Query 044988
Match_columns 538
No_of_seqs 553 out of 3304
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 15:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.6E-38 1.2E-42 322.8 34.8 446 15-476 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.1E-35 2.1E-39 298.9 32.0 428 16-458 116-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-26 5.9E-31 222.8 36.1 369 26-462 8-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 4.6E-28 1.6E-32 237.7 18.5 200 37-266 10-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-27 4E-32 234.8 20.9 188 84-305 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-25 5E-30 216.3 34.5 348 91-475 7-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 8E-23 2.7E-27 204.9 31.2 424 19-476 8-478 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.8E-26 197.0 32.1 420 17-476 25-491 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 2.9E-21 9.7E-26 190.2 32.2 348 83-473 26-406 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.2E-25 185.6 29.5 306 12-331 21-371 (450)
11 2gw1_A Mitochondrial precursor 99.9 5.2E-20 1.8E-24 184.4 26.3 390 52-476 6-444 (514)
12 3fp2_A TPR repeat-containing p 99.8 4.7E-19 1.6E-23 178.5 24.0 384 52-476 25-457 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 9.9E-18 3.4E-22 159.3 31.4 333 83-458 3-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.9E-17 1.3E-21 155.1 32.8 295 118-476 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 3.2E-18 1.1E-22 160.0 20.5 284 64-404 15-307 (449)
16 3hym_B Cell division cycle pro 99.8 2.9E-17 1E-21 154.1 27.4 84 378-463 235-321 (330)
17 1b89_A Protein (clathrin heavy 99.8 3.8E-18 1.3E-22 159.6 19.8 280 27-343 13-302 (449)
18 3hym_B Cell division cycle pro 99.8 3.9E-17 1.3E-21 153.3 26.5 275 49-333 19-314 (330)
19 2xm6_A Protein corresponding t 99.8 4.4E-16 1.5E-20 154.6 31.5 376 37-457 27-450 (490)
20 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.6E-20 150.4 37.3 404 19-475 15-491 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.8E-19 151.8 39.9 409 14-471 982-1440(1630)
22 2ooe_A Cleavage stimulation fa 99.7 3.3E-15 1.1E-19 149.9 31.9 380 4-444 36-495 (530)
23 1fch_A Peroxisomal targeting s 99.7 1.6E-16 5.4E-21 151.7 21.2 270 172-472 41-355 (368)
24 1fch_A Peroxisomal targeting s 99.7 2.4E-16 8.1E-21 150.5 21.8 271 62-343 35-350 (368)
25 2xm6_A Protein corresponding t 99.7 2.2E-14 7.4E-19 142.4 35.9 357 80-478 36-434 (490)
26 4eqf_A PEX5-related protein; a 99.7 2.6E-16 9.1E-21 150.0 21.2 242 217-476 64-310 (365)
27 4eqf_A PEX5-related protein; a 99.7 1.7E-16 6E-21 151.3 19.6 257 186-472 64-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 2.5E-15 8.7E-20 137.5 26.4 269 164-470 10-288 (291)
29 1xi4_A Clathrin heavy chain; a 99.7 5.4E-14 1.8E-18 146.8 38.1 403 18-469 938-1377(1630)
30 3mkr_A Coatomer subunit epsilo 99.7 6.2E-15 2.1E-19 135.0 27.5 248 194-476 6-264 (291)
31 4g1t_A Interferon-induced prot 99.7 5.2E-15 1.8E-19 146.3 26.3 381 51-486 50-469 (472)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4E-22 168.6 7.0 147 52-201 127-286 (1134)
33 3cv0_A Peroxisome targeting si 99.7 1.4E-15 4.7E-20 142.4 20.3 257 187-473 21-312 (327)
34 3cv0_A Peroxisome targeting si 99.7 2.6E-14 8.9E-19 133.7 25.5 271 15-320 19-314 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.9E-21 159.8 9.2 119 188-310 128-254 (1134)
36 4g1t_A Interferon-induced prot 99.6 7.5E-14 2.6E-18 138.0 25.5 382 16-450 50-468 (472)
37 3uq3_A Heat shock protein STI1 99.6 6.2E-14 2.1E-18 126.2 21.8 227 218-476 5-236 (258)
38 2pl2_A Hypothetical conserved 99.6 6.5E-14 2.2E-18 122.4 17.3 206 218-474 5-212 (217)
39 3u4t_A TPR repeat-containing p 99.6 6.4E-13 2.2E-17 120.7 22.3 241 189-459 5-267 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.5E-13 8.4E-18 123.6 19.3 238 199-470 17-269 (275)
41 2pl2_A Hypothetical conserved 99.5 2.7E-13 9.1E-18 118.5 16.3 207 81-319 3-212 (217)
42 3uq3_A Heat shock protein STI1 99.5 8E-13 2.7E-17 118.9 19.3 219 85-319 7-234 (258)
43 3e4b_A ALGK; tetratricopeptide 99.5 8.5E-12 2.9E-16 121.8 27.7 218 22-279 8-243 (452)
44 3u4t_A TPR repeat-containing p 99.5 2.4E-12 8.1E-17 116.9 21.3 125 54-184 5-136 (272)
45 3sf4_A G-protein-signaling mod 99.5 3.6E-12 1.2E-16 123.0 22.2 304 120-464 11-364 (406)
46 1ouv_A Conserved hypothetical 99.5 2.1E-11 7.1E-16 110.7 25.9 228 217-478 5-253 (273)
47 2h6f_A Protein farnesyltransfe 99.5 3.5E-12 1.2E-16 120.7 21.3 247 187-458 97-364 (382)
48 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-11 4.5E-16 110.5 23.8 204 218-447 37-244 (252)
49 2ho1_A Type 4 fimbrial biogene 99.5 7.1E-12 2.4E-16 112.3 22.0 197 253-477 37-239 (252)
50 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.7E-17 116.2 16.5 205 217-450 22-231 (243)
51 2vq2_A PILW, putative fimbrial 99.5 2.2E-11 7.6E-16 106.8 23.5 201 217-447 7-217 (225)
52 4e6h_A MRNA 3'-END-processing 99.5 3.5E-10 1.2E-14 114.3 34.7 424 36-476 51-570 (679)
53 4a1s_A PINS, partner of inscut 99.5 1.4E-12 4.7E-17 126.3 16.7 271 192-475 53-371 (411)
54 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4E-16 108.6 21.2 197 252-476 7-211 (225)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.3E-13 2.2E-17 120.9 13.2 241 95-342 17-265 (275)
56 3sf4_A G-protein-signaling mod 99.4 9.4E-12 3.2E-16 120.1 21.4 277 186-475 8-335 (406)
57 2q7f_A YRRB protein; TPR, prot 99.4 2.6E-12 8.8E-17 114.4 16.0 197 251-476 21-222 (243)
58 3ro2_A PINS homolog, G-protein 99.4 7.3E-12 2.5E-16 117.3 19.8 272 192-476 10-332 (338)
59 2h6f_A Protein farnesyltransfe 99.4 6.5E-12 2.2E-16 118.8 18.3 125 54-183 99-227 (382)
60 4a1s_A PINS, partner of inscut 99.4 2.1E-11 7.2E-16 117.9 21.9 280 86-443 51-374 (411)
61 1ouv_A Conserved hypothetical 99.4 5.1E-11 1.7E-15 108.2 22.5 218 53-282 7-251 (273)
62 3ulq_A Response regulator aspa 99.4 3.3E-11 1.1E-15 115.3 20.4 238 224-475 109-367 (383)
63 3ro2_A PINS homolog, G-protein 99.4 8E-11 2.7E-15 110.1 22.7 204 86-318 8-249 (338)
64 4e6h_A MRNA 3'-END-processing 99.4 3.6E-09 1.2E-13 107.0 34.9 420 15-457 64-584 (679)
65 4abn_A Tetratricopeptide repea 99.4 1.1E-11 3.8E-16 121.8 16.3 218 233-472 83-317 (474)
66 3vtx_A MAMA; tetratricopeptide 99.3 6.6E-11 2.3E-15 100.3 17.8 159 292-475 5-169 (184)
67 3ulq_A Response regulator aspa 99.3 1.7E-10 5.8E-15 110.4 22.4 57 382-438 306-366 (383)
68 3nf1_A KLC 1, kinesin light ch 99.3 1E-11 3.5E-16 115.0 13.5 245 218-475 27-306 (311)
69 3e4b_A ALGK; tetratricopeptide 99.3 4E-11 1.4E-15 117.1 17.7 336 123-478 8-389 (452)
70 3vtx_A MAMA; tetratricopeptide 99.3 1.7E-10 5.9E-15 97.7 17.9 166 253-447 5-176 (184)
71 2ond_A Cleavage stimulation fa 99.3 5.8E-10 2E-14 103.1 22.5 218 204-447 33-276 (308)
72 4abn_A Tetratricopeptide repea 99.3 6.7E-11 2.3E-15 116.2 16.9 210 99-318 84-318 (474)
73 4gyw_A UDP-N-acetylglucosamine 99.3 6.2E-11 2.1E-15 121.2 16.9 165 286-475 3-173 (723)
74 2ond_A Cleavage stimulation fa 99.3 7.1E-10 2.4E-14 102.5 22.2 208 69-282 33-270 (308)
75 3q15_A PSP28, response regulat 99.3 5.5E-10 1.9E-14 106.6 21.8 239 223-475 106-364 (378)
76 3as5_A MAMA; tetratricopeptide 99.2 7.1E-10 2.4E-14 93.7 18.6 163 290-476 6-173 (186)
77 3nf1_A KLC 1, kinesin light ch 99.2 1.8E-11 6.3E-16 113.3 8.9 172 9-183 19-222 (311)
78 1hz4_A MALT regulatory protein 99.2 2.1E-08 7.3E-13 95.3 29.2 99 220-318 95-200 (373)
79 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.6E-14 99.7 19.5 201 262-474 46-267 (292)
80 4i17_A Hypothetical protein; T 99.2 2.7E-09 9.2E-14 93.7 20.5 211 216-456 5-223 (228)
81 1hz4_A MALT regulatory protein 99.2 4.9E-08 1.7E-12 92.8 30.9 275 89-405 20-319 (373)
82 3q15_A PSP28, response regulat 99.2 8.2E-10 2.8E-14 105.4 17.6 213 128-343 111-356 (378)
83 4i17_A Hypothetical protein; T 99.1 4.2E-09 1.4E-13 92.5 16.0 190 251-476 5-209 (228)
84 3as5_A MAMA; tetratricopeptide 99.1 1.3E-08 4.3E-13 85.8 18.4 157 154-319 9-171 (186)
85 3edt_B KLC 2, kinesin light ch 99.1 5.8E-09 2E-13 94.7 16.8 232 231-475 14-280 (283)
86 1qqe_A Vesicular transport pro 99.0 2E-08 6.9E-13 91.8 20.4 222 203-447 33-275 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.0 1E-08 3.4E-13 105.0 18.5 158 218-405 9-171 (723)
88 3edt_B KLC 2, kinesin light ch 99.0 7E-09 2.4E-13 94.2 14.0 101 219-319 86-196 (283)
89 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.5E-13 80.0 14.1 127 346-476 4-132 (136)
90 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.8E-12 85.3 20.0 184 237-447 85-288 (310)
91 3qky_A Outer membrane assembly 98.9 5E-08 1.7E-12 87.6 17.2 84 415-523 152-248 (261)
92 2ifu_A Gamma-SNAP; membrane fu 98.9 1.7E-07 5.7E-12 86.4 20.9 232 200-468 4-253 (307)
93 3qky_A Outer membrane assembly 98.9 3.7E-08 1.3E-12 88.4 15.4 189 216-447 13-230 (261)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5.1E-12 82.3 18.3 108 351-478 104-215 (225)
95 3mv2_B Coatomer subunit epsilo 98.8 1.5E-07 5.2E-12 84.4 16.8 90 189-280 138-238 (310)
96 2pzi_A Probable serine/threoni 98.8 1.9E-08 6.6E-13 103.4 12.6 188 229-447 402-608 (681)
97 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4.1E-13 82.8 8.8 140 298-462 3-149 (150)
98 3gyz_A Chaperone protein IPGC; 98.8 7.8E-08 2.7E-12 77.6 12.6 101 374-476 30-133 (151)
99 2ifu_A Gamma-SNAP; membrane fu 98.8 9.5E-08 3.3E-12 88.0 14.7 200 231-474 4-222 (307)
100 2fo7_A Synthetic consensus TPR 98.8 1.9E-07 6.4E-12 73.7 14.5 125 189-319 3-130 (136)
101 3urz_A Uncharacterized protein 98.8 2E-07 6.8E-12 80.3 15.1 126 297-447 59-192 (208)
102 2r5s_A Uncharacterized protein 98.8 1.8E-07 6.3E-12 78.1 14.4 154 296-474 10-171 (176)
103 3urz_A Uncharacterized protein 98.7 2.3E-07 7.9E-12 79.9 14.9 165 225-417 11-196 (208)
104 3qou_A Protein YBBN; thioredox 98.7 2.4E-07 8.3E-12 84.2 15.8 84 389-474 195-282 (287)
105 2r5s_A Uncharacterized protein 98.7 5.3E-07 1.8E-11 75.3 16.2 155 190-351 9-172 (176)
106 4ga2_A E3 SUMO-protein ligase 98.7 3E-08 1E-12 80.4 8.0 121 350-475 4-128 (150)
107 2pzi_A Probable serine/threoni 98.7 4.6E-07 1.6E-11 93.1 18.2 180 28-214 402-603 (681)
108 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.2E-06 4.1E-11 76.5 18.3 186 220-447 6-219 (225)
109 2uy1_A Cleavage stimulation fa 98.7 1.2E-06 4.1E-11 85.9 20.1 205 204-438 196-411 (493)
110 2uy1_A Cleavage stimulation fa 98.7 3.6E-06 1.2E-10 82.5 22.7 360 68-475 11-412 (493)
111 2vgx_A Chaperone SYCD; alterna 98.7 9.5E-08 3.2E-12 77.2 9.5 108 364-476 8-118 (148)
112 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.6E-12 72.6 10.8 99 375-475 8-109 (126)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.8E-07 2E-11 77.6 14.4 123 348-477 11-151 (213)
114 2vsy_A XCC0866; transferase, g 98.6 3.7E-07 1.3E-11 92.1 14.9 159 266-454 2-169 (568)
115 3qou_A Protein YBBN; thioredox 98.6 1E-06 3.5E-11 80.1 16.0 154 52-211 117-279 (287)
116 3dra_A Protein farnesyltransfe 98.6 1E-05 3.4E-10 73.4 22.2 215 232-475 47-286 (306)
117 2vsy_A XCC0866; transferase, g 98.6 5E-07 1.7E-11 91.1 14.7 146 231-406 2-155 (568)
118 4gco_A Protein STI-1; structur 98.6 5.8E-07 2E-11 70.2 11.6 107 345-456 15-124 (126)
119 2c2l_A CHIP, carboxy terminus 98.6 4E-07 1.4E-11 82.5 11.6 184 254-475 5-198 (281)
120 1a17_A Serine/threonine protei 98.6 1E-06 3.4E-11 72.5 13.2 126 344-474 14-144 (166)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.8E-06 9.5E-11 73.3 16.5 130 190-320 9-149 (213)
122 3rjv_A Putative SEL1 repeat pr 98.6 2.4E-06 8.3E-11 73.6 15.9 174 101-282 4-197 (212)
123 2xcb_A PCRH, regulatory protei 98.6 8.8E-07 3E-11 70.9 12.1 101 374-476 12-115 (142)
124 3rjv_A Putative SEL1 repeat pr 98.5 4.5E-06 1.5E-10 72.0 17.2 163 292-478 18-199 (212)
125 3gw4_A Uncharacterized protein 98.5 1.7E-06 5.9E-11 73.9 14.1 172 198-369 3-193 (203)
126 3u3w_A Transcriptional activat 98.5 1.7E-05 5.7E-10 72.3 21.1 165 297-474 80-264 (293)
127 1na0_A Designed protein CTPR3; 98.5 1.8E-06 6E-11 66.9 12.5 112 345-460 11-124 (125)
128 4f3v_A ESX-1 secretion system 98.5 6.5E-07 2.2E-11 79.2 10.5 198 265-476 18-237 (282)
129 1p5q_A FKBP52, FK506-binding p 98.5 8.3E-07 2.8E-11 82.7 11.8 124 346-474 150-292 (336)
130 3u3w_A Transcriptional activat 98.5 7.7E-06 2.6E-10 74.6 17.9 161 193-353 81-267 (293)
131 2qfc_A PLCR protein; TPR, HTH, 98.5 5.5E-06 1.9E-10 75.5 16.9 170 85-282 77-266 (293)
132 2e2e_A Formate-dependent nitri 98.5 6.5E-07 2.2E-11 74.8 9.7 120 354-477 21-145 (177)
133 3dra_A Protein farnesyltransfe 98.5 1.9E-05 6.6E-10 71.5 19.6 231 32-297 48-298 (306)
134 2vyi_A SGTA protein; chaperone 98.4 2.7E-06 9.1E-11 66.5 12.3 115 345-463 14-130 (131)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 5.9E-06 2E-10 75.3 15.9 170 190-359 78-273 (293)
136 3upv_A Heat shock protein STI1 98.4 1.9E-06 6.5E-11 67.2 10.7 95 379-475 4-100 (126)
137 2lni_A Stress-induced-phosphop 98.4 2.9E-06 1E-10 66.6 11.7 110 347-461 20-132 (133)
138 3gyz_A Chaperone protein IPGC; 98.4 8.2E-06 2.8E-10 65.6 13.6 83 254-341 37-122 (151)
139 2kck_A TPR repeat; tetratricop 98.4 2E-06 6.8E-11 65.1 9.6 99 378-478 5-108 (112)
140 2c2l_A CHIP, carboxy terminus 98.4 1.4E-06 4.9E-11 78.8 9.9 96 51-147 3-101 (281)
141 4f3v_A ESX-1 secretion system 98.4 3E-05 1E-09 68.6 17.8 123 157-282 106-237 (282)
142 1na0_A Designed protein CTPR3; 98.3 5.5E-06 1.9E-10 64.0 11.5 111 52-164 9-122 (125)
143 3q49_B STIP1 homology and U bo 98.3 5E-06 1.7E-10 65.8 11.3 98 377-476 7-106 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.3 3.5E-06 1.2E-10 69.2 10.6 95 379-475 11-107 (164)
145 1hxi_A PEX5, peroxisome target 98.3 2.3E-06 7.8E-11 66.2 8.6 94 381-476 19-114 (121)
146 2fbn_A 70 kDa peptidylprolyl i 98.3 2.3E-06 7.7E-11 73.0 9.2 128 348-477 43-187 (198)
147 3gw4_A Uncharacterized protein 98.3 4E-06 1.4E-10 71.6 10.7 163 129-319 3-174 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.3 7.1E-06 2.4E-10 62.6 11.0 95 379-475 4-100 (118)
149 2lni_A Stress-induced-phosphop 98.3 7.6E-06 2.6E-10 64.1 11.3 115 51-167 15-132 (133)
150 3q7a_A Farnesyltransferase alp 98.3 0.0002 6.9E-09 65.6 21.5 232 221-475 57-330 (349)
151 2vyi_A SGTA protein; chaperone 98.3 2.3E-05 7.8E-10 61.0 13.5 114 219-338 13-129 (131)
152 1elw_A TPR1-domain of HOP; HOP 98.2 2.2E-05 7.4E-10 59.9 12.6 107 345-456 6-115 (118)
153 4gcn_A Protein STI-1; structur 98.2 5E-06 1.7E-10 64.9 9.0 95 379-475 8-111 (127)
154 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.5E-10 64.5 10.5 97 348-448 23-122 (142)
155 2dba_A Smooth muscle cell asso 98.2 1.5E-05 5.2E-10 63.8 11.7 97 378-476 27-128 (148)
156 2vgx_A Chaperone SYCD; alterna 98.2 2E-05 7E-10 63.3 12.0 98 346-447 24-124 (148)
157 1a17_A Serine/threonine protei 98.2 3.2E-05 1.1E-09 63.3 13.5 92 220-317 15-106 (166)
158 3upv_A Heat shock protein STI1 98.2 1.9E-05 6.5E-10 61.4 11.4 107 345-456 6-121 (126)
159 4gcn_A Protein STI-1; structur 98.2 2.9E-05 9.7E-10 60.5 12.1 109 255-384 10-121 (127)
160 2dba_A Smooth muscle cell asso 98.2 2.8E-05 9.6E-10 62.2 12.4 108 345-457 30-143 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 2.8E-05 9.6E-10 63.7 12.5 103 344-450 12-117 (164)
162 4b4t_Q 26S proteasome regulato 98.1 0.0001 3.6E-09 71.2 18.0 168 295-474 58-243 (434)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.5E-05 5E-10 77.7 11.4 127 347-475 272-414 (457)
164 1wao_1 Serine/threonine protei 98.1 8.7E-06 3E-10 79.6 9.7 116 352-472 15-135 (477)
165 2if4_A ATFKBP42; FKBP-like, al 98.1 1.4E-05 4.8E-10 74.3 10.6 127 345-476 181-328 (338)
166 3ro3_A PINS homolog, G-protein 98.1 2.5E-05 8.6E-10 63.5 10.9 130 344-475 10-157 (164)
167 1p5q_A FKBP52, FK506-binding p 98.1 4.6E-05 1.6E-09 70.8 13.7 120 218-342 147-283 (336)
168 2e2e_A Formate-dependent nitri 98.1 1.8E-05 6.1E-10 65.8 9.9 116 199-320 22-143 (177)
169 1elr_A TPR2A-domain of HOP; HO 98.1 1.7E-05 5.9E-10 61.8 8.9 96 379-476 4-108 (131)
170 2xev_A YBGF; tetratricopeptide 98.0 1.6E-05 5.4E-10 62.0 8.5 89 385-475 8-104 (129)
171 2hr2_A Hypothetical protein; a 98.0 2E-05 6.8E-10 62.9 8.7 92 382-475 14-130 (159)
172 3q7a_A Farnesyltransferase alp 98.0 0.00024 8.1E-09 65.1 16.9 80 31-111 68-153 (349)
173 3rkv_A Putative peptidylprolyl 98.0 4.9E-05 1.7E-09 62.1 11.3 93 381-475 13-125 (162)
174 1hxi_A PEX5, peroxisome target 98.0 3.3E-05 1.1E-09 59.5 9.3 93 350-446 24-119 (121)
175 4b4t_Q 26S proteasome regulato 98.0 0.00039 1.3E-08 67.1 19.0 172 256-438 58-243 (434)
176 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.3E-10 68.2 7.2 119 188-312 39-176 (198)
177 2xev_A YBGF; tetratricopeptide 98.0 7E-05 2.4E-09 58.2 10.8 98 349-450 8-114 (129)
178 3q49_B STIP1 homology and U bo 98.0 0.0002 6.8E-09 56.3 13.5 99 216-320 7-105 (137)
179 1elr_A TPR2A-domain of HOP; HO 97.9 7.9E-05 2.7E-09 57.9 10.7 96 219-320 5-107 (131)
180 2kck_A TPR repeat; tetratricop 97.9 4.9E-05 1.7E-09 57.2 9.1 93 54-147 8-106 (112)
181 3k9i_A BH0479 protein; putativ 97.9 7.8E-06 2.7E-10 62.7 4.6 90 356-447 3-96 (117)
182 3ro3_A PINS homolog, G-protein 97.9 0.00017 5.8E-09 58.4 13.0 99 220-318 11-115 (164)
183 1ihg_A Cyclophilin 40; ppiase 97.9 5.2E-05 1.8E-09 71.3 11.0 90 378-469 272-363 (370)
184 3dss_A Geranylgeranyl transfer 97.9 0.0025 8.6E-08 58.1 21.2 179 269-475 90-303 (331)
185 3n71_A Histone lysine methyltr 97.9 0.00011 3.7E-09 71.4 12.2 124 353-476 319-464 (490)
186 3k9i_A BH0479 protein; putativ 97.9 1.7E-05 6E-10 60.7 5.3 84 391-476 2-90 (117)
187 2l6j_A TPR repeat-containing p 97.8 7.7E-06 2.6E-10 61.8 2.9 94 377-472 2-103 (111)
188 3rkv_A Putative peptidylprolyl 97.8 7E-05 2.4E-09 61.1 8.9 69 378-447 62-132 (162)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00023 8E-09 69.1 13.0 121 218-343 268-405 (457)
190 3dss_A Geranylgeranyl transfer 97.7 0.0036 1.2E-07 57.0 19.5 203 234-454 90-316 (331)
191 2hr2_A Hypothetical protein; a 97.7 0.00011 3.6E-09 58.6 8.0 100 347-450 15-140 (159)
192 3ma5_A Tetratricopeptide repea 97.7 0.00017 6E-09 53.1 8.2 64 410-475 6-69 (100)
193 1dce_A Protein (RAB geranylger 97.7 0.0019 6.6E-08 64.3 17.7 169 269-465 45-244 (567)
194 1na3_A Designed protein CTPR2; 97.6 0.00028 9.6E-09 50.6 8.4 82 378-461 8-91 (91)
195 3lvg_A Clathrin heavy chain 1; 97.6 4.4E-06 1.5E-10 77.7 -2.1 360 51-436 53-479 (624)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00036 1.2E-08 64.8 10.5 94 220-320 181-292 (338)
197 1klx_A Cysteine rich protein B 97.6 0.0012 4E-08 52.0 11.9 112 357-478 9-128 (138)
198 2kat_A Uncharacterized protein 97.5 0.00019 6.4E-09 54.5 6.7 64 410-475 18-81 (115)
199 1ihg_A Cyclophilin 40; ppiase 97.5 0.00067 2.3E-08 63.7 11.7 119 189-313 225-362 (370)
200 2l6j_A TPR repeat-containing p 97.5 0.00014 4.7E-09 54.7 5.6 96 83-183 4-105 (111)
201 1wao_1 Serine/threonine protei 97.5 0.00017 5.8E-09 70.5 7.3 115 61-180 15-134 (477)
202 3bee_A Putative YFRE protein; 97.4 0.001 3.4E-08 48.0 8.4 69 408-478 3-74 (93)
203 3n71_A Histone lysine methyltr 97.4 0.00056 1.9E-08 66.5 9.2 128 263-406 319-462 (490)
204 3qwp_A SET and MYND domain-con 97.4 0.00062 2.1E-08 65.1 9.4 118 386-522 294-428 (429)
205 1na3_A Designed protein CTPR2; 97.2 0.0057 2E-07 43.5 10.8 80 219-304 10-89 (91)
206 1zu2_A Mitochondrial import re 97.1 0.00027 9.2E-09 56.2 3.3 48 427-476 62-120 (158)
207 1zu2_A Mitochondrial import re 97.0 0.00088 3E-08 53.2 5.4 110 356-477 15-148 (158)
208 3ma5_A Tetratricopeptide repea 96.9 0.005 1.7E-07 45.1 8.7 59 254-317 8-66 (100)
209 2kat_A Uncharacterized protein 96.9 0.0075 2.6E-07 45.4 9.7 77 236-318 3-79 (115)
210 1qsa_A Protein (soluble lytic 96.9 0.44 1.5E-05 47.5 28.1 257 192-475 77-347 (618)
211 3qww_A SET and MYND domain-con 96.8 0.0021 7.3E-08 61.3 7.5 83 392-475 311-410 (433)
212 3ly7_A Transcriptional activat 96.7 0.057 2E-06 49.5 15.6 113 358-476 214-339 (372)
213 3qww_A SET and MYND domain-con 96.7 0.0067 2.3E-07 57.8 9.9 93 355-447 310-422 (433)
214 1wy6_A Hypothetical protein ST 96.7 0.067 2.3E-06 40.4 12.7 116 356-479 20-157 (172)
215 1klx_A Cysteine rich protein B 96.6 0.017 5.8E-07 45.2 10.3 110 31-148 9-127 (138)
216 1dce_A Protein (RAB geranylger 96.6 0.13 4.4E-06 51.1 18.9 181 202-397 44-244 (567)
217 1pc2_A Mitochondria fission pr 96.6 0.0094 3.2E-07 46.8 8.2 87 358-447 13-106 (152)
218 3lvg_A Clathrin heavy chain 1; 96.6 0.002 7E-08 60.3 5.1 360 16-403 82-536 (624)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0051 1.8E-07 44.7 6.5 53 421-475 10-63 (99)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.27 9.2E-06 51.5 22.1 153 128-318 609-762 (814)
221 3qwp_A SET and MYND domain-con 96.5 0.015 5.1E-07 55.5 10.9 97 351-447 295-411 (429)
222 2kc7_A BFR218_protein; tetratr 96.3 0.016 5.6E-07 41.9 7.8 64 385-449 6-72 (99)
223 3ly7_A Transcriptional activat 96.1 0.066 2.3E-06 49.1 12.3 73 376-450 274-347 (372)
224 3mkq_A Coatomer beta'-subunit; 95.9 0.21 7.2E-06 52.3 17.0 155 25-213 607-762 (814)
225 3bee_A Putative YFRE protein; 95.6 0.11 3.8E-06 37.1 9.5 71 376-447 3-78 (93)
226 3mkq_B Coatomer subunit alpha; 95.4 0.68 2.3E-05 37.3 14.0 46 63-110 16-61 (177)
227 1pc2_A Mitochondria fission pr 95.4 0.047 1.6E-06 42.8 7.1 80 395-476 14-100 (152)
228 2wpv_A GET4, UPF0363 protein Y 95.2 1.6 5.5E-05 39.0 20.5 171 190-371 36-216 (312)
229 3u64_A Protein TP_0956; tetrat 95.1 0.18 6E-06 44.4 10.5 106 358-474 178-296 (301)
230 1nzn_A CGI-135 protein, fissio 95.1 0.11 3.8E-06 39.1 8.1 88 357-447 15-109 (126)
231 2v5f_A Prolyl 4-hydroxylase su 95.0 0.088 3E-06 38.6 7.5 72 378-450 4-84 (104)
232 3mkq_B Coatomer subunit alpha; 95.0 1.1 3.9E-05 36.0 14.9 100 163-278 15-114 (177)
233 2v5f_A Prolyl 4-hydroxylase su 95.0 0.27 9.3E-06 35.9 10.0 65 218-282 5-75 (104)
234 3u64_A Protein TP_0956; tetrat 94.9 0.08 2.8E-06 46.5 7.6 83 395-479 179-272 (301)
235 4gns_B Protein CSD3, chitin bi 94.5 0.17 5.9E-06 51.4 10.1 119 351-474 256-398 (754)
236 3lpz_A GET4 (YOR164C homolog); 94.4 2.8 9.5E-05 37.8 21.8 171 190-371 38-215 (336)
237 1y8m_A FIS1; mitochondria, unk 94.4 1.3 4.5E-05 34.0 12.9 66 409-475 37-105 (144)
238 1wy6_A Hypothetical protein ST 94.1 1.4 4.9E-05 33.4 13.2 60 222-282 95-154 (172)
239 4b4t_P 26S proteasome regulato 94.1 4.3 0.00015 38.7 18.9 232 221-478 140-388 (445)
240 1nzn_A CGI-135 protein, fissio 93.3 0.91 3.1E-05 34.2 9.7 66 408-475 32-102 (126)
241 3o48_A Mitochondria fission 1 92.4 1 3.6E-05 34.0 8.9 30 417-447 84-113 (134)
242 1qsa_A Protein (soluble lytic 92.4 9.7 0.00033 37.9 28.2 79 54-134 74-152 (618)
243 3txn_A 26S proteasome regulato 91.6 3.8 0.00013 38.1 13.7 163 296-473 23-207 (394)
244 4h7y_A Dual specificity protei 90.8 1 3.4E-05 35.0 7.4 52 424-477 73-124 (161)
245 2wpv_A GET4, UPF0363 protein Y 90.4 9.3 0.00032 34.1 14.5 153 300-468 21-189 (312)
246 4h7y_A Dual specificity protei 90.4 1.8 6.2E-05 33.6 8.4 59 96-155 73-131 (161)
247 2ff4_A Probable regulatory pro 90.2 0.68 2.3E-05 43.4 7.5 69 414-484 174-247 (388)
248 3ffl_A Anaphase-promoting comp 89.8 0.93 3.2E-05 35.9 6.7 101 374-475 13-150 (167)
249 4fhn_B Nucleoporin NUP120; pro 88.6 4.3 0.00015 44.2 13.2 53 191-244 816-868 (1139)
250 1v54_E Cytochrome C oxidase po 88.5 4 0.00014 29.0 8.3 63 233-300 25-87 (109)
251 4b4t_P 26S proteasome regulato 88.3 18 0.00061 34.4 16.1 51 232-282 30-85 (445)
252 4fhn_B Nucleoporin NUP120; pro 88.0 15 0.00052 40.0 17.0 207 258-474 817-1048(1139)
253 3ltm_A Alpha-REP4; protein eng 87.5 11 0.00038 31.2 19.3 91 151-245 93-183 (211)
254 1v54_E Cytochrome C oxidase po 86.9 3.1 0.00011 29.6 7.0 62 98-160 25-86 (109)
255 4ady_A RPN2, 26S proteasome re 85.3 28 0.00096 36.4 16.1 26 19-44 232-257 (963)
256 3ltj_A Alpharep-4; protein eng 85.2 14 0.00049 30.2 18.3 90 152-245 89-178 (201)
257 3ltm_A Alpha-REP4; protein eng 85.1 15 0.00051 30.4 16.1 143 49-202 30-172 (211)
258 3ltj_A Alpharep-4; protein eng 85.0 15 0.0005 30.1 17.9 144 50-204 26-169 (201)
259 3ffl_A Anaphase-promoting comp 84.5 8.9 0.0003 30.3 9.4 115 189-320 22-150 (167)
260 2ff4_A Probable regulatory pro 84.1 3 0.0001 38.9 8.1 68 88-156 176-248 (388)
261 4gns_B Protein CSD3, chitin bi 83.4 4.7 0.00016 41.1 9.5 122 193-319 254-398 (754)
262 2y69_E Cytochrome C oxidase su 82.7 11 0.00039 28.4 8.7 62 233-299 68-129 (152)
263 2y69_E Cytochrome C oxidase su 78.5 9 0.00031 28.9 7.0 59 101-160 71-129 (152)
264 3esl_A Checkpoint serine/threo 77.8 26 0.00088 28.8 10.3 73 407-480 73-148 (202)
265 4ady_A RPN2, 26S proteasome re 77.4 75 0.0026 33.3 26.5 235 195-437 382-655 (963)
266 1y8m_A FIS1; mitochondria, unk 77.3 15 0.00052 28.1 8.2 71 376-447 36-112 (144)
267 2uwj_G Type III export protein 76.9 17 0.00059 25.7 9.1 87 31-122 20-106 (115)
268 4b4t_R RPN7, 26S proteasome re 76.6 10 0.00036 35.8 9.1 99 220-318 133-234 (429)
269 2p58_C Putative type III secre 76.0 18 0.00063 25.6 9.1 86 31-121 21-106 (116)
270 1wdy_A 2-5A-dependent ribonucl 75.9 20 0.00069 31.0 10.5 56 195-251 153-212 (285)
271 3lpz_A GET4 (YOR164C homolog); 75.7 45 0.0016 30.0 23.5 68 54-132 37-108 (336)
272 1zbp_A Hypothetical protein VP 75.5 28 0.00097 30.1 10.4 116 352-476 6-129 (273)
273 1zbp_A Hypothetical protein VP 72.0 23 0.00079 30.6 9.0 54 262-320 6-59 (273)
274 4b4t_R RPN7, 26S proteasome re 71.0 5.8 0.0002 37.6 5.8 58 347-405 135-194 (429)
275 2pk8_A Uncharacterized protein 68.5 3.8 0.00013 28.1 2.7 30 503-532 12-41 (103)
276 3kea_A K1L; tropism, ANK repea 68.4 36 0.0012 29.7 10.3 142 59-211 35-182 (285)
277 3esl_A Checkpoint serine/threo 67.6 38 0.0013 27.8 9.0 84 70-154 62-151 (202)
278 4a1g_A Mitotic checkpoint seri 64.0 49 0.0017 25.7 9.0 79 398-480 54-134 (152)
279 1k1a_A B-cell lymphoma 3-encod 62.1 68 0.0023 26.7 11.6 57 23-79 12-70 (241)
280 3eu9_A Huntingtin-interacting 60.6 46 0.0016 27.7 9.2 51 26-80 15-67 (240)
281 2wvi_A Mitotic checkpoint seri 57.1 70 0.0024 25.2 9.1 70 407-480 59-129 (164)
282 3jxi_A Vanilloid receptor-rela 56.7 27 0.00093 29.9 7.1 115 93-211 12-161 (260)
283 3eiq_C Programmed cell death p 56.4 1.2E+02 0.004 27.6 13.6 57 54-110 56-116 (358)
284 4a1g_A Mitotic checkpoint seri 56.3 69 0.0023 24.9 9.2 55 100-154 82-137 (152)
285 3b7b_A Euchromatic histone-lys 55.8 71 0.0024 26.5 9.6 53 23-79 14-68 (237)
286 2uwj_G Type III export protein 53.3 58 0.002 23.1 8.9 57 197-256 49-105 (115)
287 1wdy_A 2-5A-dependent ribonucl 52.8 1.1E+02 0.0037 26.1 13.0 85 225-317 152-241 (285)
288 2p58_C Putative type III secre 52.0 61 0.0021 23.0 9.8 50 197-248 50-99 (116)
289 3o48_A Mitochondria fission 1 50.9 78 0.0027 23.9 9.2 69 248-320 35-106 (134)
290 2qx5_A Nucleoporin NIC96; mRNA 49.7 2.1E+02 0.0073 28.6 21.3 38 57-94 157-197 (661)
291 2wvi_A Mitotic checkpoint seri 49.4 95 0.0032 24.5 9.3 55 100-154 77-132 (164)
292 4gq2_M Nucleoporin NUP120; bet 46.9 1.2E+02 0.0041 32.1 11.1 52 193-245 816-867 (950)
293 2ion_A PDCD4, programmed cell 46.6 99 0.0034 24.0 7.9 65 190-254 12-81 (152)
294 3eiq_C Programmed cell death p 46.2 1.7E+02 0.0059 26.6 10.9 28 343-370 217-244 (358)
295 1k1a_A B-cell lymphoma 3-encod 44.1 1.1E+02 0.0036 25.4 8.8 24 94-117 17-40 (241)
296 3hra_A Ankyrin repeat family p 44.1 94 0.0032 24.9 8.2 55 197-252 113-172 (201)
297 2nsz_A Programmed cell death p 43.4 74 0.0025 23.9 6.6 63 54-116 9-76 (129)
298 2pnn_A Transient receptor pote 43.2 92 0.0032 26.7 8.4 59 85-144 13-80 (273)
299 4aez_C MAD3, mitotic spindle c 43.1 1.5E+02 0.005 24.8 8.7 137 15-154 27-186 (223)
300 3kea_A K1L; tropism, ANK repea 41.6 72 0.0024 27.8 7.4 139 93-242 38-182 (285)
301 2nsz_A Programmed cell death p 41.4 1.1E+02 0.0037 22.9 9.3 65 190-254 10-79 (129)
302 3txn_A 26S proteasome regulato 41.3 2.2E+02 0.0075 26.3 25.9 230 223-478 104-345 (394)
303 3ljn_A Hypothetical protein; a 40.7 1.1E+02 0.0036 27.7 8.8 25 125-149 88-112 (364)
304 2r9g_A AAA ATPase, central reg 40.7 1.5E+02 0.0051 24.2 8.9 64 223-291 16-87 (204)
305 2d2s_A Exocyst complex compone 40.1 93 0.0032 26.3 7.4 85 89-179 24-114 (235)
306 2y8t_B RON2, rhoptry NECK prot 40.1 20 0.00069 18.6 1.9 21 516-536 2-22 (37)
307 1n11_A Ankyrin; clathrin, BAND 37.0 1.9E+02 0.0066 26.8 10.2 174 23-213 17-202 (437)
308 3ljn_A Hypothetical protein; a 37.0 1.1E+02 0.0039 27.5 8.3 90 22-116 22-114 (364)
309 2zu6_B Programmed cell death p 36.3 2.3E+02 0.0078 25.1 11.9 217 222-460 7-271 (307)
310 3eu9_A Huntingtin-interacting 35.6 1.8E+02 0.0062 23.8 11.0 18 62-79 16-33 (240)
311 2ion_A PDCD4, programmed cell 35.5 62 0.0021 25.2 5.2 63 54-116 11-78 (152)
312 1bd8_A P19INK4D CDK4/6 inhibit 35.1 1.3E+02 0.0046 22.6 7.4 47 161-212 106-155 (156)
313 4aez_C MAD3, mitotic spindle c 35.1 2E+02 0.0067 24.0 8.3 51 429-480 132-183 (223)
314 2b7e_A PRE-mRNA processing pro 34.1 40 0.0014 21.2 3.0 34 99-132 2-36 (59)
315 3ctd_A Putative ATPase, AAA fa 33.4 2E+02 0.0069 23.7 8.3 63 220-282 34-104 (213)
316 1ug3_A EIF4GI, eukaryotic prot 33.2 2.7E+02 0.0092 25.0 10.2 125 191-315 15-147 (339)
317 4b4t_S RPN3, 26S proteasome re 32.6 2.4E+02 0.0083 27.2 9.6 26 85-110 233-258 (523)
318 2rfa_A Transient receptor pote 32.3 1.6E+02 0.0053 24.2 7.9 54 195-249 126-182 (232)
319 2p1h_A APAF-1, apoptotic prote 30.0 1.2E+02 0.0042 20.9 5.6 60 36-99 24-83 (94)
320 2fe3_A Peroxide operon regulat 29.8 1.4E+02 0.0048 22.8 6.4 59 244-307 13-71 (145)
321 1bpo_A Protein (clathrin); cla 29.7 2.5E+02 0.0086 26.6 8.8 107 30-140 342-451 (494)
322 2fu4_A Ferric uptake regulatio 29.0 1.3E+02 0.0044 20.0 6.3 61 107-168 6-67 (83)
323 3ygs_P Procaspase 9; apoptosis 28.4 74 0.0025 22.4 4.2 31 203-233 53-83 (97)
324 3ygs_P Procaspase 9; apoptosis 28.3 61 0.0021 22.8 3.7 37 172-208 53-89 (97)
325 2ijq_A Hypothetical protein; s 28.1 2.1E+02 0.0071 22.4 7.0 56 228-283 42-105 (161)
326 1oyz_A Hypothetical protein YI 28.1 2.8E+02 0.0096 23.6 20.2 48 50-97 35-82 (280)
327 3bge_A Predicted ATPase; struc 27.9 2.5E+02 0.0084 22.9 8.6 45 223-267 9-56 (201)
328 3bqo_A Telomeric repeat-bindin 27.7 2.5E+02 0.0085 22.9 8.3 52 395-447 94-152 (211)
329 2r9g_A AAA ATPase, central reg 27.4 2.5E+02 0.0087 22.9 8.0 62 89-151 17-86 (204)
330 2etb_A Transient receptor pote 27.4 2.7E+02 0.0092 23.2 8.7 54 92-146 8-71 (256)
331 3d9h_A CDNA FLJ77766, highly s 26.9 2.4E+02 0.0082 24.2 8.4 213 51-277 11-243 (285)
332 4b4t_S RPN3, 26S proteasome re 26.6 2.4E+02 0.0083 27.1 8.4 62 344-405 232-296 (523)
333 3qye_A TBC1 domain family memb 26.3 3E+02 0.01 24.5 9.0 88 239-330 209-301 (331)
334 2xig_A Ferric uptake regulatio 25.7 2E+02 0.0068 22.1 6.6 59 244-307 18-76 (150)
335 1wgl_A TOLL-interacting protei 25.6 1.3E+02 0.0044 18.9 4.8 24 458-481 34-57 (59)
336 2ijq_A Hypothetical protein; s 25.5 1.8E+02 0.0063 22.7 6.2 53 94-146 43-103 (161)
337 2o03_A Probable zinc uptake re 25.4 95 0.0033 23.2 4.6 49 21-69 14-62 (131)
338 3aji_A 26S proteasome non-ATPa 25.1 2.5E+02 0.0085 22.9 7.9 19 59-77 10-28 (231)
339 1oyz_A Hypothetical protein YI 25.0 3.2E+02 0.011 23.2 23.2 82 185-269 140-222 (280)
340 3jxi_A Vanilloid receptor-rela 25.0 1.6E+02 0.0054 24.8 6.7 54 24-77 9-71 (260)
341 1n11_A Ankyrin; clathrin, BAND 24.4 4.2E+02 0.014 24.4 14.7 237 58-318 17-268 (437)
342 3mwm_A ZUR, putative metal upt 24.3 98 0.0034 23.5 4.5 49 21-69 17-65 (139)
343 4ets_A Ferric uptake regulatio 23.0 2E+02 0.0069 22.4 6.2 68 100-168 14-84 (162)
344 1mzb_A Ferric uptake regulatio 22.3 2.3E+02 0.0077 21.2 6.3 60 108-168 8-68 (136)
345 1bd8_A P19INK4D CDK4/6 inhibit 22.3 1.7E+02 0.0059 21.9 5.9 17 196-212 107-123 (156)
346 3aji_A 26S proteasome non-ATPa 22.2 3.2E+02 0.011 22.2 11.5 18 24-41 10-27 (231)
347 2p1h_A APAF-1, apoptotic prote 22.1 2E+02 0.0068 19.8 6.1 34 172-205 52-85 (94)
348 2qx5_A Nucleoporin NIC96; mRNA 21.9 6.1E+02 0.021 25.4 16.9 24 121-144 155-178 (661)
349 2d2s_A Exocyst complex compone 21.4 1.8E+02 0.0062 24.5 6.0 31 408-438 88-118 (235)
350 2xig_A Ferric uptake regulatio 21.3 1.3E+02 0.0043 23.2 4.7 58 41-99 16-77 (150)
351 4b4t_O 26S proteasome regulato 21.1 2.1E+02 0.0071 26.4 6.9 18 420-437 136-153 (393)
352 2o03_A Probable zinc uptake re 21.0 1.5E+02 0.0051 22.1 5.0 46 223-268 15-60 (131)
353 1mzb_A Ferric uptake regulatio 21.0 1.2E+02 0.004 22.9 4.4 46 22-67 22-68 (136)
354 2f8y_A Notch homolog 1, transl 20.4 3.4E+02 0.012 21.8 10.6 52 23-78 28-81 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-38 Score=322.83 Aligned_cols=446 Identities=12% Similarity=0.025 Sum_probs=303.3
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHH
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE--NPSTAIWNQMIRG 92 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~ 92 (538)
++...+..++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|+.+|+.+. +++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 45667888999999999999999999999865 4577888889999999999999999999884 6788899999999
Q ss_pred HhcCCCchHHHHHHHHhHh-C--------------CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHh
Q 044988 93 HARSETPEKSVYLYKQMID-K--------------ETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRT 157 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~-~--------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (538)
|.+.|++++|+++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 9999999999999985322 1 223357789999999999999999999999998875 33344444
Q ss_pred HHHHHHHhcCCCCChhHHH--HH-hhcCCCC----CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHHHHHHHH
Q 044988 158 NLMNLYLMSGGECGVGCAR--LL-FDDMPAR----SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGC 228 (538)
Q Consensus 158 ~l~~~~~~~g~~~~~~~a~--~~-~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~ 228 (538)
.+...+...+. .+.+. .+ +..+... ....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|
T Consensus 239 ~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 239 QLVSNHLLTAD---EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHTTCSCHH---HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHhhcccch---hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 44332221111 11000 00 1111110 112233334444445555555555555444 4444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCH
Q 044988 229 AQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEI 308 (538)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (538)
.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+. .|.+..+++.++..|.+.|++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSHHHHHHHHHHHHHTTCH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHhccH
Confidence 55555555555555554432 123344444555555555555555555554443 344444444455555555555
Q ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 309 EEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 309 ~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
++|.++|+++.+ .+..+|+.++.+|.+.|++++|+ .++..++.+|.+.|++++|.++|+++.+
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554432 23444555555555555555544 3444555666666788999999999987
Q ss_pred hcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccC
Q 044988 372 NWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-------MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEID 442 (538)
Q Consensus 372 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 442 (538)
.. +.+..+|+.++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|++++|.+.++++ .+..
