q 044988 453 VAN--VYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 453 l~~--~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
+.. .+....+.++..++++.+...|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 11223344566677777777665
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.37 E-value=0.92 Score=42.79 Aligned_cols=377 Identities=11% Similarity=0.081 Sum_probs=207.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCc---chHHHHHHHHhcCCCchHHHHHHHHhHhCCC
Q 044988 38 QIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPST---AIWNQMIRGHARSETPEKSVYLYKQMIDKET 114 (538)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 114 (538)
++-+.+... +.+...|-+|++-|...|..++.++++++|..|-+ ..|..-+++-...+++.....+|.+.+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 444444332 44678899999999999999999999999987655 367777877777788888888998888753
Q ss_pred CCCcchHHHHHHHHHccCCc------HHHHHHHHHHHH-hCCCCc-hhHHhHHHHHHH---hcCC---CCChhHHHHHhh
Q 044988 115 EPDEYTYSFLLSVCARCGLF------REGEQVHGRVLA-SGYCSN-VFIRTNLMNLYL---MSGG---ECGVGCARLLFD 180 (538)
Q Consensus 115 ~p~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g~---~~~~~~a~~~~~ 180 (538)
.+...|...+..-.+.... ....+.|+-... .++.|- ...|+..+...- ..|. .+.++...+.+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4455566555544333211 112233333333 233333 223443333221 1111 112444555555
Q ss_pred cCCCC----------CchhHHHHHHHH-Hh--cC----CHHHHHHHHccCC-----------------------------
Q 044988 181 DMPAR----------SVVSWNSLLKGY-VK--RG----DIDGAWKIFDEMP----------------------------- 214 (538)
Q Consensus 181 ~~~~~----------~~~~~~~li~~~-~~--~g----~~~~A~~~~~~m~----------------------------- 214 (538)
++... |-..|..=++-. ++ .| -+-.|.+.+++..
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 55431 101111000000 00 00 0111111111110
Q ss_pred --------C-----CC------hHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044988 215 --------H-----RN------VVSWTTMI--------------SGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALS 261 (538)
Q Consensus 215 --------~-----~~------~~~~~~li--------------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 261 (538)
. .+ ...|+..+ .-+...++-+.|+....+-.. ..|+...+ +-.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~~~--lse 341 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLTMF--LSE 341 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchhee--HHH
Confidence 0 00 01122211 223345677788877665433 23442211 111
Q ss_pred HHHccCChHHHHHHHHHHHHhc----------cCCCC---------------CcchhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 262 ACAEIGDLKLGKWIHSYVEENF----------SVGRE---------------PVLVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~----------~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
.+.-..+-+.....|+.+.+.. ...+. ..-..+|..+++.-.+..-++.|+.+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2222233333222222221110 00001 1123456677777778888999999999
Q ss_pred hcCC-----CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHH-HHHHHHhh
Q 044988 317 KMQR-----RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHY-GCMVDLFS 390 (538)
Q Consensus 317 ~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~ 390 (538)
+..+ +++..+++++..++.. +...|..+|+.-... -||...| +-.+.-+.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~~~---------------------d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi 477 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYATG---------------------DRATAYNIFELGLLK---FPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHhcC---------------------CcchHHHHHHHHHHh---CCCchHHHHHHHHHHH
Confidence 8876 5677888888776643 566777888876654 3554443 45566677
Q ss_pred hcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 391 RAGLMDEAFSLVQNMP--MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 391 ~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+.++-+.|..+|+... +..+ ...|..+|.--..-|+...+..+-+++ .+..|....
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf-~e~~pQen~ 537 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF-RELVPQENL 537 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH-HHHcCcHhH
Confidence 8899999999998653 2223 568889999889999999999988888 788887644
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.4 Score=44.48 Aligned_cols=309 Identities=13% Similarity=0.063 Sum_probs=171.9
Q ss_pred hCCCCchhHHh-----HHHHHHHhcCCCCChhHHHHHhhcCCCCC---chhHHHHHHHHHhcC---CHHHHHHHHccCCC
Q 044988 147 SGYCSNVFIRT-----NLMNLYLMSGGECGVGCARLLFDDMPARS---VVSWNSLLKGYVKRG---DIDGAWKIFDEMPH 215 (538)
Q Consensus 147 ~~~~~~~~~~~-----~l~~~~~~~g~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 215 (538)
.|++.+..-|. .+++-+...+. +..|.++-.-+..|. ...|.....-+.+.. +-+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~---Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHL---YSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcch---hHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35555544443 34555666666 788888777776664 455555666665553 22333344444444
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCC---
Q 044988 216 --RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVG----LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVG--- 286 (538)
Q Consensus 216 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--- 286 (538)
....+|..+.......|+++-|..+++.=...+.+ .+..-+...+.-+...|+.+....++-.+.......
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 45567888887777889988888887643222211 122234455556666777776666666555541100
Q ss_pred ----CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH----HHHHHHHHHhcccC-
Q 044988 287 ----REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL----LTFLGVLSACSHGG- 357 (538)
Q Consensus 287 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~----~~~~~ll~~~~~~~- 357 (538)
..|.... +-.-+++..+-..-..+|+.-..+ ..+.....+.+...+.+ .......++|++..
T Consensus 583 ~~l~~~p~a~~----lY~~~~r~~~~~~l~d~y~q~dn~-----~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~ 653 (829)
T KOG2280|consen 583 MTLRNQPLALS----LYRQFMRHQDRATLYDFYNQDDNH-----QALASFHLQASYAAETIEGRIPALKTAANAFAKSKE 653 (829)
T ss_pred HHHHhchhhhH----HHHHHHHhhchhhhhhhhhcccch-----hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhh
Confidence 0111111 111122222222222222221110 00000111110000000 22223334444433
Q ss_pred ---------cHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044988 358 ---------FVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAE 428 (538)
Q Consensus 358 ---------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 428 (538)
+..+-.++.+.+...+|......+.+--+.-+...|+..+|.++-++.+ -||...|---+.+++..++++
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kwe 732 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWE 732 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHH
Confidence 2334444555555555655555566666677778999999999999998 589988888899999999999
Q ss_pred HHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 429 LASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 429 ~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+-+++-+.. . .| ..|. -...+|.+.|+.+||.+++.+...
T Consensus 733 eLekfAksk-k--sP---IGy~-PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 733 ELEKFAKSK-K--SP---IGYL-PFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHHHhcc-C--CC---CCch-hHHHHHHhcccHHHHhhhhhccCC
Confidence 888877766 2 13 3355 445899999999999999887653
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.91 Score=42.34 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=92.8
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChH-HHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----------
Q 044988 195 KGYVKRGDIDGAWKIFDEMPHRNVV-SWTTMISG--CAQNGKSRQALSLFNEMRRARVGLDQVALVAAL----------- 260 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----------- 260 (538)
.++...|+.+.|.+.--...+-|.. .+...+++ +.-.++.+.+...|++.+. ..|+...-...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 4567778888888776665553332 34444433 3345778888888888776 345444322211
Q ss_pred --HHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 044988 261 --SACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGY 338 (538)
Q Consensus 261 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 338 (538)
+-..+.|++..|...|.+.+.. ++....++...|.....+..+.|+..+|+.-.+...+-|.. .|.+|.+.+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s----yikall~ra- 328 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS----YIKALLRRA- 328 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH----HHHHHHHHH-
Confidence 1234567777777777777665 22234445555556666666777777777777766654432 233333333
Q ss_pred ccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 339 AQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 339 ~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.++...++++.|.+-|+...+.
T Consensus 329 ------------~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 ------------NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 2333345777777777777655
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.0079 Score=42.57 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHch---hccCCCC---cccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLV---AEIDPEQ---AAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.+++.+...+...|++++|+..++++. ....++. ..++. .++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLN-NLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555666666666666666654 1111111 22333 56666777777777777666544
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.12 Score=44.69 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----CCchhHHHHH----
Q 044988 123 FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----RSVVSWNSLL---- 194 (538)
Q Consensus 123 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~~~~~~~li---- 194 (538)
.++..+.-.|.+.-...++.+.++...+.++.....|++.-...|| .+.|...|++..+ -|..+.+.++
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD---~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD---IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3344444444555555555555555444455555555555555555 5555555553332 1222222222
Q ss_pred -HHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044988 195 -KGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRA 247 (538)
Q Consensus 195 -~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 247 (538)
..|.-++++..|...|++++. .|++.-|.-.-+..-.|+..+|++.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234445566666666766554 33344444333334457777777777777764
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.09 Score=46.76 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCChHHHHHHHHHHHHhccCCCCCcch
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACA---EIGDLKLGKWIHSYVEENFSVGREPVLV 292 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (538)
.|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++. ......++..+++.+.+. .|.++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----D~~~i 227 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----DPANI 227 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----CCccH
Confidence 367789999999999999999999999988741 234445555555543 233457888999999986 78888
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHHHH
Q 044988 293 SLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSMIT 331 (538)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~ 331 (538)
.....|...+...|++.+|...|+.|.+ |....+..+|.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 8888899999999999999999999986 44445555544
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.23 E-value=0.014 Score=40.56 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=43.2
Q ss_pred HHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 387 DLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
..|.+.+++++|.+.++.+. ..|+ ...|......+.+.|++++|.+.+++. ....|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~-l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA-LELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH-HHHCCCcHH
Confidence 45677788888888887764 3344 455666667778888888888888888 777777766
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.49 Score=41.19 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc-CCCCCcchhHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFS-VGREPVLVSLNNAL 298 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l 298 (538)
+.+.++..+...|.+.-.+..+++..+...+.+..-...+.+.-.+.||.+.|...++.+.+... ..+......+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666677788888888888888876666777778888888888999998888887765411 11233333333444
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 299 IHMYASCGEIEEAYGVFRKMQRRN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
...|.-.+++..|...+.++...| ++..|.-.-.+. -.|+...|.+..+.+.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll--------------------Ylg~l~DAiK~~e~~~~~--- 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL--------------------YLGKLKDALKQLEAMVQQ--- 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH--------------------HHHHHHHHHHHHHHHhcc---
Confidence 556667788888888888887643 333222111111 124667777888877754
Q ss_pred CccHHHHH
Q 044988 376 KPRIEHYG 383 (538)
Q Consensus 376 ~p~~~~~~ 383 (538)
.|...+-+
T Consensus 316 ~P~~~l~e 323 (366)
T KOG2796|consen 316 DPRHYLHE 323 (366)
T ss_pred CCccchhh
Confidence 55544333
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.87 Score=39.28 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc----cHHHHHHHHHHhhhcCChHHHHH
Q 044988 325 SWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP----RIEHYGCMVDLFSRAGLMDEAFS 400 (538)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 400 (538)
.|+.-...|...|.++.|-.+......+. ..-+++.|++++++........- -...+......+.+..++++|-.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 34444555666666665554444433332 23467777777776543211111 12345556667777778777766
Q ss_pred HHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHch---hccCCCCcccHHHHHHHHHHhcCChHHHHHH
Q 044988 401 LVQNMP-------MKPND-AVLGSLLLGCRIHNNAELASQVAQKLV---AEIDPEQAAGYLALVANVYAAAKRWQDVAAV 469 (538)
Q Consensus 401 ~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 469 (538)
.+.+-. .-|+. ..+...|-.+....++..|.+.++..- .-..|++..+.. .|..+ ...|+.+++..+
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le-nLL~a-yd~gD~E~~~kv 249 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE-NLLTA-YDEGDIEEIKKV 249 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH-HHHHH-hccCCHHHHHHH
Confidence 555432 12332 345566666777789999999998852 223445555455 45444 456777777665
Q ss_pred H
Q 044988 470 R 470 (538)
Q Consensus 470 ~ 470 (538)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.01 E-value=0.013 Score=35.94 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHH
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVA 454 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~ 454 (538)
+|..+..++...|++++|+++++++ .+..|+++..+. .|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~-l~~~P~~~~a~~-~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA-LALDPDDPEAWR-ALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCCHHHHH-Hhh
Confidence 5667888899999999999999999 888999888666 544
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.97 E-value=0.17 Score=43.69 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHH
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAF 399 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 399 (538)
+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 445667777888888888888887532222 345677888888888877543
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.93 E-value=0.65 Score=37.22 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=85.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcC
Q 044988 17 ALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARS 96 (538)
Q Consensus 17 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 96 (538)
......++..+...+.+..+..+++.+.+.+. .++..++.++..|++.+ ..+..+.+.. .++......+++.|.+.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 34456788888888899999999999988874 67889999999998764 3455555552 23445556677777788
Q ss_pred CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHcc-CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 044988 97 ETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARC-GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYL 164 (538)
Q Consensus 97 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (538)
+.++++.-++.++.. +...+..+... ++++.|.++..+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888888776532 33333334333 667777666554 124445555555443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.1 Score=48.28 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
..+++.|..+|.+.+++.+|++..+... .++|....-.-..++...|+++.|+..|+++ .++.|++..+-. -|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka-~k~~P~Nka~~~-el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA-LKLEPSNKAARA-ELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH-HHhCCCcHHHHH-HHHHH
Confidence 4467788889999999999999988763 3466777777788899999999999999999 999999988555 77666
Q ss_pred HHhcCChHH-HHHHHHHHHhC
Q 044988 457 YAAAKRWQD-VAAVRQKMIKM 476 (538)
Q Consensus 457 ~~~~g~~~~-A~~~~~~m~~~ 476 (538)
--+..+..+ ..++|..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 666555544 47888888743
No 223
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.91 E-value=3 Score=44.54 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHH------HHHHhcccCcHHHHHHHHHH
Q 044988 295 NNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLG------VLSACSHGGFVDEGRQFFEC 368 (538)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------ll~~~~~~~~~~~a~~~~~~ 368 (538)
|.-.++.--+.|.+.+|..++..=.+.-...|.+....+...+.+++|..+|.. .+.+|..+|++.+|..+..+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHh
Confidence 344455555667777777666443333334455555666677777777755543 46778888888888888877
Q ss_pred hhhhcCCCccH--HHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 369 MNQNWGIKPRI--EHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 369 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
+.. .-+. .+-..|..-+...++.-+|-+++.+..-.|. ..+..+++...+++|.++....
T Consensus 991 l~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 991 LSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 642 1222 2236677778888998888888887653332 2334566677888888887766
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.89 E-value=0.39 Score=36.91 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=70.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhh----------------------hcCChHHHHHHHHhCCCCCCHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFS----------------------RAGLMDEAFSLVQNMPMKPNDAV 413 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----------------------~~g~~~~A~~~~~~~~~~p~~~~ 413 (538)
.|.++++.++..+.... .+..-+|-+|--.. .+|++.....-+-.+. .+...
T Consensus 15 dG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n--~~se~ 88 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN--KLSEY 88 (161)
T ss_dssp TT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----HH
T ss_pred hchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc--chHHH
Confidence 46777788888777654 12222332222222 3444444444444432 34556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVR 479 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (538)
++..+.....+|+-++-.++++.+ ......++.... -++.+|.+.|+..++.+++++..++|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l-~kn~~~~p~~L~-kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNEL-KKNEEINPEFLV-KIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHH-HHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-hhccCCCHHHHH-HHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 677788899999999999999988 434444555456 8999999999999999999999999883
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.87 E-value=0.0064 Score=34.69 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=28.8
Q ss_pred HHHchhccCCCCcccHHHHHHHHHHhcCChHHHHH
Q 044988 434 AQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAA 468 (538)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 468 (538)
|+++ .++.|+++.+|. .|+.+|...|++++|++
T Consensus 2 y~kA-ie~~P~n~~a~~-nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKA-IELNPNNAEAYN-NLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHH-HHHCCCCHHHHH-HHHHHHHHCcCHHhhcC
Confidence 5666 889999999899 99999999999999863
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.87 E-value=0.79 Score=43.02 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044988 217 NVVSWTTMISGCAQNGKSRQALSLFNEMRRA 247 (538)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 247 (538)
+--.+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445678888888899999999999999875
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.082 Score=48.93 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
...+..+..++.+.+++..|++..++. ++..|++..+.. .-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kv-Le~~~~N~KALy-RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKV-LELDPNNVKALY-RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHH-HhcCCCchhHHH-HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345667777899999999999999999 999999999888 8899999999999999999999973
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=1.1 Score=38.74 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=99.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhH-HHHHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARV--GLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSL-NNALIH 300 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 300 (538)
....+...|++.+|...|+.+...-. +--......+..++.+.|+++.|...++.+.+. .|.+... +...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcchhhHHHHH
Confidence 34455667777777777777775421 112233445666667777777777777777665 3332221 111111
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHH
Q 044988 301 MYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIE 380 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 380 (538)
+.+.... ....+ ... ...+...+|...|..++.-+-...-..+|...+..+.... ..
T Consensus 86 g~~~~~~---~~~~~--~~~-------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-----a~ 142 (203)
T PF13525_consen 86 GLSYYKQ---IPGIL--RSD-------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-----AE 142 (203)
T ss_dssp HHHHHHH---HHHHH---TT----------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHh---Cccch--hcc-------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-----HH
Confidence 1111110 11111 111 1122334555778888888888888888888777776431 12
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIHNNAELAS 431 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~ 431 (538)
.--.+..-|.+.|.+..|..-++.+. .-|+ ....-.++.++.+.|..+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22346778999999999998888874 2244 245567788899999888544
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.17 Score=39.46 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHH
Q 044988 248 RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYA 303 (538)
Q Consensus 248 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (538)
...|+..+..+++.+++..+++..|.++.+.+.+.. +++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y---~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY---PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHH
Confidence 356777777778888777788888877777777663 35666677766665443
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.70 E-value=0.042 Score=44.57 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-----hCCCCchhHH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLA-----SGYCSNVFIR 156 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 156 (538)
....++..+...|+++.|..+.+.+.... +.|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556677788999999999999998764 45777999999999999999999999888753 5888876653
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.55 E-value=2 Score=45.84 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcc
Q 044988 249 VGLDQVALVAALSAC----AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTV 324 (538)
Q Consensus 249 ~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 324 (538)
..|+...+..+..+| .....++.|.-.|...-+. .--+.+|..+|+|.+|..+-.++..+-..
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~~de 997 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEGKDE 997 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCCHHH
Confidence 356666666655554 3456667776666655443 34567778888888888888877664333
Q ss_pred hH---HHHHHHHHhcCCccHHHHH-------HHHHHHHhcccCcHHHHHHHHHH
Q 044988 325 SW---TSMITGFAKQGYAQEALLT-------FLGVLSACSHGGFVDEGRQFFEC 368 (538)
Q Consensus 325 ~~---~~li~~~~~~~~~~~a~~~-------~~~ll~~~~~~~~~~~a~~~~~~ 368 (538)
.. ..|+..+...++.-+|-.. ....+..+++...+++|..+-..
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHh
Confidence 22 5566777777777766511 22233344445555555555443
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.17 Score=44.44 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=45.8
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHH
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALL 344 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 344 (538)
+.|++..|...|...++....+...++..+| |..++...|++++|..+|..+.+ ..++..+|-.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k--------------~~P~s~KApd 216 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVK--------------DYPKSPKAPD 216 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHH--------------hCCCCCCChH
Confidence 3444555555555555543333344444444 66666666666666666655543 1111122222
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
.+..+..+..+.|+.++|..+|+++.++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3333333444444555666666666555
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.37 E-value=0.065 Score=37.81 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
..++..+..+|...|++++|.+.+++.
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556677888888888888888888764
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.22 E-value=1.1 Score=43.63 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=91.2
Q ss_pred HHHhcCCCchHHHHHHH--HhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 91 RGHARSETPEKSVYLYK--QMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
....-.++++.+.+... ++.. .+ ...-.+.+++.+-+.|..+.|+++..+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33455677777766664 2221 11 24457788888888888888887743321 22345567777
Q ss_pred CCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 169 ECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
++.|.++.++.. +...|..|.....++|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 334 ---L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 ---LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp ---HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888877776665 555788888888888888888888877654 5556666677777777777666666554
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHS 277 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 277 (538)
-++..+.++.-.|++++..+++.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 13444555555666666555443
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.21 E-value=2.4 Score=38.71 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=88.9
Q ss_pred hcCCCchHHHHHHHHhHhCC--CCCCcc------hHHHHHHHHHccCCcHHHHHHHHHHHHh--------CCCCc-----
Q 044988 94 ARSETPEKSVYLYKQMIDKE--TEPDEY------TYSFLLSVCARCGLFREGEQVHGRVLAS--------GYCSN----- 152 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~----- 152 (538)
.++|+.+.|..++.+....- ..|+.. .|+.-...+.+..+++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45666677777666665422 122211 2333333333322666666665555443 11222
Q ss_pred hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHccCCC-C--ChHHHHHHHH
Q 044988 153 VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--RS-VVSWNSLLKGYVKRGDIDGAWKIFDEMPH-R--NVVSWTTMIS 226 (538)
Q Consensus 153 ~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~ 226 (538)
..+...++.+|...+.....++|.++++.+.. ++ +..+-.-++.+.+.++.+.+.+.+.+|.. . ....+...+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 24567777777777775556666666666643 23 44555556666667888888888888764 1 2334555555
Q ss_pred HHHH--cCCHHHHHHHHHHHHHCCCCCCHH
Q 044988 227 GCAQ--NGKSRQALSLFNEMRRARVGLDQV 254 (538)
Q Consensus 227 ~~~~--~~~~~~a~~~~~~m~~~g~~p~~~ 254 (538)
.+-. ......|...+..+....+.|...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 4422 234456777777776655565553
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.20 E-value=0.13 Score=48.86 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH----HHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI----EHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
..+..+..+|...|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.+++..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888888999999999999999998854 6763 358899999999999999999998875
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.15 E-value=1.3 Score=40.49 Aligned_cols=202 Identities=9% Similarity=0.049 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHcc-------CCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC---CHHH
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDE-------MPHR--NVVSWTTMISGCAQNGKSRQALSLFNEMRRA-RVGL---DQVA 255 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~-------m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~ 255 (538)
++..+..+.+..|.+++++..--. ..+. -...|-.+..++-+..++.+++.+-..-... |..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 444555555666665555432211 1111 1123444455555555555555544433321 2222 1122
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhccCCC-CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-------CCcch-H
Q 044988 256 LVAALSACAEIGDLKLGKWIHSYVEENFSVGR-EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-------RNTVS-W 326 (538)
Q Consensus 256 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~~-~ 326 (538)
..++-.++...+.++++.+.|+...+.....+ ......++..|...|.+..++++|.-+..+..+ .|... |
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 33344455555566666666655555422211 122334455566666666666555444333221 11110 1
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh---cCCCcc-HHHHHHHHHHhhhcCChHHHHHHH
Q 044988 327 TSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN---WGIKPR-IEHYGCMVDLFSRAGLMDEAFSLV 402 (538)
Q Consensus 327 ~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 402 (538)
.. .....+..++...|.+..|.+.-++..+. .|-.|. ......+.+.|...|+.+.|+.-|
T Consensus 205 r~---------------~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 205 RA---------------MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HH---------------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 10 12223334445555665565555554332 133332 445667888899999999988888
Q ss_pred HhC
Q 044988 403 QNM 405 (538)
Q Consensus 403 ~~~ 405 (538)
+..