T Consensus 470 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 546 (597)
T 2xpi_A 470 LF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG-LLLS 546 (597)
T ss_dssp HC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS
T ss_pred hC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhC
Confidence 62 3468899999999999999999999999883 3677 789999999999999999999999999 8888
Q ss_pred CCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 443 PEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 443 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
|++..+|. .++.+|.+.|++++|.+.++++.+.
T Consensus 547 p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHT-AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99998888 9999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-35 Score=298.86 Aligned_cols=428 Identities=9% Similarity=-0.011 Sum_probs=299.8
Q ss_pred ccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCC--------------
Q 044988 16 KALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENP-------------- 81 (538)
Q Consensus 16 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------- 81 (538)
+..++..++.+|...|+++.|..+++.+... ++++.+++.++.+|.+.|++++|+++|+++.+.
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 4467888999999999999999999987644 678899999999999999999999999965543
Q ss_pred -----CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHHccCCcHHH--HHH-HHHHHHhCCCCc
Q 044988 82 -----STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPD-EYTYSFLLSVCARCGLFREG--EQV-HGRVLASGYCSN 152 (538)
Q Consensus 82 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a--~~~-~~~~~~~~~~~~ 152 (538)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+..+.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 37789999999999999999999999998854 44 33444444333222211111 111 333333333333
Q ss_pred hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHH
Q 044988 153 VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISG 227 (538)
Q Consensus 153 ~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 227 (538)
..+|+.++..|.+.|+ +++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+
T Consensus 272 ~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDE---LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHHTTSCTTTTHHH---HHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcch---HHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 4445555556666666 6666666666655 4556666666666666666666666666542 244556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
|.+.|++++|..+++++.+. .+.+..++..++..|.+.|++++|..+|+.+.+. .|.+..+|+.++.+|.+.|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-----DPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666666543 2334555666666666666666666666666554 44455556666666666666
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH--------------HHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 308 IEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL--------------LTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 308 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
+++|.++|+++.+ ++..+|..++.+|.+.|++++|. .+|..++..|.+.|++++|.++|+++.
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666665542 34556666666666666666665 345556666667778888888888887
Q ss_pred hhc---CCCcc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCC
Q 044988 371 QNW---GIKPR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 371 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p 443 (538)
+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. . +.+..+|..+..+|.+.|++++|.+.++++ .++.|
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~p 581 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES-LAISP 581 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCT
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH-HhcCC
Confidence 642 45677 7899999999999999999999999874 3 347899999999999999999999999999 99999
Q ss_pred CCcccHHHHHHHHHH
Q 044988 444 EQAAGYLALVANVYA 458 (538)
Q Consensus 444 ~~~~~~~~~l~~~~~ 458 (538)
+++..+. .++.+|.
T Consensus 582 ~~~~~~~-~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASD-LLKRALE 595 (597)
T ss_dssp TCHHHHH-HHHHTTC
T ss_pred CChHHHH-HHHHHHh
Confidence 9998787 8877664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.7e-26 Score=222.81 Aligned_cols=369 Identities=12% Similarity=0.059 Sum_probs=245.7
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHH
Q 044988 26 LLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKS 102 (538)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 102 (538)
.+.+.|+++.|...+..+.+..+ .+...+..+...+...|++++|...++... +.+...|..+..++.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 34445555555555555544421 123344444444455555555555544332 22334455555555555555555
Q ss_pred HHHHHHhHhCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhc
Q 044988 103 VYLYKQMIDKETEPD-EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDD 181 (538)
Q Consensus 103 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~ 181 (538)
+..|+++.+. .|+ ..+|..+..++.+.|++++|...++++.+.. +.
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~------------------------------ 133 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PD------------------------------ 133 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TT------------------------------
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC------------------------------
Confidence 5555555442 232 2244445555555555555555555544432 12
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044988 182 MPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVA 258 (538)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 258 (538)
+...+..+...+...|++++|.+.|+++.+ | +..+|..+...+...|++++|...|+++.+.+ +.+...+..
T Consensus 134 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 134 ----LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp ----CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 223344455555555666666666665542 3 45678888888888899999999998888743 234667778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 044988 259 ALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAK 335 (538)
Q Consensus 259 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~ 335 (538)
+...+...|++++|...+....+. .|.+..++..+...|.+.|++++|.+.|+++.+ | +..+|..+...+.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 888888889999999988888886 677778888899999999999999999988764 2 34455555555555
Q ss_pred cCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHH
Q 044988 336 QGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAV 413 (538)
Q Consensus 336 ~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 413 (538)
.| ++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++. ..| +..+
T Consensus 284 ~g--------------------~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 284 KG--------------------SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HS--------------------CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred cC--------------------CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 44 777777888888765 24468889999999999999999999999874 334 4788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCC
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKR 462 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 462 (538)
+..+...+.+.|++++|...++++ .+..|+....+. .++.++.+.|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a-~~~~p~~~~a~~-~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEA-IRISPTFADAYS-NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHH-HTTCTTCHHHHH-HHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHH-hHHHHHHHccC
Confidence 899999999999999999999999 889999998888 88888777653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.6e-28 Score=237.66 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCCCChh-HHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHhcCCC---------chHH
Q 044988 37 FQIHSQIIINGFSQKNY-ILAKLLAFYVTSGYLINAHKVFEKTE----NPSTAIWNQMIRGHARSET---------PEKS 102 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~---------~~~a 102 (538)
..+...+.+.+..+++. +++.+|++|++.|++++|.++|++|. +||..+||+||.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 34445555555554443 46666777777777777777777665 4677777777777765544 5789
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcC
Q 044988 103 VYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDM 182 (538)
Q Consensus 103 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~ 182 (538)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ +++|.++|++|
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~---~~~A~~l~~~M 166 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD---ADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888888888888887 66666666554
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 183 PARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
.+. -..||..||++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..
T Consensus 167 ~~~---------------------------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 167 VES---------------------------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHT---------------------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred Hhc---------------------------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 321 13689999999999999999999999999999999999999999999998
Q ss_pred HHcc
Q 044988 263 CAEI 266 (538)
Q Consensus 263 ~~~~ 266 (538)
++..
T Consensus 220 F~s~ 223 (501)
T 4g26_A 220 FKSE 223 (501)
T ss_dssp HHSH
T ss_pred HhcC
Confidence 8764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-27 Score=234.77 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=167.7
Q ss_pred chHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC---------cHHHHHHHHHHHHhCCCCchh
Q 044988 84 AIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL---------FREGEQVHGRVLASGYCSNVF 154 (538)
Q Consensus 84 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 154 (538)
..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888899999999999999999999999999999999999999987664 578899999999999999988
Q ss_pred HHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCH
Q 044988 155 IRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKS 234 (538)
Q Consensus 155 ~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~ 234 (538)
+|+++|.+|++.|+ +++|.++|++|.+. -..||..+|+++|.+|++.|++
T Consensus 107 tyn~lI~~~~~~g~---~~~A~~l~~~M~~~---------------------------g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 107 TFTNGARLAVAKDD---PEMAFDMVKQMKAF---------------------------GIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHT---------------------------TCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHc---------------------------CCCCccceehHHHHHHHHCCCH
Confidence 88888888888888 77776666655321 1358999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhC
Q 044988 235 RQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASC 305 (538)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (538)
++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+. +..++..+|+.++..|+..
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~----g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL----VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh----CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 9999999999999988864
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.5e-25 Score=216.31 Aligned_cols=348 Identities=16% Similarity=0.124 Sum_probs=266.4
Q ss_pred HHHhcCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCC
Q 044988 91 RGHARSETPEKSVYLYKQMIDKETEPD-EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGE 169 (538)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 169 (538)
..+.+.|++++|.+.++.+.+. .|+ ...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~- 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ- 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC-
Confidence 3445556666666666665543 233 3344444455555666666666666655543 4455566666666666666
Q ss_pred CChhHHHHHhhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044988 170 CGVGCARLLFDDMPA--R-SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RN-VVSWTTMISGCAQNGKSRQALSLFNE 243 (538)
Q Consensus 170 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 243 (538)
+++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|...|++
T Consensus 83 --~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 --LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666665542 2 334566666677777777777777766542 43 45677888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C
Q 044988 244 MRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R 321 (538)
Q Consensus 244 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~ 321 (538)
+.+.. +-+..++..+...+...|+++.|...++.+.+. .|.+...+..+...+...|++++|...|++..+ |
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 98753 335788899999999999999999999999997 677888889999999999999999999987754 3
Q ss_pred -CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHH
Q 044988 322 -NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAF 399 (538)
Q Consensus 322 -~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 399 (538)
+..++..+...+...| ++++|...|+++.+. .| +..+|..+..+|.+.|++++|.
T Consensus 235 ~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQG--------------------LIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666665555 777888888888865 45 4778999999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 400 SLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 400 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.|+++. .+++..++..+...+...|++++|...++++ .+..|++...+. .++.+|.+.|++++|.+.++++.+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA-LEVFPEFAAAHS-NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-TTSCTTCHHHHH-HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999884 4567889999999999999999999999999 899999998788 999999999999999999999986
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8e-23 Score=204.89 Aligned_cols=424 Identities=9% Similarity=-0.037 Sum_probs=299.5
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhc
Q 044988 19 TTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHAR 95 (538)
Q Consensus 19 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 95 (538)
.+......+...|+++.|...++.+.+.. |++.++..+..+|.+.|++++|+..|++.. +.+...|..+..++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45566677888899999999999988876 578888888889999999999999888765 3455678888888899
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHH
Q 044988 96 SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCA 175 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a 175 (538)
.|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999888765 3455555555555544333333333333222221111111111100000111110001112
Q ss_pred HHHhhcCC---------CC-CchhHHHHHHHHHh---cCCHHHHHHHHccCCC----------------C-ChHHHHHHH
Q 044988 176 RLLFDDMP---------AR-SVVSWNSLLKGYVK---RGDIDGAWKIFDEMPH----------------R-NVVSWTTMI 225 (538)
Q Consensus 176 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li 225 (538)
...+.... .| +...+......+.. .|++++|...|+++.+ | +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222111 11 23344444444444 7899999998887543 1 234678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhC
Q 044988 226 SGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASC 305 (538)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (538)
..+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+. .|.+..++..+...|...
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL-----DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----CcCCHHHHHHHHHHHHHh
Confidence 89999999999999999998754 34778888888899999999999999998886 566777888899999999
Q ss_pred CCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHH
Q 044988 306 GEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHY 382 (538)
Q Consensus 306 g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 382 (538)
|++++|...|+++.+ | +... +..+...+...|++++|..+++.+.+.. +.+..++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 375 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFP--------------------YIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVP 375 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHH--------------------HHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHH
Confidence 999999999988754 2 2333 3444455566668888889999888652 2357788
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHchhccCCCCcccHHH
Q 044988 383 GCMVDLFSRAGLMDEAFSLVQNMP----MKPN----DAVLGSLLLGCRI---HNNAELASQVAQKLVAEIDPEQAAGYLA 451 (538)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 451 (538)
..+...|.+.|++++|.+.++++. ..|+ ...+..+...+.. .|++++|...++++ ....|++...+.
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~- 453 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA-SKLDPRSEQAKI- 453 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCTTCHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-HHhCcccHHHHH-
Confidence 999999999999999999998873 1222 4488889999999 99999999999999 888999998788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.++.+|.+.|++++|...+++..+.
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.4e-21 Score=197.03 Aligned_cols=420 Identities=10% Similarity=0.021 Sum_probs=308.4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHH
Q 044988 17 ALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGH 93 (538)
Q Consensus 17 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 93 (538)
...+..+...+...|+++.|...++.+.+... .++.++..+..+|.+.|++++|++.|++.. +.+...|..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34566677788888899999999998888753 367788888888888999999999888765 34566788888888
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC--CCCchhHHhHHHHHHHhcCCCCC
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASG--YCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
...|++++|+..|+.+.. .|+.. ...+..+...+....|...++.+.... ..+........+..+....+
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD--- 175 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC---
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC---
Confidence 888999999988863322 23222 122334444455677888887775531 01111122334455666667
Q ss_pred hhHHHHHhhcCCCCCch---hHHHHHHHHHh--------cCCHHHHHHHHccCCC--CC--------hHHHHHHHHHHHH
Q 044988 172 VGCARLLFDDMPARSVV---SWNSLLKGYVK--------RGDIDGAWKIFDEMPH--RN--------VVSWTTMISGCAQ 230 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~ 230 (538)
.+.+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..+|..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 77777777776665443 33333333322 2578999999988764 33 2357777788899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHH
Q 044988 231 NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEE 310 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 310 (538)
.|++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+. .|.+..++..+...|...|++++
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999884 566788888999999999999999999999987 67778888899999999999999
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Q 044988 311 AYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVD 387 (538)
Q Consensus 311 a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 387 (538)
|...|+++.+ .+...|..+...+...| ++++|..+++++.+.. +.+...+..+..
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 386 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQG--------------------KFTESEAFFNETKLKF--PTLPEVPTFFAE 386 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 9999998764 23445555555555555 7778888888888752 335778899999
Q ss_pred HhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHchhccCCCCcccH
Q 044988 388 LFSRAGLMDEAFSLVQNMP--------MKPNDAVLGSLLLGCRIH----------NNAELASQVAQKLVAEIDPEQAAGY 449 (538)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~p~~~~~~ 449 (538)
.|...|++++|.+.|+++. .......+......+... |++++|...++++ ....|++...+
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~ 465 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA-CELDPRSEQAK 465 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH-HHHCTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH-HHhCCCCHHHH
Confidence 9999999999999998863 111223344555667777 9999999999999 88999999888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 450 LALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 450 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
. .++.+|.+.|++++|.+.+++..+.
T Consensus 466 ~-~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 466 I-GLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8 9999999999999999999999874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.9e-21 Score=190.17 Aligned_cols=348 Identities=11% Similarity=0.067 Sum_probs=229.8
Q ss_pred cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHH
Q 044988 83 TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNL 162 (538)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (538)
...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3445555556666666666666666665432 2344555566666666666666666666666554 3344555555555
Q ss_pred HHhcCCCCChhHHHHHhhcCCCCCc------hhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHH
Q 044988 163 YLMSGGECGVGCARLLFDDMPARSV------VSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 163 ~~~~g~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 236 (538)
|.+.|+ +++|...|+++.+.++ ..|..+...+.. ..+..+...+...|++++
T Consensus 104 ~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 104 LLKQGK---LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHTTC---HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHH
T ss_pred HHHcCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHH
Confidence 555555 5555555555443211 333333332211 112233445666777788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
|+..|+++.+.. +.+...+..+..++.+.|+++.|...++.+.+. .|.+..++..++..|...|++++|...|+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----HCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888777777642 335667777777777888888888888777775 55667777788888888888888888888
Q ss_pred hcCC--CCcc-hHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-----HHHHHHHHHH
Q 044988 317 KMQR--RNTV-SWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-----IEHYGCMVDL 388 (538)
Q Consensus 317 ~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~ 388 (538)
++.+ |+.. .+..+ .... .......+...|...|++++|..+|+++.+. .|+ ...+..+..+
T Consensus 236 ~~~~~~p~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHY-KQVK-------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHCTTCHHHHHHH-HHHH-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHH-HHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 7754 3222 22222 1000 0122334466777778999999999999876 454 4578899999
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH-----------
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN----------- 455 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~----------- 455 (538)
+.+.|++++|.+.++++. ..| +...|..+..+|...|++++|...++++ .++.|+++..+. .++.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA-QEHNENDQQIRE-GLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTSSSCHHHHH-HHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCcchHHHHH-HHHHHHHHhhcccch
Confidence 999999999999999874 334 6899999999999999999999999999 999999998777 7773
Q ss_pred -HHHhcC-----ChHHHHHHHHHH
Q 044988 456 -VYAAAK-----RWQDVAAVRQKM 473 (538)
Q Consensus 456 -~~~~~g-----~~~~A~~~~~~m 473 (538)
.|...| +.+++.+.++++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hHHHHhCCCccCCHHHHHHHHHHH
Confidence 344445 566777777764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=185.60 Aligned_cols=306 Identities=11% Similarity=0.025 Sum_probs=255.7
Q ss_pred CCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHH
Q 044988 12 ATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQ 88 (538)
Q Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ 88 (538)
..|.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|+..|+++. +.+...|..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344566788888999999999999999999999874 3468899999999999999999999999876 345678999
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhCCCCCCc----chHHHH------------HHHHHccCCcHHHHHHHHHHHHhCCCCc
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDKETEPDE----YTYSFL------------LSVCARCGLFREGEQVHGRVLASGYCSN 152 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~ 152 (538)
+...|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++++.+.. +.+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 999999999999999999999875 3543 455555 344888999999999999999875 567
Q ss_pred hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHH--
Q 044988 153 VFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTM-- 224 (538)
Q Consensus 153 ~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~l-- 224 (538)
..++..+..+|.+.|+ +++|...|+++.+ .+..+|..+...|...|++++|...|+++.. | +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 177 AELRELRAECFIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253 (450)
T ss_dssp HHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8899999999999999 9999999998864 4678999999999999999999999998753 4 33445444
Q ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCC
Q 044988 225 ----------ISGCAQNGKSRQALSLFNEMRRARVGLD-----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREP 289 (538)
Q Consensus 225 ----------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 289 (538)
...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .|
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p 326 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc
Confidence 78899999999999999999884 454 447888889999999999999999999887 67
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHH
Q 044988 290 VLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMIT 331 (538)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~ 331 (538)
.+..++..+..+|...|++++|...|+++.+ | +...+..+..
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 7788889999999999999999999998865 3 3444554443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.2e-20 Score=184.41 Aligned_cols=390 Identities=11% Similarity=-0.023 Sum_probs=279.8
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE--NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCA 129 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 129 (538)
...+......+.+.|++++|+..|+++. .|+...|..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4566777788888999999999998876 4788888888999999999999999999988754 334568888888999
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----CCchhHHHH---HHHHHhcCC
Q 044988 130 RCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----RSVVSWNSL---LKGYVKRGD 202 (538)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~~~~~~~~l---i~~~~~~g~ 202 (538)
..|++++|...|+++.+.+ +++......++..+..... ...+.+.+..+.. ++...+... .........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQA---MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHH---HHHHTTC---------------------------CCCC
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999988876 4455555555555554444 4444333322211 000000000 000111111
Q ss_pred HHHHHHHHccCC---------CC-ChHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHH
Q 044988 203 IDGAWKIFDEMP---------HR-NVVSWTTMISGCAQ---NGKSRQALSLFNEMRR-----ARVG--------LDQVAL 256 (538)
Q Consensus 203 ~~~A~~~~~~m~---------~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~ 256 (538)
...+...+.... .| +...+......+.. .|++++|...|+++.+ ..-. .+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 122222222221 12 23445555555554 8999999999999987 3112 234567
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHH
Q 044988 257 VAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGF 333 (538)
Q Consensus 257 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~ 333 (538)
..+...+...|+++.|...++.+.+. .|. ...+..+...|...|++++|...++++.+ .+...+..+...+
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIEL-----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH-----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh-----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 78888899999999999999999987 344 78888999999999999999999998765 2445566666666
Q ss_pred HhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCH
Q 044988 334 AKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPND 411 (538)
Q Consensus 334 ~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~ 411 (538)
...| ++++|...++++.+.. +.+..++..+...|...|++++|.+.++++. .+.+.
T Consensus 315 ~~~~--------------------~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 315 FILQ--------------------NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HHTT--------------------CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHhC--------------------CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 6655 6666678888877541 2357789999999999999999999999874 23456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc------cHHHHHHHHHHh---cCChHHHHHHHHHHHhC
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA------GYLALVANVYAA---AKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 476 (538)
..+..+...+...|++++|...++++ ....|+++. .+. .++.+|.. .|++++|...++++.+.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAPLV-GKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHHHH-HHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHHHH-HHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 78889999999999999999999999 777777754 678 89999999 99999999999999874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=4.7e-19 Score=178.52 Aligned_cols=384 Identities=10% Similarity=0.020 Sum_probs=283.6
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVC 128 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 128 (538)
...+..+...+.+.|++++|+..|++.. +.+...|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4567778888999999999999998876 3467788999999999999999999999998754 34567888899999
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC------CchhHHHHHHHHHhcCC
Q 044988 129 ARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR------SVVSWNSLLKGYVKRGD 202 (538)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~ 202 (538)
...|++++|...++ .... .|+. ....+..+...+. ...|...++++... ........+..+....+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~---~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNL---NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHH---HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHH---HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999996 3322 2222 1222344455555 67778877776542 22234455666777888
Q ss_pred HHHHHHHHccCCCCChH---HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHH
Q 044988 203 IDGAWKIFDEMPHRNVV---SWTTMISGCAQ--------NGKSRQALSLFNEMRRARVGLD--------QVALVAALSAC 263 (538)
Q Consensus 203 ~~~A~~~~~~m~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~ 263 (538)
.+.+...+......+.. ....+...+.. .|++++|..+|+++.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 88888888887764433 33333333222 25789999999999874 344 23466677778
Q ss_pred HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCcc
Q 044988 264 AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQ 340 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 340 (538)
...|+++.|...++.+.+. .|. ...+..+...|...|++++|...|+++.+ .+..+|..+...+...|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 324 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL-----HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--- 324 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred HhcccHHHHHHHHHHHHhc-----CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---
Confidence 8899999999999999987 344 67788899999999999999999998764 34445555555555555
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 044988 341 EALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSL 417 (538)
Q Consensus 341 ~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 417 (538)
++++|...|+++.+. .| +...+..+..+|...|++++|.+.++++. .+.+...+..+
T Consensus 325 -----------------~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 325 -----------------DYKNAKEDFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp -----------------CHHHHHHHHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 777788888888765 34 46789999999999999999999999874 33446788889
Q ss_pred HHHHHhcCCHHHHHHHHHHchhccCCCCcccHH-----HHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 044988 418 LLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL-----ALVANVYAAA----------KRWQDVAAVRQKMIKM 476 (538)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~-----~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 476 (538)
...+...|++++|...++++ ....|++...+. ..++.++.+. |++++|...+++..+.
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIA-KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH-HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999 666666554332 1445778888 9999999999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.9e-18 Score=159.29 Aligned_cols=333 Identities=11% Similarity=0.043 Sum_probs=242.1
Q ss_pred cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHH
Q 044988 83 TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNL 162 (538)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (538)
+..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567778888888999999999999888753 3456688888888888899999999998888874 4456777788888
Q ss_pred HHhcCCCCChhHHHHHhhcCCCCCc---h---hHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHH
Q 044988 163 YLMSGGECGVGCARLLFDDMPARSV---V---SWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 163 ~~~~g~~~~~~~a~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 236 (538)
+...|+ +++|...|++..+.++ . .+..+.... . ...+..+...+...|++++
T Consensus 81 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 81 LLKQGK---LDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHTC---HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCC---hHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------HHHHHHHHHHHHHccCHHH
Confidence 888888 8888777776654322 1 111111110 0 1123334667788888899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFR 316 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (538)
|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+...+..+...|...|++++|...|+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 998888887753 345677788888888889999998888888876 67777788888888999999999999888
Q ss_pred hcCC--CC-cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-H----HHHHHHHHH
Q 044988 317 KMQR--RN-TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-I----EHYGCMVDL 388 (538)
Q Consensus 317 ~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~ 388 (538)
+..+ |+ ...+..+...- .......+...+...|++++|...++++.+. .|+ . ..+..+..+
T Consensus 213 ~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 213 ECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHhhCccchHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 7764 22 22222111100 0122233455667778999999999998876 343 2 345567889
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHH
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYA 458 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 458 (538)
+...|++++|.+.+++.. ..| +..++..+...+...|++++|...++++ .+..|++...+. .+..+..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-~~~~p~~~~~~~-~l~~~~~ 351 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA-QEHNENDQQIRE-GLEKAQR 351 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTCHHHHH-HHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCChHHHH-HHHHHHH
Confidence 999999999999998874 234 6788999999999999999999999999 999999888666 6655543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.9e-17 Score=155.12 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=214.7
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHH
Q 044988 118 EYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGY 197 (538)
Q Consensus 118 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 197 (538)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+ +++|...|++..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~------------ 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGK---SKAALPDLTKVIAL------------ 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh------------
Confidence 3456667777777888888888888877764 4445566666666666666 66666655443210
Q ss_pred HhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HH
Q 044988 198 VKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGL----DQVALVAA------------LS 261 (538)
Q Consensus 198 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~ 261 (538)
...+...|..+...+...|++++|...|+++.+. .| +...+..+ ..
T Consensus 67 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 67 ----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445666666666667777777777666653 33 22222222 56
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGY 338 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 338 (538)
.+...|+++.|...++.+.+. .|.+..++..+...+...|++++|...++++.+ .+...+..+...+...|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 202 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG- 202 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT-
T ss_pred HHHHccCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 788999999999999999987 677788889999999999999999999998775 34455556666665555
Q ss_pred ccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHH------------HHHHHhhhcCChHHHHHHHHhC
Q 044988 339 AQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYG------------CMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 339 ~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
++++|...|+...+. .|+ ...+. .+...+.+.|++++|.+.++++
T Consensus 203 -------------------~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 203 -------------------DHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp -------------------CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666667777777654 232 22222 3367789999999999999987
Q ss_pred C-CCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 406 P-MKPN-D----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 406 ~-~~p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
. ..|+ . ..+..+...+...|++++|...++++ ....|+++..+. .++.+|.+.|++++|.+.+++..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 261 MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV-LQMEPDNVNALK-DRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCcccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4 3344 2 23445777899999999999999999 888999999888 9999999999999999999999874
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.2e-18 Score=160.05 Aligned_cols=284 Identities=14% Similarity=0.166 Sum_probs=125.8
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHH
Q 044988 64 TSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGR 143 (538)
Q Consensus 64 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 143 (538)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999555 4899999999999999999999964 36777999999999999999999998877
Q ss_pred HHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHH
Q 044988 144 VLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTT 223 (538)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 223 (538)
..+. .+++.+.+.++.+|.+.|+ ++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~---l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNR---LAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp ------------------------C---HHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCC---HHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 7764 4567888999999999999 9888887763 67779999999999999999999999987 37999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYA 303 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (538)
++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ...+.-...++..|.
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhhHHHHHHHHH
Confidence 999999999999999999988 27889999999999999999995543321 122222346888999
Q ss_pred hCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc---
Q 044988 304 SCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP--- 377 (538)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--- 377 (538)
+.|++++|..+++....- ....|+-+.-+|++-+ -+++.+..+.|. .+-+++|
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~------------------p~k~~ehl~~~~---~~ini~k~~~ 277 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK------------------PQKMREHLELFW---SRVNIPKVLR 277 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC------------------HHHHHHHHHHHS---TTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC------------------HHHHHHHHHHHH---HHhcCcHHHH
Confidence 999999999999987653 3445555555555432 223333444433 2224444
Q ss_pred ---cHHHHHHHHHHhhhcCChHHHHHHHHh
Q 044988 378 ---RIEHYGCMVDLFSRAGLMDEAFSLVQN 404 (538)
Q Consensus 378 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (538)
+...|..+.-.|...++++.|....-+
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 356788888889999999988765543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.9e-17 Score=154.11 Aligned_cols=84 Identities=7% Similarity=-0.013 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
+..++..+..+|...|++++|.+.+++.. .+.+...+..+...+...|++++|.+.++++ .++.|+++..+. .++.
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~ 312 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA-LGLRRDDTFSVT-MLGH 312 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-TTTCSCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH-HccCCCchHHHH-HHHH
Confidence 45678888888888888888888888763 2335677888888888889999999999988 888888888677 7777
Q ss_pred HH-HhcCCh
Q 044988 456 VY-AAAKRW 463 (538)
Q Consensus 456 ~~-~~~g~~ 463 (538)
++ ...|+.
T Consensus 313 ~~~~~~g~~ 321 (330)
T 3hym_B 313 CIEMYIGDS 321 (330)
T ss_dssp HHHTTTTC-
T ss_pred HHHHHhCch
Confidence 77 344543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=3.8e-18 Score=159.57 Aligned_cols=280 Identities=13% Similarity=0.145 Sum_probs=138.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHH
Q 044988 27 LQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLY 106 (538)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 106 (538)
+...+++++|.++++.+ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+..+
T Consensus 13 l~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34667889999999987 34469999999999999999999999664 67779999999999999999999988
Q ss_pred HHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCC
Q 044988 107 KQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARS 186 (538)
Q Consensus 107 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~ 186 (538)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|. +++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~---yeeA~~~Y~~a---- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM---YDAAKLLYNNV---- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------C---TTTHHHHHHHT----
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHh----
Confidence 877764 5668889999999999999999988874 4777899999999999999 99999999988
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEI 266 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 266 (538)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|......+ .+.|+ -...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad--~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI---VVHAD--ELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHH--HHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHh--hHHHHHHHHHHC
Confidence 489999999999999999999999983 8899999999999999999996655542 23444 355788999999
Q ss_pred CChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhC--CCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhc
Q 044988 267 GDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASC--GEIEEAYGVFRKMQR--------RNTVSWTSMITGFAKQ 336 (538)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~ 336 (538)
|++++|..+++..... .+.....|+-|.-+|++- +++.+..+.|..-.. .+...|.-+...|...
T Consensus 221 G~~eEai~lLe~aL~l-----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 221 GYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998876 477888888888888865 345555555543332 2577899999999999
Q ss_pred CCccHHH
Q 044988 337 GYAQEAL 343 (538)
Q Consensus 337 ~~~~~a~ 343 (538)
++++.|.
T Consensus 296 ~e~d~A~ 302 (449)
T 1b89_A 296 EEYDNAI 302 (449)
T ss_dssp TCHHHHH
T ss_pred chHHHHH
Confidence 9999887
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.9e-17 Score=153.29 Aligned_cols=275 Identities=11% Similarity=-0.014 Sum_probs=201.7
Q ss_pred CCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 044988 49 SQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLL 125 (538)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 125 (538)
+.++..+..+...+...|++++|+++|+++. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3455566666666777777777777776654 2344456666667777777777777777776642 33455667777
Q ss_pred HHHHccC-CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcC
Q 044988 126 SVCARCG-LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRG 201 (538)
Q Consensus 126 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 201 (538)
..+...| ++++|...+++..+.. +.+...+..+..++...|+ +++|...|++..+ .+...+..+...+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 7777777 7777777777777654 3445667777777777777 7777777776553 24556666777788888
Q ss_pred CHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCChH
Q 044988 202 DIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR--------VGLDQVALVAALSACAEIGDLK 270 (538)
Q Consensus 202 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~~~~~ 270 (538)
++++|...|++..+ .+...+..+...+...|++++|...|+++.+.. .+.+..++..+...+...|+++
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888877543 456788889999999999999999999887631 1334578888899999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHH
Q 044988 271 LGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGF 333 (538)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~ 333 (538)
.|...++.+.+. .|.+...+..+...|...|++++|.+.|++..+ | +...+..+..++
T Consensus 254 ~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 999999999987 566778888999999999999999999999876 3 455666666666
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=4.4e-16 Score=154.63 Aligned_cols=376 Identities=11% Similarity=-0.034 Sum_probs=289.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHc----cCChhHHHHHHhcCC-CCCcchHHHHHHHHhc----CCCchHHHHHHH
Q 044988 37 FQIHSQIIINGFSQKNYILAKLLAFYVT----SGYLINAHKVFEKTE-NPSTAIWNQMIRGHAR----SETPEKSVYLYK 107 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~ 107 (538)
...+....+. -++..+..+...|.. .+++++|...|++.. ..+...+..|...|.. .+++++|..+|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444444443 367778888888887 899999999998765 3566788888888888 899999999999
Q ss_pred HhHhCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCCCChhHHHHHh
Q 044988 108 QMIDKETEPDEYTYSFLLSVCAR----CGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLM----SGGECGVGCARLLF 179 (538)
Q Consensus 108 ~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~a~~~~ 179 (538)
+..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++ .++|...|
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 174 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD---YVMAREWY 174 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC---HHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 998764 56677778888877 789999999999998876 56677888888887 667 99999999
Q ss_pred hcCCC-CCchhHHHHHHHHHh----cCCHHHHHHHHccCCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 044988 180 DDMPA-RSVVSWNSLLKGYVK----RGDIDGAWKIFDEMPH-RNVVSWTTMISGCAQ----NGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 180 ~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 249 (538)
++..+ .+...+..+...|.. .++.++|..+|++..+ .+..++..+...|.. .+++++|..+|++..+.|
T Consensus 175 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 175 SKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 87664 367788888888887 8999999999988653 566778888888886 789999999999988754
Q ss_pred CCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhC-----CCHHHHHHHHHhcCC
Q 044988 250 GLDQVALVAALSACAE----IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASC-----GEIEEAYGVFRKMQR 320 (538)
Q Consensus 250 ~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~ 320 (538)
+...+..+...+.. .++.++|...++...+. + +...+..+...|... +++++|...|++..+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 44566666666766 78999999999888765 3 334556788888887 899999999988765
Q ss_pred C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhh----cCCh
Q 044988 321 R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSR----AGLM 395 (538)
Q Consensus 321 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 395 (538)
. +...+..+...|...|.. .+.++|...|++..+. .+...+..|...|.. .+++
T Consensus 325 ~~~~~a~~~lg~~y~~~g~~-----------------~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 325 QGDATAQANLGAIYFRLGSE-----------------EEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp TTCHHHHHHHHHHHHHSCCH-----------------HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cCCHHHHHHHHHHHHhCCCc-----------------ccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCH
Confidence 3 444555555555443311 2778899999988864 357788888888888 8999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhccCCC---CcccHHHHHHHHH
Q 044988 396 DEAFSLVQNMPMKPNDAVLGSLLLGCRI----HNNAELASQVAQKLVAEIDPE---QAAGYLALVANVY 457 (538)
Q Consensus 396 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~l~~~~ 457 (538)
++|.+.|++.....+...+..+...+.. .++.++|...|+++ .+..|+ ++.... .++.++
T Consensus 384 ~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~~~~~~~~~a~~-~l~~~~ 450 (490)
T 2xm6_A 384 QQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA-STNDMNLFGTENRNI-TEKKLT 450 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHHHCCHHHHHHHHH-HHTTSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HHCCCCCcCCHHHHH-HHHhcC
Confidence 9999999987545578888888888888 89999999999999 666643 554344 444433
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.8e-15 Score=150.38 Aligned_cols=404 Identities=8% Similarity=0.016 Sum_probs=240.9
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHHH-hc
Q 044988 19 TTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN--PSTAIWNQMIRGH-AR 95 (538)
Q Consensus 19 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~-~~ 95 (538)
.+..++.. ...++++.|..+++.+++.- +.+...|..++..+.+.|++++|..+|++... |+...|...+... ..
T Consensus 15 ~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~ 92 (530)
T 2ooe_A 15 AWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRET 92 (530)
T ss_dssp HHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 44445543 45566666666666666542 33455666666666666677777776666552 5555555555322 23
Q ss_pred CCCchHHHH----HHHHhHhC-CCCC-CcchHHHHHHHHHc---------cCCcHHHHHHHHHHHHhCCCCchhHHhHHH
Q 044988 96 SETPEKSVY----LYKQMIDK-ETEP-DEYTYSFLLSVCAR---------CGLFREGEQVHGRVLASGYCSNVFIRTNLM 160 (538)
Q Consensus 96 ~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 160 (538)
.|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.++....+....|....
T Consensus 93 ~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~ 172 (530)
T 2ooe_A 93 KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYN 172 (530)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 455555544 55554432 3333 23345555554433 456666666666666521111112222222
Q ss_pred HHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHcc-------CC------CCC--------hH
Q 044988 161 NLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDE-------MP------HRN--------VV 219 (538)
Q Consensus 161 ~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~------~~~--------~~ 219 (538)
......| ...+..++. .+.+++..|..++.. +. .|+ ..
T Consensus 173 ~~e~~~~----~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 173 KYEEGIN----IHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHC----HHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHhhc----hhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 2111111 001111111 123345555544433 11 122 23
Q ss_pred HHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHHH
Q 044988 220 SWTTMISGCAQN----GKS----RQALSLFNEMRRARVGLDQVALVAALSACAE-------IGDLK-------LGKWIHS 277 (538)
Q Consensus 220 ~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~ 277 (538)
.|...+...... ++. .+|..+|++.... .+-+...|......+.+ .|+++ .|..+++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 555555443332 232 4778888888874 23356677777776664 68877 8888998
Q ss_pred HHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-c-chHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 044988 278 YVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN-T-VSWTSMITGFAKQGYAQEALLTFLGVLSAC 353 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~~ll~~~ 353 (538)
...+. ..|.+...|..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+
T Consensus 311 ~Al~~----~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------- 366 (530)
T 2ooe_A 311 RAIST----LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-------------------- 366 (530)
T ss_dssp HHTTT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH--------------------
T ss_pred HHHHH----hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH--------------------
Confidence 88863 3677888898999999999999999999998765 22 1 2344444333
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHH-hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 044988 354 SHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDL-FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 429 (538)
.+.|+++.|..+|++..+. .|+ ...|...+.. +...|+.++|..+|++.. ..| +...|..++..+.+.|+.++
T Consensus 367 ~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 3445788888999988754 343 3333332222 346899999999998763 334 47888889999999999999
Q ss_pred HHHHHHHchhccCCCCcc----cHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 430 ASQVAQKLVAEIDPEQAA----GYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|..+|+++ ....|.++. .|. ..+....+.|+.+.+..+.+++.+
T Consensus 444 Ar~~~~~a-l~~~~~~~~~~~~lw~-~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 444 TRVLFERV-LTSGSLPPEKSGEIWA-RFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH-HHSCCSCGGGCHHHHH-HHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhccCCCHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999 666555443 455 556777788999999999988875
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.1e-14 Score=151.83 Aligned_cols=409 Identities=12% Similarity=0.119 Sum_probs=286.7
Q ss_pred CCccccHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHH
Q 044988 14 SSKALTTRQIFSLLQIRNTTKTLFQIHSQIIING--FSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIR 91 (538)
Q Consensus 14 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 91 (538)
..++.--+...+++...|.+.++.++++...-.+ +.-+....+.|+....+. +.....+..++..+-+ ...+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 3344455677788888888888888888888432 112345555566555554 3344444444443222 445677
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
.+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++...|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~--- 1120 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM--- 1120 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC---
Confidence 7888899999999998852 11122233322 667888888887754 346688899999999999
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (538)
+++|...|.+. .|...|..++.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. +
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 99999999664 5777888899999999999999999976443 33334445888899988887543332 2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHH
Q 044988 250 GLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSM 329 (538)
Q Consensus 250 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 329 (538)
.|+...|..+...|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHH
Confidence 456667778888899999999999988874 25678999999999999999999987 556888888
Q ss_pred HHHHHhcCCccHHH----------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhc--CChH
Q 044988 330 ITGFAKQGYAQEAL----------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRA--GLMD 396 (538)
Q Consensus 330 i~~~~~~~~~~~a~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~~ 396 (538)
..+|...|++..|. ..+..++..|...|.+++|..+++... ++.| ....|+.|..+|++. ++..
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 88898888888887 345677788999999999999998776 4455 355777777777654 5667
Q ss_pred HHHHHHHhCC-CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHc--------h---hccCCCCcccHHHHHHHHHH
Q 044988 397 EAFSLVQNMP-MK------PNDAVLGSLLLGCRIHNNAELASQVAQKL--------V---AEIDPEQAAGYLALVANVYA 458 (538)
Q Consensus 397 ~A~~~~~~~~-~~------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~---~~~~p~~~~~~~~~l~~~~~ 458 (538)
++.++|..-. .. -+...|.-+.-.|.+.|+++.|...+-+- . .-.++.++..|. -.+..|.
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy-kai~Fyl 1412 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY-RAIQFYL 1412 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH-HHHHHHH
Confidence 7777776543 22 24677888999999999999988322221 1 112455555555 4445555
Q ss_pred hcC---------------ChHHHHHHHH
Q 044988 459 AAK---------------RWQDVAAVRQ 471 (538)
Q Consensus 459 ~~g---------------~~~~A~~~~~ 471 (538)
..+ +.+++.++++
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 555 6666666665
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=3.3e-15 Score=149.90 Aligned_cols=380 Identities=10% Similarity=0.035 Sum_probs=251.8
Q ss_pred ccccCCCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH-HccCChhHHHH----HHhcC
Q 044988 4 EEIIPANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFY-VTSGYLINAHK----VFEKT 78 (538)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~ 78 (538)
++.+...|. +...+...+..+.+.++++.|..+|+..++.. |+...|...+... ...|+.++|.+ +|++.
T Consensus 36 e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~a 110 (530)
T 2ooe_A 36 ERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFA 110 (530)
T ss_dssp HHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 344444443 34577788888999999999999999998875 5777787777533 45677777665 66653
Q ss_pred C------CCCcchHHHHHHHHhc---------CCCchHHHHHHHHhHhCCCCCCc---chHHHHHHHHHcc---------
Q 044988 79 E------NPSTAIWNQMIRGHAR---------SETPEKSVYLYKQMIDKETEPDE---YTYSFLLSVCARC--------- 131 (538)
Q Consensus 79 ~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~--------- 131 (538)
. .++...|...+....+ .|+++.|..+|++..+ .|+. ..|..........
T Consensus 111 l~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---~P~~~~~~~~~~~~~~e~~~~~~~~~~~l 187 (530)
T 2ooe_A 111 LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---NPMINIEQLWRDYNKYEEGINIHLAKKMI 187 (530)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT---SCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHhhchhHHHHHH
Confidence 2 2456678887776654 6889999999999987 2432 2333322211111
Q ss_pred ----CCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC---CCC--------chhHHHHHHH
Q 044988 132 ----GLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP---ARS--------VVSWNSLLKG 196 (538)
Q Consensus 132 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~---~~~--------~~~~~~li~~ 196 (538)
+++..|..++... +.....++... .|+ ...|...+..
T Consensus 188 ~~~~~~~~~A~~~~~~~----------------------------~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 188 EDRSRDYMNARRVAKEY----------------------------ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp HTTHHHHHHHHHHHHHH----------------------------HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH----------------------------HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 1122222222221 11111222211 111 1344444433
Q ss_pred HHhc----CCH----HHHHHHHccCCC---CChHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCC
Q 044988 197 YVKR----GDI----DGAWKIFDEMPH---RNVVSWTTMISGCAQ-------NGKSR-------QALSLFNEMRRARVGL 251 (538)
Q Consensus 197 ~~~~----g~~----~~A~~~~~~m~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p 251 (538)
.... ++. ..+..+|++... .+...|..++..+.+ .|+++ +|..+|++..+.-.+-
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2221 222 356667766543 356678888777765 68876 8999999987632233
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc-hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHH
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL-VSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMI 330 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li 330 (538)
+...+..++..+.+.|+++.|..+|+.+.+. .|.+ ..+|..++..+.+.|++++|.++|++..+.....+...+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 5777888888888999999999999999886 4444 357888888899999999999999988763222211111
Q ss_pred HHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC---
Q 044988 331 TGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--- 406 (538)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 406 (538)
. ...+ .+...|+.+.|..+|+...+. .| +...|..++..+.+.|+.++|..+|++..
T Consensus 395 ~---------------~a~~-~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 395 T---------------AALM-EYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp H---------------HHHH-HHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred H---------------HHHH-HHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 0 0001 112356889999999998876 35 57889999999999999999999999874
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 407 -MKPN--DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 407 -~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
..|+ ...|...+......|+.+.+..+.+++ .+..|+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~-~~~~p~ 495 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRR-FTAFRE 495 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH-HHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCch
Confidence 1232 458888888889999999999999999 777774
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.6e-16 Score=151.71 Aligned_cols=270 Identities=12% Similarity=0.037 Sum_probs=204.2
Q ss_pred hhHHHH-HhhcCCC--C-----CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 044988 172 VGCARL-LFDDMPA--R-----SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSL 240 (538)
Q Consensus 172 ~~~a~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~ 240 (538)
+++|.. .|++... + +...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|...
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 120 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 120 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 677776 6665443 1 345677788888888888888888888653 3556788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH---------------HHHHHHhC
Q 044988 241 FNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA---------------LIHMYASC 305 (538)
Q Consensus 241 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 305 (538)
|+++.+.. +.+..++..+...+...|+++.|...++.+.+. .|.+...+.. .+..+...
T Consensus 121 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 121 LRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 99888753 346778888888888899999999999888876 3333332221 13333488
Q ss_pred CCHHHHHHHHHhcCC--CC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cH
Q 044988 306 GEIEEAYGVFRKMQR--RN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RI 379 (538)
Q Consensus 306 g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 379 (538)
|++++|...|+++.+ |+ ..++..+...+...| ++++|...|+++.+. .| +.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~---~~~~~ 251 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--------------------EYDKAVDCFTAALSV---RPNDY 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHH---CTTCH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHh---CcCCH
Confidence 999999999998764 32 445555555555554 777788888888765 34 57
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC-----------c
Q 044988 380 EHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ-----------A 446 (538)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~-----------~ 446 (538)
.++..+...|...|++++|.+.|+++. . +.+...+..+...+...|++++|...++++ ....|++ .
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhh
Confidence 899999999999999999999999874 2 345788999999999999999999999999 7777776 6
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHH
Q 044988 447 AGYLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
..+. .++.+|...|++++|..++++
T Consensus 331 ~~~~-~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWS-TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHH-HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHH-HHHHHHHHhCChHhHHHhHHH
Confidence 6678 999999999999999988764
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.4e-16 Score=150.45 Aligned_cols=271 Identities=11% Similarity=-0.018 Sum_probs=213.7
Q ss_pred HHccCChhHHHH-HHhcCCC-----C--CcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC
Q 044988 62 YVTSGYLINAHK-VFEKTEN-----P--STAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL 133 (538)
Q Consensus 62 ~~~~g~~~~a~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 133 (538)
+...|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888988 8875542 2 35678889999999999999999999999864 4466788999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHH---------------HHH
Q 044988 134 FREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNS---------------LLK 195 (538)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~---------------li~ 195 (538)
+++|...++++.+.. +.+..++..+..+|...|+ .++|...|+++.+. +...+.. .+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 999999999999886 5678899999999999999 99999999886642 2222221 233
Q ss_pred HHHhcCCHHHHHHHHccCCC--C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 044988 196 GYVKRGDIDGAWKIFDEMPH--R---NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLK 270 (538)
Q Consensus 196 ~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 270 (538)
.+...|++++|...|+++.+ | +..++..+...|...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 34489999999999998753 3 46789999999999999999999999998752 335788999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C-----------cchHHHHHHHHHhc
Q 044988 271 LGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-N-----------TVSWTSMITGFAKQ 336 (538)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~-----------~~~~~~li~~~~~~ 336 (538)
.|...++.+.+. .|.+..++..+..+|.+.|++++|...|+++.+ | + ..+|..+..+|...
T Consensus 269 ~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 269 EAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 999999999987 677788889999999999999999999998764 2 2 46777777788877
Q ss_pred CCccHHH
Q 044988 337 GYAQEAL 343 (538)
Q Consensus 337 ~~~~~a~ 343 (538)
|+.++|.
T Consensus 344 g~~~~A~ 350 (368)
T 1fch_A 344 GQSDAYG 350 (368)
T ss_dssp TCGGGHH
T ss_pred CChHhHH
Confidence 7777665
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2.2e-14 Score=142.39 Aligned_cols=357 Identities=11% Similarity=0.024 Sum_probs=285.4
Q ss_pred CCCcchHHHHHHHHhc----CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCC
Q 044988 80 NPSTAIWNQMIRGHAR----SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCAR----CGLFREGEQVHGRVLASGYCS 151 (538)
Q Consensus 80 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~ 151 (538)
..+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4567777778888877 899999999999998864 56688888888888 899999999999999876
Q ss_pred chhHHhHHHHHHHh----cCCCCChhHHHHHhhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHccCCC-CChHHH
Q 044988 152 NVFIRTNLMNLYLM----SGGECGVGCARLLFDDMPAR-SVVSWNSLLKGYVK----RGDIDGAWKIFDEMPH-RNVVSW 221 (538)
Q Consensus 152 ~~~~~~~l~~~~~~----~g~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~ 221 (538)
+...+..|...|.. .++ .++|...|++..+. +...+..+...|.. .+++++|...|++..+ .+...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 56677788888888 677 99999999887654 66778888888887 8899999999988653 567788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhccCCCCCcchh
Q 044988 222 TTMISGCAQ----NGKSRQALSLFNEMRRARVGLDQVALVAALSACAE----IGDLKLGKWIHSYVEENFSVGREPVLVS 293 (538)
Q Consensus 222 ~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (538)
..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++++.|...++...+. +. ..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~---~~ 256 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GN---SI 256 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TC---HH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC---HH
Confidence 888888888 899999999999998865 55667777777775 78999999999988775 32 34
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHH
Q 044988 294 LNNALIHMYAS----CGEIEEAYGVFRKMQRR-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFEC 368 (538)
Q Consensus 294 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (538)
.+..+...|.. .++.++|...|++..+. +...+..+...|.... ....+++++|...|++
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~---------------~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA---------------EGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCB---------------TTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC---------------CCCcCCHHHHHHHHHH
Confidence 55567788887 89999999999987653 4445555555554430 0112588899999998
Q ss_pred hhhhcCCCccHHHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhcc
Q 044988 369 MNQNWGIKPRIEHYGCMVDLFSRAG---LMDEAFSLVQNMPMKPNDAVLGSLLLGCRI----HNNAELASQVAQKLVAEI 441 (538)
Q Consensus 369 ~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 441 (538)
..+. + +...+..|...|...| +.++|.+.|++.....+...+..+...+.. .+++++|...+++. .+.
T Consensus 322 a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A-~~~ 396 (490)
T 2xm6_A 322 SAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA-AEQ 396 (490)
T ss_dssp HHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHT
T ss_pred HHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HhC
Confidence 8765 3 4567778888887766 789999999988645678889999999988 89999999999999 553
Q ss_pred CCCCcccHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044988 442 DPEQAAGYLALVANVYAA----AKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 442 ~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 478 (538)
.++..+. .|+.+|.+ .++.++|...|++..+.+.
T Consensus 397 --~~~~a~~-~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 --GLSAAQV-QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp --TCHHHHH-HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3455577 89999998 8999999999999998764
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.6e-16 Score=150.00 Aligned_cols=242 Identities=10% Similarity=-0.029 Sum_probs=191.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 217 NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHH
Confidence 44568888889999999999999999998753 346788888999999999999999999999887 677788888
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQRRNT---VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+...|...|++++|...|+++.+.++ ..+..+. .....+..+...+...|++++|..+|+++.+..
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc----------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999998865221 1111110 000234445667778889999999999998773
Q ss_pred CCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHH
Q 044988 374 GIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLA 451 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 451 (538)
.-.++..++..+...|...|++++|.+.|+++. .+.+..+|..+..++...|++++|+..++++ ....|++...+.
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~- 285 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA-LEIQPGFIRSRY- 285 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCchHHHH-
Confidence 222258899999999999999999999999874 3445889999999999999999999999999 899999999888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.++.+|.+.|++++|...+++..+.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999753
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.7e-16 Score=151.26 Aligned_cols=257 Identities=9% Similarity=-0.010 Sum_probs=202.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 186 SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
+...|..+...+.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456688889999999999999999998763 466789999999999999999999999998753 3357888999999
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHH----------HHHHHHHHhCCCHHHHHHHHHhcCC--C---CcchHH
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLN----------NALIHMYASCGEIEEAYGVFRKMQR--R---NTVSWT 327 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~ 327 (538)
+...|+++.|...++.+.+. .|.+...+ ..+...+...|++++|...|+++.+ | +...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ-----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh-----CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 99999999999999999886 33333322 3458889999999999999998875 3 345555
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP- 406 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 406 (538)
.+...|...| ++++|...|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.
T Consensus 218 ~l~~~~~~~g--------------------~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 218 GLGVLFHLSG--------------------EFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHT--------------------CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------------------CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555 7778888888887651 3358899999999999999999999999874
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC------------CcccHHHHHHHHHHhcCChHHHHHHHHH
Q 044988 407 MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE------------QAAGYLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 407 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
..| +..++..+...+...|++++|...++++ ..+.|+ ....+. .++.++...|+.+.+.++.++
T Consensus 276 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWA-ALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHCC------------CHHHH-HHHHHHHHHTCHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCcccCCCcccchhhhHHHHHH-HHHHHHHHcCcHHHHHHHHHh
Confidence 344 4888999999999999999999999999 666665 244567 899999999999988887655
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.5e-15 Score=137.54 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=197.6
Q ss_pred HhcCCCCChhHHHHHhhcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 044988 164 LMSGGECGVGCARLLFDDMPARSV----VSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALS 239 (538)
Q Consensus 164 ~~~g~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 239 (538)
...|+ +..|+..++.....++ .....+.++|...|+++.|+..++....|+..++..+...+...++.++|++
T Consensus 10 ~~~g~---y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 10 FYIGS---YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHTTC---HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHH---HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34566 7777777666554322 2334566788888888888888877555666778888888888899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 240 LFNEMRRARVGLD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 240 ~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.++++...+..|+ ...+..+...+...|++++|...++. |.+...+..++..|.+.|++++|.+.|+++
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999888776564 44555566778888999999887754 566677788888999999999999999888
Q ss_pred CC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChH
Q 044988 319 QR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMD 396 (538)
Q Consensus 319 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 396 (538)
.+ |+. +...+..++. ..+...|++++|..+|+++.+.. +.+...++.+..++.+.|+++
T Consensus 157 ~~~~p~~-~~~~l~~a~~----------------~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 157 QDQDEDA-TLTQLATAWV----------------SLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHHCTTC-HHHHHHHHHH----------------HHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HhhCcCc-HHHHHHHHHH----------------HHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHH
Confidence 65 332 1222222221 11223468899999999998762 446888999999999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 397 EAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAEL-ASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 397 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
+|.+.|+++. ..| +..++..++..+...|+.++ +.++++++ ....|+++. .. +...+.+.++++..-|
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~-~~~~P~~~~-~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL-KDAHRSHPF-IK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCTTCHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCCChH-HH----HHHHHHHHHHHHHHHc
Confidence 9999999863 344 57788899989888998865 67899999 999999877 33 4566666677666544
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=5.4e-14 Score=146.76 Aligned_cols=403 Identities=11% Similarity=0.114 Sum_probs=276.9
Q ss_pred ccHHHHHHHHhccCChHHHHH-----------HHHHHHHhCC--CCChhHHHHHHHHHHccCChhHHHHHHhcCC-CCC-
Q 044988 18 LTTRQIFSLLQIRNTTKTLFQ-----------IHSQIIINGF--SQKNYILAKLLAFYVTSGYLINAHKVFEKTE-NPS- 82 (538)
Q Consensus 18 ~~~~~ll~~~~~~~~~~~a~~-----------~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~- 82 (538)
..|....+.+.+..+++.-.. +.++.....+ ..++.-....+..|...|.+.+|+++++++. .|+
T Consensus 938 ~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~ 1017 (1630)
T 1xi4_A 938 SLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1017 (1630)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 345555555665555544333 2233222221 2345555667788888888888888888776 332
Q ss_pred ----cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhH
Q 044988 83 ----TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTN 158 (538)
Q Consensus 83 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (538)
...-+.++.+..+. +..+..+..++.... ...-+...+...|.+++|..+|++.. -.....+.
T Consensus 1018 fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~V 1084 (1630)
T 1xi4_A 1018 FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQV 1084 (1630)
T ss_pred ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHH
Confidence 24456666666666 556666665554421 13346677888899999999988852 11111222
Q ss_pred HHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHH
Q 044988 159 LMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQAL 238 (538)
Q Consensus 159 l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 238 (538)
+ +-..++ +++|.++.++.. +..+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|.
T Consensus 1085 L---ie~i~n---ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1085 L---IEHIGN---LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred H---HHHHhh---HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHH
Confidence 2 226677 888888888764 4677889999999999999999999764 56777888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 239 SLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 239 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
++|....+.. ++....+.++.+|++.++++....+. + .+ +...+..+...|...|++++|...|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~------~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 9998877644 34333445888888888887544332 2 12 2334456888999999999999999885
Q ss_pred CCCCcchHHHHHHHHHhcCCccHHH---------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Q 044988 319 QRRNTVSWTSMITGFAKQGYAQEAL---------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLF 389 (538)
Q Consensus 319 ~~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 389 (538)
..|..+...|.+.|++++|+ .+|..+-.+|...|++..|..+...+ ..+...+..++..|
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYY 1290 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHH
Confidence 48888999999999999988 66677777888888888888876542 23455677899999
Q ss_pred hhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHchhccCC-----CCcccHHHHHHHHHHhc
Q 044988 390 SRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRI--HNNAELASQVAQKLVAEIDP-----EQAAGYLALVANVYAAA 460 (538)
Q Consensus 390 ~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~p-----~~~~~~~~~l~~~~~~~ 460 (538)
.+.|.+++|+.+++... ..|. ...|.-+...+++ .++..++.++|..- ..+.| .+...|. -++-.|.+.
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r-ini~k~~r~~e~~~lW~-elv~LY~~~ 1368 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR-VNIPKVLRAAEQAHLWA-ELVFLYDKY 1368 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cccchHhHHHHHHHHHH-HHHHHHHhc
Confidence 99999999999997763 3333 3455555555544 34566666666654 45544 4555577 777889999
Q ss_pred CChHHHHHH
Q 044988 461 KRWQDVAAV 469 (538)
Q Consensus 461 g~~~~A~~~ 469 (538)
|+++.|...
T Consensus 1369 ~e~dnA~~t 1377 (1630)
T 1xi4_A 1369 EEYDNAIIT 1377 (1630)
T ss_pred ccHHHHHHH
Confidence 999999843
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=6.2e-15 Score=134.96 Aligned_cols=248 Identities=10% Similarity=-0.008 Sum_probs=200.8
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 044988 194 LKGYVKRGDIDGAWKIFDEMPHRNV----VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDL 269 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 269 (538)
++-....|++..|+..+++....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445668999999999988765332 3456678999999999999987754 2467788889999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHH
Q 044988 270 KLGKWIHSYVEENFSVGR-EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLG 348 (538)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 348 (538)
+.|...++.+... + .|.+..++..+...|...|++++|.+.+++ ..+...+..++..+.+.|
T Consensus 82 ~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g----------- 144 (291)
T 3mkr_A 82 DAIVAELDREMSR----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLD----------- 144 (291)
T ss_dssp HHHHHHHHHHHHS----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCC-----------
Confidence 9999999998875 4 577888888899999999999999999998 445566666666666666
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCccHHH---HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPRIEH---YGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRI 423 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 423 (538)
++++|...|+++.+. .|+... ...++..+...|++++|..+|+++. .+.+...++.+..++.+
T Consensus 145 ---------~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 145 ---------RLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp ---------CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 777888999998876 465321 1233444556699999999999984 45678899999999999
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQD-VAAVRQKMIKM 476 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 476 (538)
.|++++|...++++ ....|+++.++. .++.++...|+.++ +.++++++.+.
T Consensus 213 ~g~~~eA~~~l~~a-l~~~p~~~~~l~-~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEA-LDKDSGHPETLI-NLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999 999999999888 88899999999976 57899988863
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.2e-15 Score=146.30 Aligned_cols=381 Identities=9% Similarity=-0.056 Sum_probs=192.8
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCC-----------CC-CcchHHHHHHHHhcCCCchHHHHHHHHhHhC----C-
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTE-----------NP-STAIWNQMIRGHARSETPEKSVYLYKQMIDK----E- 113 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~- 113 (538)
....|+.|..++...|++++|++.|++.. .| ...+|+.+..+|...|++++|...+++..+- .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45678888888888888888888876532 12 3356788888888888888888888776531 1
Q ss_pred -CCC-CcchHHHHHHHHHc--cCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--C-C
Q 044988 114 -TEP-DEYTYSFLLSVCAR--CGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--R-S 186 (538)
Q Consensus 114 -~~p-~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~-~ 186 (538)
..+ ...++.....++.. .+++++|...|++.++.. +.+...+..+..++.+.++....++|...+++..+ | +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 011 22345544444443 346788888888887764 33455555555554333221115555555544332 1 2
Q ss_pred chhHHHHHHHHHh----cCCHHHHHHHHccCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 044988 187 VVSWNSLLKGYVK----RGDIDGAWKIFDEMP---HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD-QVALVA 258 (538)
Q Consensus 187 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 258 (538)
...+..+...+.. .|++++|.+.+++.. ..+..++..+...|...|++++|...|++..+. .|+ ..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 3333333333322 234455555554432 123344555555555555555555555555542 222 223333
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 044988 259 ALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAK 335 (538)
Q Consensus 259 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~ 335 (538)
+..++...+... ... ... .........+..+.|...|++..+ .+..++..+...+..
T Consensus 287 lg~~y~~~~~~~---------~~~-----~~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-----REN------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-----------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------hhH-----HHH------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 322221110000 000 000 000000111234566666665443 344556666666655
Q ss_pred cCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH--HHHHHHHH-HhhhcCChHHHHHHHHhC-CCCCCH
Q 044988 336 QGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI--EHYGCMVD-LFSRAGLMDEAFSLVQNM-PMKPND 411 (538)
Q Consensus 336 ~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~ 411 (538)
.| ++++|...|++..+. ...|.. ..+..+.. .+...|+.++|++.|++. ...|+.
T Consensus 347 ~~--------------------~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 347 AD--------------------QYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp TT--------------------CHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hc--------------------cHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 55 667777888877654 222221 12333332 234678999999998876 355664
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSW 486 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 486 (538)
...... ...+.+++++. ....|+++.++. .|+.+|...|++++|++.|++..+.|-..+...+|
T Consensus 406 ~~~~~~---------~~~l~~~~~~~-l~~~p~~~~~~~-~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 406 REKEKM---------KDKLQKIAKMR-LSKNGADSEALH-VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHH-HHHCC-CTTHHH-HHHHHHHHHHHCC----------------------
T ss_pred HHHHHH---------HHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 433222 34455667777 788999999888 99999999999999999999999876654445555
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=168.58 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC-------CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE-------NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFL 124 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 124 (538)
..+|++||++|++.|++++|.++|+.|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 699999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC-----CchhHHHHHHHHH
Q 044988 125 LSVCARCGLF-REGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPAR-----SVVSWNSLLKGYV 198 (538)
Q Consensus 125 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~ 198 (538)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+- ++.+.++...+..+ .+.+...|.+.|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v---L~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV---LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH---HHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH---HHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999985 7899999999999999999999999988877765 55555554444321 1334444555565
Q ss_pred hcC
Q 044988 199 KRG 201 (538)
Q Consensus 199 ~~g 201 (538)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.4e-15 Score=142.44 Aligned_cols=257 Identities=10% Similarity=0.006 Sum_probs=193.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSAC 263 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 263 (538)
...|..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556666777777888888887777642 355677788888888888888888888887752 33567777888888
Q ss_pred HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH--------------HH-HHHhCCCHHHHHHHHHhcCC---CCcch
Q 044988 264 AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL--------------IH-MYASCGEIEEAYGVFRKMQR---RNTVS 325 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~---~~~~~ 325 (538)
...|+++.|...++.+.+. .|.+...+..+ .. .+...|++++|...++++.+ .+...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS-----QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT-----STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh-----CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 8888888888888888875 34333333333 22 36777889999999988764 23444
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 326 WTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 175 ~~~la~~~~~~--------------------~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 175 HASLGVLYNLS--------------------NNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------------------ccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555444 47777788888887651 335788999999999999999999999987
Q ss_pred C-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC------------CcccHHHHHHHHHHhcCChHHHHHHHH
Q 044988 406 P-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE------------QAAGYLALVANVYAAAKRWQDVAAVRQ 471 (538)
Q Consensus 406 ~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 471 (538)
. . +.+...+..+...+...|++++|.+.++++ ....|+ ....+. .++.++.+.|++++|..+++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWD-FFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSCC-----CCTHHHHHHH-HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccccccccchhhcCHHHHH-HHHHHHHhcCCHHHHHHHHH
Confidence 3 2 345788999999999999999999999999 888888 566677 89999999999999999886
Q ss_pred HH
Q 044988 472 KM 473 (538)
Q Consensus 472 ~m 473 (538)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.6e-14 Score=133.70 Aligned_cols=271 Identities=9% Similarity=-0.020 Sum_probs=193.9
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHH
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIR 91 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~ 91 (538)
.+...+..+...+...++++.|..+++.+.+.... +...+..+...+...|++++|...|++.. +.+...|..+..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 35566778888888999999999999999887533 67788888889999999999999998765 345667888888
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCcchHHHH--------------HH-HHHccCCcHHHHHHHHHHHHhCCCCchhHH
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDEYTYSFL--------------LS-VCARCGLFREGEQVHGRVLASGYCSNVFIR 156 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (538)
.+...|++++|...|+++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 8999999999999999988753 2233333333 22 2566677777877777777664 3345566
Q ss_pred hHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHH
Q 044988 157 TNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQ 236 (538)
Q Consensus 157 ~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 236 (538)
..+...|...|+ +++|...+++..+ ....+..+|..+...+...|++++
T Consensus 176 ~~la~~~~~~~~---~~~A~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 176 ASLGVLYNLSNN---YDSAAANLRRAVE----------------------------LRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHH----------------------------hCCCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666 5555555443221 012345677888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCc-------chhHHHHHHHHHHhCCCHH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPV-------LVSLNNALIHMYASCGEIE 309 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~ 309 (538)
|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.......+. +...+..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 888888887643 33567788888888888899998888888877621100000 6778888999999999999
Q ss_pred HHHHHHHhcCC
Q 044988 310 EAYGVFRKMQR 320 (538)
Q Consensus 310 ~a~~~~~~m~~ 320 (538)
+|..++++..+
T Consensus 304 ~A~~~~~~~l~ 314 (327)
T 3cv0_A 304 LVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCCSH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=159.75 Aligned_cols=119 Identities=9% Similarity=0.061 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHccCC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044988 188 VSWNSLLKGYVKRGDIDGAWKIFDEMP-------HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAAL 260 (538)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 260 (538)
.+||++|++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 578888888888888888888886653 4899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-HHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHH
Q 044988 261 SACAEIGDL-KLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEE 310 (538)
Q Consensus 261 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 310 (538)
.++++.|+. +.|.++++.|.+. |..++..+|++++..+.+.+-++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k----G~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE----GLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH----TCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc----CCCCChhhcccccChhhHHHHHHH
Confidence 999998874 7788899999988 899999998888876665433333
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=7.5e-14 Score=137.96 Aligned_cols=382 Identities=11% Similarity=0.006 Sum_probs=235.8
Q ss_pred ccccHHHHHHHHhccCChHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHHHccCChhHHHHHHhcCC-------C
Q 044988 16 KALTTRQIFSLLQIRNTTKTLFQIHSQIIIN-----G--FSQ-KNYILAKLLAFYVTSGYLINAHKVFEKTE-------N 80 (538)
Q Consensus 16 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~ 80 (538)
....|+.+..++...|+.++|.+.++...+. + ..| ...+|+.+..+|...|++++|...+++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999887642 1 122 35688999999999999999999887653 1
Q ss_pred ---C-CcchHHHHHHHHhc--CCCchHHHHHHHHhHhCCCCCCc-chHHHHHHH---HHccCCcHHHHHHHHHHHHhCCC
Q 044988 81 ---P-STAIWNQMIRGHAR--SETPEKSVYLYKQMIDKETEPDE-YTYSFLLSV---CARCGLFREGEQVHGRVLASGYC 150 (538)
Q Consensus 81 ---~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~ 150 (538)
+ ...+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.+++.++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 23456655555544 45799999999999874 4654 344444444 445678889999999998875 4
Q ss_pred CchhHHhHHHHHHHhcCC-CCChhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHH
Q 044988 151 SNVFIRTNLMNLYLMSGG-ECGVGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTT 223 (538)
Q Consensus 151 ~~~~~~~~l~~~~~~~g~-~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ 223 (538)
.+..++..+...+...+. ....++|.+.+++... .+...+..+...|...|++++|...|++..+ | +..++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 566677777666665543 1127889999887653 3667888999999999999999999998753 4 4556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYA 303 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (538)
+...|...+....+... . .........+..+.|...+....+. .|.....+..+...|.
T Consensus 287 lg~~y~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRE----------N------GMYGKRKLLELIGHAVAHLKKADEA-----NDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHH-----CTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHH----------H------HHHHHHHHHhhHHHHHHHHHHHhhc-----CCchhhhhhhHHHHHH
Confidence 76666432211111000 0 0000111123456778888888776 5666677788999999
Q ss_pred hCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHH-HhcccCcHHHHHHHHHHhhhhcCCCccHH
Q 044988 304 SCGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLS-ACSHGGFVDEGRQFFECMNQNWGIKPRIE 380 (538)
Q Consensus 304 ~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 380 (538)
..|++++|...|++..+ ++......+ +..+.. .....|+.++|...|++..+. .|+..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~ 406 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLL----------------HLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSR 406 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHH----------------HHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHH----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccH
Confidence 99999999999998754 222111111 111111 123456888888888887754 55543
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNM-P-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
.....+ ..+.++++.. . .+.+..+|..+...+...|++++|++.|+++ .++.|..+.+..
T Consensus 407 ~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA-Le~~~~~p~a~~ 468 (472)
T 4g1t_A 407 EKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG-LESGSLIPSASS 468 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCCCcHhh
Confidence 222222 2223333332 1 2345678889999999999999999999999 888888777544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.2e-14 Score=126.20 Aligned_cols=227 Identities=12% Similarity=0.005 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC--CCcchhHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR--EPVLVSLN 295 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ 295 (538)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+...... .+....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467788888899999999999999988876 7788888888899999999999999988887621100 00115777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
..+...|...|++++|...|+++.+-+.. . ..+...|++++|...++.+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~--------------------~~~~~~~~~~~a~~~~~~~~~~--- 134 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----A--------------------DILTKLRNAEKELKKAEAEAYV--- 134 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----H--------------------HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----h--------------------HHHHHHhHHHHHHHHHHHHHHc---
Confidence 88999999999999999999887652111 1 1223345788888999988764
Q ss_pred Cc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH
Q 044988 376 KP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL 452 (538)
Q Consensus 376 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~ 452 (538)
.| +...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++ ....|+++..+. .
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~-~ 212 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA-IEKDPNFVRAYI-R 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-H
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCHHHHHHHH-H
Confidence 45 47788999999999999999999999874 3445788999999999999999999999999 889999998888 9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 044988 453 VANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 453 l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++.+|.+.|++++|.+.+++..+.
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998753
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=6.5e-14 Score=122.40 Aligned_cols=206 Identities=12% Similarity=0.011 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA 297 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (538)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++.+.+. .|.+...+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~ 78 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYLGGYMV 78 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHH
Confidence 3445555555555555555555555555421 123444444444555555555555555555554 3444444444
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP 377 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 377 (538)
+..++...+. . ... .....|++++|...|++..+. .|
T Consensus 79 lg~~~~~~~~---------~--~~~-----------------------------~~~~~g~~~~A~~~~~~al~~---~P 115 (217)
T 2pl2_A 79 LSEAYVALYR---------Q--AED-----------------------------RERGKGYLEQALSVLKDAERV---NP 115 (217)
T ss_dssp HHHHHHHHHH---------T--CSS-----------------------------HHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHhhh---------h--hhh-----------------------------hcccccCHHHHHHHHHHHHHh---Cc
Confidence 4444332210 0 000 001125888999999998875 56
Q ss_pred -cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH
Q 044988 378 -RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 378 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
+...+..+..+|...|++++|+..|++.. ...+...+..+..++...|++++|+..++++ ....|+++..+. .++.
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~P~~~~~~~-~la~ 193 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKA-LEQAPKDLDLRV-RYAS 193 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHH-HHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHH-HHHH
Confidence 47889999999999999999999999873 1277889999999999999999999999999 999999999888 9999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044988 456 VYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~ 474 (538)
++.+.|++++|++.+++..
T Consensus 194 ~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTC---------------
T ss_pred HHHHccCHHHHHHHHHHHh
Confidence 9999999999999988754
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=6.4e-13 Score=120.69 Aligned_cols=241 Identities=8% Similarity=-0.040 Sum_probs=183.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--QVALVAALSAC 263 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~ 263 (538)
.+......+...|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445566677788888888888887643 3455888889999999999999999999988432222 34478888899
Q ss_pred HccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCcc
Q 044988 264 AEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQ 340 (538)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 340 (538)
...|+++.|...++.+.+. .|.+..++..+...|...|++++|...|++..+. +...|..+...+...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---- 155 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR-----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---- 155 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT----
T ss_pred HHcccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH----
Confidence 9999999999999999987 6677788899999999999999999999998873 333444444122222
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCC---hHHHHHHHHhCC----CCCC--
Q 044988 341 EALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGL---MDEAFSLVQNMP----MKPN-- 410 (538)
Q Consensus 341 ~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~-- 410 (538)
+++++|...|+++.+. .|+ ...+..+..++...|+ +++|...+++.. ..|+
T Consensus 156 ----------------~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 156 ----------------KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp ----------------TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred ----------------HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 2788888999998876 454 6778888888888887 777777777653 2244
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh
Q 044988 411 ----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA 459 (538)
Q Consensus 411 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 459 (538)
...|..+...+...|++++|.+.++++ ..+.|+++.+.. .+......
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~a~~-~l~~~~~~ 267 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNI-LALDPTNKKAID-GLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHC-----
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCccHHHHHH-Hhhhhhcc
Confidence 257777888899999999999999999 999999988666 65544433
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.5e-13 Score=123.60 Aligned_cols=238 Identities=6% Similarity=-0.154 Sum_probs=181.5
Q ss_pred hcCCHHHHHHHHccCCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 044988 199 KRGDIDGAWKIFDEMPHR-------NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKL 271 (538)
Q Consensus 199 ~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 271 (538)
..|++++|+..|+++.+. +..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888776541 34578888999999999999999999998753 3367888899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHH
Q 044988 272 GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGV 349 (538)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~l 349 (538)
|...++.+.+. .|.+..++..+...|...|++++|...|+++.+ |+.......+..+
T Consensus 96 A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------------- 154 (275)
T 1xnf_A 96 AYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA---------------- 154 (275)
T ss_dssp HHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhc-----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH----------------
Confidence 99999999987 666778888999999999999999999998865 3332222222222
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-----DAVLGSLLLGCRI 423 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~ 423 (538)
...|++++|...++...... +++...+. ++..+...++.++|.+.+++.. ..|+ ...+..+...+..
T Consensus 155 ----~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 155 ----EQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHhcCHHHHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 22358888889998777652 33444444 7777888888999999998875 2232 5778888899999
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHH
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVR 470 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 470 (538)
.|++++|...++++ ....|++.. ....++...|++++|++.+
T Consensus 228 ~g~~~~A~~~~~~a-l~~~p~~~~----~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 228 LGDLDSATALFKLA-VANNVHNFV----EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHHHHHHHHHHH-HTTCCTTCH----HHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHH-HhCCchhHH----HHHHHHHHHHHHHhhHHHH
Confidence 99999999999999 888898755 4456788889999998876
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=2.7e-13 Score=118.50 Aligned_cols=207 Identities=11% Similarity=-0.015 Sum_probs=140.6
Q ss_pred CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHH
Q 044988 81 PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLM 160 (538)
Q Consensus 81 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 160 (538)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667777777778888888888888777643 3355677777777778888888888888777764 44455666666
Q ss_pred HHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCCHHHH
Q 044988 161 NLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGKSRQA 237 (538)
Q Consensus 161 ~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a 237 (538)
.++...+. .. .+ .....|++++|+..|++..+ | +...|..+...+...|++++|
T Consensus 81 ~~~~~~~~---~~-----------~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 81 EAYVALYR---QA-----------ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHH---TC-----------SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhh---hh-----------hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 66655511 00 00 01122667777777766542 3 456788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044988 238 LSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 238 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (538)
+..|++..+.. .+...+..+..++...|++++|...++.+.+. .|.+...+..+...+...|++++|...|++
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999998876 77888888999999999999999999999887 777888888899999999999999998887
Q ss_pred cC
Q 044988 318 MQ 319 (538)
Q Consensus 318 m~ 319 (538)
..
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8e-13 Score=118.87 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=136.0
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC--Cc----hhHHhH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYC--SN----VFIRTN 158 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 158 (538)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45566666677777777777777776654 56666777777777777777777777766654211 11 355666
Q ss_pred HHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHH
Q 044988 159 LMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSR 235 (538)
Q Consensus 159 l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 235 (538)
+...+...|+ +++|...|++..+.+.. ...+.+.|++++|...+++... .+...|..+...+...|+++
T Consensus 85 l~~~~~~~~~---~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGD---LKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccc---HHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 6666666666 66666666554431111 1234445556666666665432 23345666666777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 044988 236 QALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVF 315 (538)
Q Consensus 236 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (538)
+|...|++..+.. +.+...+..+...+...|+++.|...++.+.+. .|.+...+..+...|...|++++|...|
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777766542 224566666666677777777777777777665 4555666666777777777777777766
Q ss_pred HhcC
Q 044988 316 RKMQ 319 (538)
Q Consensus 316 ~~m~ 319 (538)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=8.5e-12 Score=121.83 Aligned_cols=218 Identities=12% Similarity=0.032 Sum_probs=109.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCCh---hHHHHHHhcCCCCCcchHHHHHHHHhcCC-
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYL---INAHKVFEKTENPSTAIWNQMIRGHARSE- 97 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~- 97 (538)
.+...+.+.|+++.|...++...+.| ++..+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35566667788888888888887776 333444555666666766 78888887776556666777766555544
Q ss_pred ----CchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHH---HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCC
Q 044988 98 ----TPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFRE---GEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGEC 170 (538)
Q Consensus 98 ----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 170 (538)
++++|+..|++..+.| +...+..|...|...+..+. +.+.+......| +......|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~-- 156 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT-- 156 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC--
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC--
Confidence 5677888888777754 22356666666655544332 333333333333 23344445555555554
Q ss_pred ChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 044988 171 GVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNG---KSRQALSLFNEMRRA 247 (538)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~ 247 (538)
++. ..+.+..+++.....++..+..+...|...| +.++|+..|++..+.