T Consensus 270 e~A 272 (518)
T KOG1941|consen 270 EQA 272 (518)
T ss_pred HHH
Confidence 754
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.13 E-value=2.8 Score=38.99 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=140.7
Q ss_pred hcCCCCChhHHHHHhhcCCC-CCch--hHHHHHHHHHhcCCHHHHHHHHccCCC--CC-hHHHHHHHHHHHHcCCHHHHH
Q 044988 165 MSGGECGVGCARLLFDDMPA-RSVV--SWNSLLKGYVKRGDIDGAWKIFDEMPH--RN-VVSWTTMISGCAQNGKSRQAL 238 (538)
Q Consensus 165 ~~g~~~~~~~a~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~ 238 (538)
-.|+ .+.|.+-|+.|.. |.+. -...|.-..-+.|+.+.|...-++.-. |. .-.+...+...|..|+++.|+
T Consensus 132 ~eG~---~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGD---YEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCc---hHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 3455 6666666666653 2111 111122223456667776666655432 22 235677788888888888888
Q ss_pred HHHHHHHHC-CCCCCHHH--HHHHHHHHH---ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 239 SLFNEMRRA-RVGLDQVA--LVAALSACA---EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 239 ~~~~~m~~~-g~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
++++.-+.. -+.++..- -..|+.+-. -..+...|...-.+..+. .|..+..-..-...+.+.|+..++-
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-----~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-----APDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCccchHHHHHHHHHHhccchhhhh
Confidence 888876653 34444332 222333221 123455666655555554 3333333345677888999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhh
Q 044988 313 GVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSR 391 (538)
Q Consensus 313 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 391 (538)
.+++.+-+..+..--..+..+.+.|+... .-++...+.-.++|| ..+...+..+-..
T Consensus 284 ~ilE~aWK~ePHP~ia~lY~~ar~gdta~----------------------dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 284 KILETAWKAEPHPDIALLYVRARSGDTAL----------------------DRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred hHHHHHHhcCCChHHHHHHHHhcCCCcHH----------------------HHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 99998876444333333334444453322 222222222234554 5666677777778
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHc
Q 044988 392 AGLMDEAFSLVQNM-PMKPNDAVLGSLLLG-CRIHNNAELASQVAQKL 437 (538)
Q Consensus 392 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~ 437 (538)
.|++..|..--+.. ...|....|..|.+. -...||-.++...+-+.
T Consensus 342 a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 88888777665554 246777777777776 45558888888888887
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=95.07 E-value=1.2 Score=42.70 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhh---------cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 044988 358 FVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSR---------AGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHN 425 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 425 (538)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++.. -.-|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 567778888887733244665 4455444443322 223445566655543 3345666666666667777
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+++.|...|+++ ..+.|+...+|. ..+..+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA-~~L~Pn~A~~~~-~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQA-KIHSTDIASLYY-YRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHH-hhcCCccHHHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 789999999998 888999888888 888888889999999988888544
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.4 Score=35.24 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHc
Q 044988 87 NQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCAR 130 (538)
Q Consensus 87 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 130 (538)
..++..+...+.+......++.+...+ ..+...++.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344444444445555555555554443 2344444455554443
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.04 E-value=0.36 Score=37.62 Aligned_cols=41 Identities=7% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDL 388 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 388 (538)
.++.+|+..|++..|.++.+...+.|+++.+..+|..|++=
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33344444458888999999999999988888899988863
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.88 E-value=0.22 Score=43.67 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=83.0
Q ss_pred hHHHHHHhcCC--CCCcchHHHHHHHHhcC-----CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccC---------
Q 044988 69 INAHKVFEKTE--NPSTAIWNQMIRGHARS-----ETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCG--------- 132 (538)
Q Consensus 69 ~~a~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------- 132 (538)
-..+..|.... +.|-.+|-..+..+... +.++=....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34455666666 56777888888777543 556666777888999999999999999998765432
Q ss_pred -------CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 133 -------LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 133 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
+-+-+.+++++|...|+.||..+-..|++++.+.+-+ ..+..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p--~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP--TKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc--HHHHHHHHHhhh
Confidence 2345788999999999999999999999999888761 344444444443
No 243
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=94.83 E-value=0.029 Score=42.97 Aligned_cols=44 Identities=39% Similarity=0.763 Sum_probs=35.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccCCCC
Q 044988 483 GQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGYKPDISELFLGIEE 538 (538)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~~p~~~~~~~~~~~ 538 (538)
+++|+.+ +.|++++..||+. ++..+++..|+.|+...+.||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 45 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDE 45 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchh
Confidence 5788755 8999999999998 344567788999999999887653
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=0.19 Score=44.15 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc---cHH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-------MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA---GYL 450 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~---~~~ 450 (538)
.|+.-++. .+.|++.+|...|.... ..||..-| |..++...|+++.|..+|..+ ..-.|+.+. .+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~-~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARV-VKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHH-HHhCCCCCCChHHHH
Confidence 45544443 33455666666665542 23444444 555566666666666666666 444444443 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 451 ALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 451 ~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
-|+.+..+.|+.++|..+|+++.+
T Consensus 220 -Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 -KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred -HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 245
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=11 Score=43.83 Aligned_cols=301 Identities=12% Similarity=0.039 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCCCChhHHHHHhhcCC----CC--CchhHHHHHHHHHhcCCHHHHHHHHcc-CCCCChHHHHHHHHHHHH
Q 044988 158 NLMNLYLMSGGECGVGCARLLFDDMP----AR--SVVSWNSLLKGYVKRGDIDGAWKIFDE-MPHRNVVSWTTMISGCAQ 230 (538)
Q Consensus 158 ~l~~~~~~~g~~~~~~~a~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~ 230 (538)
.+..+-.+++. +..|...+++-. +. ...-|..+...|+..+++|...-+... ...|+. + .-|.....
T Consensus 1388 tLa~aSfrc~~---y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKA---YARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHh
Confidence 45556667777 888888887732 11 122333444477788887777777663 333332 2 33444566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHH-HHHHHHHHhCCCH
Q 044988 231 NGKSRQALSLFNEMRRARVGLD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLN-NALIHMYASCGEI 308 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 308 (538)
.|++..|...|+.+.+. .|+ ..+++-++......+.++......+..... .+.....+ +.=+.+-.+.+++
T Consensus 1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-----~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-----RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-----cCHHHHHHHHHHHHHHhhhcch
Confidence 79999999999999875 344 667777777777777877777666655554 33333333 3334444677777
Q ss_pred HHHHHHHHhcCCCCcchHHHH--HHHHHhcCCccHHH---------HHHHHHHHHhcccCcHHHHHHHHHHh--------
Q 044988 309 EEAYGVFRKMQRRNTVSWTSM--ITGFAKQGYAQEAL---------LTFLGVLSACSHGGFVDEGRQFFECM-------- 369 (538)
Q Consensus 309 ~~a~~~~~~m~~~~~~~~~~l--i~~~~~~~~~~~a~---------~~~~~ll~~~~~~~~~~~a~~~~~~~-------- 369 (538)
+.....+. ..+..+|... +..+.+..+-+.-. ..+..-+.+|+..|.+..+.++.-++
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 77777665 3444444443 22222222222111 11222234444444433333332221
Q ss_pred --hhhcCCCccHH------HHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 044988 370 --NQNWGIKPRIE------HYGCMVDLFSRAGLMDEAFSLVQNM----PMKPN-----DAVLGSLLLGCRIHNNAELASQ 432 (538)
Q Consensus 370 --~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~A~~ 432 (538)
....++.++.. -|..-+..-....+..+-+--+++. ...|+ ...|-...+.+..+|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11113333321 1111221111111122211111111 12222 5688888888999999999998
Q ss_pred HHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 433 VAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
.+-.+ .+..++ ..+. -.+..+...|+...|+.++++......
T Consensus 1692 all~A-~e~r~~--~i~~-E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNA-KESRLP--EIVL-ERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhh-hhcccc--hHHH-HHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88777 454433 3355 677899999999999999999986655
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=2.8 Score=37.51 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 044988 198 VKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKW 274 (538)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 274 (538)
...|++..|..+|+.... .+...--.++.+|...|+.+.|..++..+-..--.........-|..+.+.........
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 344555555555544332 22333444555555666666666665554322111111111122222222222222222
Q ss_pred HHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCccHH
Q 044988 275 IHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR-----NTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a 342 (538)
+...+. ..|.+...-..+...+...|+.+.|.+.+-.+.++ |...-..++..+...|..+.+
T Consensus 225 l~~~~a------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 225 LQRRLA------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 222222 24556666667888888888888888777665543 344555555555555544443
No 247
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.49 E-value=1.9 Score=35.41 Aligned_cols=125 Identities=8% Similarity=0.091 Sum_probs=60.9
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcC
Q 044988 103 VYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDM 182 (538)
Q Consensus 103 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~ 182 (538)
.+.+..+.+.+++|+...+..++..+.+.|.+.... .++..++-+|.......+-.+.... +....-+..++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~-~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQY-PPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccC-hHHHHHHHHHHHHh
Confidence 344555556777888888888888888887765543 3444444555433332222221111 11122333333333
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHH
Q 044988 183 PARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 236 (538)
. ..+..++..+...|++-+|++..+.....+......++.+..+.+|...
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 2 1234444555555555555555555433333333444444444444433
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.31 E-value=1.8 Score=33.44 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHccCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 193 LLKGYVKRGDIDGAWKIFDEMP---HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
-+..+.++|+-+.-.+++..+. ++++...-.+..+|.+.|+..++-+++.+..+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444455444444444432 2444444445555555555555555555554444
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.39 Score=42.18 Aligned_cols=104 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred ccccHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHH
Q 044988 16 KALTTRQIFSLLQ-----IRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMI 90 (538)
Q Consensus 16 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 90 (538)
+-.+|-..+..+. +.++++.....+..|.+.|+..|..+|+.|++.+-+..-... . .+....
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--n-----------vfQ~~F 132 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--N-----------VFQKVF 132 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--H-----------HHHHHH
Confidence 3444544444443 235667777778888888888888889888887765432111 1 111111
Q ss_pred HHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCc
Q 044988 91 RGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLF 134 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 134 (538)
--|-+ +-+=+++++++|...|+.||..+-..|+.++.+.+..
T Consensus 133 ~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11211 2345789999999999999999999999999887753
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.29 E-value=4.3 Score=39.70 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=104.5
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHH
Q 044988 126 SVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDG 205 (538)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (538)
+...-.++++.+.++.+.-.-.. ..+..-.+.++..+-+.|. .+.|+.+...- ..-.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~---~e~AL~~~~D~--------~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGY---PELALQFVTDP--------DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT----HHHHHHHSS-H--------HHHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCC---HHHHHhhcCCh--------HHHhHHHHhcCCHHH
Confidence 34456678888766654111110 1124457888899999999 99998876532 234556678999999
Q ss_pred HHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccC
Q 044988 206 AWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSV 285 (538)
Q Consensus 206 A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 285 (538)
|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+...++.+.....
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~--- 402 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER--- 402 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT---
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc---
Confidence 999988766 566999999999999999999999988753 455666677788888877777776665
Q ss_pred CCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 286 GREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
+. ++....++.-.|+.++..+++.+-
T Consensus 403 -~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 -GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 22 234444555668888888877664
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.18 E-value=0.28 Score=44.64 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=66.8
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCC--Cc--cHHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHHHH---
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGI--KP--RIEHYGCMVDLFSRAGLMDEAFSLVQNM-------PMKPNDAVLG--- 415 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~--- 415 (538)
..++.-.+.++++++.|+...+--.- .| ...++-.|...|.+..++++|.-...+. .++.-..-|.
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 33444445566666666654432111 11 2456777777788877777765444333 2221122222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHch-h----ccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHH
Q 044988 416 --SLLLGCRIHNNAELASQVAQKLV-A----EIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 416 --~l~~~~~~~~~~~~A~~~~~~~~-~----~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 473 (538)
.+.-++...|..-.|.+..++.. . +-.|-...... .++++|-..|+.+.|..-|+..
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~-~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL-CFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHhcccHhHHHHHHHHH
Confidence 23335677777777777777664 2 22222222233 6778888888877777666543
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.17 E-value=1.1 Score=35.43 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP--MK--P-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~--~~--p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.....+.|++++|.+.|+.+. .. | ....--.++.++.+.++++.|...+++. .++.|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF-irLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF-IRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCCC
Confidence 344557899999999999885 11 1 1344556788899999999999999999 889998875
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=1.2 Score=39.77 Aligned_cols=119 Identities=12% Similarity=0.128 Sum_probs=85.1
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 044988 354 SHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGS---LLLGCRIHNNAEL 429 (538)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~ 429 (538)
...|+...|...|+..... .| +...--.|+.+|...|+.+.|..++..++..-...-+.. -+..+.+.....+
T Consensus 145 ~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556888888999888765 34 466777899999999999999999999974333222222 2333444444444
Q ss_pred HHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 430 ASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
...+-++ ..-.|++...-. .++..+...|+.++|.+.+=.+..++.
T Consensus 222 ~~~l~~~--~aadPdd~~aa~-~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 222 IQDLQRR--LAADPDDVEAAL-ALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHH--HHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4444444 355798888677 899999999999999998888776533
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.85 E-value=3.6 Score=39.74 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCC--HHHHHHHHHHHHhc
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPM--KPN--DAVLGSLLLGCRIH 424 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~~~~~~ 424 (538)
+..++-+.|+.++|.+.++++.+.+...-+..+...|+.++...+.+.++..++.+-.. -|. ...|+..+-.+...
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 44455677899999999999987632222355778899999999999999999988741 233 34555554433333
Q ss_pred CC---------------HHHHHHHHHHchhccCCCCcc
Q 044988 425 NN---------------AELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 425 ~~---------------~~~A~~~~~~~~~~~~p~~~~ 447 (538)
++ -..|.+.+.++ .+.+|..+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RA-vefNPHVp~ 381 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRA-VEFNPHVPK 381 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHH-HHhCCCCch
Confidence 32 13456778887 788888776
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.84 E-value=2.7 Score=41.68 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=95.3
Q ss_pred hHHHHHHHhcCCCCChhHHHHHhhcCCCC-Cc---------hhHHHHHHHHHh----cCCHHHHHHHHccCCC--CChHH
Q 044988 157 TNLMNLYLMSGGECGVGCARLLFDDMPAR-SV---------VSWNSLLKGYVK----RGDIDGAWKIFDEMPH--RNVVS 220 (538)
Q Consensus 157 ~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-~~---------~~~~~li~~~~~----~g~~~~A~~~~~~m~~--~~~~~ 220 (538)
..++....=.|+ -+..++++.+..+. +. -.|...+..++. ....+.|.++++.+.+ |+...
T Consensus 192 ~kll~~vGF~gd---R~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGD---RELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL 268 (468)
T ss_pred HHHHhhcCcCCc---HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH
Confidence 345555555566 66666666654432 11 234444443333 4567888888888876 77776
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 221 WTTMI-SGCAQNGKSRQALSLFNEMRRAR---VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 221 ~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
|...- +.+...|++++|++.|++..... .+.....+--+.-++.-..++++|...+..+.+. ...+..+|.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~ 343 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYA 343 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHH
Confidence 65543 55667789999999998765311 1122334445555667788888888888888876 233333332
Q ss_pred -HHHHHHHhCCCH-------HHHHHHHHhcC
Q 044988 297 -ALIHMYASCGEI-------EEAYGVFRKMQ 319 (538)
Q Consensus 297 -~l~~~~~~~g~~-------~~a~~~~~~m~ 319 (538)
....++...|+. ++|.++|.++.
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 334445567777 77888887765
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.80 E-value=0.95 Score=34.81 Aligned_cols=54 Identities=26% Similarity=0.121 Sum_probs=40.6
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
+++..|+++.|.+.|...... .|...+.||.-..++.-.|+.++|.+-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 345667777777777777775 677778888888888888888888887777654
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.75 E-value=6.2 Score=37.24 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC
Q 044988 410 NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
|---+.+++.++.-.|+.++|.+..++| ....|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~-~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKA-FKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH-hhcCCcc
Confidence 3444567788888889999999999998 6666654
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.63 E-value=8.2 Score=38.24 Aligned_cols=400 Identities=13% Similarity=0.093 Sum_probs=196.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHh-c
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKN-YILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHA-R 95 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~-~ 95 (538)
+.|+.--....+...+..++..++.. .|-. .-|..-...-.+.|..+.+.++|++-. +.+...|...+..++ .
T Consensus 49 t~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~ 126 (577)
T KOG1258|consen 49 TTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNN 126 (577)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 33444333444455556666666543 2333 244555555556778888888887755 245555665555443 4
Q ss_pred CCCchHHHHHHHHhHhC-CCC-CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCC---
Q 044988 96 SETPEKSVYLYKQMIDK-ETE-PDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGEC--- 170 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--- 170 (538)
.|+.+...+.|+..... |.. -+...|...|..-..++++.....+++++++....-=...|..... +.......
T Consensus 127 ~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~-~l~~~~~~~l~ 205 (577)
T KOG1258|consen 127 NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ-LLNQNEEKILL 205 (577)
T ss_pred CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH-HHhcCChhhhc
Confidence 56777777777777653 322 2444667777777777778888888887776421110111111000 00110000
Q ss_pred ChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCH-HHHHHHHccCCCCChH---HHHHH-------HHHHHHcCCHHHHHH
Q 044988 171 GVGCARLLFDDMPARSVVSWNSLLKGYVKRGDI-DGAWKIFDEMPHRNVV---SWTTM-------ISGCAQNGKSRQALS 239 (538)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~---~~~~l-------i~~~~~~~~~~~a~~ 239 (538)
..+.+.++-...... ......+.. +.-....+....|... ..+.+ -..+-......+...
T Consensus 206 ~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 206 SIDELIQLRSDVAER---------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred CHHHHHHHhhhHHhh---------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 011111110000000 000000111 1111111111111110 01111 111222222233333
Q ss_pred HHHHHHHC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 240 LFNEMRRA---RVGL----DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 240 ~~~~m~~~---g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
.|+.-.+. .++| +..+|..-+.--.+.|+.+.+.-.++.+.-- ...-..+|-..+......|+.+-|.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-----cA~Y~efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-----CALYDEFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-----HhhhHHHHHHHHHHHHHcCchhHHH
Confidence 33332221 1222 3445555555556777777777777666543 4444455555666666667777777
Q ss_pred HHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH-HHHHHHHHH
Q 044988 313 GVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI-EHYGCMVDL 388 (538)
Q Consensus 313 ~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~ 388 (538)
.++....+ ++......+=..+ +-..|+...|..+++.+...+ |+. ..-..-+..
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~f-------------------~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEARF-------------------EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINW 409 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHH-------------------HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhH
Confidence 77765543 2222111111111 123467888888888887752 553 333333455
Q ss_pred hhhcCChHHHH---HHHHhCC-CCCCHHHHHHH----HH-HHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 389 FSRAGLMDEAF---SLVQNMP-MKPNDAVLGSL----LL-GCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 389 ~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l----~~-~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
..+.|..+.+. +++.... .+-+..+...+ .+ .+.-.++.+.|..++.++ ....|+....|. .+++....
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~-~~~~~~~k~~~~-~~~~~~~~ 487 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEA-NDILPDCKVLYL-ELIRFELI 487 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hhcCCccHHHHH-HHHHHHHh
Confidence 56778877777 5554442 12222222222 22 245578899999999999 999999988787 66666655
Q ss_pred cC
Q 044988 460 AK 461 (538)
Q Consensus 460 ~g 461 (538)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 54
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.55 E-value=0.66 Score=35.63 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=53.0
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCc-c---cHHHHHHHHHHhcC
Q 044988 388 LFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQA-A---GYLALVANVYAAAK 461 (538)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~-~---~~~~~l~~~~~~~g 461 (538)
+++..|+++.|++.|.+.. .+.....||.-..++.-.|+.++|+.-+++. .++.-+.. + .|+ .-+..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A-leLag~~trtacqa~v-QRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKA-LELAGDQTRTACQAFV-QRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHH-HHhcCccchHHHHHHH-HHHHHHHHhC
Confidence 4556677777777776542 2234566666667777777777777777766 33332221 1 244 4455666677
Q ss_pred ChHHHHHHHHHHHhCCC
Q 044988 462 RWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 462 ~~~~A~~~~~~m~~~~~ 478 (538)
+-+.|..=|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777776665544
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.46 E-value=0.22 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.107 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
.|..+...+...|++++|++.+++. ..+.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a-l~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA-LELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HHHCcC
Confidence 3445555566666666666666666 555554
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=93.26 E-value=3.8 Score=39.42 Aligned_cols=111 Identities=9% Similarity=0.057 Sum_probs=82.6
Q ss_pred CcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQV 433 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 433 (538)
.+..+|.+.-++..+. .| |......+..++.-.|+++.|..+|++.. ..|| ..+|......+...|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDI---TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567777777777754 44 67888888888888899999999999985 6677 56666666778889999999999
Q ss_pred HHHchhccCCCCcccHHH-HHHHHHHhcCChHHHHHHHHH
Q 044988 434 AQKLVAEIDPEQAAGYLA-LVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 472 (538)
+++. .++.|.....-.. ..++.|.. ...++|++++-+
T Consensus 395 i~~a-lrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKS-LQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHH-hccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 9999 8999988763331 22234444 456777777644
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.25 E-value=6.5 Score=35.92 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=72.7
Q ss_pred hcCCHHHHHHHHccCCC------CCh------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHC--------CCCCCH----
Q 044988 199 KRGDIDGAWKIFDEMPH------RNV------VSWTTMISGCAQNG-KSRQALSLFNEMRRA--------RVGLDQ---- 253 (538)
Q Consensus 199 ~~g~~~~A~~~~~~m~~------~~~------~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~~---- 253 (538)
+.|+.+.|...+.+... |+. ..|+.-... .+.+ +++.|..++++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45666666666655432 222 123333333 3444 777777777665432 233333
Q ss_pred -HHHHHHHHHHHccCChHH---HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchH
Q 044988 254 -VALVAALSACAEIGDLKL---GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSW 326 (538)
Q Consensus 254 -~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~ 326 (538)
.++..++.++...+..+. |..+.+.+... .+..+.++-.-+..+.+.++.+.+.+++.+|... ....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 356667777777776554 44555555443 4444455545567777788888888888888752 23444
Q ss_pred HHHHHHH
Q 044988 327 TSMITGF 333 (538)
Q Consensus 327 ~~li~~~ 333 (538)
..++..+
T Consensus 159 ~~~l~~i 165 (278)
T PF08631_consen 159 DSILHHI 165 (278)
T ss_pred HHHHHHH
Confidence 4444444
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.20 E-value=0.19 Score=28.46 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
+|..+...+...|++++|+..++++ .++.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA-LELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH-HHHCcC
Confidence 4555666666666666666666666 666654
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.88 E-value=8.8 Score=36.44 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHHHhc----CCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc---cHHHHHHHHHHhhhcC
Q 044988 321 RNTVSWTSMITGFAKQ----GYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP---RIEHYGCMVDLFSRAG 393 (538)
Q Consensus 321 ~~~~~~~~li~~~~~~----~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g 393 (538)
++...|..++..-... ....+...++..+...+.+.|.++.|...+..+... +..+ ++.+.-.-+..+...|
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g 198 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQG 198 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcC
Confidence 4555555555422221 123444477888888888999999999998888753 2111 2334445566666788
Q ss_pred ChHHHHHHHHhC
Q 044988 394 LMDEAFSLVQNM 405 (538)
Q Consensus 394 ~~~~A~~~~~~~ 405 (538)
+..+|+..++..