T Consensus 157 -~~~---------------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 157 -YDQ---------------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp -GGG---------------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred -ccc---------------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 322 2333444555555555557777777777777 777888888777776
Q ss_pred CCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHH
Q 044988 248 RVGLDQVALVAALSACAEI----GDLKLGKWIHSYV 279 (538)
Q Consensus 248 g~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~ 279 (538)
| .++...+..+...|... +++++|...|+..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 5 33333333444444332 4555555555444
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.4e-12 Score=116.90 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=73.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcc----hHHHHHH
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEY----TYSFLLS 126 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~ 126 (538)
.+......+...|++++|+..|++.. +.+...|..+...+.+.|++++|+..|++..+.+ ++.. +|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 34445556666666666666666543 2234466666666666666777776666666532 2222 2566666
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC
Q 044988 127 VCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA 184 (538)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~ 184 (538)
.+...|++++|...+++..+.. +.+..++..+..+|...|+ +++|...|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC---HHHHHHHHHHHhh
Confidence 6666666666666666666653 3344555556666666665 5555555555443
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=3.6e-12 Score=123.00 Aligned_cols=304 Identities=11% Similarity=-0.025 Sum_probs=180.6
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc----hhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHH
Q 044988 120 TYSFLLSVCARCGLFREGEQVHGRVLASGYCSN----VFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLK 195 (538)
Q Consensus 120 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~ 195 (538)
.+......+...|++++|...+++..+.+ +.+ ..++..+...|...|+ +++|...+++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~-------------- 72 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHD---YAKALEYHHH-------------- 72 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHH--------------
Confidence 44455555666666777776666666653 222 2345555566666666 6665554432
Q ss_pred HHHhcCCHHHHHHHHccCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC
Q 044988 196 GYVKRGDIDGAWKIFDEMPHR--NVVSWTTMISGCAQNGKSRQALSLFNEMRRARV-GLD----QVALVAALSACAEIGD 268 (538)
Q Consensus 196 ~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~ 268 (538)
|..+......+ ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 73 ----------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 73 ----------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 22222222211 123455566666666677666666666554200 011 3355566666666677
Q ss_pred --------------------hHHHHHHHHHHHHhccCCC-CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHH
Q 044988 269 --------------------LKLGKWIHSYVEENFSVGR-EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWT 327 (538)
Q Consensus 269 --------------------~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 327 (538)
++.|...+....+.....+ .+....++..+...|...|++++|...+++..+
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------- 215 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL------- 215 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH-------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------
Confidence 7777776666554322111 233345677888889999999999998887643
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-cHHHHHHHHHHhhhcCChHHHHHHHH
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW---GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQ 403 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (538)
.....+........+..+...+...|++++|...+++..+.. +..+ ...++..+...|...|++++|.+.++
T Consensus 216 ----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 216 ----IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 111112111112344445555555566777777776655431 1111 15678889999999999999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccC------CCCcccHHHHHHHHHHhcCChH
Q 044988 404 NMP----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEID------PEQAAGYLALVANVYAAAKRWQ 464 (538)
Q Consensus 404 ~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~~ 464 (538)
+.. ..++ ..++..+...+...|++++|...+++.. .+. +....++. .++.++...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISREVGDKSGELTARL-NLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH-HHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCCcchhHHHH-HHHHHHHHhhHhH
Confidence 763 1122 5577788888999999999999999984 332 22233455 6777777777653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=2.1e-11 Score=110.75 Aligned_cols=228 Identities=10% Similarity=-0.020 Sum_probs=159.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhccCCCCCcch
Q 044988 217 NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE----IGDLKLGKWIHSYVEENFSVGREPVLV 292 (538)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (538)
+..++..+...|...|++++|...|++..+. -+...+..+...+.. .+++++|...++...+. + +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C---CH
Confidence 4456666777777777888888888777762 244566666667777 77788888777777765 3 45
Q ss_pred hHHHHHHHHHHh----CCCHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 044988 293 SLNNALIHMYAS----CGEIEEAYGVFRKMQRR-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFE 367 (538)
Q Consensus 293 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~ 367 (538)
..+..+...|.. .+++++|...|++..+. +...+..+...|.... ...+++++|...|+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~----------------~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK----------------VVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCS----------------SSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCC----------------CcccCHHHHHHHHH
Confidence 556677777777 78888888888776542 3344444444444300 01447777777777
Q ss_pred HhhhhcCCCccHHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchh
Q 044988 368 CMNQNWGIKPRIEHYGCMVDLFSR----AGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRI----HNNAELASQVAQKLVA 439 (538)
Q Consensus 368 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 439 (538)
+..+. + +...+..+...|.. .+++++|.+.|++.....+...+..+...+.. .+++++|+..+++. .
T Consensus 139 ~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~ 213 (273)
T 1ouv_A 139 KACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA-C 213 (273)
T ss_dssp HHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH-H
T ss_pred HHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH-H
Confidence 77764 3 45566777777777 88888888888876433466777778888888 88999999999888 6
Q ss_pred ccCCCCcccHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044988 440 EIDPEQAAGYLALVANVYAA----AKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 440 ~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 478 (538)
+..| +..+. .++.+|.+ .+++++|.+.+++..+.|.
T Consensus 214 ~~~~--~~a~~-~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 214 ELEN--GGGCF-NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTC--HHHHH-HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hCCC--HHHHH-HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 6554 44466 78888888 8889999999888876543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=3.5e-12 Score=120.69 Aligned_cols=247 Identities=9% Similarity=0.044 Sum_probs=199.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGK-SRQALSLFNEMRRARVGLDQVALVAALSA 262 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 262 (538)
...|..+...+.+.|++++|+..|++... | +..+|+.+...+...|+ +++|+..|+++.+.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35677778888888999999999988653 3 56688999999999996 999999999998843 2257788888888
Q ss_pred HHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHh-cCC
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAK-QGY 338 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~-~~~ 338 (538)
+...|++++|...++.+.+. .|.+...|..+..++...|++++|...|+++.+ .+...|+.+..++.. .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~l-----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHh-----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999997 788899999999999999999999999998875 466788888888888 555
Q ss_pred ccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcC--ChHHHHHHHHhCCCCCC-HHHH
Q 044988 339 AQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAG--LMDEAFSLVQNMPMKPN-DAVL 414 (538)
Q Consensus 339 ~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~ 414 (538)
.++|+ .+.+...|++..+. .| +...|+.+..++...| ++++|++.++++...|+ ...+
T Consensus 251 ~~eA~---------------~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al 312 (382)
T 2h6f_A 251 NDRAV---------------LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLI 312 (382)
T ss_dssp CSHHH---------------HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred chHHH---------------HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHH
Confidence 46552 44556778887765 56 5778999999999988 68999999988854454 6778
Q ss_pred HHHHHHHHhcC---------CHHHHHHHHHHchhccCCCCcccHHHHHHHHHH
Q 044988 415 GSLLLGCRIHN---------NAELASQVAQKLVAEIDPEQAAGYLALVANVYA 458 (538)
Q Consensus 415 ~~l~~~~~~~~---------~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 458 (538)
..+...+.+.| ..++|+++++++..++.|.....|. .++..+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~-~~~~~l~ 364 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWR-YIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHH-HHHHHHH
Confidence 88888888764 3589999999974578899888676 6655544
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.3e-11 Score=110.55 Aligned_cols=204 Identities=13% Similarity=-0.005 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA 297 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (538)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHH
Confidence 4567778888888899999999998887753 335677888888888889999999998888886 5666777788
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI 375 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (538)
+...|...|++++|.+.|+++.+ .++.. ...+..+...+...|++++|...++++.+..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 171 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPER-----------------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-- 171 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCccc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 88889999999999999988765 21110 0122233334444457777777777776551
Q ss_pred CccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 376 KPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+.+...+..+...|...|++++|...++++. ...+...+..+...+...|++++|.+.++++ ....|+++.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~p~~~~ 244 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL-KRLYPGSLE 244 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTSHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHCCCCHH
Confidence 2246677788888888888888888887763 2344666777777778888888888888888 777777766
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=7.1e-12 Score=112.28 Aligned_cols=197 Identities=14% Similarity=-0.000 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHH
Q 044988 253 QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSM 329 (538)
Q Consensus 253 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~l 329 (538)
...+..+...+...|+++.|...++.+.+. .|.+...+..+...|...|++++|.+.|+++.+ .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 455677778889999999999999999987 567788888999999999999999999998764 234444444
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 044988 330 ITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-- 406 (538)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 406 (538)
...+. ..|++++|..+++++.+. +..| +...+..+...|...|++++|.+.++++.
T Consensus 112 a~~~~--------------------~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 112 GGFLY--------------------EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHH--------------------HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44444 445788888999988762 3456 57788999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 407 MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
.+.+...+..+...+...|++++|...++++ ....|++...+. .++.++.+.|++++|.++++++.+..
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLF-AQGGGQNARSLL-LGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTSCCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHH-HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 2345788889999999999999999999999 889999988777 89999999999999999999998743
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.4e-12 Score=116.18 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=128.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 217 NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcchHHHH
Confidence 34456667777777788888888888777632 335666777777777788888888888877776 455666777
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+...|...|++++|.+.++++.+ .+...+..+...+.. .|++++|...++++.+..
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK--------------------LEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--------------------TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHhC
Confidence 777888888888888888776643 233333333333433 346666667777766541
Q ss_pred CCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 374 GIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
+.+...+..+...+.+.|++++|.+.++++. ...+..++..+...+...|++++|...++++ ....|++...+.
T Consensus 156 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~ 231 (243)
T 2q7f_A 156 --ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA-IDIQPDHMLALH 231 (243)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH-HHHCTTCHHHHH
T ss_pred --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH-HccCcchHHHHH
Confidence 2356677778888888888888888887763 2334667777788888888888888888888 778888776554
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.2e-11 Score=106.79 Aligned_cols=201 Identities=11% Similarity=-0.002 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 217 NVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHH
Confidence 34567777788888888888888888877643 334667777777888888888888888888776 556666777
Q ss_pred HHHHHHHhC-CCHHHHHHHHHhcCC--CC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 297 ALIHMYASC-GEIEEAYGVFRKMQR--RN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 297 ~l~~~~~~~-g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
.+...|... |++++|...++++.+ .+ ...+..+ ..++...|++++|...++++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK--------------------GICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHH
Confidence 788888888 888888888877655 11 1223333 333334446666667777666
Q ss_pred hhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCc
Q 044988 371 QNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-K-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQA 446 (538)
Q Consensus 371 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~ 446 (538)
+. .| +...+..+...+...|++++|.+.++++. . + .+...+..+...+...|+.+.|..+++.+ ....|+++
T Consensus 141 ~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~p~~~ 216 (225)
T 2vq2_A 141 AA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL-QANFPYSE 216 (225)
T ss_dssp HH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCH
T ss_pred Hh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhCCCCH
Confidence 54 33 36667777777777777777777777653 2 2 34556666666677777777777777777 66677766
Q ss_pred c
Q 044988 447 A 447 (538)
Q Consensus 447 ~ 447 (538)
.
T Consensus 217 ~ 217 (225)
T 2vq2_A 217 E 217 (225)
T ss_dssp H
T ss_pred H
Confidence 6
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=3.5e-10 Score=114.32 Aligned_cols=424 Identities=9% Similarity=0.047 Sum_probs=252.3
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCC---chHHHHHHHHh
Q 044988 36 LFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSET---PEKSVYLYKQM 109 (538)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m 109 (538)
....++..+... +-|...|..++..+.+.+.++.+..+|+++. +.+...|...+..-.+.++ ++.+..+|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344456655554 3488899999999988899999999998876 3455678888888888888 99999999998
Q ss_pred HhCC-CCCCcchHHHHHHHHHccCCc--------HHHHHHHHHHHHh-CC-CCc-hhHHhHHHHHHHh---------cCC
Q 044988 110 IDKE-TEPDEYTYSFLLSVCARCGLF--------REGEQVHGRVLAS-GY-CSN-VFIRTNLMNLYLM---------SGG 168 (538)
Q Consensus 110 ~~~~-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~ 168 (538)
.... ..|+...|...+....+.++. +...++|+..+.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8753 137888888877766655543 3344677776653 55 444 4677777765543 234
Q ss_pred CCChhHHHHHhhcCCCCCc----hhHH---HHHHHH----------HhcCCHHHHHHHHcc-------CCC---------
Q 044988 169 ECGVGCARLLFDDMPARSV----VSWN---SLLKGY----------VKRGDIDGAWKIFDE-------MPH--------- 215 (538)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~----~~~~---~li~~~----------~~~g~~~~A~~~~~~-------m~~--------- 215 (538)
++.+.++|++...-.. ..|. .+.... -...+++.|...+.+ +..
T Consensus 210 ---~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 210 ---VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp ---HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred ---HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 6778888888775211 2222 221111 011223444454433 111
Q ss_pred -----C--C------hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH-H
Q 044988 216 -----R--N------VVSWTTMISGCAQNG-------KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGK-W 274 (538)
Q Consensus 216 -----~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~ 274 (538)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|...+.-+...|+.+.|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 134555555433332 134566788888764 3446777777777778889999996 9
Q ss_pred HHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCcc--------HHHHHH
Q 044988 275 IHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQ--------EALLTF 346 (538)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~--------~a~~~~ 346 (538)
+++..... .|.+...|-.++....+.|+++.|.++|+++...-...+..+-. .....+ ....+|
T Consensus 366 il~rAi~~-----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~---~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 366 YLKLGQQC-----IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME---DDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh---ccCcchhhhhhhccchHHHH
Confidence 99999886 67788888889999999999999999999875310000000000 000000 000234
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhh-cCCCccHHHHHHHHHHhhhc-CChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQN-WGIKPRIEHYGCMVDLFSRA-GLMDEAFSLVQNMP--MKPNDAVLGSLLLGCR 422 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 422 (538)
...+....+.|.++.|+.+|....+. ... ....|...+..-.+. ++.+.|.++|+... ..-+...|...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLV--TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 44444444555667777777776653 111 122232222222233 34677777776553 2224455556666666
Q ss_pred hcCCHHHHHHHHHHchhccCCC---CcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 423 IHNNAELASQVAQKLVAEIDPE---QAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
..|+.+.|..+|+++ ....|+ ....|. ..+..-.+.|+.+.+.++.+++.+.
T Consensus 516 ~~~~~~~AR~lfera-l~~~~~~~~~~~lw~-~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 516 YVNEESQVKSLFESS-IDKISDSHLLKMIFQ-KVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHTCHHHHHHHHHHH-TTTSSSTTHHHHHHH-HHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH-HHhcCCHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777776 444442 223344 4445555667777777777777654
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.4e-12 Score=126.30 Aligned_cols=271 Identities=9% Similarity=-0.043 Sum_probs=185.9
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC--CC-h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPH--RN-V----VSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGL-DQVALVAA 259 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~--~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 259 (538)
.+...+...|++++|+..|++..+ |+ . ..|..+...|...|++++|...|++..+. +-.| ....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344556666777777777766542 32 2 36777788888888888888888877652 1122 34566677
Q ss_pred HHHHHccCChHHHHHHHHHHHHhccC-CCCCcchhHHHHHHHHHHhCCC-----------------HHHHHHHHHhcCCC
Q 044988 260 LSACAEIGDLKLGKWIHSYVEENFSV-GREPVLVSLNNALIHMYASCGE-----------------IEEAYGVFRKMQRR 321 (538)
Q Consensus 260 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~~ 321 (538)
...+...|+++.|...+..+.+.... +..+....++..+...|...|+ +++|...+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~- 211 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK- 211 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-
Confidence 77788888998888888877665221 1134445677788999999999 8888888876532
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----HHHHHHHHHHhhhcCChHH
Q 044988 322 NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR----IEHYGCMVDLFSRAGLMDE 397 (538)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 397 (538)
.....++.......+..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++
T Consensus 212 ----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 212 ----------LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp ----------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----------HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 11111222222234555555666666777777777776543110111 3478889999999999999
Q ss_pred HHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC------cccHHHHHHHHHHhcCCh
Q 044988 398 AFSLVQNMP----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ------AAGYLALVANVYAAAKRW 463 (538)
Q Consensus 398 A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~ 463 (538)
|.+.+++.. ...+ ..++..+...+...|++++|...++++ ....+.. ...+. .++.+|.+.|++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~-~la~~~~~~g~~ 359 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARACW-SLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHCCChHHHHHHHH-HHHHHHHHhccH
Confidence 999998763 1112 467788888899999999999999999 4443322 33566 889999999999
Q ss_pred HHHHHHHHHHHh
Q 044988 464 QDVAAVRQKMIK 475 (538)
Q Consensus 464 ~~A~~~~~~m~~ 475 (538)
++|.+.+++..+
T Consensus 360 ~~A~~~~~~al~ 371 (411)
T 4a1s_A 360 ERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.2e-11 Score=108.61 Aligned_cols=197 Identities=11% Similarity=-0.079 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHH
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTS 328 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~ 328 (538)
+...+..+...+...|+++.|...++.+.+. .|.+...+..+...|...|++++|...++++.+ | +...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 4566778888899999999999999999987 567778888999999999999999999998764 2 3334444
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccc-CcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 329 MITGFAKQGYAQEALLTFLGVLSACSHG-GFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
+. ..+... |++++|...++.+.+. +..| +...+..+..++...|++++|.+.++++.
T Consensus 82 l~--------------------~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 82 YG--------------------WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HH--------------------HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--------------------HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 444555 5888888999988862 3345 36788999999999999999999998874
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCC-CCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 407 -MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDP-EQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 407 -~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
..| +...+..+...+...|++++|...++++ ....| ++...+. .++..+...|+.++|..+++.+.+.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKY-QSRVEVLQADDLL-LGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHCSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 234 4788889999999999999999999999 88888 8888676 8888999999999999999998754
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=6.3e-13 Score=120.86 Aligned_cols=241 Identities=11% Similarity=-0.055 Sum_probs=142.1
Q ss_pred cCCCchHHHHHHHHhHhCCCC--C-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCC
Q 044988 95 RSETPEKSVYLYKQMIDKETE--P-DEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECG 171 (538)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 171 (538)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...+++..+.. +.+..++..+..+|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--- 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN--- 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC---
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC---
Confidence 345566666666666654211 1 23455566666666666666666666666653 3445566666666666666
Q ss_pred hhHHHHHhhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044988 172 VGCARLLFDDMPA---RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGCAQNGKSRQALSLFNEMRR 246 (538)
Q Consensus 172 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 246 (538)
+++|...|++..+ .+...|..+...+...|++++|...|+++.+ |+.......+..+...|++++|...+++...
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6666666665543 2455666666666777777777777766542 4444444444445566788888888876665
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchH
Q 044988 247 ARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSW 326 (538)
Q Consensus 247 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 326 (538)
.. +++...+ .++..+...++.+.|...+....+.... ..+.+...+..+...|...|++++|...|++..+.++..+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS-LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc-ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 42 2232233 3555666667777777776665443000 0112246667788888888888888888888776444444
Q ss_pred HHHHHHHHhcCCccHH
Q 044988 327 TSMITGFAKQGYAQEA 342 (538)
Q Consensus 327 ~~li~~~~~~~~~~~a 342 (538)
.....++...|++++|
T Consensus 250 ~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 250 VEHRYALLELSLLGQD 265 (275)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444455555544443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=9.4e-12 Score=120.06 Aligned_cols=277 Identities=12% Similarity=-0.017 Sum_probs=199.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCC--CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 044988 186 SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RN-----VVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGLD-Q 253 (538)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~ 253 (538)
....+......+...|++++|...|++..+ |+ ..+|..+...|...|++++|...+++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344566777888999999999999988653 32 246788888999999999999999987642 22232 4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC-CCcchhHHHHHHHHHHhCCC--------------------HHHHH
Q 044988 254 VALVAALSACAEIGDLKLGKWIHSYVEENFSVGR-EPVLVSLNNALIHMYASCGE--------------------IEEAY 312 (538)
Q Consensus 254 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--------------------~~~a~ 312 (538)
..+..+...+...|+++.|...+....+.....+ .+....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4677788888899999999999999988632111 11224477788888999999 88888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----HHHHHHHHHH
Q 044988 313 GVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR----IEHYGCMVDL 388 (538)
Q Consensus 313 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 388 (538)
..+++..+ .+...++......++..+...+...|++++|...+++..+...-.++ ..++..+...
T Consensus 168 ~~~~~al~-----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 168 DFYEENLS-----------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88776532 11222222222245555566666667777887877776643211122 3478889999
Q ss_pred hhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC------cccHHHHHH
Q 044988 389 FSRAGLMDEAFSLVQNMP----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ------AAGYLALVA 454 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~~l~ 454 (538)
|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++ ....+.. ...+. .++
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~-~la 314 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELNDRIGEGRACW-SLG 314 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHH-HHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHhcCCcHHHHHHHH-HHH
Confidence 999999999999998763 1122 457788888899999999999999999 4443332 34466 889
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 044988 455 NVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+|.+.|++++|.+.+++..+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.6e-12 Score=114.41 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHH
Q 044988 251 LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWT 327 (538)
Q Consensus 251 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~ 327 (538)
.....+..+...+...|+++.|...++.+.+. .|.+...+..+...|...|++++|...|+++.+ .+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-----NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHH
Confidence 34556777778888999999999999999886 677788888999999999999999999998764 2344444
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP- 406 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 406 (538)
.+...+.. .|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 96 ~la~~~~~--------------------~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 96 GAGNVYVV--------------------KEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHH--------------------TTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444 457888888888888752 3367789999999999999999999999874
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 407 -MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 407 -~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.+.+...+..+...+...|++++|...++++ ....|++...+. .++.+|.+.|++++|.+.++++.+.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAV-TEQDPGHADAFY-NAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHH-HHHHHHHHccCHHHHHHHHHHHHcc
Confidence 3346788889999999999999999999999 888999988788 9999999999999999999999874
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=7.3e-12 Score=117.28 Aligned_cols=272 Identities=12% Similarity=0.006 Sum_probs=185.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC--CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPH--RN-----VVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGL-DQVALVAA 259 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 259 (538)
.....+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+. +-.| ....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344556667777777777776542 22 246777888888889999888888876542 2122 24566777
Q ss_pred HHHHHccCChHHHHHHHHHHHHhccCCC-CCcchhHHHHHHHHHHhCCC--------------------HHHHHHHHHhc
Q 044988 260 LSACAEIGDLKLGKWIHSYVEENFSVGR-EPVLVSLNNALIHMYASCGE--------------------IEEAYGVFRKM 318 (538)
Q Consensus 260 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~m 318 (538)
...+...|+++.|...+....+.....+ .+....++..+...|...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7788888999999888888776532111 12224467788888889999 88888888765
Q ss_pred CCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-cHHHHHHHHHHhhhcCC
Q 044988 319 QRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW---GIKP-RIEHYGCMVDLFSRAGL 394 (538)
Q Consensus 319 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~ 394 (538)
.. .+...++.......+..+...+...|++++|...+++..+.. +..+ ...++..+...|...|+
T Consensus 170 ~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 170 LS-----------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HH-----------HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HH-----------HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 32 111112222222344555555666667777777777665431 1111 14478889999999999
Q ss_pred hHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC------cccHHHHHHHHHHhc
Q 044988 395 MDEAFSLVQNMP----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ------AAGYLALVANVYAAA 460 (538)
Q Consensus 395 ~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~ 460 (538)
+++|.+.+++.. ..++ ..++..+...+...|++++|...++++ ....|.. ...+. .++.+|.+.
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~-~la~~~~~~ 316 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACW-SLGNAYTAL 316 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHH-HHHHHHHHc
Confidence 999999998763 1122 457778888899999999999999998 4433322 23466 889999999
Q ss_pred CChHHHHHHHHHHHhC
Q 044988 461 KRWQDVAAVRQKMIKM 476 (538)
Q Consensus 461 g~~~~A~~~~~~m~~~ 476 (538)
|++++|...+++..+.
T Consensus 317 g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998763
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=6.5e-12 Score=118.84 Aligned_cols=125 Identities=6% Similarity=-0.040 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCC-chHHHHHHHHhHhCCCCCCcchHHHHHHHHH
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSET-PEKSVYLYKQMIDKETEPDEYTYSFLLSVCA 129 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 129 (538)
+|..+..++.+.|++++|+..|++.. +.+...|+.+..++...|+ +++|+..|++..+.. +-+...|..+..++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555554433 1233344445555555553 555555555554432 123334444555555
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 130 RCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
..|++++|...++++++.. +.+...|..+..++.+.|+ +++|+..|+++.
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al 227 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL---WDNELQYVDQLL 227 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Confidence 5555555555555555443 3334444444444444444 444444444433
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2.1e-11 Score=117.92 Aligned_cols=280 Identities=12% Similarity=0.019 Sum_probs=147.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-----chHHHHHHHHHccCCcHHHHHHHHHHHHhC-----CCCchhH
Q 044988 86 WNQMIRGHARSETPEKSVYLYKQMIDKETEPDE-----YTYSFLLSVCARCGLFREGEQVHGRVLASG-----YCSNVFI 155 (538)
Q Consensus 86 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 155 (538)
+..+...+...|++++|+..|++..+. .|+. ..|..+...+...|++++|...+++..+.. .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 444566677788888888888888775 3432 356777777888888888888877776531 0122345
Q ss_pred HhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChHHHHHHHHHHHHcCC
Q 044988 156 RTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH--RNVVSWTTMISGCAQNGK 233 (538)
Q Consensus 156 ~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~~~ 233 (538)
+..+...|...|+ +++|...+++. ++++..... ....++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~---~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 129 SGNLGNTLKVMGR---FDEAAICCERH------------------------LTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHH------------------------HHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHH------------------------HHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 5556666666666 66665554322 222222111 123366777777777788
Q ss_pred -----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC-CCc
Q 044988 234 -----------------SRQALSLFNEMRRA----RVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR-EPV 290 (538)
Q Consensus 234 -----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 290 (538)
+++|+..+++..+. +-.| ...++..+...+...|+++.|...++...+.....+ ...
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777777665431 1111 122444444555555555555555555544311000 001
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 291 LVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
....+..+...|...|++++|...|++..+ +....
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~~~~- 296 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLA--------------------------------------------LAVEL- 296 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--------------------------------------------HHHHT-
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--------------------------------------------HHHHc-
Confidence 111334445555555555555555544321 11110
Q ss_pred hhcCCC-ccHHHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhcc
Q 044988 371 QNWGIK-PRIEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEI 441 (538)
Q Consensus 371 ~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 441 (538)
+.. ....++..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...++++ ..+
T Consensus 297 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~ 372 (411)
T 4a1s_A 297 ---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH-LQL 372 (411)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH
Confidence 111 123455556666666666666666665542 0011 235555666667777777777777776 444
Q ss_pred CC
Q 044988 442 DP 443 (538)
Q Consensus 442 ~p 443 (538)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 33
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=5.1e-11 Score=108.15 Aligned_cols=218 Identities=11% Similarity=-0.063 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHccCChhHHHHHHhcCCCC-CcchHHHHHHHHhc----CCCchHHHHHHHHhHhCCCCCCcchHHHHHHH
Q 044988 53 YILAKLLAFYVTSGYLINAHKVFEKTENP-STAIWNQMIRGHAR----SETPEKSVYLYKQMIDKETEPDEYTYSFLLSV 127 (538)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 127 (538)
.++..+...|...|++++|...|++..+| +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 34444444455555555555555443322 23344444444555 555555555555555433 34444555555
Q ss_pred HHc----cCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCCCChhHHHHHhhcCCCC-CchhHHHHHHHHH
Q 044988 128 CAR----CGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLM----SGGECGVGCARLLFDDMPAR-SVVSWNSLLKGYV 198 (538)
Q Consensus 128 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~ 198 (538)
+.. .+++++|...+++..+.+ +...+..+...|.. .++ .++|...|++..+. +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555 555555555555555443 34444445555554 444 55555444443321 2333333444444
Q ss_pred h----cCCHHHHHHHHccCCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 044988 199 K----RGDIDGAWKIFDEMPH-RNVVSWTTMISGCAQ----NGKSRQALSLFNEMRRARVGLDQVALVAALSACAE---- 265 (538)
Q Consensus 199 ~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 265 (538)
. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+. ...+..+...+.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCc
Confidence 4 4555555555544322 234455556666666 6666666666666665432 4445555555555
Q ss_pred cCChHHHHHHHHHHHHh
Q 044988 266 IGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~ 282 (538)
.+++++|...++...+.
T Consensus 235 ~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCSTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 66666666666666555
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=3.3e-11 Score=115.35 Aligned_cols=238 Identities=11% Similarity=-0.009 Sum_probs=167.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC--CCcchhHHH
Q 044988 224 MISGCAQNGKSRQALSLFNEMRRA----RVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR--EPVLVSLNN 296 (538)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~ 296 (538)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+....+.....+ .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999988763 1111 235677788888889999999998888877643322 223355778
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh---c
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN---W 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 373 (538)
.+...|...|++++|...|++..+ ...+.++......++..+...+...|++++|...+++..+. .
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYS-----------MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-----------HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999988653 11111222222234444555555566777777777766541 0
Q ss_pred CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHchhccC
Q 044988 374 GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----M--KPN-DAVLGSLLLGCRIHNN---AELASQVAQKLVAEID 442 (538)
Q Consensus 374 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~ 442 (538)
+..| ...++..+...|.+.|++++|.+.+++.. . .|. ...+..+...+...|+ +++|+.++++. +..
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~ 335 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLY 335 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCH
Confidence 2224 36788999999999999999999998763 1 122 2234566677888888 88888888886 444
Q ss_pred CCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 443 PEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 443 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|.....+. .++.+|.+.|++++|.+.+++..+
T Consensus 336 ~~~~~~~~-~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAI-DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555566 899999999999999999999864
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=8e-11 Score=110.10 Aligned_cols=204 Identities=15% Similarity=0.053 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-----chHHHHHHHHHccCCcHHHHHHHHHHHHh----CCCC-chhH
Q 044988 86 WNQMIRGHARSETPEKSVYLYKQMIDKETEPDE-----YTYSFLLSVCARCGLFREGEQVHGRVLAS----GYCS-NVFI 155 (538)
Q Consensus 86 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 155 (538)
+......+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+++..+. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344456667778888888888887764 2332 45667777777888888888877776543 1111 1334
Q ss_pred HhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC--ChHHHHHHHHHHHHcCC
Q 044988 156 RTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR--NVVSWTTMISGCAQNGK 233 (538)
Q Consensus 156 ~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~~~ 233 (538)
+..+...|...|+ +++|...+++ |.++......+ ...++..+...|...|+
T Consensus 86 ~~~l~~~~~~~g~---~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 86 SGNLGNTLKVLGN---FDEAIVCCQR------------------------HLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHH------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC---HHHHHHHHHH------------------------HHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 5555555555555 5555554432 12222222211 12356677777777777
Q ss_pred --------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCC-
Q 044988 234 --------------------SRQALSLFNEMRRA----RVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGR- 287 (538)
Q Consensus 234 --------------------~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 287 (538)
+++|...+++.... +..| ....+..+...+...|+++.|...++...+.....+
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777665431 1111 123445555555666666666666665554311101
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.+....++..+...+...|++++|...+++.
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111224445555555566666665555543
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.6e-09 Score=106.98 Aligned_cols=420 Identities=9% Similarity=0.037 Sum_probs=279.2
Q ss_pred CccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCC---hhHHHHHHhcCC--C---CCcchH
Q 044988 15 SKALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGY---LINAHKVFEKTE--N---PSTAIW 86 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~--~---~~~~~~ 86 (538)
.+......++..+.+.+.+..+..+++.++.. ++.+...|...+..-.+.|. ++.+..+|++.. . |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 35567888899998899999999999999988 45577889999999889998 999999999866 2 777788
Q ss_pred HHHHHHHhcCCCc--------hHHHHHHHHhHh-CCC-CCCc-chHHHHHHHHHc---------cCCcHHHHHHHHHHHH
Q 044988 87 NQMIRGHARSETP--------EKSVYLYKQMID-KET-EPDE-YTYSFLLSVCAR---------CGLFREGEQVHGRVLA 146 (538)
Q Consensus 87 ~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~li~~~~~---------~~~~~~a~~~~~~~~~ 146 (538)
..-+.-..+.++. +...++|+.... -|. .|+. ..|...+..... .++++.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877765555443 334578887765 365 5543 577777765442 3456788899999885
Q ss_pred hCCCCchhHHhHHHHHHHhcCCCC----------ChhHHHHHhhc-------CCC--------------C--C------c
Q 044988 147 SGYCSNVFIRTNLMNLYLMSGGEC----------GVGCARLLFDD-------MPA--------------R--S------V 187 (538)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~g~~~----------~~~~a~~~~~~-------~~~--------------~--~------~ 187 (538)
.....-..+|......-...+... .++.|...+.+ +.. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 322212233322222111111100 02333333322 111 0 0 1
Q ss_pred hhHHHHHHHHHhcC-------CHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHH
Q 044988 188 VSWNSLLKGYVKRG-------DIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQAL-SLFNEMRRARVGLDQVAL 256 (538)
Q Consensus 188 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~ 256 (538)
..|...+.---..+ ..+.+..+|++... .....|-..+..+...|+.++|. .+|++.... ++.+...+
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 34555554333322 12344556666542 35567888888888889999997 999999863 44456566
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhccC------CCCCc-----------chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 257 VAALSACAEIGDLKLGKWIHSYVEENFSV------GREPV-----------LVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 257 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
...+....+.|+++.|..+|+.+.+.... ...|. ...+|...+....+.|..+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777788899999999999998875100 00131 23478888888888999999999999876
Q ss_pred CC-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHH
Q 044988 320 RR-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEA 398 (538)
Q Consensus 320 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 398 (538)
+. ...++...+. ...+.- ...++.+.|..+|+...+.+ +-+...|...++.....|+.+.|
T Consensus 462 ~~~~~~~~~lyi~---------------~A~lE~-~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 462 RLKKLVTPDIYLE---------------NAYIEY-HISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HTGGGSCTHHHHH---------------HHHHHH-TTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCCCChHHHHH---------------HHHHHH-HhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHH
Confidence 43 2222222111 011111 11245899999999998874 23466677888888889999999
Q ss_pred HHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHH
Q 044988 399 FSLVQNMP-MKP----NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVY 457 (538)
Q Consensus 399 ~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~ 457 (538)
..+|++.. ..| ....|...+..-.+.|+.+.+.++.+++ .+..|+++. .. .+++-|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~-~~~~P~~~~-~~-~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF-FEKFPEVNK-LE-EFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH-HHHSTTCCH-HH-HHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCcH-HH-HHHHHh
Confidence 99999875 234 2468888899999999999999999999 999999876 44 444433
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=1.1e-11 Score=121.85 Aligned_cols=218 Identities=15% Similarity=0.076 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHH
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDL-KLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEA 311 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 311 (538)
.+++++..+++.... .+.+...+..+...+...|++ ++|...++.+.+. .|.+...+..+..+|...|++++|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 356666777665543 234677788888888888999 9999999988887 677788888999999999999999
Q ss_pred HHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHH
Q 044988 312 YGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDL 388 (538)
Q Consensus 312 ~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 388 (538)
...|++..+ |+...+..+...|...+.... ....|++++|...|++..+. .| +...|..+..+
T Consensus 157 ~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~-----------~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSG-----------DEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCH-----------HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhccCCh-----------hhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999998765 444444444444444300000 00116889999999998876 45 58899999999
Q ss_pred hhhc--------CChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH
Q 044988 389 FSRA--------GLMDEAFSLVQNMP-MKP----NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 389 ~~~~--------g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
|... |++++|++.|++.. ..| +...|..+..++...|++++|.+.|+++ ..+.|++...+. .++.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~a~~-~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA-AALDPAWPEPQQ-REQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHH
Confidence 9998 99999999999874 355 7889999999999999999999999999 999999998788 9999
Q ss_pred HHHhcCChHHHHHHHHH
Q 044988 456 VYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 456 ~~~~~g~~~~A~~~~~~ 472 (538)
++...|++++|++.+.+
T Consensus 301 ~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999975443
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=6.6e-11 Score=100.27 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHH
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFEC 368 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (538)
..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.| ++++|...+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------------------~~~~a~~~~~~ 64 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--------------------LPNDAIESLKK 64 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHH
Confidence 34445555555555555555555555443 12333333333333333 44444555555
Q ss_pred hhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC
Q 044988 369 MNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 369 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
.... .| +...+..+...+...++++.|.+.+++.. .+.+...+..+...+...|++++|++.++++ .+..|++
T Consensus 65 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~~ 140 (184)
T 3vtx_A 65 FVVL---DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT-ISIKPGF 140 (184)
T ss_dssp HHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTC
T ss_pred HHhc---CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH-HHhcchh
Confidence 5443 23 35566666677777777777777776653 2334666777777788888888888888888 7778888
Q ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 446 AAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.++. .++.+|.+.|++++|++.|++..+
T Consensus 141 ~~~~~-~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 IRAYQ-SIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777 788888888888888888887765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1.7e-10 Score=110.38 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 382 YGCMVDLFSRAGL---MDEAFSLVQNMPMKPN-DAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 382 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
+..+...|...|+ +++|+.++++....|+ ...+..+...+...|++++|...++++.
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556667777777 7777777777653333 3355566667777788888887777773
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=114.96 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccC---CC
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRA-------RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSV---GR 287 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 287 (538)
..++..+...+...|++++|..+|+++.+. ........+..+...+...|+++.|...++.+.+.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777778888888888888888887662 22234556677777788888888888888877665211 12
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccCcHHHHHHH
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ--GYAQEALLTFLGVLSACSHGGFVDEGRQF 365 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~ll~~~~~~~~~~~a~~~ 365 (538)
.+....++..+...|...|++++|...|+++.+- +.+. ++.......+..+...+...|++++|..+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----------REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556778889999999999999999999886431 1000 11112224455566666677777788888
Q ss_pred HHHhhhhc-----CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHH
Q 044988 366 FECMNQNW-----GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----------MKPN-------DAVLGSLLLGCR 422 (538)
Q Consensus 366 ~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-------~~~~~~l~~~~~ 422 (538)
++++.+.. +..| ...++..+..+|...|++++|.+.++++. ..+. ...+..+...+.
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 77766531 1133 35678899999999999999999998764 1111 112222233345
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+.+.++...++.. ....|.....+. .++.+|.+.|++++|.+++++..+
T Consensus 256 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 256 DGTSFGEYGGWYKAC-KVDSPTVTTTLK-NLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCSCCCC----------CHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCCCchHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666677777777 667788888778 999999999999999999998764
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=4e-11 Score=117.09 Aligned_cols=336 Identities=10% Similarity=-0.047 Sum_probs=218.3
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcC-
Q 044988 123 FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRG- 201 (538)
Q Consensus 123 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g- 201 (538)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+....++|...|++..+.+...+..+...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788899999999999999887 34456667778888888222389999999988777778888887666655
Q ss_pred ----CHHHHHHHHccCCC-CChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 044988 202 ----DIDGAWKIFDEMPH-RNVVSWTTMISGCAQNGKSR---QALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGK 273 (538)
Q Consensus 202 ----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 273 (538)
++++|...|++..+ .+...+..|...|...+..+ ++.+.+......|. ......+...|...+.++.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 78899999988654 34457888888888776543 45555555555453 334556666777777665554
Q ss_pred HHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC---CHHHHHHHHHhcCCC---CcchHHHHHHHHHhc----CCccHHH
Q 044988 274 WIHSYVEENFSVGREPVLVSLNNALIHMYASCG---EIEEAYGVFRKMQRR---NTVSWTSMITGFAKQ----GYAQEAL 343 (538)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~----~~~~~a~ 343 (538)
.....+.+. ....++..+..|...|...| +.++|.+.|++..+. +...+..+...|... ++.++|+
T Consensus 162 ~~a~~~~~~----a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 162 DDVERICKA----ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHH----HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 443333333 12233336778999999999 899999999987653 333335666666544 5777777
Q ss_pred HHHHH-----------HHHH-h--cccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcC-----ChHHHHHHHHh
Q 044988 344 LTFLG-----------VLSA-C--SHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAG-----LMDEAFSLVQN 404 (538)
Q Consensus 344 ~~~~~-----------ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 404 (538)
..|.. +... + ...+++++|...|++..+. | +...+..|...|. .| ++++|.+.|++
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 44333 3333 3 4578999999999998865 4 5667777777777 45 89999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 044988 405 MPMKPNDAVLGSLLLGCRI----HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAA----AKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 476 (538)
.. ..+...+..|...|.. ..++++|...|++. .+ +.++.... .|+.+|.. .++.++|..+++...+.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-a~--~g~~~A~~-~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-AR--NGQNSADF-AIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-HT--TTCTTHHH-HHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-Hh--hChHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 88 6677888888777766 34899999999988 44 44455566 78888875 45899999999999887
Q ss_pred CC
Q 044988 477 GV 478 (538)
Q Consensus 477 ~~ 478 (538)
|.
T Consensus 388 g~ 389 (452)
T 3e4b_A 388 DT 389 (452)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=1.7e-10 Score=97.66 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHH
Q 044988 253 QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSM 329 (538)
Q Consensus 253 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~l 329 (538)
...|..+...+...|++++|...|+.+.+. .|.+..++..+..+|.+.|++++|...+.+... .+...+..+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 344555555555555555555555555554 455556666666666666666666666665543 122233333
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C
Q 044988 330 ITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M 407 (538)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 407 (538)
...+... ++++.|...+.+..+. .| +...+..+..+|.+.|++++|++.|++.. .
T Consensus 80 ~~~~~~~--------------------~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 80 GSANFMI--------------------DEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHHT--------------------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHc--------------------CCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 3333333 3555666666666554 33 46677788888888888888888887763 2
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 408 K-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 408 ~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
. .+..+|..+..++.+.|++++|++.|+++ .++.|+++.
T Consensus 137 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~a~ 176 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA-LEKEEKKAK 176 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTHHHHH
T ss_pred cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCccCHH
Confidence 3 34677888888888888888888888888 777776543
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=5.8e-10 Score=103.06 Aligned_cols=218 Identities=9% Similarity=0.007 Sum_probs=152.0
Q ss_pred HHHHHHHccCCC---CChHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 044988 204 DGAWKIFDEMPH---RNVVSWTTMISGCA-------QNGKS-------RQALSLFNEMRRARVGL-DQVALVAALSACAE 265 (538)
Q Consensus 204 ~~A~~~~~~m~~---~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 265 (538)
++|..+|++... .+...|..++..+. +.|++ ++|..+|++..+. +.| +...+..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 566666666553 35556777666654 34775 7888888888763 234 45577777888888
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHH
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVS-LNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALL 344 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 344 (538)
.|+++.|..+|+.+.+. .|.+.. +|..++..+.+.|++++|..+|++..+.++..+...+
T Consensus 112 ~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-------------- 172 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV-------------- 172 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH--------------
T ss_pred cCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH--------------
Confidence 88888888888888875 444444 7778888888888888888888887653222211111
Q ss_pred HHHHHHHH-hcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCC----CC--CHHHHHHH
Q 044988 345 TFLGVLSA-CSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPM----KP--NDAVLGSL 417 (538)
Q Consensus 345 ~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l 417 (538)
..... +...|+++.|..+|+...+.. +-+...|..++..+.+.|++++|..+|++... .| ....|..+
T Consensus 173 ---~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 173 ---TAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp ---HHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 00111 112468888888888887652 22577888888888888999999888887742 34 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 418 LLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+....+.|+.+.|..+++++ .+..|++..
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a-~~~~p~~~~ 276 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRR-FTAFREEYE 276 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHH-HHHTTTTTS
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHcccccc
Confidence 88888888989998888888 788887654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=6.7e-11 Score=116.22 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=141.9
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHH
Q 044988 99 PEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLF-REGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARL 177 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~ 177 (538)
+++++..++...... +.+...+..+...+...|++ ++|...|++.++.. +.+...+..+..+|...|+ +++|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~---~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD---VTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---HHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC---HHHHHH
Confidence 445555555544321 23455666666666777777 77777777776654 3445666666666766666 666666
Q ss_pred HhhcCCC--CCchhHHHHHHHHHhc---------CCHHHHHHHHccCCC---CChHHHHHHHHHHHHc--------CCHH
Q 044988 178 LFDDMPA--RSVVSWNSLLKGYVKR---------GDIDGAWKIFDEMPH---RNVVSWTTMISGCAQN--------GKSR 235 (538)
Q Consensus 178 ~~~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------~~~~ 235 (538)
.|++..+ |+...+..+...+... |++++|+..|++..+ .+...|..+..+|... |+++
T Consensus 159 ~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 159 CFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 6666543 3445555555666666 777777777776542 3456777777777777 7888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 044988 236 QALSLFNEMRRARVG--LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYG 313 (538)
Q Consensus 236 ~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 313 (538)
+|+..|++..+.... -+...+..+..++...|++++|...++...+. .|.+...+..+..++...|++++|.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888774210 36777778888888888888888888888876 56667777778888888888888887
Q ss_pred HHHhc
Q 044988 314 VFRKM 318 (538)
Q Consensus 314 ~~~~m 318 (538)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 77665
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=6.2e-11 Score=121.21 Aligned_cols=165 Identities=17% Similarity=0.222 Sum_probs=136.1
Q ss_pred CCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHH
Q 044988 286 GREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEG 362 (538)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a 362 (538)
+..|.+...++.|...|.+.|++++|.+.|++..+ | +..+|..+...|.+.| ++++|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--------------------~~~eA 62 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--------------------KLQEA 62 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------------------CHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHH
Confidence 35677888888999999999999999999988764 3 4556666666666555 66777
Q ss_pred HHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 044988 363 RQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVA 439 (538)
Q Consensus 363 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 439 (538)
...|++..+. .|+ ...|..+..+|...|++++|++.|++.. ..|+ ...|..+..++...|++++|++.|+++ .
T Consensus 63 ~~~~~~Al~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A-l 138 (723)
T 4gyw_A 63 LMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA-L 138 (723)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 7888887765 564 7899999999999999999999998873 4454 788999999999999999999999999 9
Q ss_pred ccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 440 EIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 440 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
++.|++...+. .++.+|...|++++|.+.+++..+
T Consensus 139 ~l~P~~~~a~~-~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 139 KLKPDFPDAYC-NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHCSCCHHHHH-HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HhCCCChHHHh-hhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999888 999999999999999998888753
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=7.1e-10 Score=102.48 Aligned_cols=208 Identities=13% Similarity=0.064 Sum_probs=109.1
Q ss_pred hHHHHHHhcCC---CCCcchHHHHHHHHh-------cCCCc-------hHHHHHHHHhHhCCCCCC-cchHHHHHHHHHc
Q 044988 69 INAHKVFEKTE---NPSTAIWNQMIRGHA-------RSETP-------EKSVYLYKQMIDKETEPD-EYTYSFLLSVCAR 130 (538)
Q Consensus 69 ~~a~~~~~~~~---~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 130 (538)
+.|...|++.. +.++..|..++..+. +.|++ ++|..+|++..+. +.|+ ...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 34455555443 234445555555443 24554 6666666666652 1343 3356666666666
Q ss_pred cCCcHHHHHHHHHHHHhCCCCc-hh-HHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHHHH-HhcCCHH
Q 044988 131 CGLFREGEQVHGRVLASGYCSN-VF-IRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLKGY-VKRGDID 204 (538)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~ 204 (538)
.|+++.|..+|++.++. .|+ .. +|..++..+.+.|+ +++|..+|++..+. +...|....... ...|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG---IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666653 232 22 56666666666666 66666666554432 122222211111 1145555
Q ss_pred HHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCChHHHHHHHHH
Q 044988 205 GAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR-VGL--DQVALVAALSACAEIGDLKLGKWIHSY 278 (538)
Q Consensus 205 ~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~ 278 (538)
+|..+|++..+ .+...|..++..+.+.|++++|..+|++..... +.| ....+...+....+.|+.+.|..+++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555432 234455666666666666666666666666542 333 234455555555555666666666665
Q ss_pred HHHh
Q 044988 279 VEEN 282 (538)
Q Consensus 279 ~~~~ 282 (538)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=5.5e-10 Score=106.59 Aligned_cols=239 Identities=9% Similarity=-0.008 Sum_probs=167.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC--CcchhHH
Q 044988 223 TMISGCAQNGKSRQALSLFNEMRRAR-VGLD----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE--PVLVSLN 295 (538)
Q Consensus 223 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~ 295 (538)
.....+...|++++|+..|++..+.. -.++ ..++..+...+...|+++.|...+....+.....+. +....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34556778899999999999887631 1122 446777888888999999999999888776433222 2345677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC-
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG- 374 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 374 (538)
+.+...|...|++++|.+.|++..+ ...+.++......++..+..++...|++++|...+++..+...
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALE-----------LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-----------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999987643 1122222222224455555566666677777777777665110
Q ss_pred -CCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHchhccC
Q 044988 375 -IKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----M--KPN-DAVLGSLLLGCRIHNN---AELASQVAQKLVAEID 442 (538)
Q Consensus 375 -~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~ 442 (538)
..| ...++..+...|.+.|++++|...+++.. . .|. ...+..+...+...++ +++|+..+++. +..
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~ 332 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLH 332 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CCh
Confidence 133 36788899999999999999999998763 1 233 3345555556777778 88888888875 334
Q ss_pred CCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 443 PEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 443 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|.....+. .++..|.+.|++++|...+++..+
T Consensus 333 ~~~~~~~~-~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 333 AYIEACAR-SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455466 899999999999999999998763
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=7.1e-10 Score=93.67 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=131.7
Q ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHH
Q 044988 290 VLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFF 366 (538)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~ 366 (538)
.....+..+...+...|++++|...|+++.+. +...+..+...+.. .|++++|...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~ 65 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK--------------------TGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH--------------------cCCHHHHHHHH
Confidence 33456667888899999999999999998763 33444444444444 44777788888
Q ss_pred HHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC
Q 044988 367 ECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE 444 (538)
Q Consensus 367 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~ 444 (538)
+++.+.. +.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++ ....|+
T Consensus 66 ~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~ 142 (186)
T 3as5_A 66 ERSLADA--PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPN 142 (186)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCcc
Confidence 8887651 3357788899999999999999999998874 3456788888889999999999999999999 888899
Q ss_pred CcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 445 QAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 445 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
+...+. .++.++...|++++|.+.+++..+.
T Consensus 143 ~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 143 EGKVHR-AIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888788 9999999999999999999998753
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=113.28 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=130.4
Q ss_pred CCCCCCCccccHHHHHHHHhccCChHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC-
Q 044988 9 ANPATSSKALTTRQIFSLLQIRNTTKTLFQIHSQIIIN-------GFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN- 80 (538)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 80 (538)
..+..|....++..+...+...|+++.|..+++...+. ..+....++..+...|...|++++|...|++...
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455556677888888899999999999999998874 2333456788888999999999999998876541
Q ss_pred ----------CCcchHHHHHHHHhcCCCchHHHHHHHHhHhC------CCCC-CcchHHHHHHHHHccCCcHHHHHHHHH
Q 044988 81 ----------PSTAIWNQMIRGHARSETPEKSVYLYKQMIDK------ETEP-DEYTYSFLLSVCARCGLFREGEQVHGR 143 (538)
Q Consensus 81 ----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 143 (538)
.....+..+...+...|++++|...|++..+. +-.| ....+..+...+...|++++|..++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12346788888899999999999999988753 2122 344677888888999999999999988
Q ss_pred HHHh------CCCC-chhHHhHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 144 VLAS------GYCS-NVFIRTNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 144 ~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
..+. +..| ...++..+..+|...|+ +++|...+++..
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 222 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK---FKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 8775 2122 34567788888888888 888888877654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=2.1e-08 Score=95.30 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcch
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRA----RVG--LD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLV 292 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (538)
++..+...+...|++++|...+++..+. +.. |. ...+..+...+...|+++.|...+....+.....+.+...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556667778888888888888877642 221 22 2344556666677777777777777776653222222233
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 293 SLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
..+..+...+...|++++|...+++.
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666677777777777766654
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.3e-09 Score=99.71 Aligned_cols=201 Identities=10% Similarity=-0.007 Sum_probs=136.7
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCc-chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCcc
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPV-LVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQ 340 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 340 (538)
.+...|++++|...+....+.....+.+. ...+++.+..+|...|++++|...|++.. ..+...|+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-----------~l~~~~g~~~ 114 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-----------QIFTHRGQFR 114 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------HHHHHcCCHH
Confidence 35556777777776666655422112222 25677888899999999999998888753 3445566666
Q ss_pred HHHHHHHHHHHHhccc-CcHHHHHHHHHHhhhhcCCCcc----HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC---H
Q 044988 341 EALLTFLGVLSACSHG-GFVDEGRQFFECMNQNWGIKPR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN---D 411 (538)
Q Consensus 341 ~a~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~ 411 (538)
.+..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++++|+..|++.. ..|+ .
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 6667777778888885 8899999988887754210111 3578889999999999999999999873 2222 1
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccH----HHHHHHHHH--hcCChHHHHHHHHHHH
Q 044988 412 -----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGY----LALVANVYA--AAKRWQDVAAVRQKMI 474 (538)
Q Consensus 412 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~----~~~l~~~~~--~~g~~~~A~~~~~~m~ 474 (538)
..|..+..++...|++++|...+++. ..+.|+..... ...++.++. ..+++++|+..|+++.
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEG-QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG-GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 25677788899999999999999999 88888865532 113455554 4567888888876654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.7e-09 Score=93.75 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=156.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHH
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLN 295 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 295 (538)
.|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++...+. .|.+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchHHHH
Confidence 3567788888899999999999999999988664477788888888899999999999999999986 77788888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
..+..+|...|++++|...|++..+ | +...+..+... |..+...+...|++++|...|++..+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY-------------YLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH-------------HHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999998765 3 33232333322 333445556677999999999999854
Q ss_pred cCCCcc---HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 373 WGIKPR---IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 373 ~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.|+ ...+..+..+|...|+. .++++. ...+...+.... ....+.+++|+..++++ .++.|+++.
T Consensus 147 ---~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a-~~l~p~~~~ 215 (228)
T 4i17_A 147 ---TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEA-VTLSPNRTE 215 (228)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHCTTCHH
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH-hhcCCCCHH
Confidence 665 56788888888766643 222221 123344444333 34456789999999999 999999988
Q ss_pred cHHHHHHHH
Q 044988 448 GYLALVANV 456 (538)
Q Consensus 448 ~~~~~l~~~ 456 (538)
... .+..+
T Consensus 216 ~~~-~l~~i 223 (228)
T 4i17_A 216 IKQ-MQDQV 223 (228)
T ss_dssp HHH-HHHHH
T ss_pred HHH-HHHHH
Confidence 555 55544
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=4.9e-08 Score=92.80 Aligned_cols=275 Identities=12% Similarity=0.045 Sum_probs=162.5
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhCCCCCCcc-----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-Cc----hhHHhH
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDKETEPDEY-----TYSFLLSVCARCGLFREGEQVHGRVLASGYC-SN----VFIRTN 158 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 158 (538)
....+...|++++|...+++..... +++.. ++..+...+...|+++.|...+++....... ++ ..++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3445567888888888888877643 22221 3555666777788888888888777653210 11 122445
Q ss_pred HHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC----ChHHHHHHHHHHHHcCCH
Q 044988 159 LMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR----NVVSWTTMISGCAQNGKS 234 (538)
Q Consensus 159 l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~~~~ 234 (538)
+...+...|+ +++|...++ +++.+......+ ....+..+...+...|++
T Consensus 99 la~~~~~~G~---~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 99 QSEILFAQGF---LQTAWETQE------------------------KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHTTC---HHHHHHHHH------------------------HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCC---HHHHHHHHH------------------------HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 5555666666 666655443 223333333322 123566677888899999
Q ss_pred HHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHH--HHHHHHHHhCCCH
Q 044988 235 RQALSLFNEMRRARVG--L--DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLN--NALIHMYASCGEI 308 (538)
Q Consensus 235 ~~a~~~~~~m~~~g~~--p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~ 308 (538)
++|...+++....... + ...++..+...+...|+++.|...++.........+.+...... ...+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 9999999988763221 1 23567777888889999999999999887763222222111111 1234557799999
Q ss_pred HHHHHHHHhcCCCCcch-HHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCccH-HHHH
Q 044988 309 EEAYGVFRKMQRRNTVS-WTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW---GIKPRI-EHYG 383 (538)
Q Consensus 309 ~~a~~~~~~m~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~-~~~~ 383 (538)
++|...+++...++... +. . ...+..+...+...|++++|...++...... +..++. ..+.
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~------------~--~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHF------------L--QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGG------------G--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchh------------h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 99999999987643210 00 0 0011222333344445566666665544321 211222 2555
Q ss_pred HHHHHhhhcCChHHHHHHHHhC
Q 044988 384 CMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
.+..++...|+.++|...+++.
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 6666777777777777777654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=8.2e-10 Score=105.39 Aligned_cols=213 Identities=11% Similarity=0.024 Sum_probs=131.6
Q ss_pred HHccCCcHHHHHHHHHHHHhCC-CC----chhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC-----C-----CchhHHH
Q 044988 128 CARCGLFREGEQVHGRVLASGY-CS----NVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA-----R-----SVVSWNS 192 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~-----~-----~~~~~~~ 192 (538)
+...|++++|...+++..+... .+ ...++..+..+|...|+ .+.|...+++..+ + ...+++.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ---THVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4455666666666665554310 01 13345555566666666 5555555444321 1 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 044988 193 LLKGYVKRGDIDGAWKIFDEMPH-----RN----VVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGLDQVALVAA 259 (538)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l 259 (538)
+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 66666666776666666655432 11 246778888899999999999999988761 222236778888
Q ss_pred HHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC---HHHHHHHHHhcCCC--CcchHHHHHHHHH
Q 044988 260 LSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE---IEEAYGVFRKMQRR--NTVSWTSMITGFA 334 (538)
Q Consensus 260 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~--~~~~~~~li~~~~ 334 (538)
...+.+.|+++.|...++...+.....+.+.....+..+...|...|+ +++|...+++.... ....+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 888999999999999999988875544455555566677777777888 78888888774331 1123334444455
Q ss_pred hcCCccHHH
Q 044988 335 KQGYAQEAL 343 (538)
Q Consensus 335 ~~~~~~~a~ 343 (538)
..|++++|.
T Consensus 348 ~~g~~~~A~ 356 (378)
T 3q15_A 348 SSCHFEQAA 356 (378)
T ss_dssp HTTCHHHHH
T ss_pred HCCCHHHHH
Confidence 555444333
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=4.2e-09 Score=92.53 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---cchHH
Q 044988 251 LDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRN---TVSWT 327 (538)
Q Consensus 251 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~ 327 (538)
.|...+......+...|++++|...|+...+. ..+.+...+..+..++...|++++|...|++..+.+ ...|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL----TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 46677777888888888888888888888887 332555666668888888888888888888776422 22333
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-H-------HHHHHHHHHhhhcCChHHHH
Q 044988 328 SMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-I-------EHYGCMVDLFSRAGLMDEAF 399 (538)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~ 399 (538)
.+. .++...|++++|...+++..+. .|+ . ..|..+...+...|++++|+
T Consensus 81 ~l~--------------------~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 81 GKS--------------------AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHH--------------------HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH--------------------HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence 333 3444445777788888888765 343 3 45777777788888888888
Q ss_pred HHHHhCC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 400 SLVQNMP-MKPN---DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 400 ~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.|++.. ..|+ ...|..+...+.. .+..+++++ ..+.+.....|. . ......+.+++|+..+++..+
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~-----~~~~~~~~a-~~~~~~~~~~~~-~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFYN-----NGADVLRKA-TPLASSNKEKYA-S--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH-----HHHHHHHHH-GGGTTTCHHHHH-H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHH-----HHHHHHHHH-HhcccCCHHHHH-H--HHHHHHHHHHHHHHHHHHHhh
Confidence 8887764 4565 3455566566543 344455666 555555544333 2 223445667999999999886
Q ss_pred C
Q 044988 476 M 476 (538)
Q Consensus 476 ~ 476 (538)
.
T Consensus 209 l 209 (228)
T 4i17_A 209 L 209 (228)
T ss_dssp H
T ss_pred c
Confidence 3
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=1.3e-08 Score=85.83 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=97.5
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHH
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISG 227 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 227 (538)
..+..+...+...|+ +++|...++++.+. +...+..+...+...|++++|...+++..+ .+...|..+...
T Consensus 9 ~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGR---YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345555566666666 66666666665542 344555566666666666666666665432 344566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+. .|.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-----RPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHHcCC
Confidence 667777777777777666542 234556666666666777777777777766665 34555566666677777777
Q ss_pred HHHHHHHHHhcC
Q 044988 308 IEEAYGVFRKMQ 319 (538)
Q Consensus 308 ~~~a~~~~~~m~ 319 (538)
+++|...+++..
T Consensus 160 ~~~A~~~~~~~~ 171 (186)
T 3as5_A 160 HEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666553
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=5.8e-09 Score=94.72 Aligned_cols=232 Identities=9% Similarity=0.050 Sum_probs=138.9
Q ss_pred cCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccC---CCCCcchhHHHHHHH
Q 044988 231 NGKSRQALSLFNEMRRA-------RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSV---GREPVLVSLNNALIH 300 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 300 (538)
.|++++|+.+|++..+. ..+....++..+...+...|+++.|...+..+.+.... +..+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555555555544431 11223445566666666777777777777666554210 124556677888999
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc-----
Q 044988 301 MYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ--GYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW----- 373 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 373 (538)
.|...|++++|...|++..+. +.+. .+.......+..+...+...|++++|..++++..+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEI-----------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-----------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhccHHHHHHHHHHHHHH-----------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999886431 0000 0001112445555566666667777777777765431
Q ss_pred CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHH
Q 044988 374 GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----------MKPN-DAVLGSLLLGCRIHN------NAELASQVAQ 435 (538)
Q Consensus 374 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~------~~~~A~~~~~ 435 (538)
+..| ...++..+..+|...|++++|.+.+++.. ..+. ...|..+.......+ .+..+...++
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1133 36688899999999999999999998763 1222 223333333333222 2444444555
Q ss_pred HchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 436 KLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 436 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.. ....|.....+. .++.+|.+.|++++|..++++..+
T Consensus 243 ~~-~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 243 AC-KVDSPTVNTTLR-SLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC-CCCCHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hc-CCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 445566666677 899999999999999999998775
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2e-08 Score=91.78 Aligned_cols=222 Identities=10% Similarity=-0.061 Sum_probs=151.9
Q ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 044988 203 IDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGLD-QVALVAALSACAEIGDLKLGKWIHS 277 (538)
Q Consensus 203 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~ 277 (538)
+++|...|++. ...|...|++++|...|++..+. |-.++ ..+|..+..+|.+.|++++|...++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666665543 55677888999998888877652 32222 4578888888889999999998888
Q ss_pred HHHHhccCCCCC-cchhHHHHHHHHHHhC-CCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 044988 278 YVEENFSVGREP-VLVSLNNALIHMYASC-GEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSH 355 (538)
Q Consensus 278 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~ 355 (538)
...+.....+.+ ....+++.+...|... |++++|...|++..+ .+-..+....+..++..+...+..
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~-----------~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE-----------WYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHhCCChHHHHHHHHHHHHHHHH
Confidence 887763221221 1245778899999996 999999999988643 112222222223456666677777
Q ss_pred cCcHHHHHHHHHHhhhhcCCCccH-----HHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHH-
Q 044988 356 GGFVDEGRQFFECMNQNWGIKPRI-----EHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDA------VLGSLLLGCR- 422 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~------~~~~l~~~~~- 422 (538)
.|++++|...|++..+...-.+.. ..|..+..++...|++++|...|++.. ..|+.. .+..++.++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 778999999999988652111111 257788889999999999999999874 345422 3444555554
Q ss_pred -hcCCHHHHHHHHHHchhccCCCCcc
Q 044988 423 -IHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 423 -~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
..+++++|+..|+++ ..+.|....
T Consensus 251 ~~~~~~~~A~~~~~~~-~~l~~~~~~ 275 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNF-MRLDKWKIT 275 (292)
T ss_dssp TCTTTHHHHHHHHTTS-SCCCHHHHH
T ss_pred CCHHHHHHHHHHhccC-CccHHHHHH
Confidence 456799999999988 778777655
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=1e-08 Score=105.02 Aligned_cols=158 Identities=9% Similarity=0.058 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHH
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNN 296 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 296 (538)
..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|...|+.+.+. .|.+...+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 345667777777777777777777776663 34 3556666666777777777777777777765 566666667
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+..+|...|++++|.+.|++..+ .+...|+.+...|...| ++++|...|++..+.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g--------------------~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG--------------------NIPEAIASYRTALKL- 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHh-
Confidence 777777777777777777766543 23344444444444444 555555666666544
Q ss_pred CCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 374 GIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 374 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
.|+ ...+..+..+|...|++++|.+.++++
T Consensus 141 --~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 141 --KPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred --CCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 453 566677777777777777776666543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=7e-09 Score=94.16 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc---CCCC
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRA------RVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFS---VGRE 288 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 288 (538)
.+|..+...|...|++++|...|++..+. .-.| ...++..+...+...|++++|...++.+.+... .+..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45677777777778888877777777653 1112 355666777777788888888888777766421 1124
Q ss_pred CcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 289 PVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
+....++..+...|...|++++|...+++..
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677788888889999999988888765
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.6e-08 Score=80.03 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=108.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRI 423 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 423 (538)
+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|...++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 445566667777999999999998865 2 3357788889999999999999999999874 34457788889999999
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.|++++|.+.++++ ....|++...+. .++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~-~~~~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKA-LELDPRSAEAWY-NLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH-HHhCCCChHHHH-HHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999 888898888778 8999999999999999999998764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1.1e-07 Score=85.31 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=131.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC-CcchhHHHHHHHHHHhCCCHHHHHHHH
Q 044988 237 ALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE-PVLVSLNNALIHMYASCGEIEEAYGVF 315 (538)
Q Consensus 237 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (538)
|+..|++....+ .++..++..+..++...|++++|.+.+...... +. +.+...+..++..+.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677777776654 556666667777788888888888888777554 22 367777778899999999999999999
Q ss_pred HhcCCCC-------cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Q 044988 316 RKMQRRN-------TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDL 388 (538)
Q Consensus 316 ~~m~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 388 (538)
++|.+.+ ..+...+..++... ....+++..|..+|+++.+. .|+..+-..++.+
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l----------------~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~ 220 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKF----------------ATNKETATSNFYYYEELSQT---FPTWKTQLGLLNL 220 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH----------------HHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHH
Confidence 9886522 33444444442221 11123778889999999765 4653343445558
Q ss_pred hhhcCChHHHHHHHHhCCC-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 389 FSRAGLMDEAFSLVQNMPM-----------KP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~-----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+.+.|++++|.+.++.+.. .| |..++..+|......|+ .|.++++++ ....|+++.
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL-~~~~P~hp~ 288 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL-VKLDHEHAF 288 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH-HHTTCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH-HHhCCCChH
Confidence 9999999999999986532 24 45666566666666787 899999999 999999987
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=5e-08 Score=87.59 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhccCCCCc---ccHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCC
Q 044988 415 GSLLLGCRIHNNAELASQVAQKLVAEIDPEQA---AGYLALVANVYAAA----------KRWQDVAAVRQKMIKMGVRKP 481 (538)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~ 481 (538)
..+...+...|++++|+..|+++ ....|+++ ..+. .++.+|... |++++|...++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~a~~-~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---- 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAV-FDAYPDTPWADDALV-GAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---- 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHCTTSTTHHHHHH-HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHccCHHHHHHHHHHH-HHHCCCCchHHHHHH-HHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----
Confidence 55677799999999999999999 88888854 3566 788888866 89999999999998642
Q ss_pred CceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHc
Q 044988 482 PGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQE 523 (538)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~ 523 (538)
+.++....+...+.++...+.+.
T Consensus 226 -------------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -------------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23566677777777777776653
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=1.7e-07 Score=86.37 Aligned_cols=232 Identities=13% Similarity=0.001 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHccCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 044988 200 RGDIDGAWKIFDEMPHRNVVSWTTMISGCAQ-NGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSY 278 (538)
Q Consensus 200 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 278 (538)
.|++++|.+++++..+..... +.. .++++.|...|.+. ...+...|+++.|...+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 456666766666543200000 111 36666666666654 3456778899999888887
Q ss_pred HHHhccCCCCC-cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccC
Q 044988 279 VEENFSVGREP-VLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGG 357 (538)
Q Consensus 279 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~ 357 (538)
..+.....+.+ .....++.+...|...|++++|...|++.. ..+...|+...+..++..+...|.. |
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-----------~l~~~~g~~~~~a~~~~~lg~~~~~-g 129 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-----------VMYVENGTPDTAAMALDRAGKLMEP-L 129 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-----------HHHHTTTCHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHHHHHc-C
Confidence 76653211221 234577788889999999999999888753 3344556666666777778888877 8
Q ss_pred cHHHHHHHHHHhhhhc---CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcC
Q 044988 358 FVDEGRQFFECMNQNW---GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKPN----DAVLGSLLLGCRIHN 425 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~ 425 (538)
++++|...|++..+.+ +..+ ...+++.+...|.+.|++++|++.|++.. ..++ ...+..+...+...|
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 9999999988876542 1111 14678889999999999999999998874 1122 235666667788889
Q ss_pred CHHHHHHHHHHchhccCCCCcccHH----HHHHHHHHhcCChHHHHH
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYL----ALVANVYAAAKRWQDVAA 468 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~----~~l~~~~~~~g~~~~A~~ 468 (538)
++++|...+++. . ..|+...... ..++.++ ..|+.+.+.+
T Consensus 210 ~~~~A~~~~~~a-l-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 210 DYVAAQKCVRES-Y-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp CHHHHHHHHHHH-T-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CHHHHHHHHHHH-h-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999999 7 8887654321 1344444 5677665555
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=3.7e-08 Score=88.42 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=116.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|+++.|...++.+.+... ..+..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ--IDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--CCchh
Confidence 455566667777777888888888888877643 43 45566666777777777777777777777510 11223
Q ss_pred hhHHHHHHHHHHh--------CCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHH
Q 044988 292 VSLNNALIHMYAS--------CGEIEEAYGVFRKMQR--RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDE 361 (538)
Q Consensus 292 ~~~~~~l~~~~~~--------~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~ 361 (538)
...+..+..++.. .|++++|...|+++.+ |+.. ....
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------------------------~~~~ 135 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---------------------------------LVDD 135 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---------------------------------THHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---------------------------------hHHH
Confidence 3444556666666 6666666666666543 2211 1111
Q ss_pred HHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CC
Q 044988 362 GRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIH----------NN 426 (538)
Q Consensus 362 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------~~ 426 (538)
+...+..+... -...+..+...|.+.|++++|+..|+++. ..|+ ...+..+..++... |+
T Consensus 136 a~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 136 ATQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 11111111110 01124566777888888888888887763 2343 34566666666655 88
Q ss_pred HHHHHHHHHHchhccCCCCcc
Q 044988 427 AELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+++|...++++ ....|+++.
T Consensus 211 ~~~A~~~~~~~-~~~~p~~~~ 230 (261)
T 3qky_A 211 YRRAVELYERL-LQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHH-HHHCTTCTH
T ss_pred HHHHHHHHHHH-HHHCCCChH
Confidence 89999999999 888898864
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.5e-07 Score=82.30 Aligned_cols=108 Identities=8% Similarity=-0.010 Sum_probs=73.0
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044988 351 SACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 429 (538)
......|+.++|...|+++.+. .|+ ...+..+.... ...... ......+...+.+.|++++
T Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-----------~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 104 RSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-----------AKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp ----CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-----------HHHHHHHHHHHHHHTCHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-----------HHHHHHHHHHHHHcCcHHH
Confidence 3344567889999999999865 454 33332221110 000000 0112345667889999999
Q ss_pred HHHHHHHchhccCCCCc---ccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 430 ASQVAQKLVAEIDPEQA---AGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
|+..|+++ .+..|+++ .++. .++.+|.+.|++++|.+.++.+...+.
T Consensus 166 A~~~~~~~-l~~~p~~~~~~~a~~-~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 166 VVNRVEGM-LRDYPDTQATRDALP-LMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHH-HHHSTTSHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHH-HHHCcCCCccHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99999999 88888876 3466 889999999999999999999887544
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.5e-07 Score=84.40 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCC--C-----ChHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHH
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMPH--R-----NVVSWTTMISGCA--QNG--KSRQALSLFNEMRRARVGLDQVALV 257 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~ 257 (538)
.+..++..+.+.|+.+.|.+.+++|.+ | +..+...+..+++ ..| ++.+|..+|+++.+. .|+..+-.
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~ 215 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQL 215 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHH
Confidence 344444445555555555555554432 2 1223333333311 112 455555555555432 23322222
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 044988 258 AALSACAEIGDLKLGKWIHSYVE 280 (538)
Q Consensus 258 ~li~~~~~~~~~~~a~~~~~~~~ 280 (538)
.++.++.+.|++++|+..++.+.
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334455555555555555443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.9e-08 Score=103.36 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=126.0
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 229 AQNGKSRQALSLFNEMR--------RARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 229 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
...|++++|++.|++.. +. -+.+...+..+..++...|++++|...++.+.+. .|.+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CcchHHHHHHHHH
Confidence 66788888888888877 32 2334566777777888888888888888888876 6667777778888
Q ss_pred HHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc
Q 044988 301 MYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP 377 (538)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 377 (538)
+|...|++++|.+.|++..+ | +...|..+...+.+.| ++++ ...|++..+. .|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g--------------------~~~~-~~~~~~al~~---~P 531 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG--------------------NTDE-HKFYQTVWST---ND 531 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------------------CCCT-TCHHHHHHHH---CT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------------------ChHH-HHHHHHHHHh---CC
Confidence 88888888888888887664 3 4555666666666555 4445 5777777654 44
Q ss_pred -cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHchhccCCCCcc
Q 044988 378 -RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNN-----AELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 378 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+...|..+..+|.+.|++++|++.|++.. ..|+ ...+..+..++...++ .+...+..+.. ..+.++.+.
T Consensus 532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l-~~~~~~~~~ 608 (681)
T 2pzi_A 532 GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV-EALPPTEPR 608 (681)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH-HTSCTTSTT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH-hhCCCCcHH
Confidence 46678888888888888888888888774 4565 4556666666555444 23333333333 445555555
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=1.2e-08 Score=82.78 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=94.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC
Q 044988 298 LIHMYASCGEIEEAYGVFRKMQRRN---TVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG 374 (538)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (538)
|...+...|++++|...+......+ ...+-.+...|.+.| ++++|...|++..+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--------------------~~~~A~~~~~~al~~-- 60 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--------------------EYDLAKKYICTYINV-- 60 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHH--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHh--
Confidence 3445556677777777777766532 233444444444444 666677777777754
Q ss_pred CCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHH-HHHchhccCCCCcccHH
Q 044988 375 IKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQV-AQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 375 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~p~~~~~~~ 450 (538)
.| +..+|..+..+|.+.|++++|+..|++.. ..|+ ...|..+...+.+.|++++|.+. ++++ .++.|+++.+|.
T Consensus 61 -~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a-l~l~P~~~~~~~ 138 (150)
T 4ga2_A 61 -QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA-AKLFPGSPAVYK 138 (150)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH-HHHSTTCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhCcCCHHHHH
Confidence 45 47788888888888888888888887763 3444 67777888888888887765554 5777 888888888777
Q ss_pred HHHHHHHHhcCC
Q 044988 451 ALVANVYAAAKR 462 (538)
Q Consensus 451 ~~l~~~~~~~g~ 462 (538)
+...++.+.|+
T Consensus 139 -l~~~ll~~~G~ 149 (150)
T 4ga2_A 139 -LKEQLLDCEGE 149 (150)
T ss_dssp -HHHHHHHTCCC
T ss_pred -HHHHHHHHhCc
Confidence 77777777664
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=7.8e-08 Score=77.62 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=91.1
Q ss_pred CCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 374 GIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 374 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
.+.|+ ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..|+++ ..+.|+++..+.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a-l~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA-FALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH-HhhCCCCcHHHH
Confidence 45674 6788899999999999999999999884 344 5888999999999999999999999999 999999999889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 451 ALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 451 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.++.+|.+.|++++|+..|++..+.
T Consensus 109 -~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 -HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=9.5e-08 Score=87.99 Aligned_cols=200 Identities=11% Similarity=0.004 Sum_probs=135.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHH
Q 044988 231 NGKSRQALSLFNEMRRARVGLDQVALVAALSACAE-IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIE 309 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (538)
.|++++|.+++++..+..- .. +.+ .++++.|...|.. ....|...|+++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-------------------a~~~~~~~g~~~ 53 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-------------------AAVAFKNAKQLE 53 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-------------------HHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-------------------HHHHHHHcCCHH
Confidence 4667778888777665311 10 111 3566666655543 455677889999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc---CCCc-cHHHHHHH
Q 044988 310 EAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW---GIKP-RIEHYGCM 385 (538)
Q Consensus 310 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l 385 (538)
+|...|.+.. ..+.+.++...+...|..+...|...|++++|...|++..+.+ |-.. -..++..+
T Consensus 54 ~A~~~~~~al-----------~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 54 QAKDAYLQEA-----------EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998887753 3334445555555566666666666666666666666654431 1111 14577888
Q ss_pred HHHhhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc------cHHH
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP-M---KPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA------GYLA 451 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~------~~~~ 451 (538)
..+|.. |++++|++.|++.. . ..+ ..++..+...+...|++++|+..++++ ..+.|.... .+.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~- 199 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE-KSMYKEMENYPTCYKKCI- 199 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHH-
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHcCChhHHHHHHH-
Confidence 899988 99999999998763 1 111 457788888999999999999999999 665554431 344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.++.++...|++++|...+++..
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 66777888899999999999987
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=1.9e-07 Score=73.72 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
.|..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 355556666666677777766666432 345567777777777788888888887776643 3345666677777777
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
.|+++.|...++.+.+. .|.+...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 78888888877777776 45555666677777778888888877777654
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=2e-07 Score=80.30 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+..+|.+.|++++|...|++..+ | +...+..+...+...| ++++|...|++..+.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~- 117 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG--------------------QEKDALRMYEKILQL- 117 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHc-
Confidence 477788888888888888887664 2 4445555555555554 666777777777765
Q ss_pred CCCc-cHHHHHHHHHHhhhcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 374 GIKP-RIEHYGCMVDLFSRAGL--MDEAFSLVQNMPMKPNDA--VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 374 ~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.| +..++..+..+|...|. .+.+...++... .|+.. .+.....++...|++++|+..|+++ ..+.|+...
T Consensus 118 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a-l~l~P~~~~ 192 (208)
T 3urz_A 118 --EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKV-ILRFPSTEA 192 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTTSCCHHH
T ss_pred --CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCHHH
Confidence 45 47778888887766553 445566666654 44433 3444555667788999999999999 888887543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.8e-07 Score=78.10 Aligned_cols=154 Identities=8% Similarity=0.047 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhh
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQN 372 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (538)
..+...+.+.|++++|...|++..+ .+...+..+...+...| ++++|...++...+.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------------------~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK--------------------QFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--------------------CHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHhhhc
Confidence 3566667777778888877777765 23445555555555554 566666777766544
Q ss_pred cCCCccHHHHHHHHHH-hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC--cc
Q 044988 373 WGIKPRIEHYGCMVDL-FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ--AA 447 (538)
Q Consensus 373 ~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~--~~ 447 (538)
.|+...+..+... +...+...+|...+++.. ..| +...+..+...+...|++++|...++++ ....|+. ..
T Consensus 70 ---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~ 145 (176)
T 2r5s_A 70 ---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI-LKVNLGAQDGE 145 (176)
T ss_dssp ---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTTTTTH
T ss_pred ---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccChHH
Confidence 3333322222211 112222334566666552 344 4777888888888999999999999988 7888764 33
Q ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 448 GYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
.+. .++.++...|+.++|...|++..
T Consensus 146 a~~-~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 146 VKK-TFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHH-HHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHhCCCCcHHHHHHHHH
Confidence 567 88888999999999998888765
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=2.3e-07 Score=79.91 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=94.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHccCChHHHHHHHHHHHHhccCCC
Q 044988 225 ISGCAQNGKSRQALSLFNEMRRARVGLD-QVALVA----------------ALSACAEIGDLKLGKWIHSYVEENFSVGR 287 (538)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 287 (538)
...+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...++...+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 83 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----- 83 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----
Confidence 34445556666666666665542 232 223333 566667777777777777777776
Q ss_pred CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHH
Q 044988 288 EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQ 364 (538)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~ 364 (538)
.|.+...+..+..+|...|++++|...|++..+ | +..+|..+...|...|.. ....+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~------------------~~~~~~~ 145 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ------------------EKKKLET 145 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH------------------HHHHHHH
Confidence 566667777777777777777777777776654 2 445555555555433311 1223344
Q ss_pred HHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 044988 365 FFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSL 417 (538)
Q Consensus 365 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 417 (538)
.++... ...|....+..+..++...|++++|...|++.. ..|+......+
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444433 223333344445556666777788887777653 56775544433
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=2.4e-07 Score=84.24 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=56.7
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC--cccHHHHHHHHHHhcCChH
Q 044988 389 FSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ--AAGYLALVANVYAAAKRWQ 464 (538)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~ 464 (538)
+...++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++ ....|++ ...+. .++.+|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~-l~~~p~~~~~~a~~-~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH-LRXDLTAADGQTRX-TFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTGGGGHHHH-HHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH-HhcccccccchHHH-HHHHHHHHcCCCC
Confidence 445555566666665542 233 4566677777777777777887777777 7777776 55566 7777778888887
Q ss_pred HHHHHHHHHH
Q 044988 465 DVAAVRQKMI 474 (538)
Q Consensus 465 ~A~~~~~~m~ 474 (538)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776643
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=5.3e-07 Score=75.26 Aligned_cols=155 Identities=10% Similarity=0.003 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA-CAE 265 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 265 (538)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33444556666666777777766653 344566666677777777777777776665432 233222221111 112
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---cchHHHHHHHHHhcCCcc
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN---TVSWTSMITGFAKQGYAQ 340 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~~~~~ 340 (538)
.+....+...++...+. .|.+...+..+...+...|++++|...|+++.+ |+ ...+..+...+...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA-----NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22233456667777765 666777777888888888888888888887765 32 346777777788888777
Q ss_pred HHHHHHHHHHH
Q 044988 341 EALLTFLGVLS 351 (538)
Q Consensus 341 ~a~~~~~~ll~ 351 (538)
+|...|...+.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77655554443
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=3e-08 Score=80.43 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=101.5
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNN 426 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 426 (538)
...+...|++++|...++..... .|+ ...+..+...|.+.|++++|++.|++.. ..| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34556678999999999988743 564 5567789999999999999999999874 444 57899999999999999
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAV-RQKMIK 475 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 475 (538)
+++|+..|+++ .++.|+++.++. .++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~a-l~~~p~~~~~~~-~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRS-VELNPTQKDLVL-KIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999 999999999888 999999999999887765 577765
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=4.6e-07 Score=93.09 Aligned_cols=180 Identities=10% Similarity=0.036 Sum_probs=109.3
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcC
Q 044988 28 QIRNTTKTLFQIHSQII--------INGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARS 96 (538)
Q Consensus 28 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 96 (538)
...+++++|...++... +. .+.+...+..+...|...|++++|+..|++.. +.+...|..+..++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55667777777777666 22 12345566666677777777777777776655 23455666666677777
Q ss_pred CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHH
Q 044988 97 ETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCAR 176 (538)
Q Consensus 97 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~ 176 (538)
|++++|+..|++..+.. +-+...|..+..++.+.|++++ ...|++.++.+ +.+...+..+..++.+.|+ .++|.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~---~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD---RVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC---HHHHH
Confidence 77777777777766542 2245566666667777777777 77777776654 4455566667777777777 77777
Q ss_pred HHhhcCCCCC---chhHHHHHHHHHhcC--------CHHHHHHHHccCC
Q 044988 177 LLFDDMPARS---VVSWNSLLKGYVKRG--------DIDGAWKIFDEMP 214 (538)
Q Consensus 177 ~~~~~~~~~~---~~~~~~li~~~~~~g--------~~~~A~~~~~~m~ 214 (538)
..|++..+.+ ...|..+..++...+ ++++|.+.+..+.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 7776666432 234444444443322 3555555555554
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=1.2e-06 Score=76.48 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchh---H
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVG-LD-QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVS---L 294 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~ 294 (538)
.+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|+++.|...++.+.+. .|.+.. .