T Consensus 199 ~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 199 EQEEAIQKLREL 210 (352)
T ss_pred CHHHHHHHHHHH
Confidence 888888877654
No 265
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.69 E-value=0.23 Score=39.99 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHG 142 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 142 (538)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555556666666666666654434445555566666666655555555443
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.47 E-value=0.66 Score=41.55 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
++..++..+...|+++.+.+.++++ ....|-+...|. .++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~L-i~~dp~~E~~~~-~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERL-IELDPYDEPAYL-RLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-HhcCccchHHHH-HHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445566666677777777777777 777777777677 777777777777777777777654
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=13 Score=38.47 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNVV---SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEI 266 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 266 (538)
...-+..+.+...++.|..+-+.-..+... ........+.+.|++++|...|-+-... +.|. .+|.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 344566667777778888777664432222 2233345566788888888888765432 2332 234444444
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcc--hHHHHHHHHHhcCCccHHH
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTV--SWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~ 343 (538)
..+..-..+++.+.+. +....-++ ..|+.+|.+.++.+.-.+..+.-.+ +.+ -....+..+.+.+-.++|.
T Consensus 411 q~IknLt~YLe~L~~~----gla~~dht-tlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKK----GLANSDHT-TLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHHHHHc----ccccchhH-HHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHH
Confidence 5555555566666665 55444444 4788888888888888888877652 222 1334455555555555544
No 268
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.17 E-value=5.2 Score=36.72 Aligned_cols=134 Identities=14% Similarity=0.191 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc--c----CChhHHHHHHhcCCC-------CCcchHHHHHHHHhcCCCc
Q 044988 33 TKTLFQIHSQIIINGFSQKNYILAKLLAFYVT--S----GYLINAHKVFEKTEN-------PSTAIWNQMIRGHARSETP 99 (538)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 99 (538)
+.....+++.+.+.|+..+..++-+..-.... . .....|..+|+.|++ ++-.++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567899999999999888777664444333 2 245678889998884 344456666544 33333
Q ss_pred ----hHHHHHHHHhHhCCCCCCcc--hHHHHHHHHHccCC--cHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 100 ----EKSVYLYKQMIDKETEPDEY--TYSFLLSVCARCGL--FREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 100 ----~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+.+..+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 56777888888878766443 33334433322222 44778889999999988888777765554444444
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.52 Score=42.13 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=75.6
Q ss_pred HhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC-------CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCC
Q 044988 45 INGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN-------PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPD 117 (538)
Q Consensus 45 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 117 (538)
..|.+.+..+...++..-....++++++..+-++.+ |+... ...++.+. .-++++++.++..=.+.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 456666777777777777778888888888766652 22221 22233322 3367899999888888999999
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 044988 118 EYTYSFLLSVCARCGLFREGEQVHGRVLASG 148 (538)
Q Consensus 118 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 148 (538)
..+++.+|+.+.+.+++..|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888877664
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=2.1 Score=38.90 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=37.4
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCccHHHHH----HHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKPRIEHYG----CMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHN 425 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 425 (538)
+|...|+...-...++++...+ .||...|. .+.-++..+|-+++|.+.-++.. .+.|.-...++...+...|
T Consensus 146 a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~ 223 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNG 223 (491)
T ss_pred HHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence 4444555555555555544332 23322221 22223334555555555555442 1223333344444455555
Q ss_pred CHHHHHHHHHHc
Q 044988 426 NAELASQVAQKL 437 (538)
Q Consensus 426 ~~~~A~~~~~~~ 437 (538)
+..++.+.+.+-
T Consensus 224 r~Keg~eFM~~t 235 (491)
T KOG2610|consen 224 RHKEGKEFMYKT 235 (491)
T ss_pred hhhhHHHHHHhc
Confidence 555555555544
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.78 E-value=0.33 Score=27.97 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 449 YLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 449 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+. .|+.+|.+.|++++|++++++..
T Consensus 2 l~-~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LN-NLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HH-HHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45 78889999999999999998844
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.71 E-value=0.78 Score=27.87 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 222 TTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
..+...|...|++++|.++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.70 E-value=0.8 Score=36.29 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=26.0
Q ss_pred cCChHHHHHHHHhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 392 AGLMDEAFSLVQNMP-MKPNDAVLGSL-LLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 392 ~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
.++.+++..+++.|. ..|+..-...+ ...+...|++++|.++|+.. .+..|.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l-~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILREL-LSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhh-hccCCC
Confidence 556666666666553 34443322222 22245566666666666665 443333
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.62 E-value=5.8 Score=32.48 Aligned_cols=120 Identities=9% Similarity=0.030 Sum_probs=81.2
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHH---HH--HHHHhcCC
Q 044988 354 SHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGS---LL--LGCRIHNN 426 (538)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~---l~--~~~~~~~~ 426 (538)
.+.+..++|+.-|..+.+. |...- +-............|+...|...|+++. ..|-+....- |- ..+...|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3445778888888888765 44321 2222333445678899999999999985 2222222222 22 23578889
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
++....-.+-+.....|-..+.-. .|+-+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArE-ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSARE-ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHH-HHhHHHHhccchHHHHHHHHHHHc
Confidence 999888888774445555555445 788888899999999999999875
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.49 E-value=0.86 Score=36.81 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=43.2
Q ss_pred hhcCChHHHHHHHHhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCC
Q 044988 390 SRAGLMDEAFSLVQNMP-MKPNDAVLGSL-LLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKR 462 (538)
Q Consensus 390 ~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 462 (538)
.+.++.+++..++..+. .+|.......+ ...+...|++.+|.++|+.+ .+-.|..+..-- +++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l-~~~~~~~p~~kA-LlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL-EERAPGFPYAKA-LLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH-hccCCCChHHHH-HHHHHHHHcCC
Confidence 45677788888887774 55665544433 23367778888888888887 666665554222 44444444443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.43 E-value=0.55 Score=27.04 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMR 245 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (538)
+|+.|...|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777778888888888877744
No 277
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.32 E-value=20 Score=37.18 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHhhhhcCCCcc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQV 433 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~ 433 (538)
.+.+.|...+.......+..+. ..++..+.......+...+|...++... ...+.....--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 3567888888877555344443 2334445444444433667777777653 223444455556666688899888888
Q ss_pred HHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 434 AQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+..| ............ -++.++...|+.++|...|+++.
T Consensus 335 i~~L-~~~~~~~~rw~Y-W~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARL-PMEAKEKDEWRY-WQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhc-CHhhccCHhhHH-HHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888 333334445456 78888888899999999888874
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.16 E-value=0.33 Score=27.55 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.0
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
.|.+...|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 7888888999999999999998886
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.84 E-value=3.1 Score=34.89 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCc---chhH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPV---LVSL 294 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~ 294 (538)
.+..+...|++.|+.+.|++.|.++.+....|. ...+..+|....-.+++..+......+......++... ...+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 577788888888888888888888877654443 33466777777788888888888777776644332211 1122
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 295 NNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
+..| .+...+++..|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2335678888888887765
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.66 E-value=19 Score=35.80 Aligned_cols=83 Identities=12% Similarity=0.257 Sum_probs=64.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-ccCChhHHHHHHhcCCC------CCcchHHHHHHHHhcCCCch
Q 044988 28 QIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYV-TSGYLINAHKVFEKTEN------PSTAIWNQMIRGHARSETPE 100 (538)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~ 100 (538)
.+.|..+.+..+|+.-++. ++.+...|...+.... ..|+.+.....|++... .+...|...|.--..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 4557778888889887764 5677778877776555 46788888888887663 35557888898888899999
Q ss_pred HHHHHHHHhHh
Q 044988 101 KSVYLYKQMID 111 (538)
Q Consensus 101 ~a~~~~~~m~~ 111 (538)
....+|++.++
T Consensus 169 ~v~~iyeRile 179 (577)
T KOG1258|consen 169 RVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 281
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.37 E-value=12 Score=32.98 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
+.+-|.+.|.+..|..-++.|.+.+.-.+ ....+-.+..+|.+.|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34556667778888888888887642222 13455667778888888888877766554
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=13 Score=32.45 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=7.3
Q ss_pred hcccCcHHHHHHHHHH
Q 044988 353 CSHGGFVDEGRQFFEC 368 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~ 368 (538)
+....++..|..+++.
T Consensus 200 ~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 3333444445555444
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=28 Score=36.21 Aligned_cols=215 Identities=12% Similarity=0.039 Sum_probs=137.4
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHH----HhC------------CCCChhHHHHHHHHHHccCChhHHHHHHhcC
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQII----ING------------FSQKNYILAKLLAFYVTSGYLINAHKVFEKT 78 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 78 (538)
.+..+.++++.++...+++-.-.-+++.+. ..+ ..........-++.+.+...++-|+.+.+.-
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 456677788888888887644433333333 323 1122345566778888888889998887655
Q ss_pred CCCCcchH----HHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh
Q 044988 79 ENPSTAIW----NQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVF 154 (538)
Q Consensus 79 ~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 154 (538)
.- +...- ..-.+-+.+.|++++|...|-+-... +.| ..+|.-|....++..-..+++.+.+.|+ .+..
T Consensus 361 ~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~d 432 (933)
T KOG2114|consen 361 HL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSD 432 (933)
T ss_pred CC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccch
Confidence 43 22222 22334456789999999988776643 233 3455666666667777788899999885 4555
Q ss_pred HHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCc-hhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCC
Q 044988 155 IRTNLMNLYLMSGGECGVGCARLLFDDMPARSV-VSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGK 233 (538)
Q Consensus 155 ~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 233 (538)
.-+.|+++|.+.++ .++..+..+....-.. .-....+..+.+.+-.+.|..+-.+... +......++ -..++
T Consensus 433 httlLLncYiKlkd---~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKD---VEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHN 505 (933)
T ss_pred hHHHHHHHHHHhcc---hHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcC
Confidence 66789999999999 8888877776662211 1234455566666666666665555433 333333333 34688
Q ss_pred HHHHHHHHHHH
Q 044988 234 SRQALSLFNEM 244 (538)
Q Consensus 234 ~~~a~~~~~~m 244 (538)
+++|++++..+
T Consensus 506 y~eAl~yi~sl 516 (933)
T KOG2114|consen 506 YEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcC
Confidence 99999988776
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.63 E-value=11 Score=31.53 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 291 LVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
-...+..+...|++.|+.+.|.+.|.++.+....+ ...+ ..+..++..+...+++..+.....+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-~~~i-------------d~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP-GHKI-------------DMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-HHHH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556788899999999999999999987643221 1111 233344444455556666555555544
Q ss_pred hhc--CCCcc----HHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 371 QNW--GIKPR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 371 ~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
... +-.++ ..+|..|. +...+++.+|-++|-...
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHH--HHHhchHHHHHHHHHccC
Confidence 321 11112 12222222 335678888888887664
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.59 E-value=8.7 Score=31.20 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCccHH-HHHHHHHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPRIE-HYGCMVDLFSRAGLMDEAFSLVQNMPMK-PNDAVLGSLLLGCRIH 424 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~ 424 (538)
.++..-...++.+.+..++..+... .|... .-..-...+...|++.+|..+|+++... |....-..|+..|...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3444555677999999999998744 67533 2233345577899999999999999644 3333334455445443
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.40 E-value=1.8 Score=38.90 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHh-----CCCCCCcchHHHHHH
Q 044988 55 LAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMID-----KETEPDEYTYSFLLS 126 (538)
Q Consensus 55 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~li~ 126 (538)
+..++..+...|+++.+.+.+++... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+......
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 34444455555555555555554442 2334555555555555555555555555543 244454444444333
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.16 E-value=28 Score=35.45 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=59.0
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHh
Q 044988 120 TYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVK 199 (538)
Q Consensus 120 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 199 (538)
.|+.+...++....++.|.+.|..--. ....+.++.+..+ +++.+.+-..+++ +......+..++..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~---f~~LE~la~~Lpe-~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL---FGELEVLARTLPE-DSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh---hhhHHHHHHhcCc-ccchHHHHHHHHHh
Confidence 444444445555555555554433211 1124445555555 5555444444443 44456667777778
Q ss_pred cCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044988 200 RGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 200 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 244 (538)
.|.-++|.+.|-+-..|.. .+..|...+++.+|.++-++.
T Consensus 865 vGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 8888888777776655543 334556666777776665544
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.82 E-value=12 Score=30.80 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhc--CCHHHHHHHHccCCC
Q 044988 138 EQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKR--GDIDGAWKIFDEMPH 215 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 215 (538)
.+.++.+.+.+++|+...+..+++.+.+.|+ +.....++.--.-+|.......+-.+... .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~---~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQ---FSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 3455666778899999999999999999999 88887777665555544443333222221 11344555555544
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEE 281 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 281 (538)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++.+.+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777788889999999888765322 122234566676677776666666666655
No 289
>PRK09687 putative lyase; Provisional
Probab=88.80 E-value=19 Score=32.94 Aligned_cols=80 Identities=3% Similarity=-0.090 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCc----hHHHHHHHHhHhCCCCCCcchHHHHH
Q 044988 50 QKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETP----EKSVYLYKQMIDKETEPDEYTYSFLL 125 (538)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~~~~~li 125 (538)
++..+....+..+...|..+-...+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 45556666666666666533333333323345555555555666666653 3456666555332 35555555555
Q ss_pred HHHHcc
Q 044988 126 SVCARC 131 (538)
Q Consensus 126 ~~~~~~ 131 (538)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 555443
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.57 E-value=0.88 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCC
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p 443 (538)
|..+...+...|++++|...|++. .++.|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a-~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA-LELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HhhCC
Confidence 344444455555555555555555 44444
No 291
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.51 E-value=1.4 Score=36.75 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=56.5
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKPN------DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK 461 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 461 (538)
+.+.|++++|..-|.... .-|. .+.|..-..+..+.+.++.|+.-..+. .++.|....+.. .-+.+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa-iel~pty~kAl~-RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA-IELNPTYEKALE-RRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh-HhcCchhHHHHH-HHHHHHHhhh
Confidence 456677777776666542 1121 223333334566777778888777777 778887776555 6667788888
Q ss_pred ChHHHHHHHHHHHhC
Q 044988 462 RWQDVAAVRQKMIKM 476 (538)
Q Consensus 462 ~~~~A~~~~~~m~~~ 476 (538)
++++|++=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888887764
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.47 E-value=15 Score=31.46 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA 297 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (538)
+.+||-+.--+...|+++.|.+.|+...+....-+-...+.-| ++.-.|++..|.+-+...-+. +...|....|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc---CCCChHHHHHHH
Confidence 3478888888888899999999999887744332222222222 223457788777665555553 122222233322
Q ss_pred HHHHHHhCCCHHHHHH-HHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc--C
Q 044988 298 LIHMYASCGEIEEAYG-VFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW--G 374 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~ 374 (538)
+. .+.-++.+|.. +.++..+.|..-|...|-.|.-..-.+++ +++.+...- +
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~----------------------l~~~~~a~a~~n 229 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEET----------------------LMERLKADATDN 229 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHH----------------------HHHHHHhhccch
Confidence 21 12234555554 44555555555555544443322211211 111111100 0
Q ss_pred ---CCccHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 375 ---IKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 375 ---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
-..=..||--|..-+...|+.++|..+|+-..
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 00113466677777777777777777776543
No 293
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=17 Score=31.61 Aligned_cols=117 Identities=12% Similarity=0.179 Sum_probs=60.8
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHhccc-CcHHHHHHHHHHhhhhcCCC-ccHHHHHHH---HHHhhhcCChHHHHHHHHh
Q 044988 330 ITGFAKQGYAQEALLTFLGVLSACSHG-GFVDEGRQFFECMNQNWGIK-PRIEHYGCM---VDLFSRAGLMDEAFSLVQN 404 (538)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l---~~~~~~~g~~~~A~~~~~~ 404 (538)
|..|...|++..|......+...|-.. .+++.|+..|+..-+-+... .+...-..+ .+--+..+++.+|+++|++
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566665554444555555433 56667777766654432211 122222222 2333456888999999988
Q ss_pred CC---CCCCHHHHH---HHHHH--HHhc-CCHHHHHHHHHHchhccCCCCcc
Q 044988 405 MP---MKPNDAVLG---SLLLG--CRIH-NNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 405 ~~---~~p~~~~~~---~l~~~--~~~~-~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+. ...+..-|. .++.+ |--. .+.-.+...+++- .++.|....
T Consensus 180 va~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky-~~~dP~F~d 230 (288)
T KOG1586|consen 180 VARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY-QELDPAFTD 230 (288)
T ss_pred HHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH-HhcCCcccc
Confidence 74 222222221 12222 2222 5666666677776 667777554
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=9.5 Score=37.83 Aligned_cols=147 Identities=20% Similarity=0.123 Sum_probs=94.1
Q ss_pred hCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHH---HHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHH
Q 044988 304 SCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTF---LGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIE 380 (538)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 380 (538)
-.|+++.|..++-.+.++ .-+.++.-+.+.|-.++|+..- ..-.....+.|+++.|.++..+.. +..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~-------s~~ 667 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEAN-------SEV 667 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhc-------chH
Confidence 346666666666655532 2344555566666666666110 011122235577777777765432 456
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhc
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAA 460 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 460 (538)
-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+-... .+....+.. |. +|...
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~-~~~g~~N~A-F~-----~~~l~ 734 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLA-KKQGKNNLA-FL-----AYFLS 734 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHH-HhhcccchH-HH-----HHHHc
Confidence 78889999999999999999888764 2566777777788877666666655 333444433 33 67889
Q ss_pred CChHHHHHHHHHH
Q 044988 461 KRWQDVAAVRQKM 473 (538)
Q Consensus 461 g~~~~A~~~~~~m 473 (538)
|+++++.+++.+-
T Consensus 735 g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 735 GDYEECLELLIST 747 (794)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999988764
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.79 E-value=1.5 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777765
No 296
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.74 E-value=12 Score=29.68 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 228 CAQNGKSRQALSLFNEMRRAR--VGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
..+.|++++|.+.|+.+...= -+-....-..++.++.+.++++.|...++.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344566666666666655431 0112233444555555555555555555555554
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.67 E-value=14 Score=30.32 Aligned_cols=133 Identities=8% Similarity=0.037 Sum_probs=72.8
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHH----
Q 044988 18 LTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQK-NYILAKLLAFYVTSGYLINAHKVFEKTEN--PSTAIWNQMI---- 90 (538)
Q Consensus 18 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li---- 90 (538)
..|..-+. +++.+..+.|..-|..+.+.|...= +-..-......+..|+...|...|+++-. +.+....-+.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33444333 3345566777777777777664421 22233344555667777777777776653 2222221111
Q ss_pred -HHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 044988 91 -RGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCS 151 (538)
Q Consensus 91 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 151 (538)
-.++.+|.++......+.+-..+.+.-...-..|.-+..+.|++..|.+.|..+......|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1235567777766666666544433333444455556667777777777777766543333
No 298
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.56 E-value=4 Score=26.04 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQEGY 525 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~~~ 525 (538)
.++-++.+.|++++|.+..+.+.+. .|...++...-..+.+.|++.|+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 5677899999999999999999873 44556666666667788888874
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.50 E-value=5.8 Score=38.44 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC--CcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE--QAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPP 482 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 482 (538)
..+-..+..++.+.|+.++|++.++++ .+..|. ...... .|+.+|...+++.++..++.+-.+...+++.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdL-lke~p~~~~l~Ire-nLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRE-NLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHH-HHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 334455677788899999999999999 655554 233345 7889999999999999999987654444443
No 300
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.34 E-value=8.8 Score=29.99 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHhhhcCCh---HHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 376 KPRIEHYGCMVDLFSRAGLM---DEAFSLVQNMP--MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.++..+-..+..++.+..+. .+.+.+++.+- ..|+ ..-..-|.-++.+.+++++++++.+.+ .+..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l-l~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL-LETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH-HhhCCCcHH
Confidence 34444444555555554432 23344444442 1122 112223333455556666666666655 555555544
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.20 E-value=18 Score=30.99 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=43.9
Q ss_pred ccCChhHHHHHHhcCC--CCC-cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHH--HHHccCCcHHHH
Q 044988 64 TSGYLINAHKVFEKTE--NPS-TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLS--VCARCGLFREGE 138 (538)
Q Consensus 64 ~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~~~~a~ 138 (538)
+.|-..-|+-=|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.+ |. .-|..+=+ ++--.|+++.|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhH
Confidence 3344444444443322 233 3467777777777888888888888777643 22 12222222 223346777776
Q ss_pred HHHHHHHHh
Q 044988 139 QVHGRVLAS 147 (538)
Q Consensus 139 ~~~~~~~~~ 147 (538)
+=+...-+.
T Consensus 154 ~d~~~fYQ~ 162 (297)
T COG4785 154 DDLLAFYQD 162 (297)
T ss_pred HHHHHHHhc
Confidence 665555544
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.02 E-value=17 Score=30.56 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSL-----LLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
+...+..+|++++|..-++.....|....+..+ .+.....|.+|.|+..++.. . .+.-......+-++++..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-~--~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI-K--EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-c--cccHHHHHHHHhhhHHHH
Confidence 456677889999999888876534544444444 34567888999999988876 2 122122122277889999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 044988 460 AKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~ 477 (538)
.|+-++|+.-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999888765
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.77 E-value=31 Score=33.24 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCC
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMP 214 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 214 (538)
..++..++....+.++...|.+.+.-+.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3467777777778888777777666544
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.62 E-value=7.3 Score=28.33 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
+.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++++.++..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45567777777777788899999999999999999999999999888765
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.52 E-value=0.54 Score=37.87 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=62.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchH
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEK 101 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 101 (538)
.++..+...+.+..+..+++.+.+.+...++...+.++..|++.++.+...++++.... .-...+++.|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 56777777888888889999999887777788999999999999888888888874332 333455666666666666
Q ss_pred HHHHHHHhH
Q 044988 102 SVYLYKQMI 110 (538)
Q Consensus 102 a~~~~~~m~ 110 (538)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666665543
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.52 E-value=6.9 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
+.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++..