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHHHH
Confidence 3444555566667777777777766653211 11 234555666666667777777776666665 232221 2
Q ss_pred HHHHHHHHH------------------hCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhccc
Q 044988 295 NNALIHMYA------------------SCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHG 356 (538)
Q Consensus 295 ~~~l~~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~ 356 (538)
+..+..++. ..|++++|...|+++.+.+ -..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------------------------------P~~ 129 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------------------------------PNS 129 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------------------------------TTC
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------------------------------cCC
Confidence 223333333 3456777777777666522 111
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPND----AVLGSLLLGCRIHNNAELAS 431 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~ 431 (538)
.....+......+... .......+...|.+.|++++|+..|+++. ..|+. ..+..+..++.+.|+.++|.
T Consensus 130 ~~a~~a~~~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 130 QYTTDATKRLVFLKDR-----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp TTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 1111222111111110 01122345667778888888888887763 23442 45667777888888888888
Q ss_pred HHHHHchhccCCCCcc
Q 044988 432 QVAQKLVAEIDPEQAA 447 (538)
Q Consensus 432 ~~~~~~~~~~~p~~~~ 447 (538)
+.++.+ ....|++..
T Consensus 205 ~~~~~l-~~~~~~~~~ 219 (225)
T 2yhc_A 205 KVAKII-AANSSNTLE 219 (225)
T ss_dssp HHHHHH-HHCCSCCCC
T ss_pred HHHHHH-HhhCCCchh
Confidence 888887 666666543
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=1.2e-06 Score=85.93 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=132.2
Q ss_pred HHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 044988 204 DGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVE 280 (538)
Q Consensus 204 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 280 (538)
+.+..+|++... .+...|-..+..+.+.|+.++|..+|++.... |....+.. .+....+.+. +++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHH
Confidence 345667777543 34567888888888999999999999999987 44333222 2222212222 133333
Q ss_pred HhccCC--------CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 044988 281 ENFSVG--------REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSA 352 (538)
Q Consensus 281 ~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~ 352 (538)
+..... ..+....+|...+..+.+.+..+.|..+|++...|. .++...+. + ..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~-~--------------A~lE~ 330 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIY-C--------------AFIEY 330 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHH-H--------------HHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHH-H--------------HHHHH
Confidence 221000 011223566677777777888999999999884343 23322211 0 01111
Q ss_pred hcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044988 353 CSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRIHNNAELASQ 432 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 432 (538)
. ..++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..
T Consensus 331 ~-~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 331 Y-ATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp H-HHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred H-HCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 123688999999998887432 24456667887888999999999999984 357788888888888899999999
Q ss_pred HHHHch
Q 044988 433 VAQKLV 438 (538)
Q Consensus 433 ~~~~~~ 438 (538)
+++++.
T Consensus 406 v~~~~~ 411 (493)
T 2uy1_A 406 LVDQKM 411 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888885
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=3.6e-06 Score=82.49 Aligned_cols=360 Identities=10% Similarity=0.002 Sum_probs=183.3
Q ss_pred hhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC-cHHHHHHHHHHHH
Q 044988 68 LINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL-FREGEQVHGRVLA 146 (538)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 146 (538)
++.|+.+|+... ..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 666666665543 22221 8899999999998874 5788888888888777663 4566778887776
Q ss_pred h-CC-CCchhHHhHHHHHHH----hcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHh---cCCHHHHHHHHccCCCCC
Q 044988 147 S-GY-CSNVFIRTNLMNLYL----MSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVK---RGDIDGAWKIFDEMPHRN 217 (538)
Q Consensus 147 ~-~~-~~~~~~~~~l~~~~~----~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~ 217 (538)
. |. ..+..+|...+..+. ..|+ ++.+.++|++...-....+..+-..|.. ......+..++.+
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~---~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~----- 148 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTR---IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----- 148 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHH---HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-----
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHH---HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH-----
Confidence 5 43 235567777766543 2345 7778888877654212212222222211 1111111111111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHhccCCCCCc
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEI--GD-----LKLGKWIHSYVEENFSVGREPV 290 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~ 290 (538)
. .+.+..|...++.+...--..+...+...+.--... +- .+.+..+|+.+... .|.
T Consensus 149 ----------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-----~p~ 211 (493)
T 2uy1_A 149 ----------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-----FYY 211 (493)
T ss_dssp ----------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-----TTT
T ss_pred ----------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-----CCC
Confidence 0 011122222222221100000111222211111110 00 12233344444443 333
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CCcc-hHH-------------HHHHHHHhc-------CCccHHHHHHHH
Q 044988 291 LVSLNNALIHMYASCGEIEEAYGVFRKMQR-RNTV-SWT-------------SMITGFAKQ-------GYAQEALLTFLG 348 (538)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~-~~~-------------~li~~~~~~-------~~~~~a~~~~~~ 348 (538)
...+|...+..+.+.|+.+.|..+|++... |+.. .|. .+...+... ........+|..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 444444444444444555555444443322 1111 000 011100000 001111144555
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcC-ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAG-LMDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHN 425 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 425 (538)
.+....+.++++.|+.+|+.. +..+ ++...|......-...+ +.+.|..+|+... .-|+ ...|...+....+.|
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 566665677899999999998 4312 24444443333333333 6999999998763 1233 455667777788899
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.+.|..+|+++ . .....|. ..+..-...|+.+.+.+++++..+
T Consensus 369 ~~~~aR~l~er~-~----k~~~lw~-~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRL-E----KTSRMWD-SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHS-C----CBHHHHH-HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-H----HHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999998 3 3445455 555656678999999998888763
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=9.5e-08 Score=77.18 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=92.5
Q ss_pred HHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhc
Q 044988 364 QFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAE 440 (538)
Q Consensus 364 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 440 (538)
..|+++. .+.| +...+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..++++ ..
T Consensus 8 ~~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~ 83 (148)
T 2vgx_A 8 GTIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG-AV 83 (148)
T ss_dssp CSHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH
T ss_pred hhHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH-Hh
Confidence 3455555 3456 46678889999999999999999999874 3 346788889999999999999999999999 99
Q ss_pred cCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 441 IDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 441 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
+.|+++..+. .++.+|...|++++|.+.|++..+.
T Consensus 84 l~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 84 MDIXEPRFPF-HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HSTTCTHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCchHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999888 9999999999999999999998763
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=2.2e-07 Score=72.57 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred CCcc-HHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHH
Q 044988 375 IKPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLA 451 (538)
Q Consensus 375 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~ 451 (538)
+.|+ ...+......|.+.|++++|++.|++.. .. .+...|..+..++.+.|++++|+..++++ .++.|++...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~a~~- 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC-IRLDSKFIKGYI- 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH-HHhhhhhhHHHH-
Confidence 4564 5567778888888888888888887763 33 35677778888888888888888888888 888888888777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 044988 452 LVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 452 ~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.++.+|...|++++|++.|++..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888888776
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=5.8e-07 Score=77.63 Aligned_cols=123 Identities=11% Similarity=-0.046 Sum_probs=105.3
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHN 425 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 425 (538)
.+...+...|++++|...|++.. .|+...+..+...|.+.|++++|++.|++.. .+.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 44556667789999999998764 5678899999999999999999999998874 3345788899999999999
Q ss_pred CHHHHHHHHHHchhccCCCCc----------------ccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 426 NAELASQVAQKLVAEIDPEQA----------------AGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
++++|...++++ ....|.+. ..+. .++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEA-LIQLRGNQLIDYKILGLQFKLFACEVLY-NIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHH-HHTTTTCSEEECGGGTBCCEEEHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH-HHhCCCccHHHHHHhccccCccchHHHH-HHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999 88777766 6677 89999999999999999999998743
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=3.7e-07 Score=92.06 Aligned_cols=159 Identities=9% Similarity=-0.034 Sum_probs=115.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHH
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a 342 (538)
.|++++|...++.+.+. .|.+...+..+...|...|++++|.+.|++..+. +...+..+...|...
T Consensus 2 ~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ------ 70 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT------
T ss_pred CccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------
Confidence 47889999999998886 6777888899999999999999999999988763 344555555555444
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 044988 343 LLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLL 419 (538)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 419 (538)
|++++|.+.+++..+. .| +...+..+..+|.+.|++++|.+.|++.. ..| +...+..+..
T Consensus 71 --------------g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 71 --------------QRHAEAAVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp --------------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5888889999999876 45 57899999999999999999999999874 334 5778888999
Q ss_pred HHHhc---CCHHHHHHHHHHchhccCCCCcccHHHHHH
Q 044988 420 GCRIH---NNAELASQVAQKLVAEIDPEQAAGYLALVA 454 (538)
Q Consensus 420 ~~~~~---~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~ 454 (538)
.+... |+.++|.+.++++ ....|+....+. .++
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~l~ 169 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAA-VAQGVGAVEPFA-FLS 169 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHH-HHHTCCCSCHHH-HTT
T ss_pred HHHHhhccccHHHHHHHHHHH-HhcCCcccChHH-HhC
Confidence 99999 9999999999999 999999888666 554
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=1e-06 Score=80.09 Aligned_cols=154 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHH-HH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLL-SV 127 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~ 127 (538)
...+..+...+...|++++|+..|++.. +.+...+..+...+.+.|++++|...+++.... .|+........ ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 3444444455555555555555555443 223344555555555555555555555555432 23322211111 12
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC--CC---chhHHHHHHHHHhcCC
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA--RS---VVSWNSLLKGYVKRGD 202 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~ 202 (538)
+...++.+.|...+++..... +.+...+..+..++...|+ .++|...|.+..+ |+ ...+..++..+...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 334444555555555555543 3344455555555555555 5555555555443 21 3345555555555555
Q ss_pred HHHHHHHHc
Q 044988 203 IDGAWKIFD 211 (538)
Q Consensus 203 ~~~A~~~~~ 211 (538)
.++|...|+
T Consensus 271 ~~~a~~~~r 279 (287)
T 3qou_A 271 GDALASXYR 279 (287)
T ss_dssp TCHHHHHHH
T ss_pred CCcHHHHHH
Confidence 555555544
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1e-05 Score=73.36 Aligned_cols=215 Identities=9% Similarity=0.028 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC--ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHH----Hh
Q 044988 232 GKSRQALSLFNEMRRARVGLDQVA-LVAALSACAEIG--DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMY----AS 304 (538)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 304 (538)
...++|+++++.+.. +.|+..| ++.--..+...+ +++++...++.+... .|.+..+|+.-...+ ..
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccHHHHHHHHHHHHHHHHh
Confidence 334577777777766 3454333 444444555556 777777777777775 666666666555555 44
Q ss_pred C---CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc
Q 044988 305 C---GEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR 378 (538)
Q Consensus 305 ~---g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 378 (538)
. ++++++..+++++.+ ++..+|+.-...+.+.|.++ ..++.+.++++.+.. .-|
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~------------------~~~EL~~~~~~i~~d--~~N 179 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN------------------DAKELSFVDKVIDTD--LKN 179 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT------------------CHHHHHHHHHHHHHC--TTC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC------------------hHHHHHHHHHHHHhC--CCC
Confidence 4 677777777777765 34445554444444444322 115556666666541 225
Q ss_pred HHHHHHHHHHhhhcCC------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHchhccC---CCCc
Q 044988 379 IEHYGCMVDLFSRAGL------MDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAEL-ASQVAQKLVAEID---PEQA 446 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~---p~~~ 446 (538)
...|+.-...+.+.|+ ++++++.++++. ..-|...|+.+...+.+.|+... +..+.+++ ..+. |.++
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 258 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF-VDLEKDQVTSS 258 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT-EEGGGTEESCH
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH-HhccCCCCCCH
Confidence 6666665555555555 677777776653 33456777777777777666433 44566666 4443 6666
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 447 AGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.++. .++++|.+.|+.++|.++++.+.+
T Consensus 259 ~al~-~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 259 FALE-TLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHccCCHHHHHHHHHHHHh
Confidence 6566 777888888888888888888764
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=5e-07 Score=91.13 Aligned_cols=146 Identities=13% Similarity=0.013 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHH
Q 044988 231 NGKSRQALSLFNEMRRARVGL-DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIE 309 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (538)
.|++++|...|++..+. .| +...+..+...+...|++++|...++...+. .|.+...+..+...|...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 47889999999998774 44 5778888999999999999999999999986 6777888889999999999999
Q ss_pred HHHHHHHhcCC--C-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHH
Q 044988 310 EAYGVFRKMQR--R-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCM 385 (538)
Q Consensus 310 ~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 385 (538)
+|.+.|++..+ | +...+..+...|... |++++|.+.|++..+. .| +...+..+
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~---~p~~~~~~~~l 131 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDA--------------------GQAEAAAAAYTRAHQL---LPEEPYITAQL 131 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 99999998764 2 344555555555444 5888889999998876 45 57788899
Q ss_pred HHHhhhc---CChHHHHHHHHhCC
Q 044988 386 VDLFSRA---GLMDEAFSLVQNMP 406 (538)
Q Consensus 386 ~~~~~~~---g~~~~A~~~~~~~~ 406 (538)
..++... |+.++|.+.+++..
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999 99999999998773
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=5.8e-07 Score=70.18 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=89.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGC 421 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~ 421 (538)
.+......+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++.. . +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445556667777999999999998875 45 68899999999999999999999999874 3 34578899999999
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...|++++|++.|+++ .++.|++..++. .|..+
T Consensus 92 ~~~~~~~~A~~~~~~a-l~l~P~~~~a~~-~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDA-LQVDPSNEEARE-GVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHH
T ss_pred HHCCCHHHHHHHHHHH-HHHCcCCHHHHH-HHHHh
Confidence 9999999999999999 999999988666 55543
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=4e-07 Score=82.51 Aligned_cols=184 Identities=9% Similarity=-0.040 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---CcchHHHHH
Q 044988 254 VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---NTVSWTSMI 330 (538)
Q Consensus 254 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li 330 (538)
..+..+...+.+.|+++.|...++.+.+. .|.+...+..+..+|.+.|++++|...+++..+- +...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34444555555566666666666666554 4555666666666777777777777777666542 233444444
Q ss_pred HHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc------HHHHHHHHHHhhhcCChHHHHHHHHh
Q 044988 331 TGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR------IEHYGCMVDLFSRAGLMDEAFSLVQN 404 (538)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (538)
.+|...| ++++|...|++..+. .|+ ...+..+ ...+...+.. ...
T Consensus 80 ~~~~~~g--------------------~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~ 130 (281)
T 2c2l_A 80 QCQLEME--------------------SYDEAIANLQRAYSL---AKEQRLNFGDDIPSAL--RIAKKKRWNS----IEE 130 (281)
T ss_dssp HHHHHTT--------------------CHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHH--HHHHHHHHHH----HHH
T ss_pred HHHHHcC--------------------CHHHHHHHHHHHHHh---CccchhhHHHHHHHHH--HHHHHHHHHH----HHH
Confidence 4444444 444444555444432 121 1111111 1111111111 222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 044988 405 MPMKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAA-KRWQDVAAVRQKMIK 475 (538)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 475 (538)
....++......+. .+ ..|+.++|++.++++ .+..|++..... .+...+.+. +++++|.++|.+..+
T Consensus 131 ~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 131 RRIHQESELHSYLT-RL-IAAERERELEECQRN-HEGHEDDGHIRA-QQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TCCCCCCHHHHHHH-HH-HHHHHHHHHTTTSGG-GTTTSCHHHHTH-HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHhh-hccccchhhhhh-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 23334444433332 22 368889999999998 888898876445 666666665 678899999988765
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=1e-06 Score=72.52 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLG 420 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 420 (538)
..+..+...+...|+++.|...|++..+. .| +..++..+..++...|++++|.+.+++.. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666677778999999999998875 34 57889999999999999999999998874 33457888899999
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCCcccHHHHHH--HHHHhcCChHHHHHHHHHHH
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQAAGYLALVA--NVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 474 (538)
+...|++++|...++++ ....|++...+. .+. ..+.+.|++++|++.+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETV-VKVKPHDKDAKM-KYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSTTCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999 889999887664 444 44788899999999998775
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2.8e-06 Score=73.27 Aligned_cols=130 Identities=11% Similarity=-0.080 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDL 269 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 269 (538)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556677788888888888888887888888888899999999999999999888753 34567788888888899999
Q ss_pred HHHHHHHHHHHHhccCC-----------CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 270 KLGKWIHSYVEENFSVG-----------REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 270 ~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
+.|...++.+.+..... ..+.....+..+..+|...|++++|...|++..+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998888851110 0112336777899999999999999999998776
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=2.4e-06 Score=73.64 Aligned_cols=174 Identities=14% Similarity=0.016 Sum_probs=101.9
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhh
Q 044988 101 KSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFD 180 (538)
Q Consensus 101 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~ 180 (538)
+|++.|++..+. -+...+..+...+...+++++|...|++..+.| +...+..|...|...|.....++|...|+
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 344555555543 244455555555555666666666666665544 34445555555555111111566666655
Q ss_pred cCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHccCCCC-C----hHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 044988 181 DMPAR-SVVSWNSLLKGYVK----RGDIDGAWKIFDEMPHR-N----VVSWTTMISGCAQ----NGKSRQALSLFNEMRR 246 (538)
Q Consensus 181 ~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 246 (538)
+..++ +...+..+...|.. .+++++|..+|++..+. + +.++..|...|.. .+++++|+.+|++..+
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 54433 44455555555554 66777777777776542 2 5677777777777 6778888888888777
Q ss_pred CCCCCCHHHHHHHHHHHHcc-C-----ChHHHHHHHHHHHHh
Q 044988 247 ARVGLDQVALVAALSACAEI-G-----DLKLGKWIHSYVEEN 282 (538)
Q Consensus 247 ~g~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~ 282 (538)
. ..+...+..+...|... | ++++|...++...+.
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 22333455555555432 2 778888877777776
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=8.8e-07 Score=70.87 Aligned_cols=101 Identities=14% Similarity=-0.032 Sum_probs=87.8
Q ss_pred CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 374 GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MK-PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 374 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
.+.| +...+..+...+.+.|++++|...|++.. .. .+...|..+..++...|++++|+..++++ ..+.|+++..+.
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~ 90 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG-ALMDINEPRFPF 90 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCCCcHHHH
Confidence 3456 45677788889999999999999999874 33 46788888999999999999999999999 999999999888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 451 ALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 451 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.++.+|...|++++|.+.+++..+.
T Consensus 91 -~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 -HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=4.5e-06 Score=71.97 Aligned_cols=163 Identities=12% Similarity=-0.006 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKMQRR-NTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
...+..|...|...+++++|...|++..+. ++..+..+...|.. +.. ..++++|...|++..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~----------------~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQ----------------QADYPQARQLAEKAV 80 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STT----------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC----------------CCCHHHHHHHHHHHH
Confidence 344556777777778888888887776543 33333333333332 100 016788888888876
Q ss_pred hhcCCCccHHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHch
Q 044988 371 QNWGIKPRIEHYGCMVDLFSR----AGLMDEAFSLVQNMPMKPN----DAVLGSLLLGCRI----HNNAELASQVAQKLV 438 (538)
Q Consensus 371 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 438 (538)
+. -+...+..|...|.. .+++++|.++|++.....+ ...+..|...|.. .+++++|+..|++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A- 155 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS- 155 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH-
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-
Confidence 53 256677778888877 7899999999988753333 7788888888888 78999999999999
Q ss_pred hccCCCCcccHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 044988 439 AEIDPEQAAGYLALVANVYAAA-K-----RWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 439 ~~~~p~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 478 (538)
.+. |.++..+. .|+.+|... | ++++|..++++..+.|.
T Consensus 156 ~~~-~~~~~a~~-~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEY-WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHH-HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHH-HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666 55555577 888888764 3 89999999999887654
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.7e-06 Score=73.89 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=105.8
Q ss_pred HhcCCHHHHHH---HHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCh
Q 044988 198 VKRGDIDGAWK---IFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGL-DQVALVAALSACAEIGDL 269 (538)
Q Consensus 198 ~~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~ 269 (538)
...|++++|.+ ++..-+.....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 554433344557777888888888888888888877651 2222 244566677777888888
Q ss_pred HHHHHHHHHHHHhccCCC-CC-cchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCc----chHHHHHHHHHhcCC
Q 044988 270 KLGKWIHSYVEENFSVGR-EP-VLVSLNNALIHMYASCGEIEEAYGVFRKMQR-----RNT----VSWTSMITGFAKQGY 338 (538)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~----~~~~~li~~~~~~~~ 338 (538)
+.|...+....+.....+ .+ .....+..+...+...|++++|...+++..+ .+. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 888888887766533223 22 2345567788888888999988888877642 111 223455556666666
Q ss_pred ccHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 044988 339 AQEALLTFLGVLSACSHGGFVDEGRQFFECM 369 (538)
Q Consensus 339 ~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (538)
+++|...+...+..+...|+......+...+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 193 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAELEDSEAVNELMTRL 193 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 6666655555555555555444444443333
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.7e-05 Score=72.33 Aligned_cols=165 Identities=9% Similarity=-0.007 Sum_probs=117.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC
Q 044988 297 ALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIK 376 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (538)
..+..+...|++++|...+++..+.....-..- .....+..+...+...|++++|...|++..+...-.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-----------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH-----------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHH-----------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 346778899999999999998765221110000 000223345556667778999999999988642112
Q ss_pred cc----HHHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCC
Q 044988 377 PR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP-----MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 377 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p 443 (538)
++ ..+++.+...|...|++++|...|+++. ...+ ..++..+...|.+.|++++|...++++. .+.+
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al-~~~~ 227 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI-EISC 227 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHH
Confidence 23 3478999999999999999999998764 1112 3477888889999999999999999994 4332
Q ss_pred CC------cccHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 044988 444 EQ------AAGYLALVANVYAAAKR-WQDVAAVRQKMI 474 (538)
Q Consensus 444 ~~------~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 474 (538)
.. ..++. .++.+|.+.|+ +++|.+.+++..
T Consensus 228 ~~~~~~~~~~~~~-~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 228 RINSMALIGQLYY-QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTBCTTHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHH-HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 22 44566 89999999995 699999998876
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.8e-06 Score=66.92 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=79.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCR 422 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 422 (538)
.+..+...+...|+++.|...++++.+.. +.+..++..+...+...|++++|...++++. .+.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444555556667777788888777651 2346677788888888888888888887763 2345677777788888
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhc
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAA 460 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 460 (538)
..|++++|...++++ ....|+++..+. .++.++...
T Consensus 89 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKA-LELDPNNAEAKQ-NLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH-HHhCCCcHHHHH-HHHHHHHhc
Confidence 888888888888888 777787777555 666665543
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=6.5e-07 Score=79.24 Aligned_cols=198 Identities=7% Similarity=-0.084 Sum_probs=138.5
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH-------HHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHh-c
Q 044988 265 EIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL-------IHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAK-Q 336 (538)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~-~ 336 (538)
..++...|...|..+.+. .|.....|..+ ...+.+.++..++...+.+-..-.+.+.... .. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~-----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~----~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR----IAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE----EECC
T ss_pred cCCCHHHHHHHHHHHHHh-----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh----hccC
Confidence 578889999999999887 78888888777 4556555555666656655544111111000 00 1
Q ss_pred CCc-------cHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 044988 337 GYA-------QEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKP 409 (538)
Q Consensus 337 ~~~-------~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 409 (538)
|-+ .............+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.....|
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 111 001123334445566677999999999988754 5654477777778999999999999999775444
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHchhccC--CC-CcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 410 ND----AVLGSLLLGCRIHNNAELASQVAQKLVAEID--PE-QAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 410 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--p~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
+. ..+..+..++...|++++|+..|++. .... |. ...... .++.++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a-~~g~~~P~~~~da~~-~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEA-NDSPAGEACARAIAW-YLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSTTTTTTHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH-hcCCCCccccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33 36777888899999999999999998 4332 54 333456 7888999999999999999999874
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=8.3e-07 Score=82.70 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=100.7
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----------------HHHHHHHHHHhhhcCChHHHHHHHHhCC-C-
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR----------------IEHYGCMVDLFSRAGLMDEAFSLVQNMP-M- 407 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 407 (538)
+..+...+...|++++|...|++..+. .|+ ..+|..+..+|.+.|++++|+..+++.. .
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 334444455555777777777777655 333 4789999999999999999999999874 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 044988 408 KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDV-AAVRQKMI 474 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 474 (538)
+.+...|..+..++...|++++|+..|+++ ..+.|++...+. .++.++.+.|++++| ..++++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~-~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKT-QLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999 999999999788 999999999999998 44666664
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=7.7e-06 Score=74.58 Aligned_cols=161 Identities=11% Similarity=-0.048 Sum_probs=111.8
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 044988 193 LLKGYVKRGDIDGAWKIFDEMPH-----RNV----VSWTTMISGCAQNGKSRQALSLFNEMRRARVG-LD----QVALVA 258 (538)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 258 (538)
.+..+...|++++|...+++..+ ++. ..+..+...+...+++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999887543 121 12334666677778999999999999874322 22 336888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhccCC--CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC----C-C----cchHH
Q 044988 259 ALSACAEIGDLKLGKWIHSYVEENFSVG--REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR----R-N----TVSWT 327 (538)
Q Consensus 259 li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~-~----~~~~~ 327 (538)
+...|...|+++.|...++.+.+..... ..+....++..+...|.+.|++++|...+++..+ . + ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999888643211 2233445778899999999999999999987653 1 1 34566
Q ss_pred HHHHHHHhcCC-ccHHHHHHHHHHHHh
Q 044988 328 SMITGFAKQGY-AQEALLTFLGVLSAC 353 (538)
Q Consensus 328 ~li~~~~~~~~-~~~a~~~~~~ll~~~ 353 (538)
.+...|.+.|+ .++|...|...+..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 66777777774 366664444444333
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=5.5e-06 Score=75.53 Aligned_cols=170 Identities=8% Similarity=-0.028 Sum_probs=98.6
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc------chHHHHHHHHHccCCcHHHHHHHHHHHHhCCC---Cc--h
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDE------YTYSFLLSVCARCGLFREGEQVHGRVLASGYC---SN--V 153 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 153 (538)
.+...+..+...|++++|.+.+++..+..- .+. ..+..+...+...|++++|...+++..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 444556677778888888888877766421 111 12233444556667777777777777653211 11 2
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChHHHHHHHHHHHH
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR---NVVSWTTMISGCAQ 230 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~ 230 (538)
.+++.+...|...|+ +++|...|++ |+++++..+.. ...+|..+...|..
T Consensus 156 ~~~~~lg~~y~~~~~---~~~A~~~~~k------------------------al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 156 YIENAIANIYAENGY---LKKGIDLFEQ------------------------ILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHH------------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHH------------------------HHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 355556666666666 5555555432 22222322221 12467777788888
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHH-HHHHHHHHHh
Q 044988 231 NGKSRQALSLFNEMRRA----RVGLD-QVALVAALSACAEIGDLKLG-KWIHSYVEEN 282 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~ 282 (538)
.|++++|+..+++..+. +.... ..+|..+..++.+.|+.++| ...++.....
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88888888888877642 11111 45666677777777777777 5556555443
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=6.5e-07 Score=74.79 Aligned_cols=120 Identities=8% Similarity=0.080 Sum_probs=99.0
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHH-HHhcCCH--H
Q 044988 354 SHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLG-CRIHNNA--E 428 (538)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~~~~--~ 428 (538)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++.. . +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 44578888899999888652 3367899999999999999999999999874 2 3357778888888 7789998 9
Q ss_pred HHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 429 LASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 429 ~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
+|...++++ ....|++...+. .++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~a-l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKA-LALDSNEITALM-LLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-HHhCCCcHHHHH-HHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999 899999998788 99999999999999999999998743
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=1.9e-05 Score=71.51 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=110.6
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccC--ChhHHHHHHhcCC---CCCcchHHHHHHHH----hcC---CCc
Q 044988 32 TTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSG--YLINAHKVFEKTE---NPSTAIWNQMIRGH----ARS---ETP 99 (538)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~---~~~~~~~~~li~~~----~~~---~~~ 99 (538)
..++|....+.++...+. ...+|+.--.++...| ++++++.+++.+. +.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 334566666666655422 3344555555555555 5666666665544 22333444433333 333 455
Q ss_pred hHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcH--HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHH
Q 044988 100 EKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFR--EGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARL 177 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~ 177 (538)
++++.+++.+.+.. +-|-.+|+.-.-.+.+.|.++ ++.+.++++++.. +.|...|+....+..+.+. ..
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~---~~---- 197 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH---LA---- 197 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG---GC----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc---cc----
Confidence 56666666555532 234445555444445555554 5555555555543 3333344333333222221 00
Q ss_pred HhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC---CChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCC
Q 044988 178 LFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNVVSWTTMISGCAQNGKSRQ-ALSLFNEMRRAR--VGL 251 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g--~~p 251 (538)
....++++++.+++... .|...|+-+-..+.+.|+... +..+..+..+.+ -..
T Consensus 198 ---------------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 198 ---------------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred ---------------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 00004455555544331 344556666555555555333 333444443321 123
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHH
Q 044988 252 DQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNA 297 (538)
Q Consensus 252 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (538)
+...+..+...+.+.|+.++|..+++.+.+. -.|.....|+.
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~~----~Dpir~~yW~~ 298 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKSK----YNPIRSNFWDY 298 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----cChHHHHHHHH
Confidence 4555556666666666666666666666553 35555555543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=2.7e-06 Score=66.51 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=89.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCR 422 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 422 (538)
.+..+...+...|+++.|...|++..... +.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44555566666778888888888887651 2357788888889999999999999988763 2334777888888899
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCCh
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRW 463 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 463 (538)
..|++++|...++++ ....|++...+. .++.++.+.|++
T Consensus 92 ~~~~~~~A~~~~~~~-~~~~p~~~~~~~-~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKA-LELDPDNETYKS-NLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHH-HHHSTTCHHHHH-HHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHH-HhcCccchHHHH-HHHHHHHHHhcC
Confidence 999999999999998 888888887677 888888877765
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=5.9e-06 Score=75.32 Aligned_cols=170 Identities=8% Similarity=-0.078 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPH---RNV------VSWTTMISGCAQNGKSRQALSLFNEMRRARV---GLD--QVA 255 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~ 255 (538)
+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..|++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33455566677777777777654321 111 1234455666777888999988888775321 122 447
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCc--chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-------cc
Q 044988 256 LVAALSACAEIGDLKLGKWIHSYVEENFSVGREPV--LVSLNNALIHMYASCGEIEEAYGVFRKMQR--RN-------TV 324 (538)
Q Consensus 256 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~-------~~ 324 (538)
+..+...|...|+++.|...++.+.+......... ...++..+...|...|++++|...+++..+ ++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77888888888999999888888774321111111 225777888999999999999998887653 11 34
Q ss_pred hHHHHHHHHHhcCCccHH-HHHHHHHHHHhcccCcH
Q 044988 325 SWTSMITGFAKQGYAQEA-LLTFLGVLSACSHGGFV 359 (538)
Q Consensus 325 ~~~~li~~~~~~~~~~~a-~~~~~~ll~~~~~~~~~ 359 (538)
+|..+...|...|+.++| ...|...+..+...++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~ 273 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcH
Confidence 667777777788877777 44444444444333433
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.9e-06 Score=67.21 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++ ..+.|++...+. .++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA-IEKDPNFVRAYI-RKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCcHHHHH-HHHHH
Confidence 4566777778888888888888887763 2335677888888888888888888888888 888888888777 88888
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
|...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888888775
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.9e-06 Score=66.58 Aligned_cols=110 Identities=10% Similarity=-0.016 Sum_probs=73.8
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRI 423 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 423 (538)
..+...+...|++++|...|++..+. .| +...+..+..+|...|++++|.+.+++.. ...+...+..+...+..
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33344444455666677777776643 34 56677777777777888888877777653 22346677777777777
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK 461 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 461 (538)
.|++++|.+.++++ ....|.+...+. .++.++.+.|
T Consensus 97 ~~~~~~A~~~~~~~-~~~~p~~~~~~~-~l~~~~~~~~ 132 (133)
T 2lni_A 97 MKDYTKAMDVYQKA-LDLDSSCKEAAD-GYQRCMMAQY 132 (133)
T ss_dssp TTCHHHHHHHHHHH-HHHCGGGTHHHH-HHHHHHHHHT
T ss_pred HhhHHHHHHHHHHH-HHhCCCchHHHH-HHHHHHHHhc
Confidence 78888888888877 777777766566 6666666554
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=8.2e-06 Score=65.64 Aligned_cols=83 Identities=6% Similarity=-0.045 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHH
Q 044988 254 VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMI 330 (538)
Q Consensus 254 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li 330 (538)
..+..+...+.+.|++++|...|+.+.+. .|.+...|..+..+|...|++++|...|++..+ .++..|..+.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 34555566667777777777777777776 666777777777777777777777777776653 3455666666
Q ss_pred HHHHhcCCccH
Q 044988 331 TGFAKQGYAQE 341 (538)
Q Consensus 331 ~~~~~~~~~~~ 341 (538)
.+|...|++++
T Consensus 112 ~~~~~lg~~~e 122 (151)
T 3gyz_A 112 QCQLRLKAPLK 122 (151)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHHcCCHHH
Confidence 66666653333
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=2e-06 Score=65.14 Aligned_cols=99 Identities=10% Similarity=-0.086 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCC--CcccHHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPE--QAAGYLALV 453 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~--~~~~~~~~l 453 (538)
+...+..+...+...|++++|...+++.. ...+...+..+...+...|++++|...++++ ....|+ +...+. .+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~-~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYV-INVIEDEYNKDVWA-AK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTSCCTTCHHHHH-HH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCcccchHHHHH-HH
Confidence 35567778888899999999999998763 2345778888888999999999999999999 888898 888777 89
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhCCC
Q 044988 454 ANVYAAA-KRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 454 ~~~~~~~-g~~~~A~~~~~~m~~~~~ 478 (538)
+.++.+. |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999987544
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=1.4e-06 Score=78.81 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHH
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSV 127 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 127 (538)
+...+..+...+.+.|++++|+..|++.. +.+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455566666666677777777666544 2345566666666777777777777777666532 2234566666666
Q ss_pred HHccCCcHHHHHHHHHHHHh
Q 044988 128 CARCGLFREGEQVHGRVLAS 147 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~ 147 (538)
+...|++++|...+++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777666654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=3e-05 Score=68.58 Aligned_cols=123 Identities=8% Similarity=-0.062 Sum_probs=70.4
Q ss_pred hHHHHHHHhcCCCCChhHHHHHhhcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHccCCC-CC----hHHHHHHHHHHH
Q 044988 157 TNLMNLYLMSGGECGVGCARLLFDDMPAR--SVVSWNSLLKGYVKRGDIDGAWKIFDEMPH-RN----VVSWTTMISGCA 229 (538)
Q Consensus 157 ~~l~~~~~~~g~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~----~~~~~~li~~~~ 229 (538)
..+..++...|+ +++|.++|+.+... +......+...+.+.+++++|+..|+.... ++ ...+..+..++.
T Consensus 106 LayA~~L~~~g~---y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGN---YADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 345556666666 77777777666542 112344444456666777777777765443 21 224556666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 230 QNGKSRQALSLFNEMRRARVGLD--QVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 230 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
..|++++|+..|++.......|. .........++.+.|+.++|..+|+.+...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777776653322143 223344444556666666666666666665
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=5.5e-06 Score=64.01 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 044988 52 NYILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVC 128 (538)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 128 (538)
...+..+...+...|++++|.+.|++.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3456666666667777777777766554 2344566666777777777777777777776542 33455666777777
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 044988 129 ARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYL 164 (538)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (538)
...|++++|...++++.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77777777777777776654 334444444444443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=5e-06 Score=65.79 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHH
Q 044988 377 PRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVA 454 (538)
Q Consensus 377 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~ 454 (538)
.+...+..+...+...|++++|...|++.. . +.+...|..+...+...|++++|...++++ ....|++...+. .++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHF-FLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCchhHHHHH-HHH
Confidence 457788899999999999999999998863 2 344788888889999999999999999999 889999998788 999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 044988 455 NVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
.+|...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=3.5e-06 Score=69.22 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++ ..+.|++...+. .++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA-TVVDPKYSKAWS-RLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHH
Confidence 3444445555555555555555555442 122 3444455555555555555555555555 555555555444 55555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=2.3e-06 Score=66.17 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHH
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYA 458 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 458 (538)
.+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++ ..+.|++...+. .++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~-~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA-RMLDPKDIAVHA-ALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHH
Confidence 45667778889999999999998874 344 5788888888999999999999999999 999999999888 9999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 044988 459 AAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~ 476 (538)
+.|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=2.3e-06 Score=72.96 Aligned_cols=128 Identities=12% Similarity=-0.043 Sum_probs=91.1
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCcc--------------HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCH
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKPR--------------IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPND 411 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~ 411 (538)
.+...+...|++++|...|++..+...-.|+ ..+|..+..+|.+.|++++|+..+++.. .+.+.
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 122 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 122 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence 3344445556777777777777654211221 2788889999999999999999998874 33457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVA-AVRQKMIKMG 477 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 477 (538)
..+..+..++...|++++|...|+++ ..+.|++...+. .+..++...|+.+++. ..++.|...+
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLDIRN-SYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHH-HHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888999999999999999999999 999999998777 8888888888777776 5566665443
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=4e-06 Score=71.57 Aligned_cols=163 Identities=13% Similarity=-0.003 Sum_probs=100.2
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044988 129 ARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWK 208 (538)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 208 (538)
...|++++|.++++.+.. .......++..+...+...|+ +++|...++ +|+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~------------------------~al~ 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDR---FDEARASFQ------------------------ALQQ 54 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTC---HHHHHHHHH------------------------HHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCc---HHHHHHHHH------------------------HHHH
Confidence 356777777775444432 112345566666666666666 666666543 2333
Q ss_pred HHccCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 044988 209 IFDEMPHR--NVVSWTTMISGCAQNGKSRQALSLFNEMRRA----RVGL--DQVALVAALSACAEIGDLKLGKWIHSYVE 280 (538)
Q Consensus 209 ~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 280 (538)
+++....+ ...++..+...|...|++++|...+++..+. +-.| ....+..+...+...|++++|...++...
T Consensus 55 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 55 QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333321 2346777788888888888888888877653 2122 23446677777888889998888888776
Q ss_pred HhccCCCCCc-chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 281 ENFSVGREPV-LVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 281 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
+.....+.+. ...++..+...+...|++++|...+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5422212222 23345678888889999999988887764
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=7.1e-06 Score=62.64 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++ ....|++...+. .++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT-VDLKPDWGKGYS-RKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH-HHhCcccHHHHH-HHHHH
Confidence 3445555555666666666666665542 1224555555556666666666666666666 555666655555 66666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
+...|++++|.+.+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=7.6e-06 Score=64.14 Aligned_cols=115 Identities=8% Similarity=-0.039 Sum_probs=69.1
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHH
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSV 127 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 127 (538)
+...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344556666666666666666666665432 244556666666667777777777777766542 2344566666666
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 044988 128 CARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSG 167 (538)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (538)
+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777766653 233445555555554433
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.0002 Score=65.61 Aligned_cols=232 Identities=9% Similarity=-0.008 Sum_probs=152.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRARVGLDQV-ALVAALSACAEIG-DLKLGKWIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
++.+-....+.+..++|+++++.+.. +.|+.. .++.--..+...| .++++..+++.+.+. .|.+..+|+.-
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny~aW~hR 129 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcHHHHHHH
Confidence 33333344445566789999998887 355443 4555555555667 588999999998886 88888889888
Q ss_pred HHHHHhC-C-CHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 299 IHMYASC-G-EIEEAYGVFRKMQRRNT---VSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 299 ~~~~~~~-g-~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
..++.+. + +++++.++++++.+.++ .+|+.-...+.+.|..+.+ ....+.++.+.++++.+..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~------------~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI------------SEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc------------chhhHHHHHHHHHHHHHhC
Confidence 7777776 7 88999999999987544 4444433333333322200 0012347788888888761
Q ss_pred CCCccHHHHHHHHHHhhhcCC-------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-----------------
Q 044988 374 GIKPRIEHYGCMVDLFSRAGL-------MDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNA----------------- 427 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~----------------- 427 (538)
.-|...|+.....+.+.++ ++++++.++++. ..-|...|+.+-..+.+.|+.
T Consensus 198 --p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 198 --GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp --TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred --CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 3378888888888888776 688888887763 344577888777777766653
Q ss_pred ---HHHHHHHHHchhccC------CCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 428 ---ELASQVAQKLVAEID------PEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 428 ---~~A~~~~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.........+ .... +..+.+.. .|+++|...|+.++|.++++.+.+
T Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~~~~~s~~al~-~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 276 PDIETVEAFGFPM-PSDPLPEDTPLPVPLALE-YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ----------CCC-CC-CCCSSCCSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHH-HhcccccccCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2333333333 2221 34445455 899999999999999999999874
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=2.3e-05 Score=61.02 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+....+. .|.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 86 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCHHHHHHH
Confidence 355566666667777777777777666532 224556666666666777777777777776665 45555666667
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 044988 299 IHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGY 338 (538)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 338 (538)
...+...|++++|...|++..+ .+...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777777777777777766543 244455555555555543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=2.2e-05 Score=59.85 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=87.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGC 421 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 421 (538)
.+..+...+...|++++|...|+..... .| +...+..+...+...|++++|...+++.. ..| +...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445556666777999999999998875 34 67888999999999999999999998874 334 578888899999
Q ss_pred HhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH
Q 044988 422 RIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV 456 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~ 456 (538)
...|++++|.+.+++. ....|+++..+. .+..+
T Consensus 83 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG-LKHEANNPQLKE-GLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHH-HTTCTTCHHHHH-HHHHH
T ss_pred HHHhhHHHHHHHHHHH-HHcCCCCHHHHH-HHHHh
Confidence 9999999999999999 899999887555 55443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=5e-06 Score=64.88 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc-------cH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA-------GY 449 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~-------~~ 449 (538)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|++.++++ .++.|+... +|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA-VEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH-HHhCcccchhhHHHHHHH
Confidence 3456677778888888888888887763 333 4667777788888888888888888888 666666543 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 450 LALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 450 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
. .++.++...|++++|++.|++...