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466777777777788999999999999999999999999999988887
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.23 E-value=5.5 Score=28.95 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=44.7
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHH
Q 044988 98 TPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNL 159 (538)
Q Consensus 98 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (538)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+... ..+...|..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~ 82 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYI 82 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHH
Confidence 334566667777777888999999999999999999999999999877442 2233344444
No 308
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.00 E-value=19 Score=33.17 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 234 SRQALSLFNEMRRARVGLDQVALVAALSACAE--IG----DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 234 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++....-..+.+..+ ..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~-a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPF-AALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhH-HHHHhc--cccc
Confidence 46677888899999999888887664443333 22 245678888888887332222223222 233222 3333
Q ss_pred H----HHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccC--cHHHHHHHHHHhhhhcCCCccHHH
Q 044988 308 I----EEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGG--FVDEGRQFFECMNQNWGIKPRIEH 381 (538)
Q Consensus 308 ~----~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~ 381 (538)
. +.++.+|+.+.+.+. ..|+ .+.....++..+.... ...++..+++.+.+. |+++....
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f-----------~kgn---~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~ 219 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGF-----------KKGN---DLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMH 219 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCC-----------CCCc---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCcccccc
Confidence 3 334444444433110 0000 0011111111111111 245777888888877 88887766
Q ss_pred HHHHHH
Q 044988 382 YGCMVD 387 (538)
Q Consensus 382 ~~~l~~ 387 (538)
|..+.-
T Consensus 220 yp~lGl 225 (297)
T PF13170_consen 220 YPTLGL 225 (297)
T ss_pred ccHHHH
Confidence 666544
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.97 E-value=46 Score=34.47 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=84.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHhCCCCC---CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 044988 90 IRGHARSETPEKSVYLYKQMIDKETEP---DEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMS 166 (538)
Q Consensus 90 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (538)
|+.+.+.+.+++|++.-+.-.. ..| -.......|..+...|+++.|-...-.|... +..-|--.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 5566777888888887765543 334 2345677788888888888888877777543 344444444455554
Q ss_pred CCCCChhHHHHHhhcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHccCC-------------C-------CChHHHHHHH
Q 044988 167 GGECGVGCARLLFDDMPA-RSVVSWNSLLKGYVKRGDIDGAWKIFDEMP-------------H-------RNVVSWTTMI 225 (538)
Q Consensus 167 g~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------~-------~~~~~~~~li 225 (538)
++ ......++=.-.. -+...|..++..+.. .+...-.++..+-+ + .+...-..|+
T Consensus 437 ~~---l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQ---LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cc---cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 44 3322222211111 155677777777665 33333222222221 0 1222334477
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 044988 226 SGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~m~~ 246 (538)
.-|...+++.+|+.++-..++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 778888888888888876643
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=11 Score=32.62 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=21.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
.+..+...-+..+++.+|..+|+++... .+..+
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~-s~~n~ 188 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARS-SLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccch
Confidence 3444444445567889999999988765 44333
No 311
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.70 E-value=22 Score=30.62 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=149.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHH
Q 044988 231 NGKSRQALSLFNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIE 309 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (538)
.+....+...+.......... ....+......+...+.+..+...+...... ...+.....+......+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL---ELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHHHhhHH
Confidence 456666777777666543321 3567777777888888888888887777652 024555556667777788888888
Q ss_pred HHHHHHHhcCCCCcch---HHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC--CccHHHHHH
Q 044988 310 EAYGVFRKMQRRNTVS---WTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI--KPRIEHYGC 384 (538)
Q Consensus 310 ~a~~~~~~m~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~ 384 (538)
.+.+.+......+... ....... .+...|+++.|...+...... .. ......+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 172 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALG-------------------ALYELGDYEEALELYEKALEL-DPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHH-------------------HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHH
Confidence 8888888776522211 1111110 445556788888888887432 11 123444455
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMP-MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK 461 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 461 (538)
....+...++.+++...+.... ..++ ...+..+...+...++.+.|...+... ....|.....+. .+...+...|
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 250 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA-LELDPDNAEALY-NLALLLLELG 250 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH-HhhCcccHHHHh-hHHHHHHHcC
Confidence 5555778899999999998874 3333 677778888889999999999999999 777787444345 5556666777
Q ss_pred ChHHHHHHHHHHHhC
Q 044988 462 RWQDVAAVRQKMIKM 476 (538)
Q Consensus 462 ~~~~A~~~~~~m~~~ 476 (538)
.++++...+.+....
T Consensus 251 ~~~~~~~~~~~~~~~ 265 (291)
T COG0457 251 RYEEALEALEKALEL 265 (291)
T ss_pred CHHHHHHHHHHHHHh
Confidence 899999988887764
No 312
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.86 E-value=14 Score=29.55 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHhCCCCCh--hHHHHHHHHHHccCChhHHHHHHhcCCC---------CCcchHHHHHHHHhcCCC-chHHHHHHHHhHh
Q 044988 44 IINGFSQKN--YILAKLLAFYVTSGYLINAHKVFEKTEN---------PSTAIWNQMIRGHARSET-PEKSVYLYKQMID 111 (538)
Q Consensus 44 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~ 111 (538)
.+.+..++. ...+.+++-.+..+++.-...+++.+.. .+..+|++++.+.++... ---+..+|.-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 344455544 3557777777777888888877776652 355678888888765554 3456667777777
Q ss_pred CCCCCCcchHHHHHHHHHcc
Q 044988 112 KETEPDEYTYSFLLSVCARC 131 (538)
Q Consensus 112 ~~~~p~~~~~~~li~~~~~~ 131 (538)
.+.++++.-|..+|.++.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 77788888888888877664
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.53 E-value=1.4 Score=23.12 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 044988 452 LVANVYAAAKRWQDVAAVRQ 471 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~ 471 (538)
.++.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 66777777777777777664
No 314
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.51 E-value=25 Score=30.25 Aligned_cols=204 Identities=17% Similarity=0.114 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRA-RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
...+......+...+++..+...+...... ........+..........++...+...+...... .+.+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-----DPDPDLAEA 133 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-----CCCcchHHH
Confidence 345555566666666666666666665542 22334444555555555666666666666666554 111112222
Q ss_pred HHHH-HHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 297 ALIH-MYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 297 ~l~~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
.... .+...|+++.|...+.+....+.. ..... ..+......+...++.+.+...+......
T Consensus 134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 134 LLALGALYELGDYEEALELYEKALELDPE-LNELA-------------EALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ccchH-------------HHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 2333 677788888888888776432211 00000 11111111144456788888888888754
Q ss_pred Ccc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 376 KPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 376 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
.++ ...+..+...+...++++.|...+.... ..|+ ...+..+...+...+..+.+...+++. ....|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA-LELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH-HHhCcc
Confidence 333 6778888888888999999999998774 3444 445555555555777899999999998 666665
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.24 E-value=20 Score=28.74 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=57.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCCccHHH
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN-TVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~ 343 (538)
..++++++..+++.+.-. .|.....-..-...+...|++++|.++|+++.+.. ...|..-+.+++-...-+.
T Consensus 22 ~~~d~~D~e~lLdALrvL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp-- 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA-- 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh--
Confidence 467777777777776665 44444433344556778899999999999988754 3356555555554433332
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
.|..........+....+..+.+.+.
T Consensus 95 -~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 -EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 23333333334445555555555554
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.76 E-value=3.2 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888877754
No 317
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=37 Score=31.32 Aligned_cols=112 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH--HHHHHHccCChHHH
Q 044988 200 RGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQ--VALVA--ALSACAEIGDLKLG 272 (538)
Q Consensus 200 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~--li~~~~~~~~~~~a 272 (538)
.|+..+|-..++++.+ .|..++.-.=.+|.-+|+...-...+++.... ..||. .+|.. ..-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444432 23344444445555555555555555554432 12222 12222 12222345555555
Q ss_pred HHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044988 273 KWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (538)
+..-+...+. .+.+.-...++...+...|+..++.++..+
T Consensus 195 Ek~A~ralqi-----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQI-----NRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccC-----CCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555443 333333333444555555555555555443
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.26 E-value=3.4 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777776655
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.14 E-value=2.3 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.++.++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.97 E-value=6.9 Score=28.76 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHH
Q 044988 101 KSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNL 159 (538)
Q Consensus 101 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (538)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+....|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHH
Confidence 455566666667778888888888888888888888888888877652 2222245444
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.91 E-value=3.1 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
++.+...|...|++++|..+++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444444444444444444
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.90 E-value=24 Score=29.93 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=46.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+.+.|+ +.|.+.|-.+...+.--+......+..-| ...+.+++..++-...+.... +...++..+.+|+..|.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcc
Confidence 344455 56666666666555443433333333333 356667777777666665322 224556666677777777777
Q ss_pred HHHHH
Q 044988 308 IEEAY 312 (538)
Q Consensus 308 ~~~a~ 312 (538)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 76653
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.75 E-value=51 Score=32.39 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
...+++..+..+..+.-+..+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 34444555555555555555555555522 3444455555555544 334444455555554
No 324
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=1.1e+02 Score=36.37 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=64.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHccCChhHHHHHHhc-CCCCCcchHHHHHHHHhcCCC
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFS--QKNYILAKLLAFYVTSGYLINAHKVFEK-TENPSTAIWNQMIRGHARSET 98 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 98 (538)
++..+--+++.+.+|...+++-.....+ .....+..+...|+.-+++|....+... ...|+ .++ -|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 3444555566666666666653110000 1122333344477777777777666652 33332 222 2333456777
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 044988 99 PEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRV 144 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 144 (538)
+..|...|+.+.+.+ ++...+++-++......|.++...-..+..
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 777888888777654 333556666666666666666655544433
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.59 E-value=4.3 Score=36.60 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CCc-----chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHH
Q 044988 287 REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-RNT-----VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVD 360 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~ 360 (538)
|.+....+...++..-....+++.+...+-++.. |+. .+..+++..+.+- +++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky---------------------~pq 117 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY---------------------DPQ 117 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc---------------------ChH
Confidence 4444444445566666666778888887777664 221 1222223322222 455
Q ss_pred HHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 361 EGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 361 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
+++.++..=++ ||+-||..+++.+|+.+.+.+++.+|..+...|.
T Consensus 118 ~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 118 KAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666665554 4999999999999999999999999988887664
No 326
>PRK09687 putative lyase; Provisional
Probab=82.46 E-value=39 Score=30.86 Aligned_cols=228 Identities=11% Similarity=-0.032 Sum_probs=110.5
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHHHH
Q 044988 183 PARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKS----RQALSLFNEMRRARVGLDQVALVA 258 (538)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ 258 (538)
..+|....-..+.++...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3445555555555565555543333333333345555555556666666653 4566666655332 345444445
Q ss_pred HHHHHHccCChHH--HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 044988 259 ALSACAEIGDLKL--GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ 336 (538)
Q Consensus 259 li~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 336 (538)
.+.++...+.... .......+... -...+..+-...+.++.+.|+.+....+..-+..+|...-...+.++.+.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~----~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQIT----AFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHH----hhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 5555544332110 11122222221 11223344446667777777654444444444445444333333333332
Q ss_pred CCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 044988 337 GYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGS 416 (538)
Q Consensus 337 ~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 416 (538)
+. +...+...+..+.. .+|..+....+.++.+.|+. .|...+-+....++ ....
T Consensus 187 ~~-------------------~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~ 240 (280)
T PRK09687 187 KY-------------------DNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDL 240 (280)
T ss_pred CC-------------------CCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHH
Confidence 21 12233344444432 35666666777777777774 34444333322333 2345
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 417 LLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
.+.++...|+. +|...+.++ .+..|+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l-~~~~~d 266 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTL-LYKFDD 266 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHH-HhhCCC
Confidence 66667777774 577777777 555553
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.37 E-value=2.6 Score=25.63 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
.|+.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999988543
No 328
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.17 E-value=19 Score=32.26 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARVGLDQVA-------LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
+.+...+.+++++|+..|.+....|+..|..+ ...+...|.+.|+.....+......+.+..-..|.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667788888888888888877766554 44566667777776554444333322211112333344444
Q ss_pred HHHHHHHhC-CCHHHHHHHHHhcCC---C------CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 044988 297 ALIHMYASC-GEIEEAYGVFRKMQR---R------NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSH 355 (538)
Q Consensus 297 ~l~~~~~~~-g~~~~a~~~~~~m~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~ 355 (538)
+|+..+... ..++....+.....+ + ....-..++..+.+.|.+.+|+...+.+++-+.+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 555554432 335555555544432 1 0112234677888888888888666666554443
No 329
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.92 E-value=39 Score=30.46 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHHHhccCC-CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Q 044988 245 RRARVGLDQVALVAALSACAEIGDLK-LGKWIHSYVEENFSVG-REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN 322 (538)
Q Consensus 245 ~~~g~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 322 (538)
.+.+.++|......++..+...+.-+ .-..+.+.+.+.-..+ ...-++.....+...|.+.|++.+|+..|-.-..++
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 33455666555555555544332211 1233333333332111 233456777889999999999999999887765555
Q ss_pred cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 323 TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 323 ~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
...+..++.-....|...++-......+--|.-.+++..|...+....+
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555445655565666665544444444445555666666666655544
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.43 E-value=2 Score=23.70 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc
Q 044988 415 GSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
-.+..++.+.|++++|.+.|+++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 34667788899999999999986
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.38 E-value=3.3 Score=25.17 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhC
Q 044988 124 LLSVCARCGLFREGEQVHGRVLASG 148 (538)
Q Consensus 124 li~~~~~~~~~~~a~~~~~~~~~~~ 148 (538)
+..+|...|+.+.|..+++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777788888888877777544
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.85 E-value=4.1 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 449 YLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 449 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|. .++.+|...|++++|.+.|++..+
T Consensus 4 ~~-~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YY-NLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HH-HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56 889999999999999999998765
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.53 E-value=5 Score=36.65 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044988 195 KGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 244 (538)
+-|.++|.+++|+..|..-.. | |.+++..-..+|.+...+..|..--...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 345556666666666655332 3 5555555555666666555554444433
No 334
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.68 E-value=65 Score=31.05 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMR 245 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (538)
+...+|+-|...|+..+..+.++++-
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34567777777888877777776553
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.48 E-value=65 Score=30.43 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 186 SVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR-------NVVSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
...+|..+.+.+.+.|.++.|...+..+... .+...-.-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888999999988888877642 233444445566677888888888888776
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.16 E-value=4.5 Score=36.90 Aligned_cols=109 Identities=7% Similarity=-0.021 Sum_probs=73.7
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPN--DAVLGSLLLGCRIHNN 426 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~ 426 (538)
.+-|.+.|.+++|.++|...+. +.| |.+++..-..+|.+..++..|..-......-.+ ...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999998874 466 888888888899999988877665555431111 2234444444445567
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHH
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVA 467 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 467 (538)
..+|.+-++.. .++.|.+.. .. ..+.+-....++.
T Consensus 181 ~~EAKkD~E~v-L~LEP~~~E-Lk----K~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETV-LALEPKNIE-LK----KSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHH-HhhCcccHH-HH----HHHHHhcchHhhh
Confidence 77777778877 899999655 22 4444444444443
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.14 E-value=44 Score=33.49 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=79.7
Q ss_pred HHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCH
Q 044988 155 IRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKS 234 (538)
Q Consensus 155 ~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~ 234 (538)
..+.+...+-+.|- .++|+.+--. +| .-.....+.|+++.|.++..+. .+..-|..|..+..+.+++
T Consensus 616 ~rt~va~Fle~~g~---~e~AL~~s~D---~d-----~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 616 IRTKVAHFLESQGM---KEQALELSTD---PD-----QRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhhHHhHhhhccc---hHhhhhcCCC---hh-----hhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccc
Confidence 34455555555555 5555443211 11 1112334567777777665543 3556788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHH
Q 044988 235 RQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGV 314 (538)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (538)
..|.+.|.+... |..|+-.+...|+-+....+-....+. +. . |.-..+|...|+++++.++
T Consensus 683 ~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~----g~-~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 683 PLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ----GK-N-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred hhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh----cc-c-----chHHHHHHHcCCHHHHHHH
Confidence 888888887754 345666666677766655555555554 22 2 2233456677888888888
Q ss_pred HHhc
Q 044988 315 FRKM 318 (538)
Q Consensus 315 ~~~m 318 (538)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7664
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.75 E-value=6.6 Score=20.68 Aligned_cols=20 Identities=10% Similarity=-0.178 Sum_probs=8.4
Q ss_pred HHHHHhcCCHHHHHHHHHHc
Q 044988 418 LLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~ 437 (538)
...+...++++.|...+++.
T Consensus 8 a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444443
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.50 E-value=12 Score=33.58 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+++.....|..+|.+.+|.++.++. ..+.|-+.+.+. .|...|...|+--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~-ltldpL~e~~nk-~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRA-LTLDPLSEQDNK-GLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH-hhcChhhhHHHH-HHHHHHHHhccchhhhhHHHHHH
Confidence 3444556799999999999999999 999999999777 89999999999888888888875
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.22 E-value=39 Score=28.74 Aligned_cols=68 Identities=13% Similarity=-0.041 Sum_probs=32.4
Q ss_pred hHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh---CCCCchhHHhHHHHHHHhcCC
Q 044988 100 EKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLAS---GYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+.|.+.|-.+...+.--++.....|...|. ..|.+++..++.+.++. +-.+|+..+.+|++.|.+.|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 445555555554443333333333333333 34555555555555543 113445555555555555555
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.21 E-value=10 Score=26.39 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=33.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHH
Q 044988 355 HGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLV 402 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 402 (538)
+.++.++|+..|....++..-.|+ -.++..|+.+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888887776333333 346777888888888888776543
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.92 E-value=48 Score=28.13 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=10.1
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 044988 228 CAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~ 246 (538)
+.++|++++|..-|.+.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 4445555555555555544
No 343
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=73.65 E-value=54 Score=27.60 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC
Q 044988 217 NVVSWTTMISGCAQN----GKSRQALSLFNEMRRARVGLDQV----ALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE 288 (538)
Q Consensus 217 ~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 288 (538)
+...++.++..+.+. ++.+-++.+=.+.+..++.++-. ....-+..|-..||+...-.+|-.+..
T Consensus 7 ~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~------- 79 (233)
T PF14669_consen 7 DPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM------- 79 (233)
T ss_pred CHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-------
Confidence 455566666555443 44555555555666556555433 333344455556666554444433332
Q ss_pred CcchhHHHHHHHHHHhCCCHHH--------HHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHH-----HHHHHHHHhcc
Q 044988 289 PVLVSLNNALIHMYASCGEIEE--------AYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALL-----TFLGVLSACSH 355 (538)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~--------a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~-----~~~~ll~~~~~ 355 (538)
.+.++.+ |+.+.++-+++..+.|.....+-++.-+.+++-. +=.+++-.|.+
T Consensus 80 ---------------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk 144 (233)
T PF14669_consen 80 ---------------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHK 144 (233)
T ss_pred ---------------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHH
Confidence 2222222 4444555555556777777777777766666552 23345566666
Q ss_pred cCcHHHHHHHHHHhhhhc-------C------CCccHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 356 GGFVDEGRQFFECMNQNW-------G------IKPRIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~-------~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
.-++.+++++++.+-+.. | ..+.-...|.....+.+.|.++.|+.++++-
T Consensus 145 ~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 145 TLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 677777777777765430 1 1233344555666666666666666666643
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.45 E-value=53 Score=31.89 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=83.2
Q ss_pred cCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQV 433 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~ 433 (538)
.|++..|.+-+....+++.-.|+.....+. .+...|.++.+...+.... +.....+...++....+.|+++.|...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 356666655444444444445655444433 3567899999999998774 345667888899999999999999999
Q ss_pred HHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 044988 434 AQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWV 487 (538)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 487 (538)
.+.| .+.+-.++.... .-+-.--..|-++++.-.++++..-+ |+...-|+
T Consensus 380 a~~~-l~~eie~~ei~~-iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v 429 (831)
T PRK15180 380 AEMM-LSNEIEDEEVLT-VAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWV 429 (831)
T ss_pred HHHH-hccccCChhhee-eecccHHHHhHHHHHHHHHHHHhccC--Chhcccce
Confidence 9999 655555555222 22222344577899999999987633 33344454
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.60 E-value=11 Score=24.00 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 416 SLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.+.-++.+.|++++|.+..+.+ .+..|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~l-L~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDAL-LEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-HHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH-HhhCCCcHH
Confidence 3556788999999999999999 999999987
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.26 E-value=55 Score=27.33 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhhcCCCccHHHHHHHHHHh---hhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC-
Q 044988 359 VDEGRQFFECMNQNWGIKPRIEHYGCMVDLF---SRAGLMDEAFSLVQNM--------PMKPN-DAVLGSLLLGCRIHN- 425 (538)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~- 425 (538)
++.|++..+...... +.|...++....++ +...+..++.+++++. .+.|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 345555555533331 22444444433333 3333434454444443 25677 466667766654433
Q ss_pred ----------CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 426 ----------NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 426 ----------~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
.+++|...|+++ ...+|++.. |...| ... ++|-++..++.+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkA-v~~~P~ne~-Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKA-VDEDPNNEL-YRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHH-HHH-TT-HH-HHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHH-HhcCCCcHH-HHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 256677777777 889999988 77333 333 347777777776655
No 347
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=72.23 E-value=71 Score=28.37 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 044988 417 LLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL--ALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.+-|.+.|.+-.|..-++.+ .+--|+...+.. ..+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v-~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEV-LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHH-HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445577777777777777777 555555544332 155677777887777777644443
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.84 E-value=15 Score=26.25 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHH
Q 044988 200 RGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSR 235 (538)
Q Consensus 200 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 235 (538)
.|+.+.|.++++.++ ..+..|..++.++...|+-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 455555555555555 45555555555555555443
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.72 E-value=16 Score=31.32 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
|.+.-+..+.+.+++.+|+...+.- +.+|. ...-..++..++-.|++++|..-++-+ ..+.|+...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~-a~l~p~~t~ 70 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA-ATLSPQDTV 70 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH-hhcCcccch
Confidence 3445566777889999999888654 44554 566778889999999999999999988 888888654
No 350
>PRK10941 hypothetical protein; Provisional
Probab=71.21 E-value=21 Score=32.19 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+.+-.++.+.++++.|++..+.+ ..+.|+++.-+. -.+-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~l-l~l~P~dp~e~R-DRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEAL-LQFDPEDPYEIR-DRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 355556788899999999999999 889999887666 677888999999999888887765
No 351
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.90 E-value=29 Score=24.82 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHH
Q 044988 36 LFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSV 103 (538)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 103 (538)
+.++++.+...|+- +......+-..-...|+.+.|.+++..++ ..+..|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45667777777743 34444444443346678888888888888 67777888888887777655443
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.90 E-value=82 Score=28.13 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=110.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCC-CCCcchhHHHHHHHHHHhCC
Q 044988 231 NGKSRQALSLFNEMRRARVG---LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVG-REPVLVSLNNALIHMYASCG 306 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 306 (538)
..++++|+.-|++..+..-. ........++....+.+++++....+..+....... ....+....|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45788888888888764222 223344556777778888888888887777653211 11223334456666666555
Q ss_pred CHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC-----
Q 044988 307 EIEEAYGVFRKMQR-----RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIK----- 376 (538)
Q Consensus 307 ~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----- 376 (538)
+.+-....++.-.+ ++...|- .+-..+...|...+.+.+...+++++.+.+.-.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWF----------------KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWF----------------KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeee----------------eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 55554444433211 1111110 112223333444455666666666655432110
Q ss_pred -----ccHHHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHH-----HHhcCCHHHHHHH-HHHch---
Q 044988 377 -----PRIEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKPNDAVLGSLLLG-----CRIHNNAELASQV-AQKLV--- 438 (538)
Q Consensus 377 -----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~-----~~~~~~~~~A~~~-~~~~~--- 438 (538)
--...|..=|++|....+-..-..+|++.. .-|.+..... |+- ..+.|.+++|..- |+..+
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 113466677788877777777667776552 2344443332 232 4567777777643 33332
Q ss_pred hccCCCCccc--HHHHHHHHHHhcC
Q 044988 439 AEIDPEQAAG--YLALVANVYAAAK 461 (538)
Q Consensus 439 ~~~~p~~~~~--~~~~l~~~~~~~g 461 (538)
....|...+. |. .|++++.+.|
T Consensus 263 EsGspRRttCLKYL-VLANMLmkS~ 286 (440)
T KOG1464|consen 263 ESGSPRRTTCLKYL-VLANMLMKSG 286 (440)
T ss_pred ccCCcchhHHHHHH-HHHHHHHHcC
Confidence 3445555442 23 4444444433
No 353
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.81 E-value=1e+02 Score=29.24 Aligned_cols=126 Identities=13% Similarity=0.231 Sum_probs=84.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHchhccC--CCCc--
Q 044988 383 GCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSL------------LLGCRIHNNAELASQVAQKLVAEID--PEQA-- 446 (538)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~--p~~~-- 446 (538)
..|...+-.+|+.++|..++.+..+ .||.++ ++.|...+|+-.|--+-+++..+.. |+..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 3456667789999999999998862 233322 4568888999999988888852222 2211
Q ss_pred --ccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 044988 447 --AGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTL 513 (538)
Q Consensus 447 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 513 (538)
..|. +++......+.+=++-+.++.+-+.|-......-|+..-..+--|+...+..+.-++.....
T Consensus 211 KlkyY~-lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~i 278 (439)
T KOG1498|consen 211 KLKYYE-LMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARI 278 (439)
T ss_pred HHHHHH-HHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHH
Confidence 2244 77777778888999999999998776666555557544444445666666565556655554
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.71 E-value=1.1e+02 Score=29.19 Aligned_cols=116 Identities=9% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHH------------HHHHHHHHHhcc
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEAL------------LTFLGVLSACSH 355 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~------------~~~~~ll~~~~~ 355 (538)
.|..+.+.-.+...+...|+.+.|.+++++..--=..++......+........+. .+...-+..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 67778887788888888999888888887764210001111110000000000000 223334667778
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc--cHHHHHHHHHHhh-hcCChHHHHHHHHhCC
Q 044988 356 GGFVDEGRQFFECMNQNWGIKP--RIEHYGCMVDLFS-RAGLMDEAFSLVQNMP 406 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 406 (538)
.|.+..|.++.+-+..- .| |+.....+|+.|+ ++++++--+++.+...
T Consensus 116 RG~~rTAlE~~KlLlsL---dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL---DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCcHHHHHHHHHHHHhc---CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 88999999999888744 55 4555666677765 6677777777777643
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.56 E-value=20 Score=32.20 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
+++...+.|...|.+.+|.++.+...+. .|.+...+..|+..+...|+--.+.+.++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-----dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-----DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-----ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556677777777777777777775 6677777777777777777766666666554
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.37 E-value=26 Score=30.17 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=34.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 258 AALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 258 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
..++.+.+.+.+.++......-++. .|.+......+++.||-.|++++|..-++-.-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555566666666555554443 45555555667777777777777776665443
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=53 Score=29.55 Aligned_cols=121 Identities=8% Similarity=0.093 Sum_probs=75.6
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCccHH-------HHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHHHHHH
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKPRIE-------HYGCMVDLFSRAGLMDEAFSLVQNM-------PMKPNDAVLGSL 417 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l 417 (538)
-..+.+++++|...+.++... |+..|.. +...+.+.|.+.|+...--+..... ..........+|
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 344567889999999998877 7766543 4456788888988877655554433 222234566677
Q ss_pred HHHHHh-cCCHHHHHHHHHHchhccCCCCcccH-----HHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 418 LLGCRI-HNNAELASQVAQKLVAEIDPEQAAGY-----LALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 418 ~~~~~~-~~~~~~A~~~~~~~~~~~~p~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+..+-. ...++.-+.+..... +.--.....| ..-++.++.+.|++.+|+.++..+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~i-ewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALI-EWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 776533 345666666666553 1111111111 1256778899999999998876664
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.92 E-value=47 Score=24.55 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhC
Q 044988 33 TKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDK 112 (538)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 112 (538)
.++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-.|-. .+.|-.+++..-+.+|-..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555555444322 11122222233555666666666666666666666655543 3455555555555555555
Q ss_pred CCCCCcchH
Q 044988 113 ETEPDEYTY 121 (538)
Q Consensus 113 ~~~p~~~~~ 121 (538)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3443333
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.90 E-value=1.2e+02 Score=29.47 Aligned_cols=38 Identities=5% Similarity=-0.046 Sum_probs=17.7
Q ss_pred HHHHHHhCCCCChhH--HHHHHHHHHccCChhHHHHHHhc
Q 044988 40 HSQIIINGFSQKNYI--LAKLLAFYVTSGYLINAHKVFEK 77 (538)
Q Consensus 40 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 77 (538)
.+.+.+.|..|+... ....+...+..|+.+-+.-+++.
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH 57 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 444445565554321 22334444455665555555444
No 360
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=66.81 E-value=5.7 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHcCcccCCccc
Q 044988 505 QASLIYKTLGEITMQAMQEGYKPDISEL 532 (538)
Q Consensus 505 ~~~~~~~~l~~~~~~m~~~~~~p~~~~~ 532 (538)
...+++..+++...++|..|++||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456778888889999999999997654
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.74 E-value=1.4e+02 Score=29.53 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHH
Q 044988 287 REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGR 363 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~ 363 (538)
+.+.....-+.+++.+.+.|-..+|..++..+.. ++...|..+|..-... .+| ++..++
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~--------------~sc----~l~~~r 516 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQ--------------ESC----NLANIR 516 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhH--------------hhc----CchHHH
Confidence 5566666667888888888889999988887765 3444454444322111 111 366778
Q ss_pred HHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 364 QFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 364 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
.+++.+...+| .|+..|...+.--...|..+.+-.++.+.
T Consensus 517 ~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 517 EYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 88888888877 55666666666666777777666666544
No 362
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.51 E-value=33 Score=32.95 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHch-------hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 413 VLGSLLLGCRIHNNAELASQVAQKLV-------AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.-.|++..+-.||+..|+++++.+. ....+-..+++. .++-+|.-.+|+.+|++.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~Y-yvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYY-YVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777788888888777764 222344455666 77778888888888888887764
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.93 E-value=1.9e+02 Score=30.87 Aligned_cols=80 Identities=18% Similarity=0.046 Sum_probs=44.8
Q ss_pred HccCChHHHHHHHHHHHHhccCCCCCcch---hHHHHHHH-HHHhCCCHHHHHHHHHhcCC--------CCcchHHHHHH
Q 044988 264 AEIGDLKLGKWIHSYVEENFSVGREPVLV---SLNNALIH-MYASCGEIEEAYGVFRKMQR--------RNTVSWTSMIT 331 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~ 331 (538)
....++++|..+..++......++..... ..++.|-. .....|+++.|.++.+.... ...+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999998888774433222221 12222222 22346788888887776543 23444555555
Q ss_pred HHHhcCCccHHH
Q 044988 332 GFAKQGYAQEAL 343 (538)
Q Consensus 332 ~~~~~~~~~~a~ 343 (538)
+..-.|+++.|.
T Consensus 506 a~~~~G~~~~Al 517 (894)
T COG2909 506 AAHIRGELTQAL 517 (894)
T ss_pred HHHHhchHHHHH
Confidence 555555444443
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.46 E-value=1e+02 Score=27.80 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHH--
Q 044988 225 ISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMY-- 302 (538)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 302 (538)
|.+++..+++.+++...-+--+.--+........-|-.|.+.+.+..+.++-....+.. ......-|.+++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p----~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP----SNQSLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc----ccCCchhhHHHHHHHHH
Confidence 45666666666666555443332111122233334444556666666666555555541 111122234444443
Q ss_pred ---HhCCCHHHHHHHH
Q 044988 303 ---ASCGEIEEAYGVF 315 (538)
Q Consensus 303 ---~~~g~~~~a~~~~ 315 (538)
.-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 3467777777776
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.31 E-value=60 Score=25.17 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 235 RQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
-+..+-++.+....+.|+.......+++|-+.+|+..|.++++-++..
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355566666667778899999999999999999999999998888776
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.11 E-value=1.8e+02 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=20.4
Q ss_pred HHHHHHHHH-----HHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 412 AVLGSLLLG-----CRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 412 ~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.|+..|+.. ....|+++.|++.++++ ++-|.++.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L--~liP~~~~ 539 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL--DLIPLDPS 539 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT--T-S-S-HH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCCHH
Confidence 455555443 56788888888888886 57776554
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=25 Score=30.65 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=50.0
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCccH-HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHH
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKPRI-EHYGCMVDLFSRAGLMDEAFSLVQNM-PMKPNDAVLGSL-LLGCRIHNNAE 428 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~ 428 (538)
.|.....++.|...+.+.+ -+.|+. .-|..=+..+.+..+++.+..--.+. .+.||.+.-..+ ..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4555566777777666666 346765 33455566666777777665444333 355665444333 33456666777
Q ss_pred HHHHHHHHch
Q 044988 429 LASQVAQKLV 438 (538)
Q Consensus 429 ~A~~~~~~~~ 438 (538)
.|+..+.++.
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777773
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.81 E-value=38 Score=26.21 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 044988 101 KSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLAS 147 (538)
Q Consensus 101 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 147 (538)
+..+-++.+...++.|++......+++|.+.+|+..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455666667778999999999999999999999999999988765
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.77 E-value=53 Score=28.56 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=54.0
Q ss_pred hhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHHch-hccCCCC----cc
Q 044988 389 FSRAGLMDEAFSLVQNM-------PMKPN--DAVLGSLLLGCRIHNNA-------ELASQVAQKLV-AEIDPEQ----AA 447 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~-~~~~p~~----~~ 447 (538)
|.....+++|++.|.-+ ..+|. +..+..+...|...|+. ..|.+.|++.. .+..|.. .+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 44455566666555433 22333 33444555567777774 45566666653 2222222 24
Q ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 448 GYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
... +++.+..+.|+.++|.+.|.++...+-
T Consensus 167 l~Y-LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLY-LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHH-HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 445 788999999999999999999986543
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.76 E-value=55 Score=24.21 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044988 195 KGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALV 257 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 257 (538)
..+...|++++|..+.+.+.-||...|-.|-. -+.|-.++...-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45566777788887777777777777766643 35566666666666666655 44444443
No 371
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.32 E-value=1.8e+02 Score=30.33 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQV----------ALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE 288 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 288 (538)
.+-..++-.|....+++..+++.+.+++- ||.. .|...++---+.|+-++|....-.+.+. ..
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~----eg 274 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK----EG 274 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh----cC
Confidence 35556667788888899999999988763 3221 2444444445567778887776666665 23
Q ss_pred CcchhHHHHHHH---------HHHhCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccC
Q 044988 289 PVLVSLNNALIH---------MYASCGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGG 357 (538)
Q Consensus 289 ~~~~~~~~~l~~---------~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~ 357 (538)
+..+..|....+ .|...+..+.|.+.|++.-+ |...+--.+...+...|+.
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~------------------ 336 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH------------------ 336 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh------------------
Confidence 332222211111 12233445667777776654 3222111111111111200
Q ss_pred cHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 044988 358 FVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (538)
++.-. ++.. +-..|-..+.+.|.+++..++|+-. ..+.+-.-++++.+|.+..+.|
T Consensus 337 -Fens~----Elq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 337 -FENSL----ELQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred -ccchH----HHHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHH
Confidence 00000 0110 1112223345677777766666532 2344555667888888888888
Q ss_pred hhccCCCCc
Q 044988 438 VAEIDPEQA 446 (538)
Q Consensus 438 ~~~~~p~~~ 446 (538)
.+++|+.-
T Consensus 393 -fKLk~P~W 400 (1226)
T KOG4279|consen 393 -FKLKPPVW 400 (1226)
T ss_pred -hccCCcee
Confidence 77777653
No 372
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.99 E-value=5.5 Score=36.48 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=62.0
Q ss_pred hcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHH
Q 044988 391 RAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAA 468 (538)
Q Consensus 391 ~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 468 (538)
..|.+++|++.|.... .. |....|..-..++.+.+++..|++-+... .++.|+....|- .-..+..-.|.|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~yk-frg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYK-FRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccc-hhhHHHHHhhchHHHHH
Confidence 4566777777776653 33 33445555556677777778888877777 778888777676 66666677788888888
Q ss_pred HHHHHHhCCCCCC
Q 044988 469 VRQKMIKMGVRKP 481 (538)
Q Consensus 469 ~~~~m~~~~~~~~ 481 (538)
.+....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 8888777766543
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.11 E-value=65 Score=24.17 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHh
Q 044988 30 RNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQM 109 (538)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 109 (538)
.-..++|..+.+.+...+-. ...+--.-+..+...|++++|+..=.....||...|-+|-. .+.|--+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 34567788888887777642 22333333445667888888855555555677777766543 4677777777777777
Q ss_pred HhCC
Q 044988 110 IDKE 113 (538)
Q Consensus 110 ~~~~ 113 (538)
-.+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=1.2e+02 Score=30.45 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=89.6
Q ss_pred cCChHHHHHHHHHHHHhccCCC-------CCcchhHHHHHHHHHHhCCCHHHHHHHHHh-------cCCCCc--chHHHH
Q 044988 266 IGDLKLGKWIHSYVEENFSVGR-------EPVLVSLNNALIHMYASCGEIEEAYGVFRK-------MQRRNT--VSWTSM 329 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------m~~~~~--~~~~~l 329 (538)
...++++...|....+.+..++ .|..+...-.+...+...|+.+.+..+..+ ...|.. .+++.-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3445667766766666544333 244555555667778888887776665554 333321 111110
Q ss_pred HH-HHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc--cHHHHHHHHHHhh-hcCChHHHHHHHHhC
Q 044988 330 IT-GFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP--RIEHYGCMVDLFS-RAGLMDEAFSLVQNM 405 (538)
Q Consensus 330 i~-~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 405 (538)
+. .+-.+..+- -+...-+..+.+.|.+..|.++-+.+.+. .| |+.....+|+.|+ ++.++.=.+++++..
T Consensus 331 L~y~~~eNR~Fy---L~l~r~m~~l~~RGC~rTA~E~cKlllsL---dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFY---LALFRYMQSLAQRGCWRTALEWCKLLLSL---DPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHH---HHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 000000000 11112244556778888888888877743 55 5667777888775 566676666666654
Q ss_pred C------CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHc
Q 044988 406 P------MKPNDAVLGSLLLGCRIHNN---AELASQVAQKL 437 (538)
Q Consensus 406 ~------~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~ 437 (538)
. .-||-.--..+...|.+... -+.|...+.++
T Consensus 405 e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQA 445 (665)
T ss_pred HhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 2 33664433445555555444 35555555555
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.65 E-value=66 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044988 216 RNVVSWTTMISGCAQNGK-SRQALSLFNEMRRARVGLDQVALVAALSACAEI 266 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 266 (538)
.+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455678899988876665 456788888888888899999999999988764
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.20 E-value=2.1e+02 Score=29.78 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=45.2
Q ss_pred CCHHHHHHHHccCCC-------CChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHH
Q 044988 201 GDIDGAWKIFDEMPH-------RNVVSWTTMISGCA--QNGKSRQALSLFNEMRRAR---------VGLDQVALVAALSA 262 (538)
Q Consensus 201 g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~ 262 (538)
++...|.+.++.+.. +.+.++-.++.+.. +.+..+++.+.++++.... -.|-..++..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777777766542 22333444444433 3455667777777664321 13345566666665
Q ss_pred HH--ccCChHHHHHHHHHHHHh
Q 044988 263 CA--EIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 263 ~~--~~~~~~~a~~~~~~~~~~ 282 (538)
++ ..|+++.+...++.+.+.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 54 567766666665555443
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.13 E-value=69 Score=25.00 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHH
Q 044988 429 LASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 429 ~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
.+.++|+.|. .++.-.....|. .-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~-~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYE-EWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHH-HHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHH-HHHHHHHHcCCHHHHHHHHHh
Confidence 7778888876 556666666566 888888888999999888864
No 378
>PRK09169 hypothetical protein; Validated
Probab=60.94 E-value=3.7e+02 Score=32.53 Aligned_cols=450 Identities=10% Similarity=0.014 Sum_probs=255.3
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHccCChhHHHHHHhcC----C-------C
Q 044988 17 ALTTRQIFSLLQIRNTTKTLFQIHSQIIING-----FSQKNYILAKLLAFYVTSGYLINAHKVFEKT----E-------N 80 (538)
Q Consensus 17 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-------~ 80 (538)
...+..+...+++..+.....+....+.... -..+...+..+++++++-.+...+...-+.+ . .
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 4556677777887777666666555554422 2345777888999999977666554444332 1 1
Q ss_pred CCcchHHHHHHHHhcCCCchHHHHHHHHhHhC-----C--CCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh------
Q 044988 81 PSTAIWNQMIRGHARSETPEKSVYLYKQMIDK-----E--TEPDEYTYSFLLSVCARCGLFREGEQVHGRVLAS------ 147 (538)
Q Consensus 81 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 147 (538)
-+......++++++|.-+...+...-+.+-.. + -..+......+++++.+-.+-+.+...-..+-..
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 35556777888888887766555544443221 0 1345667888899998887766555443333221
Q ss_pred -CCCCchhHHhHHHHHHHhcCCCCChhHH--------HHHhhcCC---CCCchhHHHHHHHHHhcCCHHHHH----HHHc
Q 044988 148 -GYCSNVFIRTNLMNLYLMSGGECGVGCA--------RLLFDDMP---ARSVVSWNSLLKGYVKRGDIDGAW----KIFD 211 (538)
Q Consensus 148 -~~~~~~~~~~~l~~~~~~~g~~~~~~~a--------~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~----~~~~ 211 (538)
....|.......++++++-.+ -+.+ .++..+.. .-+..-....+++++|-.+.+.+. .+-+
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~---~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~ 358 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPD---TEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAA 358 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 113456667778888888765 3322 22222211 125566677888888877766533 2222
Q ss_pred cCC-------CCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC-C--CCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 044988 212 EMP-------HRNVVSWTTMISGCAQNGKSRQ----ALSLFNEMRRA-R--VGLDQVALVAALSACAEIGDLKLGKWIHS 277 (538)
Q Consensus 212 ~m~-------~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~-g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 277 (538)
.+. .-+..-....+++++|-++-+. |..+..++... + -..|..-....+.++++.+.-+.+.....
T Consensus 359 rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~ 438 (2316)
T PRK09169 359 RLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAAL 438 (2316)
T ss_pred HHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHH
Confidence 222 2456677788899998876543 33344444332 2 23577888899999999887665444433
Q ss_pred HHHHhccCC---CCCcchhHHHHHHHHHHhCCCHHH----HHHHHHhcCC-------CCcchHHHHHHHHHhcCCccHHH
Q 044988 278 YVEENFSVG---REPVLVSLNNALIHMYASCGEIEE----AYGVFRKMQR-------RNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 278 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
.+....... ....+..-..+.+.++++.++.+. +..+..++.. -+..-....+.++.+.+..+.+.
T Consensus 439 aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~ 518 (2316)
T PRK09169 439 ALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACR 518 (2316)
T ss_pred HHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHH
Confidence 332211000 012223333567778887766442 3334433322 24566777888888887766542
Q ss_pred ----------------------HHHHHHHHHhcccCcHHHH----HHHHHHhhhhcC--CCccHHHHHHHHHHhhhcCCh
Q 044988 344 ----------------------LTFLGVLSACSHGGFVDEG----RQFFECMNQNWG--IKPRIEHYGCMVDLFSRAGLM 395 (538)
Q Consensus 344 ----------------------~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 395 (538)
.-+...+.++++-.+.+.+ ..+...+.++.+ -..|.......+.++.+-+..