T Consensus 87 ~-~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 S-RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 567777788888888888887665
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1e-05 Score=64.55 Aligned_cols=97 Identities=10% Similarity=-0.027 Sum_probs=80.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 044988 348 GVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIH 424 (538)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 424 (538)
.+...+...|++++|...|+..... .| +...|..+..+|...|++++|+..|++.. ..| +...+..+..++...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3444555667888999999998875 45 67889999999999999999999999874 333 467788888999999
Q ss_pred CCHHHHHHHHHHchhccCCCCccc
Q 044988 425 NNAELASQVAQKLVAEIDPEQAAG 448 (538)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~p~~~~~ 448 (538)
|++++|...|+++ ....|+++..
T Consensus 100 g~~~~A~~~~~~a-l~~~p~~~~~ 122 (142)
T 2xcb_A 100 GDLDGAESGFYSA-RALAAAQPAH 122 (142)
T ss_dssp TCHHHHHHHHHHH-HHHHHTCGGG
T ss_pred CCHHHHHHHHHHH-HHhCCCCcch
Confidence 9999999999999 8888988873
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-05 Score=63.77 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNM-PMKPN----DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLAL 452 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~ 452 (538)
+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++ ....|++...+. .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA-IEKDGGDVKALY-R 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSCCHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH-HhhCccCHHHHH-H
Confidence 4667777888888888888888888776 34566 567777777788888888888888888 777888877677 8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 044988 453 VANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 453 l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
++.+|...|++++|...+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888888888888888887753
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.19 E-value=2e-05 Score=63.27 Aligned_cols=98 Identities=8% Similarity=-0.060 Sum_probs=81.5
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044988 346 FLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCR 422 (538)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 422 (538)
+..+...+...|++++|...|+..... .| +...|..+..+|...|++++|++.|++.. ..| +...+..+..++.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445555666888889999998865 45 68889999999999999999999999874 334 5678888999999
Q ss_pred hcCCHHHHHHHHHHchhccCCCCcc
Q 044988 423 IHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
..|++++|...|+++ ..+.|+++.
T Consensus 101 ~~g~~~~A~~~~~~a-l~~~p~~~~ 124 (148)
T 2vgx_A 101 QXGELAEAESGLFLA-QELIANXPE 124 (148)
T ss_dssp HTTCHHHHHHHHHHH-HHHHTTCGG
T ss_pred HcCCHHHHHHHHHHH-HHHCcCCCc
Confidence 999999999999999 888898877
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=3.2e-05 Score=63.28 Aligned_cols=92 Identities=7% Similarity=-0.052 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALI 299 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (538)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+....+. .|.+...+..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a 88 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHH
Confidence 34444455555555555555555554431 123444444444444444444444444444443 233333444444
Q ss_pred HHHHhCCCHHHHHHHHHh
Q 044988 300 HMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~ 317 (538)
.++...|++++|...|++
T Consensus 89 ~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 89 ASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHH
Confidence 444444444444444443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.9e-05 Score=61.36 Aligned_cols=107 Identities=8% Similarity=-0.113 Sum_probs=86.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGC 421 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 421 (538)
.+......+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445556667778999999999998876 45 58899999999999999999999999874 334 477888999999
Q ss_pred HhcCCHHHHHHHHHHchhccC------CCCcccHHHHHHHH
Q 044988 422 RIHNNAELASQVAQKLVAEID------PEQAAGYLALVANV 456 (538)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~------p~~~~~~~~~l~~~ 456 (538)
...|++++|...++++ ..+. |++..... .+..+
T Consensus 83 ~~~~~~~~A~~~~~~a-l~~~p~~~~~p~~~~~~~-~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQ-LYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHH-HHHHH
T ss_pred HHHhCHHHHHHHHHHH-HHhCcccCCchhHHHHHH-HHHHH
Confidence 9999999999999999 7777 77766444 44443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=2.9e-05 Score=60.50 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=67.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-CcchHHHHHH
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR--R-NTVSWTSMIT 331 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~ 331 (538)
.+..+...+.+.|++++|...|+...+. .|.+..+|..+..+|...|++++|.+.|++..+ | +...+..+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3445555666667777777777766665 566777777888888888888888888877654 1 2222222222
Q ss_pred HHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHH
Q 044988 332 GFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGC 384 (538)
Q Consensus 332 ~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 384 (538)
+ |..+..++...|++++|.+.|++..+. .||..+...
T Consensus 85 ~-------------~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 85 A-------------MSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp H-------------HHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred H-------------HHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 2 333334555566777888888877654 455544433
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.8e-05 Score=62.17 Aligned_cols=108 Identities=7% Similarity=-0.128 Sum_probs=86.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----HHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLL 418 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 418 (538)
.+..+...+...|+++.|...|++..+. .|+ ...+..+..+|...|++++|.+.+++.. ..| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3444455566667888999999998854 565 6788899999999999999999998863 334 577888889
Q ss_pred HHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHH
Q 044988 419 LGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVY 457 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~ 457 (538)
.++...|++++|...++++ ....|++...+. .+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRC-VSLEPKNKVFQE-ALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHH-HHHCSSCHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHcCCCcHHHHH-HHHHHH
Confidence 9999999999999999999 899999887555 555543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=2.8e-05 Score=63.72 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLG 420 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 420 (538)
..+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++.. ..| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555666667777999999999998876 45 68899999999999999999999999874 334 47889999999
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
+...|++++|...|+++ ..+.|++...+.
T Consensus 89 ~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~ 117 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG-IEAEGNGGSDAM 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHHSSSCCHHH
T ss_pred HHHccCHHHHHHHHHHH-HHhCCCchHHHH
Confidence 99999999999999999 999999988554
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.0001 Score=71.17 Aligned_cols=168 Identities=9% Similarity=-0.082 Sum_probs=113.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc-
Q 044988 295 NNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW- 373 (538)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 373 (538)
+..++..|...|++++|.+.+..+.+. ....++...+..+...+-..+...|+.+.|..++.......
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEY-----------MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHH-----------HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----------HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999876431 11111111111223333344455677788877777654321
Q ss_pred --CCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHch--hc
Q 044988 374 --GIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-------MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLV--AE 440 (538)
Q Consensus 374 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 440 (538)
+..+ -..++..|...|...|++++|..+++++. .+|. ..++..++..|...|++++|..++++.. ..
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 127 REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 2233 35678889999999999999999998763 1222 4577888889999999999999999985 11
Q ss_pred cCCCC----cccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 441 IDPEQ----AAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 441 ~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
..++. ...+. .++..+...|++++|...+.+..
T Consensus 207 ~~~~~~~~~~~~~~-~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 207 SIYCPTQTVAELDL-MSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HSCCCHHHHHHHHH-HHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 12222 12234 67777888999999998887765
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=1.5e-05 Score=77.69 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=93.6
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-------------cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCH
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQNWGIKP-------------RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPND 411 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~ 411 (538)
......+.+.|+++.|...|++..+...-.+ ...+|..+..+|.+.|++++|+..+++.. . ..+.
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 351 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence 3334444455566666666666665411111 15788999999999999999999999874 3 3457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHH-HHHHHHh
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAA-VRQKMIK 475 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 475 (538)
..|..+..++...|++++|+..|+++ ..+.|++..++. .++.++.+.|++++|.+ .+++|..
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~-~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARL-QISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HTTC----CHHH-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999 999999999888 99999999999988774 5566654
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=8.7e-06 Score=79.64 Aligned_cols=116 Identities=9% Similarity=0.014 Sum_probs=96.2
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAE 428 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 428 (538)
.+...|++++|.+.|++..+. .| +..+|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455678999999999999876 45 58899999999999999999999998874 344 4788899999999999999
Q ss_pred HHHHHHHHchhccCCCCcccHHHHHHHH--HHhcCChHHHHHHHHH
Q 044988 429 LASQVAQKLVAEIDPEQAAGYLALVANV--YAAAKRWQDVAAVRQK 472 (538)
Q Consensus 429 ~A~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 472 (538)
+|++.++++ .+..|++...+. .++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETV-VKVKPHDKDAKM-KYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHH-HHHSTTCTTHHH-HHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHHHHHHHHHHhccccc
Confidence 999999999 899999988777 77777 8889999999999884
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=1.4e-05 Score=74.35 Aligned_cols=127 Identities=11% Similarity=-0.077 Sum_probs=71.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH------------------HHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 345 TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI------------------EHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 345 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
.+..+...+...|++++|...|++.... .|+. ..|..+..+|.+.|++++|+..+++..
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666777777777777776654 4443 278888999999999999999998873
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHH-HHhcCChHHHHHHHHHHHhC
Q 044988 407 -MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANV-YAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 407 -~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~ 476 (538)
..| +...|..+..++...|++++|+..|+++ ..+.|++...+. .|..+ ....+..+++..+|++|...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-l~l~p~~~~a~~-~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKA-QKYAPDDKAIRR-ELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT-TC-------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 334 5788888999999999999999999999 889999888676 66666 33456677888888888754
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=2.5e-05 Score=63.46 Aligned_cols=130 Identities=12% Similarity=-0.017 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc----HHHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----H
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP----MKPN----D 411 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 411 (538)
.++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++.. ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 44555566666677777888887776643110111 2478889999999999999999998763 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhccCC------CCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 412 AVLGSLLLGCRIHNNAELASQVAQKLVAEIDP------EQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
..+..+...+...|++++|...+++.. ...+ .....+. .++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGEGRACW-SLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHccchHhHHHHHH-HHHHHHHHccCHHHHHHHHHHHHH
Confidence 567777888999999999999999984 3221 1223455 788999999999999999998764
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=4.6e-05 Score=70.83 Aligned_cols=120 Identities=10% Similarity=-0.070 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhc
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--------------QVALVAALSACAEIGDLKLGKWIHSYVEENF 283 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 283 (538)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++.+.+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34566666777777777777777777766422211 366777777777777777777777777776
Q ss_pred cCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHH
Q 044988 284 SVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a 342 (538)
.|.+...+..+..+|...|++++|...|++..+ .+...+..+...+...|+.++|
T Consensus 226 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 ----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777888877777776654 2445566666666666655544
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.08 E-value=1.8e-05 Score=65.84 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=84.5
Q ss_pred hcCCHHHHHHHHccCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCh--HHH
Q 044988 199 KRGDIDGAWKIFDEMP---HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSA-CAEIGDL--KLG 272 (538)
Q Consensus 199 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~--~~a 272 (538)
..|++++|...|++.. ..+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +.|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3566666666666543 2355678888888888899999999888887643 2355666677777 6678887 888
Q ss_pred HHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 273 KWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
...++.+.+. .|.+...+..+...|...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888886 566677777888888889999999988887654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=1.7e-05 Score=61.78 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC-------cccH
Q 044988 379 IEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ-------AAGY 449 (538)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~-------~~~~ 449 (538)
...+..+...+...|++++|...|++.. .+.+...+..+...+...|++++|...++++ ....|++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA-IEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHH-HhhccccchhHHHHHHHH
Confidence 4567778888888899999998888763 2345777888888899999999999999998 6666655 5556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 450 LALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 450 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
. .++.+|.+.|++++|.+.+++..+.
T Consensus 83 ~-~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 A-RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7 8889999999999999999998863
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=1.6e-05 Score=62.01 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC---cccHHHHHHHH
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMP-MKPND----AVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ---AAGYLALVANV 456 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~---~~~~~~~l~~~ 456 (538)
+...+...|++++|.+.|+.+. ..|+. ..+..+..++...|++++|...++++ ....|++ +..+. .++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~-~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL-VSRYPTHDKAAGGLL-KLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTSTTHHHHHH-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHCCCCcccHHHHH-HHHHH
Confidence 4445555666666666665542 12221 34555556666666666666666666 6666666 44455 66666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 044988 457 YAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~ 475 (538)
|.+.|++++|...++++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777776666654
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=2e-05 Score=62.85 Aligned_cols=92 Identities=13% Similarity=-0.015 Sum_probs=68.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHchhcc------
Q 044988 382 YGCMVDLFSRAGLMDEAFSLVQNMP-MKPN-------------DAVLGSLLLGCRIHNNAELASQVAQKLVAEI------ 441 (538)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 441 (538)
+......+.+.|++++|++.|++.. ..|+ ...|..+..++.+.|++++|+..+++. .++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA-L~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA-LHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhcccc
Confidence 3444455555666666666665542 2222 237777778888888888888888888 777
Q ss_pred -CCCCcccH----HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 442 -DPEQAAGY----LALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 442 -~p~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.|++...| . ..+.++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~-~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVY-SRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH-hHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 8 889999999999999999999875
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.00024 Score=65.13 Aligned_cols=80 Identities=8% Similarity=0.115 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccC-ChhHHHHHHhcCCC---CCcchHHHHHHHHhcC-C-CchHHHH
Q 044988 31 NTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSG-YLINAHKVFEKTEN---PSTAIWNQMIRGHARS-E-TPEKSVY 104 (538)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~a~~ 104 (538)
+..++|..+.+.++..... +..+|+.--.++...| .+++++.+++.+.. .+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3344555555555554322 3334444444444444 35555555554432 2333344433333332 3 4555555
Q ss_pred HHHHhHh
Q 044988 105 LYKQMID 111 (538)
Q Consensus 105 ~~~~m~~ 111 (538)
+++.+.+
T Consensus 147 ~~~k~L~ 153 (349)
T 3q7a_A 147 YIHGSLL 153 (349)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 5555554
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=4.9e-05 Score=62.11 Aligned_cols=93 Identities=6% Similarity=-0.024 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-C------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhc
Q 044988 381 HYGCMVDLFSRAGLMDEAFSLVQNMP-M------------------KPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAE 440 (538)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 440 (538)
.+......+.+.|++++|+..|++.. . .|. ...|..+..++.+.|++++|+..++++ ..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a-l~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV-LK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-Hh
Confidence 44445555555555555555554432 1 111 346666777777888888888888888 77
Q ss_pred cCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 441 IDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 441 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.|++..+|. .++.+|...|++++|...|++...
T Consensus 92 ~~p~~~~a~~-~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REETNEKALF-RRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcchHHHH-HHHHHHHHHhcHHHHHHHHHHHHh
Confidence 7888877777 788888888888888888877765
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.00 E-value=3.3e-05 Score=59.52 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=73.9
Q ss_pred HHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 044988 350 LSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNN 426 (538)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 426 (538)
...+...|++++|...|++..+. .| +...|..+..++...|++++|+..|++.. ..| +...+..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34445566888999999999876 56 58889999999999999999999999874 445 47788889999999999
Q ss_pred HHHHHHHHHHchhccCCCCc
Q 044988 427 AELASQVAQKLVAEIDPEQA 446 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~ 446 (538)
+++|+..++++ ....|++.
T Consensus 101 ~~~A~~~~~~a-l~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAW-LLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHH-HC------
T ss_pred HHHHHHHHHHH-HHhCcCCC
Confidence 99999999999 88888764
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00039 Score=67.09 Aligned_cols=172 Identities=5% Similarity=-0.082 Sum_probs=80.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhccCCCCC-cchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 044988 256 LVAALSACAEIGDLKLGKWIHSYVEENFSVGREP-VLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFA 334 (538)
Q Consensus 256 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 334 (538)
+..+...|...|++++|...+..+.+....-+.. ....+.+.+...+...|+.+.|..+++.... ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~ 126 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-----------FAK 126 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HHH
Confidence 4455555666666666666555554432110000 0111223333344455666776666655421 011
Q ss_pred hcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcC---CCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC----
Q 044988 335 KQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWG---IKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP---- 406 (538)
Q Consensus 335 ~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 406 (538)
..++...-..++..+...+...|++++|..+++.+..... -.| ...++..++..|...|++++|..++++..
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 127 REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 1111111112233333333444455555555554433211 112 24466667777777777777777766542
Q ss_pred -C-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 407 -M-KPN---DAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 407 -~-~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
. .|. ...+..+...+...+++++|...+.+..
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 111 2344444555666677777766666553
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=1.3e-05 Score=68.23 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHccCCC---CCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 188 VSWNSLLKGYVKRGDIDGAWKIFDEMPH---RNV----------------VSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
..+..+...+...|++++|...|++... .+. ..|..+..+|...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555666666777777766665431 111 566667777777777777777777776642
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHH
Q 044988 249 VGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAY 312 (538)
Q Consensus 249 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 312 (538)
+.+...+..+..++...|+++.|...++...+. .|.+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 234566667777777777777777777777776 5556666666666666655555544
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=7e-05 Score=58.25 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=79.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhhcCCCcc-H---HHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044988 349 VLSACSHGGFVDEGRQFFECMNQNWGIKPR-I---EHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLL 419 (538)
Q Consensus 349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 419 (538)
+...+...|++++|...|+.+.+. .|+ . ..+..+..++...|++++|...|++.. ..|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 345556677999999999998876 343 3 578889999999999999999998874 3344 567788888
Q ss_pred HHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 420 GCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
++...|++++|...++++ ....|+++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~ 114 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQV-ATQYPGSDAARV 114 (129)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-HHHCCCChHHHH
Confidence 999999999999999999 888898876333
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=0.0002 Score=56.28 Aligned_cols=99 Identities=9% Similarity=-0.085 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHH
Q 044988 216 RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLN 295 (538)
Q Consensus 216 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 295 (538)
.+...|..+...+...|++++|...|++..... +.+...+..+..++...|+++.|...++.+.+. .|.+...+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHH
Confidence 355667777777888888888888888777643 234666777777777888888888888877776 56666777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
..+..+|...|++++|...|++..+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7788888888888888888777653
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=7.9e-05 Score=57.86 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc-------
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL------- 291 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 291 (538)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+..+.+. .|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-----GRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----ccccchhHHHH
Confidence 345566666667777777777777766542 234555666666666777777777777766665 1221
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 292 VSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
..++..+...|...|++++|.+.|++..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45556667777777777777777766543
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.93 E-value=4.9e-05 Score=57.21 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCC--CcchHHHHHHHH
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEP--DEYTYSFLLSVC 128 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~ 128 (538)
.+..+...+...|++++|...|++.. +.+...|..+...+...|++++|+..|++..+.. +. +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 33334444444444444444444332 1223334444444444455555555554444431 11 233444444444
Q ss_pred Hcc-CCcHHHHHHHHHHHHh
Q 044988 129 ARC-GLFREGEQVHGRVLAS 147 (538)
Q Consensus 129 ~~~-~~~~~a~~~~~~~~~~ 147 (538)
... |++++|.+.++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 445 5555555555444443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=7.8e-06 Score=62.70 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHHhhhhcCC-Cc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGI-KP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELAS 431 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~ 431 (538)
.|++++|...|++..+. +. .| +...+..+..+|...|++++|++.|++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666543 10 13 24556666666666666666666666552 222 3455555666666666666666
Q ss_pred HHHHHchhccCCCCcc
Q 044988 432 QVAQKLVAEIDPEQAA 447 (538)
Q Consensus 432 ~~~~~~~~~~~p~~~~ 447 (538)
..+++. ....|+++.
T Consensus 82 ~~~~~a-l~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKI-IAETSDDET 96 (117)
T ss_dssp HHHHHH-HHHHCCCHH
T ss_pred HHHHHH-HHhCCCcHH
Confidence 666666 555555544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=0.00017 Score=58.39 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCC-Ccchh
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVG-LD----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGRE-PVLVS 293 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 293 (538)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|+++.|...++...+.....+. +....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4566667777777777777777776542100 11 124555555566666666666666665554211111 11233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 294 LNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.+..+...+...|++++|...+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455666666666666666666554
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=5.2e-05 Score=71.33 Aligned_cols=90 Identities=17% Similarity=0.027 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
+..+|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++ ..+.|++...+. .+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-l~l~P~~~~~~~-~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQA-ELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHH-HHHH
Confidence 46789999999999999999999998873 445 4788889999999999999999999999 999999988677 8888
Q ss_pred HHHhcCChHHHHHH
Q 044988 456 VYAAAKRWQDVAAV 469 (538)
Q Consensus 456 ~~~~~g~~~~A~~~ 469 (538)
++.+.++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776543
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.0025 Score=58.05 Aligned_cols=179 Identities=11% Similarity=0.005 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH
Q 044988 269 LKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCG--EIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
++.+..+++.+... .|.+..+|+.-..++...| .++++..+++++.+ +|..+|+.-...+...|..
T Consensus 90 l~~EL~~~~~~L~~-----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~---- 160 (331)
T 3dss_A 90 VKAELGFLESCLRV-----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---- 160 (331)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC----
Confidence 45666677777665 6777777777777777777 37777777777765 3444444444444443321
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhc--------------CChHHHHHHHHhCC--C
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRA--------------GLMDEAFSLVQNMP--M 407 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~ 407 (538)
++++.+.+..+.+.. +-|...|+.....+.+. +.++++++.+++.. .
T Consensus 161 ---------------~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 161 ---------------PAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp ---------------HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred ---------------HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 355666667666551 22566666555554443 34667777776653 2
Q ss_pred CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHchhccCCCCcccHHHHHHH---HHHhcCChHHHHHHHHHH
Q 044988 408 KPNDAVLGSLLLGCRIH-----------NNAELASQVAQKLVAEIDPEQAAGYLALVAN---VYAAAKRWQDVAAVRQKM 473 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m 473 (538)
+-|...|+-+-..+.+. +.++++++.++++ .+..|++.-.+. .++. .....|..+++...+.++
T Consensus 224 P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el-le~~pd~~w~l~-~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 224 PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL-QELEPENKWCLL-TIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH-HhhCcccchHHH-HHHHHHHhhcccccHHHHHHHHHHH
Confidence 33466666554444444 4578888888888 888898744332 2211 122457778888888888
Q ss_pred Hh
Q 044988 474 IK 475 (538)
Q Consensus 474 ~~ 475 (538)
.+
T Consensus 302 ~~ 303 (331)
T 3dss_A 302 KA 303 (331)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00011 Score=71.43 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=95.0
Q ss_pred hcccCcHHHHHHHHHHhhhhc----CC-Ccc-HHHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHH
Q 044988 353 CSHGGFVDEGRQFFECMNQNW----GI-KPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP---------MKPN-DAVLGS 416 (538)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 416 (538)
+...|++++|+.++++..+.. |- .|+ ..+++.|..+|...|++++|..++++.. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445567777777776655431 21 233 5689999999999999999999998763 3344 468889
Q ss_pred HHHHHHhcCCHHHHHHHHHHch----hccCCCCcccHH--HHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 417 LLLGCRIHNNAELASQVAQKLV----AEIDPEQAAGYL--ALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~----~~~~p~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
|...|...|++++|+.+++++. .-+.|+++.+-. ..+..++...|++++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 445677665322 36778888999999999999999864
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=1.7e-05 Score=60.68 Aligned_cols=84 Identities=17% Similarity=0.059 Sum_probs=69.3
Q ss_pred hcCChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHH
Q 044988 391 RAGLMDEAFSLVQNMP-M---KPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQD 465 (538)
Q Consensus 391 ~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 465 (538)
..|++++|+..|++.. . .|+ ...+..+...+...|++++|+..++++ ....|+++..+. .++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~-~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG-VKQFPNHQALRV-FYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCchHHHH-HHHHHHHHcCCHHH
Confidence 4678889999998874 3 244 567788888999999999999999999 999999999888 99999999999999
Q ss_pred HHHHHHHHHhC
Q 044988 466 VAAVRQKMIKM 476 (538)
Q Consensus 466 A~~~~~~m~~~ 476 (538)
|+..+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.7e-06 Score=61.83 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC------ccc
Q 044988 377 PRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ------AAG 448 (538)
Q Consensus 377 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~------~~~ 448 (538)
++...+..+...+...|++++|.+.|++.. . +.+...|..+..++...|++++|+..++++ ..+.|++ ...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG-LRYTSTAEHVAIRSKL 80 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSCSSTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCccHHHHHHHH
Confidence 356677888889999999999999998873 2 345778888888999999999999999999 8899988 554
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 044988 449 YLALVANVYAAAKRWQDVAAVRQK 472 (538)
Q Consensus 449 ~~~~l~~~~~~~g~~~~A~~~~~~ 472 (538)
+. .++.++...|++++|+..+++
T Consensus 81 ~~-~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QY-RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HH-HHHHHHHHHHCCCCCSSSSSS
T ss_pred HH-HHHHHHHHHHhHhhhHhHHHH
Confidence 55 667777777776666555443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=7e-05 Score=61.15 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKP-NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...|+++ ..+.|++..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~p~~~~ 132 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAAS 132 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCGGGHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcCCCCHH
Confidence 35688999999999999999999998874 334 5788999999999999999999999999 999999883
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00023 Score=69.15 Aligned_cols=121 Identities=12% Similarity=-0.076 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhc
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLD--------------QVALVAALSACAEIGDLKLGKWIHSYVEENF 283 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 283 (538)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|+++.|...++.+.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34677788888899999999999998877421111 477888888889999999999999999887
Q ss_pred cCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHH
Q 044988 284 SVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEAL 343 (538)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 343 (538)
.|.+...+..+..+|...|++++|...|++..+ .+...+..+...+.+.++.+++.
T Consensus 347 ----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 ----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888899999999999999999998765 24566777777777666555443
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.74 E-value=0.0036 Score=57.03 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC-HHH
Q 044988 234 SRQALSLFNEMRRARVGLDQVALVAALSACAEIG--DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE-IEE 310 (538)
Q Consensus 234 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 310 (538)
+++++.+++.+.... +-+..++..-.-.+.+.+ .++.+..+++.+.+. .|.+..+|+.-..++...|. +++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCcCHHH
Confidence 567777777777642 235555655555555555 477888888888876 77788888777777777777 578
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHH
Q 044988 311 AYGVFRKMQR---RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMV 386 (538)
Q Consensus 311 a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 386 (538)
+.+.++++.+ .|..+|+.....+...+....+- ...-...+.++++.+.+...... .| |...|+-+-
T Consensus 164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~------~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r 234 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG------PQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHR 234 (331)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc------cccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 8888877765 35556666555554432111000 00000113577888888888865 56 577777665
Q ss_pred HHhhhc-----------CChHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHchhccCCCCcccH
Q 044988 387 DLFSRA-----------GLMDEAFSLVQNMP-MKPNDAVLGSLLLG-----CRIHNNAELASQVAQKLVAEIDPEQAAGY 449 (538)
Q Consensus 387 ~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~~p~~~~~~ 449 (538)
..+.+. +.++++++.++++. ..||. .|..+..+ ....+..++....+.++ .+++|....-|
T Consensus 235 ~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~Dp~r~~~y 312 (331)
T 3dss_A 235 WLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMRAAYL 312 (331)
T ss_dssp HHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH-HHHCGGGHHHH
T ss_pred HHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHH-HHhCcchhhHH
Confidence 555544 45778888887773 55764 34322222 22467788999999999 99999998866
Q ss_pred HHHHH
Q 044988 450 LALVA 454 (538)
Q Consensus 450 ~~~l~ 454 (538)
. -+.
T Consensus 313 ~-d~~ 316 (331)
T 3dss_A 313 D-DLR 316 (331)
T ss_dssp H-HHH
T ss_pred H-HHH
Confidence 6 443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=0.00011 Score=58.65 Aligned_cols=100 Identities=13% Similarity=-0.017 Sum_probs=79.6
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc-------------HHHHHHHHHHhhhcCChHHHHHHHHhCC-C-----
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQNWGIKPR-------------IEHYGCMVDLFSRAGLMDEAFSLVQNMP-M----- 407 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----- 407 (538)
......+...|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34445555667777888888877754 333 3389999999999999999999988763 4
Q ss_pred --CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 408 --KPN-DAVL----GSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 408 --~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
.|+ ...| .....++...|++++|+..|++. .++.|++.....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA-lel~p~d~~~~~ 140 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV-VEMIEERKGETP 140 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHCCSCCT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH-HhcCCCcHHHHH
Confidence 777 4677 88899999999999999999999 999999887544
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.00017 Score=53.13 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 410 NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+...+..+...+...|++++|+..|+++ .+..|+++..|. .++.+|.+.|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~-~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL-VETDPDYVGTYY-HLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCTHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677888888889999999999999999 888899888788 899999999999999999988775
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.65 E-value=0.0019 Score=64.26 Aligned_cols=169 Identities=9% Similarity=0.002 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC----------HHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 044988 269 LKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE----------IEEAYGVFRKMQRR---NTVSWTSMITGFAK 335 (538)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~---~~~~~~~li~~~~~ 335 (538)
.++|...++.+.+. .|.+..+|+.--.++...|+ ++++.+.++++.+. +..+|+.-...+.+
T Consensus 45 ~eeal~~~~~~l~~-----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGA-----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH-----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667778888776 77788888777777777776 89999999988763 44455554444444
Q ss_pred cCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcC-ChHHHHHHHHhCC-CC-CCH
Q 044988 336 QGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAG-LMDEAFSLVQNMP-MK-PND 411 (538)
Q Consensus 336 ~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~-p~~ 411 (538)
.++. +++++.+.++++.+. .| |..+|+.-..++.+.| .++++++.++++. .. -|.
T Consensus 120 l~~~------------------~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 120 LPEP------------------NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp CSSC------------------CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred cccc------------------cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 4311 567888999998876 44 6888888888888888 8999999999885 33 457
Q ss_pred HHHHHHHHHHHhc--------------CCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHH
Q 044988 412 AVLGSLLLGCRIH--------------NNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQD 465 (538)
Q Consensus 412 ~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 465 (538)
..|+.....+.+. +.++++++.++++ ....|++..+|. .+..++.+.++.++
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a-i~~~P~~~saW~-y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA-FFTDPNDQSAWF-YHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH-HHHCSSCSHHHH-HHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH-HhhCCCCccHHH-HHHHHHhcCCCccc
Confidence 7888777776553 5679999999999 999999999999 89899988888554
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.00028 Score=50.64 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHH
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-M-KPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVAN 455 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~ 455 (538)
+...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|...++++ ....|++...+. .++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~-~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPNNAEAKQ-NLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCCCHHHHH-HHHH
Confidence 35677788888888899999998888763 2 335677888888888999999999999998 888888887676 7777
Q ss_pred HHHhcC
Q 044988 456 VYAAAK 461 (538)
Q Consensus 456 ~~~~~g 461 (538)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 766543
No 195
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.59 E-value=4.4e-06 Score=77.67 Aligned_cols=360 Identities=11% Similarity=0.051 Sum_probs=195.2
Q ss_pred ChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHc
Q 044988 51 KNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCAR 130 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 130 (538)
.+.+|+.|..++...+++.+|++-| ++..|+..|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 4567777888887777777777755 33456667777888888888888888877766654 2344444577777888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC------------------------CC
Q 044988 131 CGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA------------------------RS 186 (538)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~------------------------~~ 186 (538)
.++..+.++++ -.||..-...+..-|...|. ++.|.-+|..+.. .+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~l---YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKM---YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCC---STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccC---HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77766544432 13565556666677777777 7777666655442 25
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 187 VVSWNSLLKGYVKRGDIDGAWKIFDEM-PHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
+.+|..+-.+|...+.+.-|.-.--.+ ..+| -...++..|-..|.+++-+.+++.-... -......|+-|.-.|++
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 566776666776666665443222111 1111 0112344566667777777766665421 23455566666655555
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCc------chhHHHHHHHHHHhCCCHHHHHHHHH-------------hcCC--CCcc
Q 044988 266 IGDLKLGKWIHSYVEENFSVGREPV------LVSLNNALIHMYASCGEIEEAYGVFR-------------KMQR--RNTV 324 (538)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~-------------~m~~--~~~~ 324 (538)
- ++++..+.++..-.. -.+|. ....|.-++-.|..-.+++.|....- ++.. .|..
T Consensus 276 Y-~PeKlmEHlklf~sr---iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~E 351 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 351 (624)
T ss_dssp S-CTTHHHHHHTTSSSS---SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSH
T ss_pred c-CHHHHHHHHHHHHHh---ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHH
Confidence 4 333333332222111 12221 23345555555655555554432110 0000 2444
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc-------CC-Ccc-HHHHHHHHHHhhhcCCh
Q 044988 325 SWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW-------GI-KPR-IEHYGCMVDLFSRAGLM 395 (538)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~-~p~-~~~~~~l~~~~~~~g~~ 395 (538)
.|-..|.-|....- ...+.++.++...=|..++.++|++.-... .+ .-| ..+-.++-+.|....++
T Consensus 352 iyYKAi~FYL~e~P-----~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 352 LYYRAIQFYLEFKP-----LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp HHHHHHHHHTTSCC-----TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCh-----HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhH
Confidence 45544554444331 224556666666666666666666532110 11 112 34445666677777777
Q ss_pred HHHHHHHHhCC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044988 396 DEAFSLVQNMP------------MKPNDAVLGSLLLGCRIHNNAELASQVAQK 436 (538)
Q Consensus 396 ~~A~~~~~~~~------------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (538)
+.-....+.-. ..+-...-..-...|.+++++++++.+.++
T Consensus 427 ~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk 479 (624)
T 3lvg_A 427 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK 479 (624)
T ss_dssp HHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred HHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 65544443321 223333334444457788888877665443
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00036 Score=64.77 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHccCChHHHHHHHHHHHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQV------------------ALVAALSACAEIGDLKLGKWIHSYVEE 281 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~~~~ 281 (538)
.+..+...+.+.|++++|...|++.... .|+.. .|..+..++.+.|+++.|...++.+.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555556666667777777777766552 33332 678888889999999999999999998
Q ss_pred hccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 282 NFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
. .|.+...+..+..+|...|++++|...|++..+
T Consensus 259 ~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 E-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp H-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred h-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 677888888999999999999999999999876
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.0012 Score=52.05 Aligned_cols=112 Identities=11% Similarity=-0.022 Sum_probs=93.7
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMPMKPNDAVLGSLLLGCRI----HNNAELASQ 432 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~ 432 (538)
+++++|...|++..+. | .|+.. |...|...+.+++|.+.|++.....+...+..|...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4788999999999876 5 33333 888888889999999999988655788888889888888 899999999
Q ss_pred HHHHchhccCCCCcccHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044988 433 VAQKLVAEIDPEQAAGYLALVANVYAA----AKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 478 (538)
.|++. .+. .++..+. .|+.+|.. .++.++|.+++++..+.|.
T Consensus 83 ~~~~A-a~~--g~~~a~~-~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKA-CGL--NDQDGCL-ILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHH-HHT--TCHHHHH-HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HcC--CCHHHHH-HHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999 554 4555577 89999998 8999999999999988765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00019 Score=54.54 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 410 NDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+...+..+...+...|++++|+..++++ ....|++...+. .++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAA-LDFDPTYSVAWK-WLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666667777777777777777777 677777776666 777777777777777777777664
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.52 E-value=0.00067 Score=63.71 Aligned_cols=119 Identities=8% Similarity=-0.006 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCC-------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMPH-------------------RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (538)
.|..+...+.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 456666677777777777777766542 133567778888888888888888888887743
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHH
Q 044988 250 GLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYG 313 (538)
Q Consensus 250 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 313 (538)
+-+...+..+..++...|++++|...++.+.+. .|.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667777788888888888888888888886 56666777777777777776666554
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00014 Score=54.70 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred cchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc------hhHH
Q 044988 83 TAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSN------VFIR 156 (538)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 156 (538)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3456667777777888888888888777642 3355677777777788888888888888877653 222 4455
Q ss_pred hHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 157 TNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 157 ~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
..+..++...|+ .+.|...+++++
T Consensus 82 ~~~~~~~~~~~~---~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGS---VQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHC---CCCCSSSSSSCS
T ss_pred HHHHHHHHHHHh---HhhhHhHHHHhH
Confidence 556666666666 655555555443
No 201
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.48 E-value=0.00017 Score=70.49 Aligned_cols=115 Identities=11% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHH
Q 044988 61 FYVTSGYLINAHKVFEKTE---NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREG 137 (538)
Q Consensus 61 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 137 (538)
.+.+.|++++|++.|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +-+..+|..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555555443 2234455555566666666666666666655532 22344555555566666666666
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHH--HHhcCCCCChhHHHHHhh
Q 044988 138 EQVHGRVLASGYCSNVFIRTNLMNL--YLMSGGECGVGCARLLFD 180 (538)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~~~~a~~~~~ 180 (538)
.+.+++..+.. +.+...+..+..+ +.+.|+ +++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA---FERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHH---HCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH---HHHHhcccc
Confidence 66666655543 2223333333333 444455 555555444
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.001 Score=48.01 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 408 KPNDAVLGSLLLGCRIHNN---AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
.+|...+..+..++...++ .++|..+++++ ....|+++.+.. .++..+.+.|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A-L~~dp~~~rA~~-~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQA-LQLEPYNEAALS-LIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHCcCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456777777777654544 68999999999 999999999888 999999999999999999999987544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00056 Score=66.47 Aligned_cols=128 Identities=10% Similarity=-0.037 Sum_probs=86.0
Q ss_pred HHccCChHHHHHHHHHHHHhccC---CCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-------CC----cchHHH
Q 044988 263 CAEIGDLKLGKWIHSYVEENFSV---GREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR-------RN----TVSWTS 328 (538)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~----~~~~~~ 328 (538)
+...|++++|..+++...+.... ...|....+++.|..+|...|++++|..++++... ++ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888888877665332 12345667888999999999999999998887653 21 235666
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCC-Ccc-HHHHHHHHHHhhhcCChHHHHHHHHhCC
Q 044988 329 MITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGI-KPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP 406 (538)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (538)
|...|...|++++|... +++|+.+++... |- .|+ ..+.+.+..++...+.+++|..+|..++
T Consensus 399 La~~~~~~G~~~eA~~~-------------~~~Al~i~~~~l---G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGM-------------ICKAYAILLVTH---GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHH-------------HHHHHHHHHHHT---CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH-------------HHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777766666522 233444444433 32 233 4466777778888888888888887763
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00062 Score=65.10 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=88.9
Q ss_pred HHHhhhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHch----hccCCCCc---cc
Q 044988 386 VDLFSRAGLMDEAFSLVQNMP------MKPN----DAVLGSLLLGCRIHNNAELASQVAQKLV----AEIDPEQA---AG 448 (538)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~p~~~---~~ 448 (538)
+..+.+.|++++|++++++.. ..|+ ..+++.+..+|...|++++|+.+++++. .-+.|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999987652 2233 4578888889999999999999999886 23445544 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044988 449 YLALVANVYAAAKRWQDVAAVRQKMIKMGVRKPPGQSWVQINGVLHDFVAGDSTYKQASLIYKTLGEITMQAMQ 522 (538)
Q Consensus 449 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~ 522 (538)
+. .|+.+|...|++++|..++++..+--. ..-...||...+.+..+.+.+.+|+.
T Consensus 374 l~-nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VM-KVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 55 789999999999999999999875100 12245799999999999988888763
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0057 Score=43.46 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 044988 219 VSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNAL 298 (538)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (538)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. .|.+...+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l 83 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCHHHHHHH
Confidence 456666677777777777777777776642 224556666666777777777777777777765 45555555555
Q ss_pred HHHHHh
Q 044988 299 IHMYAS 304 (538)
Q Consensus 299 ~~~~~~ 304 (538)
..++..
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.12 E-value=0.00027 Score=56.21 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=44.0
Q ss_pred HHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhC
Q 044988 427 AELASQVAQKLVAEIDPEQAAGYLALVANVYAAAK-----------RWQDVAAVRQKMIKM 476 (538)
Q Consensus 427 ~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 476 (538)
+++|+..|+++ .++.|+...+|. .++.+|.+.| ++++|++.|++..+.
T Consensus 62 ~~eAi~~le~A-L~ldP~~~~A~~-~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEA-LLIDPKKDEAVW-CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHH-HHHCTTCHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhCcCcHHHHH-HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 67999999999 999999999899 9999999875 899999999999873
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.01 E-value=0.00088 Score=53.25 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred cCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCCh----------HHHHHHHHhCC-CCCC-HHHHHHHHHHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLM----------DEAFSLVQNMP-MKPN-DAVLGSLLLGCR 422 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~-~~p~-~~~~~~l~~~~~ 422 (538)
.+.+++|.+.++...+. .| +...|..+..++...+++ ++|+..|++.. +.|+ ...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34788899999998876 56 688888888888888764 58999998874 4555 778999999998
Q ss_pred hcC-----------CHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 423 IHN-----------NAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 423 ~~~-----------~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
..| ++++|++.|+++ .++.|++.. |...+ .. .++|-++.-.+...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kA-l~l~P~~~~-y~~al-~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQA-VDEQPDNTH-YLKSL-EM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCTTCHH-HHHHH-HH------HHTHHHHHHHHHHSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHH-HHhCCCCHH-HHHHH-HH------HHhCHhccCcccccc
Confidence 774 899999999999 999999877 55133 22 244556555555443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.005 Score=45.05 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044988 254 VALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 254 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (538)
..+..+...+...|++++|...++.+.+. .|.+...|..+..+|...|++++|.+.|++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET-----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444444443 333334444444444444444444444443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.89 E-value=0.0075 Score=45.36 Aligned_cols=77 Identities=9% Similarity=-0.075 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 044988 236 QALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVF 315 (538)
Q Consensus 236 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (538)
+|+..|++..+.. +.+...+..+...+...|+++.|...++...+. .|.+...+..+..+|...|++++|...|
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3555565555532 224555555666666666666666666666665 4445555556666666666666666666
Q ss_pred Hhc
Q 044988 316 RKM 318 (538)
Q Consensus 316 ~~m 318 (538)
++.
T Consensus 77 ~~a 79 (115)
T 2kat_A 77 ESG 79 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 210
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.86 E-value=0.44 Score=47.50 Aligned_cols=257 Identities=9% Similarity=0.013 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 044988 192 SLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKL 271 (538)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 271 (538)
..+..+.+.+++......+.. ...+...-.....+....|+..+|......+-..|- .....+..++..+.+.|.+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 344556667777777776665 323444444556667777887777776666655442 222334445554444333221
Q ss_pred HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcch-HHHHHHHHHhcCCcc----------
Q 044988 272 GKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVS-WTSMITGFAKQGYAQ---------- 340 (538)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~li~~~~~~~~~~---------- 340 (538)
...+ .-+......|+...|..+...+.. +... ...++..+..-....