T Consensus 519 ~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~ 598 (2316)
T PRK09169 519 AAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDE 598 (2316)
T ss_pred HHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCc
Confidence 4455667777777664332 333333322211 123556667778888887754
Q ss_pred HH----HHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch----------hccCCCCcccHHHHHHH
Q 044988 396 DE----AFSLVQNMP------MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV----------AEIDPEQAAGYLALVAN 455 (538)
Q Consensus 396 ~~----A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~p~~~~~~~~~l~~ 455 (538)
.. +..+...+. ..-|..-+..+++++++-.+.+........+- ..+.|.. .. .+.+
T Consensus 599 ~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~---La-N~Ln 674 (2316)
T PRK09169 599 DACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQG---LA-NALN 674 (2316)
T ss_pred hhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHH---HH-HHHH
Confidence 32 233333332 22456677778888888877665544433332 1222322 22 5557
Q ss_pred HHHhcCChHHHHHHHHHH
Q 044988 456 VYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m 473 (538)
++.+-.+...+.+....+
T Consensus 675 ALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 675 ALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHhCCCcHHHHHHHHHH
Confidence 888877766544444444
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.23 E-value=1.6e+02 Score=28.17 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHccCChhHHHHHHhcCC------CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhC---------CCCCC
Q 044988 53 YILAKLLAFYVTSGYLINAHKVFEKTE------NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDK---------ETEPD 117 (538)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 117 (538)
..+.-+.+.|..+|+++.|.+.+.+.. +.....|-.+|.+-.-.|+|......-.+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------CchhHHhHHHHHHHhcCCCCChhHHHHH-----hhcCCCCC
Q 044988 118 EYTYSFLLSVCARCGLFREGEQVHGRVLASGYC------SNVFIRTNLMNLYLMSGGECGVGCARLL-----FDDMPARS 186 (538)
Q Consensus 118 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~~~~a~~~-----~~~~~~~~ 186 (538)
...+..+...+.+ ++..|.+.|-.....-.. |...+....+.+.+.-++ -+--..+ |+...+..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr---~~Lk~~vi~n~~Fk~flel~ 305 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDR---QDLKLNVIKNESFKLFLELE 305 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCH---HHHHHHHHcchhhhhHHhcC
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCC---------CChHHHHHHHH
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMPH---------RNVVSWTTMIS 226 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~ 226 (538)
+..+..+...| .+++..++++++++.. |.+.+.-.+|.
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.70 E-value=23 Score=24.75 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=30.0
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcccHH--HHHHHHHHhcCChHHHHHH
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAAGYL--ALVANVYAAAKRWQDVAAV 469 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~--~~l~~~~~~~g~~~~A~~~ 469 (538)
...+.++|+..|++. .+..++.+..|. ..|+.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~a-L~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKA-LEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHH-HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887 444444433333 2566778888888877765
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.41 E-value=1.4e+02 Score=27.18 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=28.6
Q ss_pred CchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 044988 151 SNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA-----RSVVSWNSLLKGYVKRGDIDGAWKIFDE 212 (538)
Q Consensus 151 ~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 212 (538)
++..+....+..++..++ +.+..+.++.... .|...|..+|+.....|+..-...+.++
T Consensus 200 l~~~vi~~Il~~L~~~~d---W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 200 LTRNVIISILEILAESRD---WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CChhHHHHHHHHHHhccc---HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 333344444444444444 4444444443322 2455555555555555555555555544
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.79 E-value=22 Score=32.32 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=36.0
Q ss_pred CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044988 216 RNVV-SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAAL 260 (538)
Q Consensus 216 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 260 (538)
++.. -|+..|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4444 46789999999999999999999999999877666665443
No 383
>PHA03100 ankyrin repeat protein; Provisional
Probab=58.55 E-value=2e+02 Score=28.69 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=63.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHH-----HHccCChhHHHHHHhcCCCC---CcchHHHHHH
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYI--LAKLLAF-----YVTSGYLINAHKVFEKTENP---STAIWNQMIR 91 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~ 91 (538)
+.+......++.+ +.+.+.+.|..++... ....+.. .+..|..+-+.-+++.-..+ +....+.|..
T Consensus 37 t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 37 LPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112 (480)
T ss_pred hhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence 3444445555543 4455555665554321 1223333 44556655555555543322 2222333333
Q ss_pred HHh-cCCCchHHHHHHHHhHhCCCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHhHHHHHHHhc
Q 044988 92 GHA-RSETPEKSVYLYKQMIDKETEPDEYT--YSFLLSVCARCGLFREGEQVHGRVLASGYCSNVF--IRTNLMNLYLMS 166 (538)
Q Consensus 92 ~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 166 (538)
+.. ..|+.+ +++.+.+.|..++... -.+.+..++..|. .-.++.+.+.+.|..++.. ...+-+...+..
T Consensus 113 A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 113 AISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred HHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 322 344433 3333444554443221 1233334444441 1123344445555444322 122334444555
Q ss_pred CCCCChhHHHHHhhcCCC
Q 044988 167 GGECGVGCARLLFDDMPA 184 (538)
Q Consensus 167 g~~~~~~~a~~~~~~~~~ 184 (538)
|+ .+-+.-+++.-..
T Consensus 187 ~~---~~iv~~Ll~~ga~ 201 (480)
T PHA03100 187 GN---IDVIKFLLDNGAD 201 (480)
T ss_pred CC---HHHHHHHHHcCCC
Confidence 55 5555555554433
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.44 E-value=2.4e+02 Score=29.55 Aligned_cols=95 Identities=11% Similarity=-0.069 Sum_probs=53.1
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch--hccCCCCcccHHHHHHHHHHhcCCh
Q 044988 386 VDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLV--AEIDPEQAAGYLALVANVYAAAKRW 463 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~ 463 (538)
+..+...|....|...+..+....+......+.....+.|..+.++....... ....-..+..|. -.+..+.+.-..
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~-~~~~~~a~~~~v 492 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN-DEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH-HHHHHHHHHcCC
Confidence 34455678888888777766434555566666666778888888877766543 111111223354 333445555555
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 044988 464 QDVAAVRQKMIKMGVRKP 481 (538)
Q Consensus 464 ~~A~~~~~~m~~~~~~~~ 481 (538)
+.+.-.---..+.++.|.
T Consensus 493 ~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 493 PQSYAMAIARQESAWNPK 510 (644)
T ss_pred CHHHHHHHHHHhcCCCCC
Confidence 555433223335666554
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.39 E-value=1.9e+02 Score=28.24 Aligned_cols=10 Identities=0% Similarity=-0.214 Sum_probs=4.4
Q ss_pred HHHHHHHhhh
Q 044988 362 GRQFFECMNQ 371 (538)
Q Consensus 362 a~~~~~~~~~ 371 (538)
+.+-++.|+.
T Consensus 299 C~~ei~~mk~ 308 (413)
T PHA02875 299 CIIELRRIKS 308 (413)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 386
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.96 E-value=2.8e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCC
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTE 79 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 79 (538)
-|..|+..|...|..++|+++|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 35556666666666666666665544
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.89 E-value=1.8e+02 Score=27.85 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC----------C-----------------C-CCHHHHHHH---HHHHHhcCC
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----------M-----------------K-PNDAVLGSL---LLGCRIHNN 426 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~-----------------~-p~~~~~~~l---~~~~~~~~~ 426 (538)
-+.++-.+...+...|+.+.|.+++++.. + . -|...|.++ +..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 35566666677777777777766666541 1 1 244444444 456889999
Q ss_pred HHHHHHHHHHchhccCCC-CcccHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 044988 427 AELASQVAQKLVAEIDPE-QAAGYLALVANVYA-AAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 475 (538)
+..|+++.+-+ ..++|. |+.... ..++.|+ ++++++--+++.+....
T Consensus 119 ~rTAlE~~KlL-lsLdp~~DP~g~l-l~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLL-LSLDPDEDPLGVL-LFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHH-HhcCCCCCcchhH-HHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999 999999 777556 6777765 77888888888887654
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.40 E-value=1.3e+02 Score=27.26 Aligned_cols=74 Identities=9% Similarity=-0.027 Sum_probs=40.7
Q ss_pred HHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHH
Q 044988 90 IRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLY 163 (538)
Q Consensus 90 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (538)
|.+++..++|.+++...-+--+.--+.-......-|-.|.+.+.+..+.++-...+...-.-+...|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 67778888888877765444321111222334444455777777777777776666542222233355554444
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.28 E-value=2.8e+02 Score=30.01 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCCCC--h-----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHH--
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMPHRN--V-----VSWTTMISGCAQNGKS--RQALSLFNEMRRARVGLDQVALV-- 257 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~-- 257 (538)
-|..|+..|...|+.++|++++.+....+ . ..+...+.-+.+.+.. +-++++-....+....-....|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 58889999999999999999998876522 1 1233344444444433 44444444433321111111111
Q ss_pred ----------HHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC--------HHHHHHH-----
Q 044988 258 ----------AALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE--------IEEAYGV----- 314 (538)
Q Consensus 258 ----------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~----- 314 (538)
..+-.+......+.+..+++.+... ....+....+.++..|++.=+ -+++.+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~----~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rek 661 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD----NRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREK 661 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh----ccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHH
Confidence 1222345566777788888888776 555566777788888775322 1122222
Q ss_pred HHhcCC------C--------CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHH
Q 044988 315 FRKMQR------R--------NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIE 380 (538)
Q Consensus 315 ~~~m~~------~--------~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 380 (538)
+..+.+ | ...-|.-..-.+.+.|+.++|+..|...+ ++++.|..+....-+ ...++..
T Consensus 662 l~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L------~d~~~A~~Yc~~~y~--~~~~~~~ 733 (877)
T KOG2063|consen 662 LLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL------DDIDAAESYCLPQYE--SDKTNKE 733 (877)
T ss_pred HHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh------cchhHHHHHHHHhcc--CCCcccH
Confidence 111111 1 11122222223347777777776666555 356666666555443 2345777
Q ss_pred HHHHHHHHhhhc
Q 044988 381 HYGCMVDLFSRA 392 (538)
Q Consensus 381 ~~~~l~~~~~~~ 392 (538)
.|..++..|...
T Consensus 734 ~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 734 IYLTLLRIYLNP 745 (877)
T ss_pred HHHHHHHHHhcc
Confidence 888888877765
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.88 E-value=38 Score=24.68 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHch----hccCCCC----cccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 421 CRIHNNAELASQVAQKLV----AEIDPEQ----AAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~----~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+.|++..|.+.+.+.. .+..+.. ..+.. .++......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all-~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALL-NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467788888877666664 1122210 11123 466778889999999999988764
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.78 E-value=45 Score=28.35 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCC
Q 044988 407 MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p 443 (538)
..|+..++..++.++...|+.++|.+..+++ ..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~-~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA-RRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCC
Confidence 5789999999999999999999999999998 78888
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.84 E-value=44 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC
Q 044988 362 GRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP 409 (538)
Q Consensus 362 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 409 (538)
..+..++.. ...|+..+|..++.++...|+.++|.++.+++. .-|
T Consensus 130 ~~~~a~~~l---~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLL---RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHH---HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444 447999999999999999999999999999885 335
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.67 E-value=18 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 044988 96 SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVC 128 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 128 (538)
.|.-..|-.+|+.|++.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4566778888888888887777 466666543
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.37 E-value=3e+02 Score=29.47 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=62.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----H---HHHHHHHH-HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 229 AQNGKSRQALSLFNEMRRARVGLDQ----V---ALVAALSA-CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~----~---~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
....++++|..+..++...-..|+. . .++.+-.. ....|+++.+.++.+....................+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999998887654222221 1 23332222 24578999999999988887444444555666677788
Q ss_pred HHHhCCCHHHHHHHHHhcCC
Q 044988 301 MYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~ 320 (538)
+..-.|++++|..+.....+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 88889999999988776554
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.64 E-value=47 Score=20.61 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044988 24 FSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAF 61 (538)
Q Consensus 24 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 61 (538)
+....+.|-.+++..+++.|.+.|+..++..+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34455677888999999999999999999988887763
No 396
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.30 E-value=1.4e+02 Score=25.36 Aligned_cols=94 Identities=11% Similarity=-0.053 Sum_probs=65.6
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH----HHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI----EHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAV--LGSLLLG 420 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~ 420 (538)
..+...+...|++++|...++..... +-|. .+--.|.......|.+++|+.+++... .++-.. ...-.+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhH
Confidence 34456677788999999999887643 2232 222345667788999999999999876 333222 3334456
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCC
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
+...|+-++|...|++. ....++.
T Consensus 169 ll~kg~k~~Ar~ay~kA-l~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKA-LESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHH-HHccCCh
Confidence 99999999999999999 5554433
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.14 E-value=1.7e+02 Score=26.33 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=38.9
Q ss_pred CchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHH
Q 044988 151 SNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQ 230 (538)
Q Consensus 151 ~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 230 (538)
-++..+..+...|.+.|+ +.+|+..|-....++...+..++......|...++ +... ...+--|.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~---~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dlfi-~RaVL~yL~ 153 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGN---YYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DLFI-ARAVLQYLC 153 (260)
T ss_dssp --HHHHHHHHHHHHHTT----HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcc---HHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hHHH-HHHHHHHHH
Confidence 345667777777777777 77777766544433333332233222222222211 1111 122233455
Q ss_pred cCCHHHHHHHHHHHHH
Q 044988 231 NGKSRQALSLFNEMRR 246 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~ 246 (538)
.++...|...++...+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6677777776666554
No 398
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.43 E-value=57 Score=20.22 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALS 261 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 261 (538)
..+.|-..++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3566778888888999988888888877776654
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.25 E-value=1e+02 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=18.8
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHh
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMID 111 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 111 (538)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777776655
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.15 E-value=22 Score=23.60 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.++.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555543
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.09 E-value=36 Score=22.52 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 377 PRIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 377 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
.|...--.+|.+|...|++++|.++++++
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444555666666666666655543
No 402
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.35 E-value=30 Score=33.58 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=60.5
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHH
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 342 (538)
....++++.|..++..+.+. .|.....|..-..++.+.+++..|..=+.+..+-+ -..+.+|.+.|
T Consensus 14 ~l~~~~fd~avdlysKaI~l-----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----P~~~K~Y~rrg----- 79 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANRALAHLKVESFGGALHDALKAIELD----PTYIKAYVRRG----- 79 (476)
T ss_pred hcccchHHHHHHHHHHHHhc-----CCcceeeechhhhhheeechhhhHHHHHHhhhhcC----chhhheeeecc-----
Confidence 34556667777777777665 55555555444466777777777777666666544 23455666665
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Q 044988 343 LLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLF 389 (538)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 389 (538)
.+|...+...+|...|+... .+.|+..-....+.-|
T Consensus 80 --------~a~m~l~~~~~A~~~l~~~~---~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 80 --------TAVMALGEFKKALLDLEKVK---KLAPNDPDATRKIDEC 115 (476)
T ss_pred --------HHHHhHHHHHHHHHHHHHhh---hcCcCcHHHHHHHHHH
Confidence 33444456666777777665 3466655444444433
No 403
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.96 E-value=43 Score=23.90 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=17.5
Q ss_pred CCHHHHHHHHccCCCCChHHHHHHHHHHHHcCC
Q 044988 201 GDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGK 233 (538)
Q Consensus 201 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 233 (538)
.+.+++..+++.++..+..+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344555555555555555555555555555444
No 404
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.82 E-value=99 Score=25.87 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcC----ChHHHHHHHHhCC--------CCCCHHHHHHHHHHHH
Q 044988 359 VDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAG----LMDEAFSLVQNMP--------MKPNDAVLGSLLLGCR 422 (538)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~ 422 (538)
+++|..-|++... +.|+ ..++..+..+|...+ +..+|.++|++.. .+|+..+|+.-+..+.
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5666666777664 4787 568888888776544 3445555555442 6799999998888764
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.55 E-value=1e+02 Score=25.89 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhcCCCcc--HHHH-----HHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044988 359 VDEGRQFFECMNQNWGIKPR--IEHY-----GCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLG 420 (538)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 420 (538)
++.|+.+|+.+.+... .|+ .... -..+-.|.+.|.+++|.+++++....|+......-+..
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 5677777877776532 221 1111 12234566677777777777666445554444433333
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.43 E-value=97 Score=27.67 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=9.6
Q ss_pred HHHHhcccCcHHHHHHHHHHh
Q 044988 349 VLSACSHGGFVDEGRQFFECM 369 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~ 369 (538)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444554444
No 407
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.02 E-value=97 Score=22.17 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC
Q 044988 37 FQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE 79 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 79 (538)
.++|+.....|+..|+.+|..++..+.-+=.++...++++.|-
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3889999999999999999999998877777777777777664
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.20 E-value=96 Score=28.76 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHH
Q 044988 380 EHYGCMVDLFSRAGLMDEAFSLVQNMP----MKP--NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALV 453 (538)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l 453 (538)
..|.-=..-|.+..++..|...|.+-. -.| +.+.|+.-..+-...|++..|+.-..+. ..++|.+..+|. .=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~-R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYI-RG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhh-hh
Confidence 344445556667777777777776542 112 2455655555566677888888888877 888888877776 66
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 044988 454 ANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 454 ~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.++....++++|..+.++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 677777777777776666553
No 409
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.39 E-value=1.2e+02 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
-|..++..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888899999999999988876
No 410
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.76 E-value=1.3e+02 Score=26.70 Aligned_cols=87 Identities=16% Similarity=0.073 Sum_probs=56.8
Q ss_pred HHhhhcCChHHHHHHHHhCC---------CCCCHHHHHH-----------HHHHHHhcCCHHHHHHHHHHchhccCCCCc
Q 044988 387 DLFSRAGLMDEAFSLVQNMP---------MKPNDAVLGS-----------LLLGCRIHNNAELASQVAQKLVAEIDPEQA 446 (538)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~-----------l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~ 446 (538)
+-+.+.|++.+|..-|++.. .+|...-|-. .-.++...|++-++++....+ ....|.+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei-L~~~~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI-LRHHPGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH-HhcCCchH
Confidence 33445666666665555431 3444433322 223345677888888888888 88888888
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 447 AGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+|. .-+.+.+..=+.++|.+=|.+..+
T Consensus 265 KA~f-rRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYF-RRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHH-HHHHHHHhhcCHHHHHHHHHHHHh
Confidence 8777 777777777677788877777765
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.11 E-value=37 Score=29.49 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=29.5
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+.++.+.|.++++++ .++-|+....|. .++..-.+.|+++.|.+.+++..+
T Consensus 6 ~~~~D~~aaaely~qa-l~lap~w~~gwf-R~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQA-LELAPEWAAGWF-RLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHH-hhcCchhhhhhh-hcchhhhhcccHHHHHHHHHHHHc
Confidence 3445555555555555 555555555555 555555555566555555555554
No 412
>PRK10941 hypothetical protein; Provisional
Probab=45.58 E-value=96 Score=28.11 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
..+.|-.+|.+.++++.|++..+.+. ..|+ ..-+.--.-.|.+.|.+..|..-++.. .+..|+++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~f-l~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYF-VEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHhCCCchh
Confidence 45667778889999999999998874 4455 555666666789999999999999988 888898887
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.49 E-value=40 Score=30.67 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=26.7
Q ss_pred CCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 044988 115 EPDEYT-YSFLLSVCARCGLFREGEQVHGRVLASGYC 150 (538)
Q Consensus 115 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 150 (538)
.|+..+ |+..|....+.||+++|+.++++..+.|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344443 567888888888888888888888888843
No 414
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.47 E-value=2e+02 Score=30.76 Aligned_cols=177 Identities=12% Similarity=0.151 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHH
Q 044988 231 NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEE 310 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 310 (538)
++++++++.+.+...--| .++|..+.+.|.++-|..+.+ +..+ -......+|+.+.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVk-------------D~~t---RF~LaLe~gnle~ 661 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVK-------------DERT---RFELALECGNLEV 661 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeec-------------Ccch---heeeehhcCCHHH
Confidence 467777777665543222 234445566777766654322 1111 1234567899999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhh
Q 044988 311 AYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFS 390 (538)
Q Consensus 311 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 390 (538)
|.+.-.++-++ ..|..|+..-.+.| +.+-|+..|+..+ .|+-|--.|.
T Consensus 662 ale~akkldd~--d~w~rLge~Al~qg--------------------n~~IaEm~yQ~~k----------nfekLsfLYl 709 (1202)
T KOG0292|consen 662 ALEAAKKLDDK--DVWERLGEEALRQG--------------------NHQIAEMCYQRTK----------NFEKLSFLYL 709 (1202)
T ss_pred HHHHHHhcCcH--HHHHHHHHHHHHhc--------------------chHHHHHHHHHhh----------hhhheeEEEE
Confidence 99888877554 45666666666665 5556666666543 2334444566
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 391 RAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
-.|+.++-.++-+....+.|..+. .....-.|+.++=.++++.. +..| -+|. .-...|.-++|.++.
T Consensus 710 iTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~--g~~~---layl-----ta~~~G~~~~ae~l~ 776 (1202)
T KOG0292|consen 710 ITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENG--GQLP---LAYL-----TAAAHGLEDQAEKLG 776 (1202)
T ss_pred EeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhc--Cccc---HHHH-----HHhhcCcHHHHHHHH
Confidence 677777766666555444443321 12223346777777777765 1111 1132 123456667777777
Q ss_pred HHHHhC
Q 044988 471 QKMIKM 476 (538)
Q Consensus 471 ~~m~~~ 476 (538)
++....
T Consensus 777 ee~~~~ 782 (1202)
T KOG0292|consen 777 EELEKQ 782 (1202)
T ss_pred Hhhccc
Confidence 776653
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.11 E-value=1.2e+02 Score=30.94 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC------CChHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPH------RNVVSWTTMISGCAQNGKSR------QALSLFNEMRRARVGLDQVALVAA 259 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 259 (538)
+|..+|...|++..+.++++.... .=...||..|+...++|.++ .|.++++. ..+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 566777777777777777766542 11235677777777777543 22223222 2355666777766
Q ss_pred HHHHHc
Q 044988 260 LSACAE 265 (538)
Q Consensus 260 i~~~~~ 265 (538)
+++...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 416
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.69 E-value=4.1e+02 Score=28.13 Aligned_cols=170 Identities=11% Similarity=0.162 Sum_probs=95.9
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCC---chhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcC
Q 044988 125 LSVCARCGLFREGEQVHGRVLASGYCS---NVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRG 201 (538)
Q Consensus 125 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 201 (538)
++-+.+.+.+++|..+.+.... ..| -..+...++..+.-.|+ +++|-...-.|...+..-|.-.+.-+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~---y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGK---YDEAASLCPKMLGNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcch---HHHHHhhhHHHhcchHHHHHHHHHHhcccc
Confidence 4455566667777666554432 233 24466777788888888 888888877777777777777776666666
Q ss_pred CHHHHHHHHccCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 044988 202 DIDGAWKIFDEMPH-RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVE 280 (538)
Q Consensus 202 ~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 280 (538)
+......++=.-+. -+...|..++..+.. .+ ...+++...+ .+++...-..++++ ...++.
T Consensus 438 ~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~--Wp~~Lys~l~iisa------------~~~q~~ 499 (846)
T KOG2066|consen 438 QLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKE--WPGHLYSVLTIISA------------TEPQIK 499 (846)
T ss_pred ccchhhccCCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHh--CChhhhhhhHHHhh------------cchHHH
Confidence 65443333322221 345578777777766 22 2222222222 22222222222221 111222
Q ss_pred HhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCc
Q 044988 281 ENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNT 323 (538)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 323 (538)
+. .. +...-..|+..|...++++.|..++-....+++
T Consensus 500 q~-----Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 500 QN-----SE-STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hh-----cc-chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 21 11 112224588889999999999999988876543
No 417
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.19 E-value=1.4e+02 Score=23.99 Aligned_cols=64 Identities=8% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 104 YLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 104 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
++.+.+++.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566677666543 345666677777778899999999988766666555555666666664
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.12 E-value=2.4e+02 Score=25.35 Aligned_cols=128 Identities=8% Similarity=0.047 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPH---------RNVVSWTTMISGCAQNGKSRQALSLFNEMRR-----ARVGLDQVALV 257 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 257 (538)
-++..+.+.|++++....+.++.. -+..+.|.++..-+...+.+--..+|+.-.. .+-+.-..|-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555666666666666665531 2233455555544444444433333332211 01122223334
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhccCCCCCc-------chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 258 AALSACAEIGDLKLGKWIHSYVEENFSVGREPV-------LVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 258 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
.+...|...+.+.....++..+.+.+....... -..+|..=+..|....+-.....++++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 566667777777777777777776654322222 23445555667777777677777776554
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.52 E-value=17 Score=35.21 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHH-HHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGC-MVDLFSRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIHNN 426 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 426 (538)
++.....++++.|..++.++++. .||...|-. =..++.+.+++..|+.=+... ...|. ...|..=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 45566778999999999999965 787554433 347889999999887666554 34454 3344444456777888
Q ss_pred HHHHHHHHHHchhccCCCCcc
Q 044988 427 AELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+.+|+..|+.. ..+.|+++.
T Consensus 88 ~~~A~~~l~~~-~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKV-KKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHh-hhcCcCcHH
Confidence 99999999999 999999988
No 420
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=43.06 E-value=4.1e+02 Score=27.70 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=32.3
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCC--c--chhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREP--V--LVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
-.+++..+......+.+.....+.+ . ....+....-.+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4688888998888887763211111 1 12222233334456799999999997
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.02 E-value=69 Score=32.10 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHccC--ChhHHHHHHhcCCCCCcchHHHH--HHHHh-cCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 044988 50 QKNYILAKLLAFYVTSG--YLINAHKVFEKTENPSTAIWNQM--IRGHA-RSETPEKSVYLYKQMIDKETEPDEYTYSFL 124 (538)
Q Consensus 50 ~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~l--i~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 124 (538)
|+..+...++.-....- ..+-+-.+|-.|.+|+...|-+| ...|. -.|+...|..++.......-.-.-+....|
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~l 648 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNL 648 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHH
Confidence 45555555555444332 23446667777777777766543 23344 468899999988777643212233456666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHH
Q 044988 125 LSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLK 195 (538)
Q Consensus 125 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~ 195 (538)
...+.+.|....|-.++.+.+... ....-++..+.++|....+ ++.|++.|++..+. +.+.-+.|..
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~---i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKN---ISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhh---hHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 677777777778888887777665 4555677778888888888 88888888776543 3344444443
No 422
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.89 E-value=53 Score=17.40 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
|+.+.+..+|+.+... .|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-----~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-----FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-----CCCChHHHHHHHH
Confidence 3456666777776665 5566666655443
No 423
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=42.78 E-value=36 Score=25.50 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCccc
Q 044988 506 ASLIYKTLGEITMQAMQEGYKPDISEL 532 (538)
Q Consensus 506 ~~~~~~~l~~~~~~m~~~~~~p~~~~~ 532 (538)
....+..=..+.++|+.+||+|+..|.
T Consensus 47 ~~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 47 PYKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 344455555678899999999999886
No 424
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.80 E-value=91 Score=20.95 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 214 PHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 214 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
..|....++.++..++...-.++++..+.++.+.|. .+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345667788888888888888999999999988875 466666666655544
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.38 E-value=5.5e+02 Score=28.74 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=103.7
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHh---------cCCcc----HHHHHHHHHHHHhcccCcHHHHHH
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAK---------QGYAQ----EALLTFLGVLSACSHGGFVDEGRQ 364 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~---------~~~~~----~a~~~~~~ll~~~~~~~~~~~a~~ 364 (538)
+..+|..+|...+|...|.+.... ...++.|-..-.. .|+.- .|+..|..++..+...+..+.+.+
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444577888999999999887541 1222222221111 12211 134678888888888899999888
Q ss_pred HHHHhhhhcCC-Ccc-HHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH----------
Q 044988 365 FFECMNQNWGI-KPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPND----AVLGSLLLGCRIHNNAE---------- 428 (538)
Q Consensus 365 ~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~---------- 428 (538)
+-...++..+. .|. ..+++.+.......|.+-+|...+-.- ||. ...+.++.....+|..+
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 88877764221 122 456788888888899998888777653 453 34566666667777654
Q ss_pred --HHHH-HHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 429 --LASQ-VAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 429 --~A~~-~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
+... +++.. ....|-...-|..+|-..+...++|.+|..++
T Consensus 1082 ~~eve~~l~esa-aRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1082 EQEVEDFLRESA-ARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHH-hhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3333 33333 33344333334437777777888888877654
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.83 E-value=1e+02 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
....+..-|.+.|++++|.++|+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344556666677777777777665
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.37 E-value=33 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 229 AQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
...|.-.+|.++|..|++.|-+||. ++.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3457778899999999999999984 4455543
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.19 E-value=1.2e+02 Score=30.95 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhc-CCCccHHHHHHHHHHhhhcCChH------HHHHHHHhCCCCCCHHHHHHHHHH
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNW-GIKPRIEHYGCMVDLFSRAGLMD------EAFSLVQNMPMKPNDAVLGSLLLG 420 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~l~~~ 420 (538)
+++.+|...|++.++.++++...... |-+.=...||..++-+.+.|.++ .|.++++.....-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67788888889999999999887542 11122557888888888888754 567777777777788888777766
Q ss_pred HHh
Q 044988 421 CRI 423 (538)
Q Consensus 421 ~~~ 423 (538)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 429
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.74 E-value=2.6e+02 Score=24.55 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 044988 385 MVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~ 405 (538)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 334444445555555555554
No 430
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=39.61 E-value=3.8 Score=30.14 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCcccCCccc
Q 044988 512 TLGEITMQAMQEGYKPDISEL 532 (538)
Q Consensus 512 ~l~~~~~~m~~~~~~p~~~~~ 532 (538)
+++.++++.+..|++|+.+.|
T Consensus 37 ~Ld~lr~EFk~~Gy~P~hsEv 57 (122)
T PF02334_consen 37 LLDELRSEFKPLGYRPNHSEV 57 (122)
T ss_dssp HHHHHHHHHTTTT----HHHH
T ss_pred HHHHHHHHhhhcCCCCCHHHH
Confidence 445566777777777777766
No 431
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=39.22 E-value=3.8e+02 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=11.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
..+.++.+.|+...+.-+...|..
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhcC
Confidence 344445555555544444444443
No 432
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.02 E-value=1.1e+02 Score=30.73 Aligned_cols=90 Identities=12% Similarity=-0.027 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHhhhhcCCCcc--HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQ 432 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~ 432 (538)
|+...|..++.... ...|- .+..-.|.+.+.+.|...+|-.++.+.. ....+.++-.+..++....+.++|++
T Consensus 621 gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 621 GNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred CCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 56666666665544 22342 2233445555555666666666554432 22334566666777777777777777
Q ss_pred HHHHchhccCCCCcccHH
Q 044988 433 VAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~ 450 (538)
.|+++ ....|+.+..-.
T Consensus 698 ~~~~a-~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 698 AFRQA-LKLTTKCPECEN 714 (886)
T ss_pred HHHHH-HhcCCCChhhHH
Confidence 77777 777777766333
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.01 E-value=1.3e+02 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCC
Q 044988 395 MDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKR 462 (538)
Q Consensus 395 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 462 (538)
.+.|.++.+-|. .....-.........|++..|.++.+.+ ....|++...-. +.+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l-~~adp~n~~ar~-l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHL-VFADPDNEEARQ-LKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHH-HHH-TT-HHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCcHHHHH-HHHHHHHHHHH
Confidence 345666666664 3333344455677889999999999999 888999888555 77777766553
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=1.4e+02 Score=26.27 Aligned_cols=22 Identities=0% Similarity=-0.315 Sum_probs=9.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 044988 223 TMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 223 ~li~~~~~~~~~~~a~~~~~~m 244 (538)
.-+.++.+..+++.+..--.+.
T Consensus 49 nralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 49 NRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred hHHHHHHHhhhhhhhhhhHHHH
Confidence 3344444444444444433333
No 435
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.66 E-value=65 Score=22.04 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=22.8
Q ss_pred CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcC
Q 044988 307 EIEEAYGVFRKMQR---RNTVSWTSMITGFAKQG 337 (538)
Q Consensus 307 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~ 337 (538)
+.+.|..++..+.. +.+..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 56778888887775 56778888877776665
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.43 E-value=2.4e+02 Score=23.76 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcC
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR-RNTVSWTSMITGFAKQG 337 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~ 337 (538)
..+..|.+.|.+++|.+++++... ++......-+....+..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 445678889999999999988765 44444444444444444
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.13 E-value=3.8e+02 Score=25.89 Aligned_cols=56 Identities=9% Similarity=-0.113 Sum_probs=40.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc--cCChHHHHHHHHHHHHh
Q 044988 226 SGCAQNGKSRQALSLFNEMRRARVGLDQV--ALVAALSACAE--IGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~~~~~~a~~~~~~~~~~ 282 (538)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999887 666554 45556666653 45677888888876664
No 438
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.84 E-value=6.2e+02 Score=28.00 Aligned_cols=236 Identities=10% Similarity=0.013 Sum_probs=97.1
Q ss_pred HHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch
Q 044988 74 VFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNV 153 (538)
Q Consensus 74 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 153 (538)
+.+.+..+++.+-...+..+.+.+.. .+...+....+ .++...-...+.++.+.+........+..++.. +|.
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~ 698 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDP 698 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCH
Confidence 33334455555555555555555432 23343434432 233333333333333332111111222222221 344
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCC
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGK 233 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 233 (538)
.+-...+.++...+. - ....+...+..+|...-...+.++.+.+..+. +.....+++...-...+.++...+.
T Consensus 699 ~VR~~A~~aL~~~~~---~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 699 VVRAAALDVLRALRA---G-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHHHhhcc---C-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 444444444443332 1 11223334444555555555555555443322 2223334555555555555555554
Q ss_pred HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 234 SRQ-ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 234 ~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
.+. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+.+ .++..+-...+.++.+.+..+...
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~-------d~d~~VR~~Aa~aL~~l~~~~a~~ 841 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR-------ASAWQVRQGAARALAGAAADVAVP 841 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc-------CCChHHHHHHHHHHHhccccchHH
Confidence 332 2333444433 34455555566666666654433222222222 122333344555555555433333
Q ss_pred HHHHhcCCCCcchHHHHHHHH
Q 044988 313 GVFRKMQRRNTVSWTSMITGF 333 (538)
Q Consensus 313 ~~~~~m~~~~~~~~~~li~~~ 333 (538)
.+...+..++...-...+.++
T Consensus 842 ~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 842 ALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 333333334443333333333
No 439
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.30 E-value=2e+02 Score=22.23 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHchhccCCCCcccHHH---HHHHHHHhcCChHHHHHHHHHH
Q 044988 413 VLGSLLLGCRIHNNAEL-------ASQVAQKLVAEIDPEQAAGYLA---LVANVYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 413 ~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~~p~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m 473 (538)
.+..|-.++...|++++ |+.+|++= -++..+....|.. .-+.++...|+.++|...|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33444445555665554 44455544 5666666655542 2234566788999998887654
No 440
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.11 E-value=1e+02 Score=22.30 Aligned_cols=29 Identities=7% Similarity=0.252 Sum_probs=15.1
Q ss_pred CHHHHHHHHccCCCCChHHHHHHHHHHHH
Q 044988 202 DIDGAWKIFDEMPHRNVVSWTTMISGCAQ 230 (538)
Q Consensus 202 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 230 (538)
+.+++..+++.++..+..+|..+..++..
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 44555555555555555555555555543
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.86 E-value=3.7e+02 Score=25.07 Aligned_cols=96 Identities=10% Similarity=0.183 Sum_probs=55.4
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHH---HhCCCCCC--HHHHHH-HHHHH----
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLV---QNMPMKPN--DAVLGS-LLLGC---- 421 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~p~--~~~~~~-l~~~~---- 421 (538)
+..+.|+..+|.+.|+.+.+...+..-..+-..|+.++....-+.+...++ +++.. |. ...|.+ |+.+-
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl-PkSA~icYTaALLK~RAVa~ 362 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL-PKSAAICYTAALLKTRAVSE 362 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-cchHHHHHHHHHHHHHHHHh
Confidence 344678999999999998876321111223456777777766666555555 44442 33 233432 33321
Q ss_pred -------HhcCC---HHHHHHHHHHchhccCCCCcccHH
Q 044988 422 -------RIHNN---AELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 422 -------~~~~~---~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
.+.|- -..|.+...++ .+++|..+. |.
T Consensus 363 kFspd~asrRGLS~AE~~AvEAihRA-vEFNPHVPk-YL 399 (556)
T KOG3807|consen 363 KFSPETASRRGLSTAEINAVEAIHRA-VEFNPHVPK-YL 399 (556)
T ss_pred hcCchhhhhccccHHHHHHHHHHHHH-hhcCCCCcH-HH
Confidence 22221 12456666666 899999888 55
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.82 E-value=3.1e+02 Score=24.24 Aligned_cols=58 Identities=10% Similarity=0.243 Sum_probs=42.3
Q ss_pred HHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044988 205 GAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACA 264 (538)
Q Consensus 205 ~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 264 (538)
.+..+|+-..+|.+.....++..+. .+++++|.+.+.++-+.|..|... .+.+++.+-
T Consensus 226 n~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 226 NQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred chhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 3456677667788887777877655 578999999999999999988643 344444443
No 443
>PRK14700 recombination factor protein RarA; Provisional
Probab=35.46 E-value=3.6e+02 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044988 221 WTTMISGCAQ---NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGD 268 (538)
Q Consensus 221 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 268 (538)
+--+|+++.+ ..|.+.|+-++.+|.+.|-.|....=..++-++..-|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3345666654 47899999999999999988877777777766665553
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.38 E-value=3.8e+02 Score=24.80 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHh----------cCCHHHHH
Q 044988 138 EQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVK----------RGDIDGAW 207 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~ 207 (538)
.++++.+...++.|.-..+.-+.-.+...=. +.++..+++.+... ..-|..++..||. .|++....
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~---lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFP---LPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCC---chhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4577777777888887777777777777666 77788887776642 2225555544432 46666666
Q ss_pred HHHccCCCCChHH
Q 044988 208 KIFDEMPHRNVVS 220 (538)
Q Consensus 208 ~~~~~m~~~~~~~ 220 (538)
++++.-+.-|+..
T Consensus 339 kLLQ~yp~tdi~~ 351 (370)
T KOG4567|consen 339 KLLQNYPTTDISK 351 (370)
T ss_pred HHHhcCCCCCHHH
Confidence 6666555444433
No 445
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.11 E-value=1.4e+02 Score=19.77 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
+.+.|++-+|-++++.+-.....|....+..+|..
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 44577788888888777543223344444444443
No 446
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.99 E-value=4.9e+02 Score=25.93 Aligned_cols=103 Identities=12% Similarity=-0.095 Sum_probs=70.6
Q ss_pred HHHhcCCHHHHHHHHccCC---CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH---
Q 044988 196 GYVKRGDIDGAWKIFDEMP---HR---------NVVSWTTMISGCAQNGKSRQALSLFNEMRR-------ARVGLDQ--- 253 (538)
Q Consensus 196 ~~~~~g~~~~A~~~~~~m~---~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~--- 253 (538)
.+.-.|++.+|.+++.... ++ .-..||.|...+.+.|.+.-+..+|....+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456799999999886643 11 122467777666777777777777666653 4665532
Q ss_pred --------HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh
Q 044988 254 --------VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS 304 (538)
Q Consensus 254 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (538)
.+|+.- -.+...|++-.|.+.|....+. +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-----fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-----FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHH
Confidence 223322 2466889999999999999887 77788889888887763
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.95 E-value=4.4e+02 Score=25.44 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=38.0
Q ss_pred HHHhcCCCchHHHHHHHHhHhCCCCCCcc--hHHHHHHHH--HccCCcHHHHHHHHHHHHh
Q 044988 91 RGHARSETPEKSVYLYKQMIDKETEPDEY--TYSFLLSVC--ARCGLFREGEQVHGRVLAS 147 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~--~~~~~~~~a~~~~~~~~~~ 147 (538)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999998876 555554 344444443 3456777888888877654
No 448
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=33.90 E-value=6.6e+02 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=16.9
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCCcchH--HHHHHHHHccCCcH
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPDEYTY--SFLLSVCARCGLFR 135 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~ 135 (538)
+..|+.+ +++.+.+.|..||.... .+.+...+..|..+
T Consensus 533 a~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~ 572 (823)
T PLN03192 533 ASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572 (823)
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 3455543 34444455555544321 23333344455544
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.46 E-value=3.4e+02 Score=24.01 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=45.1
Q ss_pred CCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 374 GIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP---------------MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
+++-+..-..+++ +...|+...|+.-++.-. -.|.+.....++..|.. +++++|.+++.++-
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 3443433333333 456777777777766431 35888888888877764 78999999999984
Q ss_pred -hccCCCC
Q 044988 439 -AEIDPEQ 445 (538)
Q Consensus 439 -~~~~p~~ 445 (538)
.+..|.+
T Consensus 266 ~lgysp~D 273 (333)
T KOG0991|consen 266 KLGYSPED 273 (333)
T ss_pred HcCCCHHH
Confidence 5555554
No 450
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=33.44 E-value=6.4e+02 Score=27.11 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=17.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIII 45 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~ 45 (538)
.++-.|.++|+.+.|.++.+....
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456677788888888877776544
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.39 E-value=46 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 044988 82 STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVC 128 (538)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 128 (538)
....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 334445555555555455555555555555542 3333443333333
No 452
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.37 E-value=2.1e+02 Score=21.59 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=9.0
Q ss_pred CcHHHHHHHHHHHHhC
Q 044988 133 LFREGEQVHGRVLASG 148 (538)
Q Consensus 133 ~~~~a~~~~~~~~~~~ 148 (538)
..++|..+.+.+...+
T Consensus 21 cH~EA~tIa~wL~~~~ 36 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG 36 (116)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4566666666665544
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.20 E-value=1e+02 Score=23.42 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhH
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLIN 70 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 70 (538)
.++..+...+..-.|.++++.+.+.+...+..+.-..++.+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4667777777778899999999998877788777777888888876543
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.17 E-value=2.4e+02 Score=22.67 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=37.1
Q ss_pred HhHhCCCCCCcchHHHHHHHHHcc-CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 108 QMIDKETEPDEYTYSFLLSVCARC-GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 108 ~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
.+.+.|+.++..- ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3455666555433 3344444443 4567888888888888766666665556666666665
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.00 E-value=4e+02 Score=24.66 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh----------CCC
Q 044988 238 LSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS----------CGE 307 (538)
Q Consensus 238 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~ 307 (538)
.++++.|.+.++.|.-+.|..+.-.+.+.=.+.....+|+.+... ... +..|+..||. .|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~r-----fd~Ll~iCcsmlil~Re~il~~D 333 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQR-----FDFLLYICCSMLILVRERILEGD 333 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hhh-----hHHHHHHHHHHHHHHHHHHHhcc
Confidence 467888889999999999999888888888899999999988764 222 3445555553 477
Q ss_pred HHHHHHHHHhcCCCCcc
Q 044988 308 IEEAYGVFRKMQRRNTV 324 (538)
Q Consensus 308 ~~~a~~~~~~m~~~~~~ 324 (538)
+..-.++++.-..-|+.
T Consensus 334 F~~nmkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 334 FTVNMKLLQNYPTTDIS 350 (370)
T ss_pred hHHHHHHHhcCCCCCHH
Confidence 77777777665444443
No 456
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.92 E-value=3.1e+02 Score=23.35 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=56.5
Q ss_pred HccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc------
Q 044988 210 FDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENF------ 283 (538)
Q Consensus 210 ~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------ 283 (538)
.++-.+...+-|..+..+-++.-+.+++.+.|-- .+=.+++..|-+.-++.++..+++.+.+..
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L 168 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL 168 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3333333344455666665555555554433311 111244555666666777766666655431
Q ss_pred ----cCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 284 ----SVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 284 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
......+.-...|.....+.+.|..|.|..++++-
T Consensus 169 KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 169 KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 11123344455678888999999999999999853
No 457
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.61 E-value=1.5e+02 Score=20.82 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.5
Q ss_pred cCChhHHHHHHh
Q 044988 65 SGYLINAHKVFE 76 (538)
Q Consensus 65 ~g~~~~a~~~~~ 76 (538)
.|+++-...+++
T Consensus 7 ~~~~~~~~~ll~ 18 (89)
T PF12796_consen 7 NGNLEILKFLLE 18 (89)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 333333333333
No 458
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.11 E-value=4e+02 Score=24.41 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
-.++..+...++..++..+++..-.+++...... .+...+...|..+++.....|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~---~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPN---SVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhccc---CCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555555555555555555544443332 1233444455555555555555555555443
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.31 E-value=2.1e+02 Score=23.78 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 232 GKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
++.-.|.++++.+.+.+..++..|.-..+..+..
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 460
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.31 E-value=53 Score=20.17 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCcccC
Q 044988 514 GEITMQAMQEGYKPD 528 (538)
Q Consensus 514 ~~~~~~m~~~~~~p~ 528 (538)
+++.+.+++.||.||
T Consensus 32 ~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 32 ERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHCCCCC
Confidence 345667888899997
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.83 E-value=2.8e+02 Score=22.29 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 242 NEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 242 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+.+.+.|++++..-. .++..+...++.-.|..+++.+.+. +.+.+..+.-.-++.+...|-
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~----~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE----GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh----CCCCCHhHHHHHHHHHHHCCC
Confidence 334445554443322 3344444444445556666666555 343333322234455555553
No 462
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=30.71 E-value=1.7e+02 Score=20.97 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=16.5
Q ss_pred CCHHHHHHHHccCCCCChHHHHHHHHHHHHcC
Q 044988 201 GDIDGAWKIFDEMPHRNVVSWTTMISGCAQNG 232 (538)
Q Consensus 201 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~ 232 (538)
...++|..+++.++..+..+|..+.+++...|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34455555555555555555555555554433
No 463
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.67 E-value=4.6e+02 Score=24.64 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhh------cCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHH
Q 044988 358 FVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSR------AGLMDEAFSLVQNMP-MKPND-AVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~ 429 (538)
-++++..++++.... + .|..+.....|.++-. .-+|.....+|+.+. ..|++ ++.|--+ +..+...++.
T Consensus 271 lI~eg~all~rA~~~-~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALAS-R-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHc-C-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH-HHHHhhhHHh
Confidence 466777888887765 3 3777777766665432 235777777777663 45664 3444433 3444556677
Q ss_pred HHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 430 ASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
++.+.+-+..+..-+....|...-++.+.+.|+.++|...|++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 8888877642222333343444788999999999999999999875
No 464
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.63 E-value=1.7e+02 Score=22.14 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044988 20 TRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYV 63 (538)
Q Consensus 20 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 63 (538)
-.+++..+.++...++|.++.+.|.++|-- +....+.|-..+.
T Consensus 64 ~PtViD~lrRC~T~EEALEVInylek~GEI-t~e~A~eLr~~L~ 106 (128)
T PF09868_consen 64 NPTVIDYLRRCKTDEEALEVINYLEKRGEI-TPEEAKELRSILV 106 (128)
T ss_pred CChHHHHHHHhCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 347888999999999999999999999833 4444444444433
No 465
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.45 E-value=3.6e+02 Score=26.35 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCc
Q 044988 406 PMKPND--AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQA 446 (538)
Q Consensus 406 ~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~ 446 (538)
..+|.. .++++.+..+.+.+++..|..+.+++ .++.|...
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRL-Lel~p~~~ 334 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRL-LELNPSPE 334 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHH-HCT--SCH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHcCCCHH
Confidence 345553 35566677788889999999999988 77777543
No 466
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.38 E-value=2.1e+02 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHhCCCHHHHHHHHHhcC
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
+.......|++++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455566666666655543
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.22 E-value=5.3e+02 Score=25.22 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044988 220 SWTTMISGCAQ---NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEI 266 (538)
Q Consensus 220 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 266 (538)
.+..+++++.+ .++.+.|+.++..|.+.|..|....-..++.++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555544 578999999999999999888765555555554433
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.20 E-value=4.3e+02 Score=24.18 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHch-----hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 411 DAVLGSLLLGCRIHNNAELASQVAQKLV-----AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
...+..+..-|++-++.+.+.+.+++.. .+.+-+..-+-. .|+-.|....-.++-++..+.|.++|-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~ki-Rlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKI-RLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHH-HHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4566677777888888888888777664 233333222122 445555555567777888888887765
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.11 E-value=97 Score=27.09 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=22.7
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 355 HGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
+.++.+.+.+++.+.. ++.|. ...|-.+...-.+.|+++.|.+.|++.
T Consensus 7 ~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 7 ESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred ccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 3444555555555444 22332 444555555445555555555554443
No 470
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.61 E-value=6.2e+02 Score=25.83 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=68.9
Q ss_pred cCcHHHHHHHHHHhhhhcCC---------Cc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-------------------
Q 044988 356 GGFVDEGRQFFECMNQNWGI---------KP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP------------------- 406 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------- 406 (538)
...++++...|......+.. .| -+.+.-.+..++-..|+.+-|..++++..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34455666666655543210 11 12334445556677777777666665431
Q ss_pred ---CCCC-HHHHHHH---HHHHHhcCCHHHHHHHHHHchhccCCC-CcccHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 044988 407 ---MKPN-DAVLGSL---LLGCRIHNNAELASQVAQKLVAEIDPE-QAAGYLALVANVYA-AAKRWQDVAAVRQKMI 474 (538)
Q Consensus 407 ---~~p~-~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~p~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 474 (538)
..|. ...|-++ +....+.|-+..|.+..+.+ ..+.|. ++-... .+++.|+ ++.+++=.+++++...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKll-lsLdp~eDPl~~l-~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLL-LSLDPSEDPLGIL-YLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhcCCcCCchhHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1122 2233332 33467788888888888888 888888 776566 6667765 5667777777776664
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.23 E-value=1.4e+02 Score=22.66 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDL 269 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 269 (538)
++..+...+..-.|.++++.+.+.+..++..|.-..+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566677888888888777777777776666666666643
No 472
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.15 E-value=3.2e+02 Score=23.82 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=33.2
Q ss_pred chHHHHHHHHhHhCCCCC----CcchHH-HHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 044988 99 PEKSVYLYKQMIDKETEP----DEYTYS-FLLSVCARCGLFREGEQVHGRVLASGYC 150 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p----~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~ 150 (538)
...|.+.|++..+..-.| +..+.. .+.....+.|+.++|.+.|..+...+-.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 456777777776543232 222333 3344567889999999999999887533
No 473
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.09 E-value=4.3e+02 Score=23.83 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHH
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR-VGL-----DQVALVAALSAC 263 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-----~~~~~~~li~~~ 263 (538)
|-.++-.|.+.=+...=..+|+....|. .++..|.+.|+.+.|-.++--+...+ ... +......++...
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 4444444555545555555666554332 56666777788887777776665432 222 334445566667
Q ss_pred HccCChHHHHHHHHHHHHh
Q 044988 264 AEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~ 282 (538)
...++++.+.++.+.+...
T Consensus 231 ~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 7778888888777777665
No 474
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.96 E-value=6.5e+02 Score=25.85 Aligned_cols=117 Identities=8% Similarity=-0.088 Sum_probs=53.5
Q ss_pred hccCChHHHHHHHHHHHH-------hCCCCChhHHHHHHHHHHccC-----ChhHHHHHHhcCCC-CCcchHHHHHHHHh
Q 044988 28 QIRNTTKTLFQIHSQIII-------NGFSQKNYILAKLLAFYVTSG-----YLINAHKVFEKTEN-PSTAIWNQMIRGHA 94 (538)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 94 (538)
+..+|++.|...+....+ .| .+.....+..+|.+.. +...|..++...-. .++..--.+...+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYE 336 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 344566666666666655 33 2334444555555532 34446666654332 11211111222221
Q ss_pred c---CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHH--ccCCcHHHHHHHHHHHHhC
Q 044988 95 R---SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCA--RCGLFREGEQVHGRVLASG 148 (538)
Q Consensus 95 ~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~ 148 (538)
. ..+...|.++|...-+.|. +...-+..++-... ...+...|..++.+..+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 1 1345667777766666552 22222222221111 2235566666666666665
No 475
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.90 E-value=6.3e+02 Score=25.69 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCccHHHHH
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ-RRNTVSWTSMITGFAKQGYAQEALLT 345 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~ 345 (538)
..+..|.-.+..+.+....++.++....| .+|+..-+..- ...+..|..+...|.+.+++.+|+..
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~-------------~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~ 340 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELF-------------NEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRS 340 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHH-------------HHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHH-------------HHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHH
Confidence 34555666666666653333333333333 22222222222 24566777788888888888888876
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
|........+-+--.+=+++|+++.+
T Consensus 341 Wa~aa~Vi~~YnY~reDeEiYKEfle 366 (618)
T PF05053_consen 341 WAEAADVIRKYNYSREDEEIYKEFLE 366 (618)
T ss_dssp HHHHHHHHTTSB--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHcccCccHHHHHHHHHH
Confidence 66655554444333444455555543
No 476
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.42 E-value=6.7e+02 Score=25.79 Aligned_cols=65 Identities=9% Similarity=-0.057 Sum_probs=37.6
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHH--H-HHccCCcHHHHHHHHHHHH-------hCCCCchhHHhHHHHHHHhcC
Q 044988 99 PEKSVYLYKQMIDKETEPDEYTYSFLLS--V-CARCGLFREGEQVHGRVLA-------SGYCSNVFIRTNLMNLYLMSG 167 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p~~~~~~~li~--~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g 167 (538)
...|.++++...+.|. ........++. + +....|++.|..+++...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567888888777652 22221222222 2 3456688888888888877 44 3334555666666544
No 477
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.21 E-value=3.1e+02 Score=21.86 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhc-cCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 409 PNDAVLGSLLLGCRIHN---NAELASQVAQKLVAE-IDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 409 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
+...+--.+..++.+.. +.++.+.+++.+ .+ -.|....-+.-.|+-++.+.|+++.++++.+.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l-~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDL-LKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHH-hhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44444445555655544 566778888888 54 5555544344367778888899999998888887654
No 478
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.58 E-value=6.4e+02 Score=25.29 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHH-HhCCCCChhHHHHHHHHHHccCChhHHHHHHhc
Q 044988 36 LFQIHSQII-INGFSQKNYILAKLLAFYVTSGYLINAHKVFEK 77 (538)
Q Consensus 36 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 77 (538)
....+.... +.|+..+..+...++... .|+...++..++.
T Consensus 181 l~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~ 221 (472)
T PRK14962 181 IIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 333444433 446666666666665532 4666667666654
No 479
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.55 E-value=3e+02 Score=21.50 Aligned_cols=41 Identities=27% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHH
Q 044988 430 ASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQ 471 (538)
Q Consensus 430 A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 471 (538)
..++|..|. .++.......|. ..+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe-~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYE-EWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHH-HHHHHHHHcCCHHHHHHHHH
Confidence 445566654 444444555455 67777778888888888775
No 480
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.93 E-value=5.1e+02 Score=23.98 Aligned_cols=111 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHccCChhHHHHHHhcCC-CCCcchHHHHHHHHhcCCCchHHHHHHH
Q 044988 33 TKTLFQIHSQIIINGF----SQKNYILAKLLAFYVTSGYLINAHKVFEKTE-NPSTAIWNQMIRGHARSETPEKSVYLYK 107 (538)
Q Consensus 33 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 107 (538)
...+.+.+......+. ..++.....++....+.|..+.-..+++... .++...-..++.+++-..+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Q ss_pred HhHhCCCCCCcchHHHHHHHH-HccCCcHHHHHHHHH
Q 044988 108 QMIDKETEPDEYTYSFLLSVC-ARCGLFREGEQVHGR 143 (538)
Q Consensus 108 ~m~~~~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~ 143 (538)
.....+..++......+.... ......+.+.+.+..
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 481
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.17 E-value=1.3e+02 Score=16.86 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHhhhhcCCCccHHHHHHHH
Q 044988 358 FVDEGRQFFECMNQNWGIKPRIEHYGCMV 386 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 386 (538)
.++.|..+|+..... .|++.+|-...
T Consensus 2 E~dRAR~IyeR~v~~---hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV---HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh---CCCchHHHHHH
Confidence 467888888888754 57777665443
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.88 E-value=1.1e+02 Score=23.44 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=37.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhH
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLIN 70 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 70 (538)
..++..+...+..-.|.++++.+.+.+...+..+.-..++.+...|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 45677777777788899999999998888888766677788888875443
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.87 E-value=1e+03 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=13.5
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 044988 228 CAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~ 246 (538)
|...|..-+|++.|.+...
T Consensus 930 yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred eecCCchHHHHHHHHHHhh
Confidence 5566777888888877643
No 484
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.80 E-value=2.4e+02 Score=20.11 Aligned_cols=60 Identities=5% Similarity=0.103 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCch
Q 044988 37 FQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPE 100 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 100 (538)
..+++.+.+.|+- +..... ...+...+.+.+.++++.++......|..+..++-..|...
T Consensus 19 ~~v~~~L~~~~Vl-t~~~~e---~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGVF-TPDMIE---EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCCC-CHHHHH---HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3456666666533 222221 22234455666777777776666677777777666655443
No 485
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.59 E-value=1.3e+02 Score=23.14 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044988 223 TMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGD 268 (538)
Q Consensus 223 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 268 (538)
.++..+...+.+-.|.++++.+.+.+...+..|.-..+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555566666677778888888877777777766666666655553
No 486
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.42 E-value=5.1e+02 Score=23.99 Aligned_cols=159 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---------CCCcchHHHHHHHHhcCCCchHHHHHHHHhHh
Q 044988 41 SQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---------NPSTAIWNQMIRGHARSETPEKSVYLYKQMID 111 (538)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 111 (538)
+.+++.|+. ......+...|....+.+.....+++.. +|+..+-......+...|--+-..-.=.++-.
T Consensus 174 d~LVkeGi~--l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~ 251 (412)
T KOG2297|consen 174 DNLVKEGIA--LSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE 251 (412)
T ss_pred hhHHHHhHH--HHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHH
Q 044988 112 KETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWN 191 (538)
Q Consensus 112 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~ 191 (538)
..-...-..|..-..+...+++......+-.+..--|+..+...+=++...... +.+-.++..+-.-+...+|.
T Consensus 252 ---~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsave---WnKkeelva~qalrhlK~ya 325 (412)
T KOG2297|consen 252 ---GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVE---WNKKEELVAEQALRHLKQYA 325 (412)
T ss_pred ---HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHh---hchHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHhcCCHHHHH
Q 044988 192 SLLKGYVKRGDIDGAW 207 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~ 207 (538)
-|+.+++..|+.+..+
T Consensus 326 PLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 326 PLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHhcCChHHHHH
No 487
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.32 E-value=3.3e+02 Score=21.22 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 044988 236 QALSLFNEMRRARVGLD-QVALVAALSACAEIGDLKLGKWIH 276 (538)
Q Consensus 236 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 276 (538)
++.++|..|...|+--. +..|..-...+...|++++|..++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56666666655544332 222333333333444444444444
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.21 E-value=3.4e+02 Score=22.50 Aligned_cols=58 Identities=5% Similarity=-0.110 Sum_probs=28.6
Q ss_pred HhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 110 IDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 110 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+..|+.++..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344444433322 3333333334445566666666666555555544445555555555
No 489
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.06 E-value=5.8e+02 Score=23.92 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHh---CCCHHH
Q 044988 234 SRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYAS---CGEIEE 310 (538)
Q Consensus 234 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 310 (538)
.+.-+.+|+++.+.+ +-+..-....+..+.+..+.+...+.++.+... .|.+...|...++.... .-.++.
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhccCcHHH
Confidence 456777888877762 245556667777788888888888888888886 77788888877776654 234667
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHh-------cCC-ccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 311 AYGVFRKMQRRNTVSWTSMITGFAK-------QGY-AQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 311 a~~~~~~m~~~~~~~~~~li~~~~~-------~~~-~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
...+|.+..+. +-..... ... ....+.+|..+...+.++|..+.|..+++.+.+-.=..|.
T Consensus 121 ~~~~y~~~l~~-------L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 121 VRDVYEKCLRA-------LSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHH-------HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 77766654320 0000000 000 1111255666667777889999999999988876323454
No 490
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.95 E-value=1.2e+02 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=32.4
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 390 SRAGLMDEAFSLVQNM-PMKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 390 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.+.|+.++|..+|+.. ...|+ .....-+....-..++.-+|-+++-++ ..+.|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A-LtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA-LTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee-eeeCCCchH
Confidence 3567777777777654 23343 233333333344445666666777666 666776655
No 491
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.75 E-value=4e+02 Score=26.91 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCC-C-CCcc---hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCC
Q 044988 55 LAKLLAFYVTSGYLINAHKVFEKTE-N-PSTA---IWNQMIRGHARSETPEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 55 ~~~l~~~~~~~g~~~~a~~~~~~~~-~-~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 116 (538)
...|+.-|.+.+++++|..++..|. . .... +.+.+.+.+.+..-..+....++.+...-..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 3456778889999999999988876 1 1122 33444555666655566666666666544434
No 492
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.71 E-value=6.7e+02 Score=24.54 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHH--------HHhCCCHHHHHHHHHhc
Q 044988 247 ARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHM--------YASCGEIEEAYGVFRKM 318 (538)
Q Consensus 247 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~m 318 (538)
..+.||.++.+.+...++..-..+-...+|+.-.+. +.|--+... +|+-. -.+...-+++.++++.|
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq----aDPF~vffL-aliiLiNake~ILq~~sdsKEe~ikfLenm 251 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ----ADPFLVFFL-ALIILINAKEEILQVKSDSKEEAIKFLENM 251 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----CCceehHHH-HHHHhcccHHHHhhhccccHHHHHHHHHcC
Confidence 458888888888888777777788888888888777 555444433 22211 12344568888888888
Q ss_pred CC----CCcchHHHHHHHHH
Q 044988 319 QR----RNTVSWTSMITGFA 334 (538)
Q Consensus 319 ~~----~~~~~~~~li~~~~ 334 (538)
.. .|+.-+-+|...|+
T Consensus 252 p~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 252 PAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred chhcccccchhHHHHHHHHh
Confidence 75 35555555555544
No 493
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.28 E-value=2.4e+02 Score=19.84 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhC
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIING 47 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 47 (538)
.+++..+.++...++|.++.+.+.+.|
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 377888888888999999999999888
No 494
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.20 E-value=6.7e+02 Score=24.39 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044988 216 RNVVSWTTMISGCAQ---NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIG 267 (538)
Q Consensus 216 ~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 267 (538)
++...+--+|+++.+ ..+.+.|+.++-+|.+.|-.|-...-..++-++..-|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 455566667777765 4789999999999999997776555555554444433
No 495
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=24.18 E-value=1.5e+02 Score=16.98 Aligned_cols=14 Identities=7% Similarity=-0.061 Sum_probs=6.2
Q ss_pred HHHhcCCHHHHHHH
Q 044988 420 GCRIHNNAELASQV 433 (538)
Q Consensus 420 ~~~~~~~~~~A~~~ 433 (538)
.+-..|++++|+.+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34444455555554
No 496
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.99 E-value=4.3e+02 Score=24.70 Aligned_cols=161 Identities=9% Similarity=0.129 Sum_probs=81.6
Q ss_pred HHHHccCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc
Q 044988 207 WKIFDEMPHRNVV-SWTTMISGCAQNGKSRQALSLFNEMRRA-RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFS 284 (538)
Q Consensus 207 ~~~~~~m~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 284 (538)
..+..+.++++.. ++|.+++...... +++...++....+. --.|+..|-.. ..+++..+-...+
T Consensus 52 c~v~~k~~ekdle~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l-------------~L~vLsnLfn~~d 117 (378)
T KOG2753|consen 52 CDVLAKIPEKDLECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASL-------------RLQVLSNLFNGVD 117 (378)
T ss_pred hHHhhcCCcchHHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccCCCccc-------------HHHHHHHHHhccC
Confidence 3444555666665 4555555444444 77777777665542 11232222111 1111111111100
Q ss_pred CCCCCcchhHHHHHHHHHHhCCCHH-------HHHHHHHhcCCC--Ccc-hHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 044988 285 VGREPVLVSLNNALIHMYASCGEIE-------EAYGVFRKMQRR--NTV-SWTSMITGFAKQGYAQEALLTFLGVLSACS 354 (538)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~-------~a~~~~~~m~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~ll~~~~ 354 (538)
...|....+|..++....+++-++ .....|.+-.-+ +-. .+..+-.++......+++...+..++..|.
T Consensus 118 -~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 118 -KPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred -CCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 023344567777888877776543 334444433221 222 334444566666668888888888888887
Q ss_pred ccC---cHHHHHHHHHHhhhhcCCCccHHHHHHHH
Q 044988 355 HGG---FVDEGRQFFECMNQNWGIKPRIEHYGCMV 386 (538)
Q Consensus 355 ~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 386 (538)
..+ --+.|.++..+... .|+.+.+..|+
T Consensus 197 ~dnas~AredA~rcV~~av~----dP~~F~fD~Ll 227 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVK----DPKIFLFDHLL 227 (378)
T ss_pred ccchhHHHHHHHHHHHHHHc----CCceeccchhc
Confidence 665 23344444444443 56666555443
No 497
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=23.68 E-value=6.9e+02 Score=24.38 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=64.9
Q ss_pred HHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHch
Q 044988 365 FFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHN------NAELASQVAQKLV 438 (538)
Q Consensus 365 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~ 438 (538)
+|..+.+. .+.||...+.-+...|.+.=-++-|.++|+-....-+.+.+...+..+.--. |+....+.+-+.
T Consensus 461 L~~Hl~kl-~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklyepkLl~mDf~~~~qfLtkl- 538 (586)
T KOG2223|consen 461 LFTHLKKL-ELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYEPKLLVMDFIHVAQFLTKL- 538 (586)
T ss_pred HHHHHHhc-cCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHccchHhhhhHHHHHHHHHhC-
Confidence 34444433 8899999999999999999999999999988765667777777766654332 344444444443
Q ss_pred hccCCCCccc---HHH-HHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 439 AEIDPEQAAG---YLA-LVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 439 ~~~~p~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
|.+.+. |.. .-.....+.++|.+..+-+++=...|
T Consensus 539 ----p~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~kd~~eg 577 (586)
T KOG2223|consen 539 ----PEDLTPEELFMHIAYIQMQSRSKKWSQVFQEIDKDVNEG 577 (586)
T ss_pred ----cccCCHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccc
Confidence 443331 110 11223345566666555544433333
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.58 E-value=1.1e+03 Score=26.81 Aligned_cols=131 Identities=8% Similarity=-0.015 Sum_probs=77.0
Q ss_pred ccccHHHHHHHHhccCChHHHHH------HHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---C------
Q 044988 16 KALTTRQIFSLLQIRNTTKTLFQ------IHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---N------ 80 (538)
Q Consensus 16 ~~~~~~~ll~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~------ 80 (538)
++.-+..--..+...+.+.++.+ +++.....-.+.....|..|...+-+.|+.++|+..-.... +
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 33333344444555666666666 55544443344566788888888889999999988765432 1
Q ss_pred -C-CcchHHHHHHHHhcCCCchHHHHHHHHhHhC-----CC-CC-CcchHHHHHHHHHccCCcHHHHHHHHHHHH
Q 044988 81 -P-STAIWNQMIRGHARSETPEKSVYLYKQMIDK-----ET-EP-DEYTYSFLLSVCARCGLFREGEQVHGRVLA 146 (538)
Q Consensus 81 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 146 (538)
| +...|..+.-.....++...|...+.+.+.. |- .| ...+++.+-..+-..++++.|.++++....
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 2234555554445566777777777766532 11 23 333444444444455777888887777765
No 499
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=23.31 E-value=63 Score=19.82 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=27.8
Q ss_pred cccCCCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHH
Q 044988 5 EIIPANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQII 44 (538)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 44 (538)
.++..+..+|.....+..+...+...+....+..+++...
T Consensus 3 ~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 3 NDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3456788888888888888888887777666666666543
No 500
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.27 E-value=3.6e+02 Score=20.94 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHH----HHHHhcCCHHHHHHHHHHc
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNM-------P-MKPN-DAVLGSLL----LGCRIHNNAELASQVAQKL 437 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~----~~~~~~~~~~~A~~~~~~~ 437 (538)
|..++..|..++...|++++++.--+.. . ...| ...|-..+ .++...|+.++|+..|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3456778888999999988765544332 1 3333 34454333 3467789999999988876
Done!