T Consensus 155 --------------------~~~~-~R~~~al~~~~~~~a~~l~~~l~~-~~~~~a~~~~al~~~p~~~~~~~~~~~~~~ 212 (618)
T 1qsa_A 155 --------------------LAYL-ERIRLAMKAGNTGLVTVLAGQMPA-DYQTIASAIISLANNPNTVLTFARTTGATD 212 (618)
T ss_dssp --------------------HHHH-HHHHHHHHTTCHHHHHHHHHTCCG-GGHHHHHHHHHHHHCGGGHHHHHHHSCCCH
T ss_pred --------------------HHHH-HHHHHHHHCCCHHHHHHHHHhCCH-HHHHHHHHHHHHHhChHhHHHHHhccCCCh
Confidence 1122 122333344445555544444421 1111 111111111000000
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH--HHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 044988 341 EALLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI--EHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSL 417 (538)
Q Consensus 341 ~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 417 (538)
.....+...+.-..+. +.+.|...+....+...+.+.. ..+..+...+...+...++...+.... ..++.....-.
T Consensus 213 ~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (618)
T 1qsa_A 213 FTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHH
Confidence 0001111122222222 6788888888776553333322 233344444555553455555555432 23444334444
Q ss_pred HHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 418 LLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+....+.|+++.|...|+.+ ....+....... -++.++...|+.++|..+|+.+.+
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l-~~~~~~~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARL-PMEAKEKDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHS-CTTGGGSHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHc-cccccccHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45556778999999988888 443333344345 677788888998888888887753
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.84 E-value=0.0021 Score=61.31 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=51.6
Q ss_pred cCChHHHHHHHHhCC------CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHch----hccCCCCc---ccHHHHHH
Q 044988 392 AGLMDEAFSLVQNMP------MKP---N-DAVLGSLLLGCRIHNNAELASQVAQKLV----AEIDPEQA---AGYLALVA 454 (538)
Q Consensus 392 ~g~~~~A~~~~~~~~------~~p---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~p~~~---~~~~~~l~ 454 (538)
.|++++|..++++.. ..| + ..+++.|..+|...|++++|+.+++++. .-+.|+++ ..+. .|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~-nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL-KLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-HHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-HHH
Confidence 456666666665431 122 2 3466666777777777777777777665 22334433 3344 677
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 044988 455 NVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 788888888888888877764
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.74 E-value=0.057 Score=49.47 Aligned_cols=113 Identities=9% Similarity=0.127 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHhhhhcCCCcc-HHHHHHHHHHhhh----cCC-------hHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 044988 358 FVDEGRQFFECMNQNWGIKPR-IEHYGCMVDLFSR----AGL-------MDEAFSLVQNMP-MKPNDAVLGSLLLGCRIH 424 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~g~-------~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~ 424 (538)
...+|..+|++..+. .|+ ...|..+..+|.- .+. ...+.+....+. ...+..+|..+...+...
T Consensus 214 ~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 467788888887765 665 3444444433321 100 111222222222 245577777777767777
Q ss_pred CCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044988 425 NNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 476 (538)
|++++|...++++ ..+.|+. ..|. .++.++.-.|++++|.+.+++....
T Consensus 291 gd~d~A~~~l~rA-l~Ln~s~-~a~~-llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 291 GKTDESYQAINTG-IDLEMSW-LNYV-LLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHH-HHHCCCH-HHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCH-HHHH-HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888 7777653 3366 8888888888888888888877763
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.0067 Score=57.85 Aligned_cols=93 Identities=10% Similarity=-0.077 Sum_probs=70.6
Q ss_pred ccCcHHHHHHHHHHhhhhc----CC-Ccc-HHHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 044988 355 HGGFVDEGRQFFECMNQNW----GI-KPR-IEHYGCMVDLFSRAGLMDEAFSLVQNMP---------MKPN-DAVLGSLL 418 (538)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~ 418 (538)
..|++++|+.++++..+.. |- .|+ ..+++.|..+|...|++++|..++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456777777777655431 11 233 5689999999999999999999998763 3344 46889999
Q ss_pred HHHHhcCCHHHHHHHHHHch----hccCCCCcc
Q 044988 419 LGCRIHNNAELASQVAQKLV----AEIDPEQAA 447 (538)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~----~~~~p~~~~ 447 (538)
..|...|++++|+.+++++. .-+.|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 99999999999999999986 445666665
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.69 E-value=0.067 Score=40.37 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=83.3
Q ss_pred cCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh----------------------hhcCChHHHHHHHHhCCCCCCHHH
Q 044988 356 GGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLF----------------------SRAGLMDEAFSLVQNMPMKPNDAV 413 (538)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----------------------~~~g~~~~A~~~~~~~~~~p~~~~ 413 (538)
.|.++++.++..+.... .+..-||-.|--. ..+|++.....-+-.+. .+...
T Consensus 20 dG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n--~~se~ 93 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN--TLNEH 93 (172)
T ss_dssp TTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT--CCCHH
T ss_pred hhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc--chHHH
Confidence 46778888888877654 1222233222222 24556666665555553 45566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVR 479 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (538)
++..+.....+|+-++-.+++..+ .+..|.++.... -++.+|.+-|+..+|.+++++..++|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~-l~n~~~~~~~l~-kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREI-LKNNEVSASILV-AIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-C--CCSCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHH-hccCCCChHHHH-HHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 778888999999999999999997 566677777566 8999999999999999999999999984
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.65 E-value=0.017 Score=45.22 Aligned_cols=110 Identities=9% Similarity=-0.115 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC-CCCcchHHHHHHHHhc----CCCchHHHHH
Q 044988 31 NTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE-NPSTAIWNQMIRGHAR----SETPEKSVYL 105 (538)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~ 105 (538)
+++++|...+....+.|. +... |-..|...+.+++|.+.|++.- ..+...+..|...|.. .+++++|+.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 467888889998888872 2233 6777777778888988887755 4567778888888877 7889999999
Q ss_pred HHHhHhCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhC
Q 044988 106 YKQMIDKETEPDEYTYSFLLSVCAR----CGLFREGEQVHGRVLASG 148 (538)
Q Consensus 106 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 148 (538)
|++..+.| +...+..|...|.. .+++++|...+++..+.|
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99988764 56677778888877 788999999999888877
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.63 E-value=0.13 Score=51.15 Aligned_cols=181 Identities=8% Similarity=-0.042 Sum_probs=130.2
Q ss_pred CHHHHHHHHccCCC--C-ChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-
Q 044988 202 DIDGAWKIFDEMPH--R-NVVSWTTMISGCAQNGK----------SRQALSLFNEMRRARVGLDQVALVAALSACAEIG- 267 (538)
Q Consensus 202 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~- 267 (538)
..++|++.++++.. | +..+|+.--..+...|+ ++++++.++.+.+.. +-+...|..-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34577888887663 4 34567776666666666 899999999998753 335677777777777888
Q ss_pred -ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCC-CHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCccHH
Q 044988 268 -DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCG-EIEEAYGVFRKMQRR---NTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 268 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a 342 (538)
+++++...++.+.+. .|.+..+|+.-..++.+.| .++++.+.++++.+. |..+|+.....+.+.+...++
T Consensus 123 ~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 123 PNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 679999999999997 7889999998888888999 899999999999874 556777766666553222100
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHH
Q 044988 343 LLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDE 397 (538)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 397 (538)
.. .+-...+.++++.+.+...... .| |...|+-+...+.+.++.++
T Consensus 198 ~~------~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GP------QGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SS------CCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cc------cccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence 00 0000113578888999888865 56 57888888888888777444
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.0094 Score=46.79 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 044988 358 FVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAG---LMDEAFSLVQNMP-MK-P--NDAVLGSLLLGCRIHNNAELA 430 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A 430 (538)
.+..+++-|.+..+. + .++..+...+..++++.+ +.++++.+|+... .. | +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544432 2 245555555555555555 3445555555442 11 2 123333344445555555555
Q ss_pred HHHHHHchhccCCCCcc
Q 044988 431 SQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 431 ~~~~~~~~~~~~p~~~~ 447 (538)
.+.++.+ .+..|++..
T Consensus 91 ~~y~~~l-L~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGL-LQTEPQNNQ 106 (152)
T ss_dssp HHHHHHH-HHHCTTCHH
T ss_pred HHHHHHH-HhcCCCCHH
Confidence 5555555 555555544
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.59 E-value=0.002 Score=60.30 Aligned_cols=360 Identities=12% Similarity=0.083 Sum_probs=202.8
Q ss_pred ccccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhc
Q 044988 16 KALTTRQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHAR 95 (538)
Q Consensus 16 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 95 (538)
++..|..++.++.+.|.++.....+....+. ..++.+=+.|+-+|++.++..+-.+++. .||..-...+.+-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHH
Confidence 4457789999999999999998888776665 3456666789999999988766544332 3555555555555555
Q ss_pred CCCchHHHHHHHHhHhCC--------------------CCCCcchHHHHHHHHHccCCcHHHH-----------------
Q 044988 96 SETPEKSVYLYKQMIDKE--------------------TEPDEYTYSFLLSVCARCGLFREGE----------------- 138 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~li~~~~~~~~~~~a~----------------- 138 (538)
.|.++.|.-+|..+.... -.-++.||..+-.+|...+.+..|.
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv 236 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 236 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGG
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHH
Confidence 555555555544432110 0235567777777777666655543
Q ss_pred -------------HHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCC----C-------CchhHHHHH
Q 044988 139 -------------QVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPA----R-------SVVSWNSLL 194 (538)
Q Consensus 139 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~----~-------~~~~~~~li 194 (538)
.+++.-+.. -......|+.|.-.|++-. .++..+.++..-. | ....|.-++
T Consensus 237 ~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~----PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK----PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC----TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 333332211 1234456778888887765 4555555444332 2 456788888
Q ss_pred HHHHhcCCHHHHHHHHcc-------------CC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044988 195 KGYVKRGDIDGAWKIFDE-------------MP--HRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAA 259 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~-------------m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 259 (538)
-.|++-.++|.|....-. +. -.|...|-..|+.|.... +..--+++.-+.. .+.++ .+
T Consensus 312 fLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----Rv 384 (624)
T 3lvg_A 312 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RA 384 (624)
T ss_dssp HHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TT
T ss_pred HHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HH
Confidence 888888888866533211 11 145556666666665432 2222233322211 11111 22
Q ss_pred HHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC------------CCcchHH
Q 044988 260 LSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR------------RNTVSWT 327 (538)
Q Consensus 260 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~------------~~~~~~~ 327 (538)
++.+.+.|++.....++..+ ....+..+..++-+.|....+++.-+...+.-.. .+..-+.
T Consensus 385 V~~~~k~~~LpLIkpYL~~V-------q~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFR 457 (624)
T 3lvg_A 385 VNYFSKVKQLPLVKPYLRSV-------QNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFR 457 (624)
T ss_dssp HHHHHTTTCGGGGTGGGTSC-------CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHH
T ss_pred HHHHHhcCCchhhHHHHHHH-------HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHH
Confidence 33334444444433222211 2334455566777788888887765554433222 1111122
Q ss_pred H-HHHHHHhcCCccHHH------HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHHHH
Q 044988 328 S-MITGFAKQGYAQEAL------LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFS 400 (538)
Q Consensus 328 ~-li~~~~~~~~~~~a~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 400 (538)
. -...|.+++++.+++ ..|...+.....+|+.+.++++++...+. | +...|.+.+-.|-..=+++-+++
T Consensus 458 rIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 458 RIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHhhccChHHHHH
Confidence 2 233456677777766 45666666777777777777777777664 2 34455556555656666676666
Q ss_pred HHH
Q 044988 401 LVQ 403 (538)
Q Consensus 401 ~~~ 403 (538)
+-.
T Consensus 534 laW 536 (624)
T 3lvg_A 534 TAW 536 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.0051 Score=44.72 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHchhccCCCCcc-cHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 421 CRIHNNAELASQVAQKLVAEIDPEQAA-GYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~p~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+...|++++|...++++ ....|++.. .+. .++.+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~-~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEF-LQTEPVGKDEAYY-LMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHH-HHHCSSTHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-HHHCCCcHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444 444444444 444 444444444444444444444443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.27 Score=51.46 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=89.8
Q ss_pred HHccCCcHHHHH-HHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 044988 128 CARCGLFREGEQ-VHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGA 206 (538)
Q Consensus 128 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 206 (538)
....++++.|.+ ++.. .++......++..+.+.|. .+.|.++.+.. ..-.......|+++.|
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~--------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEY---YEEALNISPDQ--------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTC---HHHHHHHCCCH--------HHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCC---hHHheecCCCc--------chheehhhhcCCHHHH
Confidence 345667777655 4311 1101122566677777777 77777665321 1123345667888888
Q ss_pred HHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCC
Q 044988 207 WKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVG 286 (538)
Q Consensus 207 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (538)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+.+.....
T Consensus 672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~---- 736 (814)
T 3mkq_A 672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT---- 736 (814)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT----
T ss_pred HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc----
Confidence 88877664 456788888888888888888888887743 334444444466666555444444333
Q ss_pred CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 287 REPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
+. ++....+|.+.|++++|.+++.++
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 11 122333455566666666666554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.015 Score=55.54 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=74.3
Q ss_pred HHhcccCcHHHHHHHHHHhhhhcC--CCcc----HHHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCC-HHHH
Q 044988 351 SACSHGGFVDEGRQFFECMNQNWG--IKPR----IEHYGCMVDLFSRAGLMDEAFSLVQNMP---------MKPN-DAVL 414 (538)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~ 414 (538)
..+...|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456688888888887765321 2222 5689999999999999999999998763 3344 4688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHch----hccCCCCcc
Q 044988 415 GSLLLGCRIHNNAELASQVAQKLV----AEIDPEQAA 447 (538)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~p~~~~ 447 (538)
+.|...|...|++++|+.+++++. .-+.|+++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 899999999999999999999986 446677766
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.016 Score=41.90 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccH
Q 044988 385 MVDLFSRAGLMDEAFSLVQNMP-MKP-NDA-VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGY 449 (538)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~ 449 (538)
....+.+.|++++|.+.|++.. ..| +.. .+..+..++...|++++|...|+++ ....|++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA-IELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHH
Confidence 3455667778888887777663 234 345 6777777788888888888888888 77788777644
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.15 E-value=0.066 Score=49.07 Aligned_cols=73 Identities=10% Similarity=-0.052 Sum_probs=62.1
Q ss_pred CccHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 376 KPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
+.+..+|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.++++ ..+.|..++ |.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A-lrL~P~~~t-~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA-FNLRPGANT-LY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSCSHHH-HH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCcCh-HH
Confidence 4467888888887888899999999999874 5688888878888899999999999999999 999998876 55
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.21 Score=52.31 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=89.0
Q ss_pred HHHhccCChHHHHH-HHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHH
Q 044988 25 SLLQIRNTTKTLFQ-IHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSV 103 (538)
Q Consensus 25 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 103 (538)
......++++.|.+ ++.. + ++......++..+.+.|..++|.++.+.- ..-.....+.|+++.|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHH
Confidence 44455778887766 4421 1 11223367777788888888888776321 11133345678888888
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCC
Q 044988 104 YLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMP 183 (538)
Q Consensus 104 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~ 183 (538)
++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...|...|+ .+...++-+...
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~---~~~~~~~~~~a~ 734 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN---KEGLVTLAKDAE 734 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC---HHHHHHHHHHHH
Confidence 875433 4567888888888888888888888887643 3345555555665 444333221111
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHccC
Q 044988 184 ARSVVSWNSLLKGYVKRGDIDGAWKIFDEM 213 (538)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 213 (538)
.. .-++....+|.+.|++++|.+++.++
T Consensus 735 ~~--~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TT--GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HT--TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred Hc--CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 10 11233333445556666665555543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.65 E-value=0.11 Score=37.06 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=54.5
Q ss_pred CccHHHHHHHHHHhhhcCC---hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 376 KPRIEHYGCMVDLFSRAGL---MDEAFSLVQNMP-MKPN-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
+.|...+..+..++...++ .++|..++++.. ..|+ ......+...+.+.|++++|+..|+++ .+..|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~-l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL-LDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCcc
Confidence 3467777788877765554 789999998874 4454 667777777899999999999999999 888888443
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.68 Score=37.30 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=24.5
Q ss_pred HccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhH
Q 044988 63 VTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMI 110 (538)
Q Consensus 63 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 110 (538)
...|+++.|.++.+.+ .+...|..|.....++|+++-|.++|....
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455555555555444 234455555555555555555555555543
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.40 E-value=0.047 Score=42.85 Aligned_cols=80 Identities=8% Similarity=-0.071 Sum_probs=60.7
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhccC-C-CCcccHHHHHHHHHHhcCChHHHH
Q 044988 395 MDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHN---NAELASQVAQKLVAEID-P-EQAAGYLALVANVYAAAKRWQDVA 467 (538)
Q Consensus 395 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~-p-~~~~~~~~~l~~~~~~~g~~~~A~ 467 (538)
...+.+.|.+.. -.++..+.-.+..++.+.+ +.++++.+++.. .+.. | ++...+. .|+-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-l~~~~p~~~rd~lY-~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-LPKGSKEEQRDYVF-YLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHSCHHHHHHHHH-HHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhcCCccchHHHHH-HHHHHHHHccCHHHHH
Confidence 344444454431 2467888888888999988 667999999999 6656 6 4455566 8888999999999999
Q ss_pred HHHHHHHhC
Q 044988 468 AVRQKMIKM 476 (538)
Q Consensus 468 ~~~~~m~~~ 476 (538)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999874
No 228
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.23 E-value=1.6 Score=39.03 Aligned_cols=171 Identities=10% Similarity=0.016 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALS----LFNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45666677777788888777653 2233455677655555 45555667888888888888877655
Q ss_pred cCChH-HHHHHHHHHHHhcc-CCC-CCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CCc
Q 044988 266 IGDLK-LGKWIHSYVEENFS-VGR-EPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQ---GYA 339 (538)
Q Consensus 266 ~~~~~-~a~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~---~~~ 339 (538)
...-+ .-..+.+.+.+.-. .++ ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 12334444443321 111 2346677788999999999999999988743333566777777766665 655
Q ss_pred cHHHHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 340 QEALLTFLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 340 ~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
.++-......+--|.-.|++..|..+|+...+
T Consensus 185 ~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55543334444444556677777777766543
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.12 E-value=0.18 Score=44.35 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHhhhhcCCCcc---HHHHHHHHHHhhhc-----CChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh-cC
Q 044988 358 FVDEGRQFFECMNQNWGIKPR---IEHYGCMVDLFSRA-----GLMDEAFSLVQNMP-MKPN--DAVLGSLLLGCRI-HN 425 (538)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~-~~ 425 (538)
....|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++.. +.|+ ..++......++. .|
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 567778888887765 676 56889999989884 89999999998874 5663 6777777777777 48
Q ss_pred CHHHHHHHHHHchhccCCCC-cccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 426 NAELASQVAQKLVAEIDPEQ-AAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
+.+.+.+.+++. ....|.. +. + .+ ...++-++|..+++++.
T Consensus 255 d~~~a~~~L~kA-L~a~p~~~P~-~--~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRA-LAIDPESVPH-N--KL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHH-HHCCGGGCSS-C--HH----HHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHH-HcCCCCCCCC-h--hH----HHHHHHHHHHHHHHHhH
Confidence 999999999999 7776664 33 2 22 22334466777766654
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.11 E-value=0.11 Score=39.12 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHH---HHHHHHhCCCC--C-C-HHHHHHHHHHHHhcCCHHH
Q 044988 357 GFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDE---AFSLVQNMPMK--P-N-DAVLGSLLLGCRIHNNAEL 429 (538)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p-~-~~~~~~l~~~~~~~~~~~~ 429 (538)
..+..+++-|...... | .|+..+-..+..++.+..+... ++.+++.+... | + ....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555554443 2 2555555666666666665444 66666655322 2 1 1222334445666666666
Q ss_pred HHHHHHHchhccCCCCcc
Q 044988 430 ASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 430 A~~~~~~~~~~~~p~~~~ 447 (538)
|.+.++.+ .+..|++..
T Consensus 93 A~~~~~~l-L~~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGL-LQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHH-HHHCTTCHH
T ss_pred HHHHHHHH-HHhCCCCHH
Confidence 66666666 666666655
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.03 E-value=0.088 Score=38.57 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCccc
Q 044988 378 RIEHYGCMVDLFSRAGLMDEAFSLVQNMP---------MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAG 448 (538)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~ 448 (538)
+..-+..|...+.+.|++..|...|+... -.+....+..+..++.+.|+++.|...++++ ..+.|++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-HhcCCCCHHH
Confidence 44455677778888888888888887652 0134677888888999999999999999999 8999998774
Q ss_pred HH
Q 044988 449 YL 450 (538)
Q Consensus 449 ~~ 450 (538)
..
T Consensus 83 ~~ 84 (104)
T 2v5f_A 83 NG 84 (104)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.99 E-value=1.1 Score=36.01 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=60.3
Q ss_pred HHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 044988 163 YLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFN 242 (538)
Q Consensus 163 ~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (538)
....|+ ++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.++..++-+
T Consensus 15 AL~lg~---l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 15 ALEYGN---LDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHTTC---HHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhcCC---HHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 345555 66666665544 2455677777777777777777777777654 3344444555677666655555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 044988 243 EMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSY 278 (538)
Q Consensus 243 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 278 (538)
.....| -++....++.-.|+++++.+++..
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443 234455556667777777777643
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.97 E-value=0.27 Score=35.87 Aligned_cols=65 Identities=11% Similarity=-0.091 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 218 VVSWTTMISGCAQNGKSRQALSLFNEMRRAR------VGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
...+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445567777778888888888888776521 1234556667777777777777777777777765
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.85 E-value=0.08 Score=46.46 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=68.2
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHchhccCCCC-cccHHHHHHHHHHhc-CCh
Q 044988 395 MDEAFSLVQNMP-MKPN---DAVLGSLLLGCRI-----HNNAELASQVAQKLVAEIDPEQ-AAGYLALVANVYAAA-KRW 463 (538)
Q Consensus 395 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~-g~~ 463 (538)
...|...+++.. ..|+ ...|..+...|.+ -|+.++|.+.|+++ ..+.|+. ...+. ..++.++.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA-L~LnP~~~id~~v-~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL-TRYCSAHDPDHHI-TYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH-HHHCCTTCSHHHH-HHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH-HHhCCCCCchHHH-HHHHHHHHhcCCH
Confidence 456666666653 5677 5688888888888 49999999999999 9999975 77788 889999884 999
Q ss_pred HHHHHHHHHHHhCCCC
Q 044988 464 QDVAAVRQKMIKMGVR 479 (538)
Q Consensus 464 ~~A~~~~~~m~~~~~~ 479 (538)
++|.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999986654
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.17 Score=51.38 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHhcccCc-HHHHHHHHHHhhhhcCCCccHHH--HHHHHHHhhhcCC-hHHHHHHHHhCC---------CC-CCHH----
Q 044988 351 SACSHGGF-VDEGRQFFECMNQNWGIKPRIEH--YGCMVDLFSRAGL-MDEAFSLVQNMP---------MK-PNDA---- 412 (538)
Q Consensus 351 ~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~-~~~A~~~~~~~~---------~~-p~~~---- 412 (538)
..+...++ ++.|..+|+++.+. .|...+ ...++..+.+.++ --+|.+++.+.. .. .+..
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 33334445 57899999999876 554332 2334444444332 223444443321 11 1111
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044988 413 ------VLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI 474 (538)
Q Consensus 413 ------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 474 (538)
....-...|...|+++.|+++.+++ ....|.+..+|. .|+.+|.+.|+|+.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A-V~~aPseF~tW~-~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTS-TELALDSFESWY-NLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHH-HHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHH-HhcCchhhHHHH-HHHHHHHHhccHHHHHHHHhcCC
Confidence 1222233477899999999999999 999999999999 99999999999999999999985
No 236
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.38 E-value=2.8 Score=37.77 Aligned_cols=171 Identities=15% Similarity=0.079 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHc
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSL----FNEMRRARVGLDQVALVAALSACAE 265 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~li~~~~~ 265 (538)
|.++..-|.+.+++++|++++-. -...+.+.|+...+-++ ++...+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566667777888888777543 22334555666554444 3555567888888887777777765
Q ss_pred cCChH-HHHHHHHHHHHhccC-C-CCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHH
Q 044988 266 IGDLK-LGKWIHSYVEENFSV-G-REPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEA 342 (538)
Q Consensus 266 ~~~~~-~a~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a 342 (538)
...-+ .-..+.+.+.+.-.. + ...-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 54321 112333333332111 1 23445667778999999999999999999532233346787777777766665555
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 044988 343 LLTFLGVLSACSHGGFVDEGRQFFECMNQ 371 (538)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (538)
-......+--|.-.+++..|..+++...+
T Consensus 187 dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 54455555556667788888887766554
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.37 E-value=1.3 Score=33.98 Aligned_cols=66 Identities=5% Similarity=-0.036 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 409 PNDAVLGSLLLGCRIHNNA---ELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 409 p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
|+..+--.+..++.+..+. .+++.+++.+ ....|....-+.-.|+-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l-~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDI-YKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH-HHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444555554432 3555666665 4444533222222556666666666666666666665
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.10 E-value=1.4 Score=33.36 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 222 TTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
+..+..+...|.-+.-.+++..+.. +.+|++.....+..+|.+.|+..++..++..+.+.
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3334444444444444444444322 22344444444444444444444444444444444
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=4.3 Score=38.72 Aligned_cols=232 Identities=9% Similarity=0.026 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcc--hh
Q 044988 221 WTTMISGCAQNGKSRQALSLFNEMRRA--RVGLD---QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVL--VS 293 (538)
Q Consensus 221 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 293 (538)
...|...|...|++.+|.+++..+... |.-+. ...+...++.|...+++..|..++..+.........++. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777888888888888887643 22111 234556677788888888888888776542211122222 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHHHhhhhc
Q 044988 294 LNNALIHMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFECMNQNW 373 (538)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (538)
.+...+..+...+++.+|-+.|.++.+ .+...++..........++.+..-.+....-..+.......
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~-----------~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~- 287 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ-----------TDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND- 287 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-----------cccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-
Confidence 556677777788888888877766532 22222222211111111111110011111111222222222
Q ss_pred CCCccHHHHHHHHHHhhhc--CChHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCC
Q 044988 374 GIKPRIEHYGCMVDLFSRA--GLMDEAFSLVQNMPMK--------PNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDP 443 (538)
Q Consensus 374 ~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p 443 (538)
...++...|..++.+|... .+++.+.+.|...... .....|..|......++ +-.. ..|
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn-l~~i----------~k~ 356 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHN-LRVI----------SEY 356 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHH-HHHH----------HHH
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHH-HHHH----------HHH
Confidence 2235677888899988764 4677777777654211 11223444433322211 1111 122
Q ss_pred CCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 444 EQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 444 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
-....+. .++..+.- ..+++...+.+|...|.
T Consensus 357 Ys~I~l~-~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 357 YSRITLL-RLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp EEEEEHH-HHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred hceeeHH-HHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 2222255 66554432 57889999999986554
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.34 E-value=0.91 Score=34.15 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHchhccC-C-CCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 408 KPNDAVLGSLLLGCRIHNNAEL---ASQVAQKLVAEID-P-EQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~-p-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.|+..+--.+..++.+..+... ++.+++.+ .... | ....... .|+-++.+.|++++|.+.++.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l-~~~~~p~~~Rd~lY-~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL-LPKGSKEEQRDYVF-YLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-TTTSCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhcCCcchHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3666666667777777776555 77788877 4444 4 2333334 677788888888888888888876
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.40 E-value=1 Score=34.03 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 417 LLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
|.-++.+.|++++|.+..+.+ .+..|++..
T Consensus 84 LAvg~yklgdY~~Ar~y~d~l-L~~eP~N~Q 113 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTL-FEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HTTCTTCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH-HhhCCCCHH
Confidence 333444445555555555544 444444443
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.35 E-value=9.7 Score=37.94 Aligned_cols=79 Identities=9% Similarity=-0.030 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL 133 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 133 (538)
.-+.-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334555666677777777776665 33344444455666677777777777766666554 3455566666666665554
Q ss_pred c
Q 044988 134 F 134 (538)
Q Consensus 134 ~ 134 (538)
+
T Consensus 152 l 152 (618)
T 1qsa_A 152 Q 152 (618)
T ss_dssp S
T ss_pred C
Confidence 3
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.62 E-value=3.8 Score=38.10 Aligned_cols=163 Identities=12% Similarity=0.003 Sum_probs=85.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 044988 296 NALIHMYASCGEIEEAYGVFRKMQR--------RNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQFFE 367 (538)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~~~ 367 (538)
..|...|.+.|+.++..+++..... +.......++..+.......+- .++-..+.++
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~---------------~~~~~~~~~~ 87 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGI---------------EVQLCKDCIE 87 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHH---------------HHHHHHHHHH
Confidence 4677888888888888888877654 1112233344444433322111 1233333333
Q ss_pred HhhhhcCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHch-
Q 044988 368 CMNQNWGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP---MKPN-----DAVLGSLLLGCRIHNNAELASQVAQKLV- 438 (538)
Q Consensus 368 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 438 (538)
........-.....=.-|+..|...|++.+|.+++.++. .+.| ...+-.-+..|...++..++..++..+.
T Consensus 88 ~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 88 WAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 333220000011122357777888888888877777663 1212 1233444556777888888888887775
Q ss_pred -hccCCCCcc---cHHHHHHHHHH-hcCChHHHHHHHHHH
Q 044988 439 -AEIDPEQAA---GYLALVANVYA-AAKRWQDVAAVRQKM 473 (538)
Q Consensus 439 -~~~~p~~~~---~~~~~l~~~~~-~~g~~~~A~~~~~~m 473 (538)
....+.++. .+...-+..+. ..++|.+|...|-+.
T Consensus 168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 111112221 11113344456 678888887766554
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.80 E-value=1 Score=34.97 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044988 424 HNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMG 477 (538)
Q Consensus 424 ~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 477 (538)
.+|+++|.++|+.+ ..+.......|. ..+..-.++|+.+.|.+++.+....+
T Consensus 73 i~D~d~aR~vy~~a-~~~hKkFAKiwi-~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMA-RANCKKFAFVHI-SFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHH-HHHCTTBHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHH-HHHhHHHHHHHH-HHHHHHHHcccHHHHHHHHHHHhccC
Confidence 35666667777766 333333333344 44555556677777777766666543
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.40 E-value=9.3 Score=34.10 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=98.9
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHHHHHHHHHHHHhcccCcHHHHHHH----HHHhhhhcCC
Q 044988 300 HMYASCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEALLTFLGVLSACSHGGFVDEGRQF----FECMNQNWGI 375 (538)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~ 375 (538)
..-...|++=+|.+.+ .++..-|.+.+++++|+.....-...+.+.|....|-++ .+-..+. ++
T Consensus 21 ~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~ 88 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EV 88 (312)
T ss_dssp HHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CC
Confidence 3444556666666554 456777888999999998877777777777887776665 3333333 78
Q ss_pred CccHHHHHHHHHHhhhcCC--------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCC
Q 044988 376 KPRIEHYGCMVDLFSRAGL--------MDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQ 445 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~ 445 (538)
+++......++..+..... ..+|++.-.+.. ...++..+..+...+.+.|++.+|...|=.. ..++
T Consensus 89 ~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s 164 (312)
T 2wpv_A 89 KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDS 164 (312)
T ss_dssp CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCcc
Confidence 8888888888887765432 233444443332 2357788888888899999999998877533 1223
Q ss_pred cccHHHHHHHHHHhc--CChHHHHH
Q 044988 446 AAGYLALVANVYAAA--KRWQDVAA 468 (538)
Q Consensus 446 ~~~~~~~l~~~~~~~--g~~~~A~~ 468 (538)
+..+...+.+-+.+. |...++--
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHH
Confidence 344654555555443 66555443
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.37 E-value=1.8 Score=33.55 Aligned_cols=59 Identities=7% Similarity=0.095 Sum_probs=44.6
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH
Q 044988 96 SETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFI 155 (538)
Q Consensus 96 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (538)
.+++++|.++|+.+++.+-+- ...|......-.++|++..|.+++...+..+..|....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 378999999999997642222 55666666667889999999999999999886655443
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.20 E-value=0.68 Score=43.37 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCCce
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMI-----KMGVRKPPGQ 484 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 484 (538)
...++.++...|++++|...++.+ ....|-+...+. .++.+|.+.|+..+|.+.|++.. +-|+.|.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~-~~~~P~~E~~~~-~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEAL-TFEHPYREPLWT-QLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667778889999999999988 888898888777 88899999999999999888875 3588877643
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.85 E-value=0.93 Score=35.88 Aligned_cols=101 Identities=17% Similarity=0.057 Sum_probs=56.1
Q ss_pred CCCccHHH--HHHHHHHhhhcCChHHHHHHHHhCC----CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHch--
Q 044988 374 GIKPRIEH--YGCMVDLFSRAGLMDEAFSLVQNMP----MKPN-------DAVLGSLLLGCRIHNNAELASQVAQKLV-- 438 (538)
Q Consensus 374 ~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 438 (538)
|+.|.... +-.-++.+...|.++.|+-+.+.+. ..|+ ..++..+.+++...+++.+|...|+++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44454333 2333555666677777766665532 2233 1244555666777777777777777754
Q ss_pred hccCCCC----------------------cccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 439 AEIDPEQ----------------------AAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 439 ~~~~p~~----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
.+.-|.. ...-. .++.+|.+.|++++|+.+++.+..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elky-kia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKY-KLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHH-HHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHH-HHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111111 12234 678899999999999999988653
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.58 E-value=4.3 Score=44.23 Aligned_cols=53 Identities=6% Similarity=0.043 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044988 191 NSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEM 244 (538)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 244 (538)
..++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|...|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666777777777776655544 3333345567788889999999888765
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.48 E-value=4 Score=29.02 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHH
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIH 300 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (538)
+.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++++.++.. ......+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-----~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----hcCchhhHHHHHH
Confidence 55677788888888889999999999999999999999999999988887 2222445555543
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.33 E-value=18 Score=34.44 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 232 GKSRQALSLFNEMRR-----ARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 232 ~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
|+++.|++.+..+.+ ............++..|...++++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 678889888877664 235556778888999999999999988877776654
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.01 E-value=15 Score=39.95 Aligned_cols=207 Identities=9% Similarity=-0.006 Sum_probs=116.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C---cchHHHHHH
Q 044988 258 AALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQRR---N---TVSWTSMIT 331 (538)
Q Consensus 258 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~---~~~~~~li~ 331 (538)
.++..+...+..+.+..+.. . .+.+....-.+..+|..+|++++|...|.+.... + ......+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~----~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIG----W-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHH----H-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhh----h-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccc
Confidence 34455556666666554332 2 2223222236788899999999999999987541 1 111111111
Q ss_pred HHHhcCCccHH-HHHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCC-cc--HHHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 044988 332 GFAKQGYAQEA-LLTFLGVLSACSHGGFVDEGRQFFECMNQNWGIK-PR--IEHYGCMVDLFSRAGLMDEAFSLVQNMP- 406 (538)
Q Consensus 332 ~~~~~~~~~~a-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 406 (538)
. ......... ...|..++..+.+.+.++.+.++-+...+.-+-. ++ ...|..+...+...|++++|...+-.++
T Consensus 888 ~-~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 888 I-AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp H-HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred c-cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 1 110000010 1457777777778888888887777666542212 22 2368889999999999999998887664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHH------------HHHHHHHHchhcc-CCCCcccHHHHHHHHHHhcCChHHHHHH-HHH
Q 044988 407 MKPNDAVLGSLLLGCRIHNNAE------------LASQVAQKLVAEI-DPEQAAGYLALVANVYAAAKRWQDVAAV-RQK 472 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~~~~~------------~A~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~ 472 (538)
..--...+..|+...+..|..+ +..+++..--... .+.+...|...|-.-+...|++..|..+ |+.
T Consensus 967 ~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 967 TPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 1122456677777666666543 3334433221111 2222212443666666777777766654 454
Q ss_pred HH
Q 044988 473 MI 474 (538)
Q Consensus 473 m~ 474 (538)
..
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.46 E-value=11 Score=31.16 Aligned_cols=91 Identities=7% Similarity=0.031 Sum_probs=38.4
Q ss_pred CchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHH
Q 044988 151 SNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQ 230 (538)
Q Consensus 151 ~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 230 (538)
++..+-...+.+..+.|+ .+....+.+.+..++...-...+.++.+.|..+....+...+..++..+-...+.++.+
T Consensus 93 ~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333444444444444444 32222333333334444444444444444444333333333444554444444555555
Q ss_pred cCCHHHHHHHHHHHH
Q 044988 231 NGKSRQALSLFNEMR 245 (538)
Q Consensus 231 ~~~~~~a~~~~~~m~ 245 (538)
.+. .++...+..+.
T Consensus 170 ~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLA 183 (211)
T ss_dssp HCS-HHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHH
Confidence 544 33444444443
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.92 E-value=3.1 Score=29.59 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=45.4
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHH
Q 044988 98 TPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLM 160 (538)
Q Consensus 98 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 160 (538)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344566677777777888999999999999999999999999888887653 33344555443
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.25 E-value=28 Score=36.41 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=19.2
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHH
Q 044988 19 TTRQIFSLLQIRNTTKTLFQIHSQII 44 (538)
Q Consensus 19 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 44 (538)
-|..+++...+.++.+.+.++|..+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777778888888888765
No 256
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.25 E-value=14 Score=30.21 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=36.1
Q ss_pred chhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHc
Q 044988 152 NVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQN 231 (538)
Q Consensus 152 ~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 231 (538)
+..+-...+.++.+.++ .+....+...+..++...-...+.++.+.++.+....+...+..++..+-...+.++.+.
T Consensus 89 ~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp SHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33344444444444444 322222233333334333344444444444433333333333344444444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 044988 232 GKSRQALSLFNEMR 245 (538)
Q Consensus 232 ~~~~~a~~~~~~m~ 245 (538)
|. .++...+..+.
T Consensus 166 ~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 166 GG-ERVRAAMEKLA 178 (201)
T ss_dssp CS-HHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHH
Confidence 44 23333333333
No 257
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.13 E-value=15 Score=30.37 Aligned_cols=143 Identities=9% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 044988 49 SQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVC 128 (538)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 128 (538)
.++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3566666667777777777555555556666677766666677777777644 4444444443 46777777777888
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCC
Q 044988 129 ARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGD 202 (538)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (538)
.+.++.+.. ..+..+.+ .++..+-...+.++.+.|+ .+....+..-+..++...-...+.++.+.+.
T Consensus 106 ~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGD---ERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 888775443 33333432 5677777888888888887 5544445555555666666666777777665
No 258
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.98 E-value=15 Score=30.13 Aligned_cols=144 Identities=10% Similarity=0.007 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHH
Q 044988 50 QKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCA 129 (538)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 129 (538)
++..+-...+..+...+..+....+.+.+..++...-...+.++.+.++.+. ...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4555555555555555554444445555555666555556666666665543 344444443 466667777777777
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHH
Q 044988 130 RCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSWNSLLKGYVKRGDID 204 (538)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 204 (538)
..++.+....+ ..+.. .++..+-...+.+..+.++ .+....+...+..++...-...+.++.+.|..+
T Consensus 102 ~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 102 QIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGD---ERAVEPLIKALKDEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH
T ss_pred HhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh
Confidence 77765433333 33332 4677777777888888887 544444445555566666666677777766543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.46 E-value=8.9 Score=30.33 Aligned_cols=115 Identities=7% Similarity=0.022 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCC-----CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHH
Q 044988 189 SWNSLLKGYVKRGDIDGAWKIFDEMP-----HRNV-------VSWTTMISGCAQNGKSRQALSLFNEMRRA-RVGL-DQV 254 (538)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~ 254 (538)
.+-.-++.+...|.++.|+-+.+.+. .+++ .++..+..++...|++..|...|++..+. ..-+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44455677777888888877766643 1332 24556667778888888888888876542 1111 111
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 255 ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 255 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
+...+- ....... .. ..+.+..+---+..+|.+.|++++|+.+++.++.
T Consensus 102 ~~~~~~---~~ss~p~----------s~----~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTG---NSASTPQ----------SQ----CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccc---ccCCCcc----------cc----cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111110 0000000 00 1233444445688999999999999999999865
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.14 E-value=3 Score=38.94 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-----hCCCCchhHH
Q 044988 88 QMIRGHARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLA-----SGYCSNVFIR 156 (538)
Q Consensus 88 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 156 (538)
.++..+...|++++++..+..+.... +.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|...+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556677889999998888887653 45777899999999999999999998887754 4888876543
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.40 E-value=4.7 Score=41.08 Aligned_cols=122 Identities=16% Similarity=0.027 Sum_probs=77.0
Q ss_pred HHHHHHhcCC-HHHHHHHHccCCC--CChHHH--HHHHHHHHHcC-CHHHHHHHHHHHHHC------CCCC-CHH-----
Q 044988 193 LLKGYVKRGD-IDGAWKIFDEMPH--RNVVSW--TTMISGCAQNG-KSRQALSLFNEMRRA------RVGL-DQV----- 254 (538)
Q Consensus 193 li~~~~~~g~-~~~A~~~~~~m~~--~~~~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p-~~~----- 254 (538)
++..+...|+ .+.|.++|+++.+ |...++ ..++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 4444444555 5778888888764 333322 22233222222 223455555554321 1222 111
Q ss_pred -----HHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 044988 255 -----ALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQ 319 (538)
Q Consensus 255 -----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (538)
....-..-|.+.|+++.|..+-+..... .|..-.+|..|..+|...|+++.|.-.++.++
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111123356789999999999999987 89999999999999999999999999999886
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.70 E-value=11 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHH
Q 044988 233 KSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALI 299 (538)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (538)
|.-+..+-++.+....+.|+.......+++|-+.+++..|.++++-++.. ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-----~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCCchhhHHHHH
Confidence 45567777777878889999999999999999999999999999998887 222344555554
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.52 E-value=9 Score=28.93 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=46.2
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHH
Q 044988 101 KSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLM 160 (538)
Q Consensus 101 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 160 (538)
+..+-++.+...++.|++......+++|.+.+|+..|..+++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 456667777778889999999999999999999999999999888763 34445565543
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.78 E-value=26 Score=28.77 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044988 407 MKPNDAVLGSLLLGCRI--HNNAELASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRK 480 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 480 (538)
.+.|..-...-+.-... .++...+..+|..|. .++.-.....|. ..+..+...|++++|.++|+.=.+.+-.|
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe-~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYE-EFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44565444333333222 455778888888886 566666666566 78888888899999999888877766644
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.43 E-value=75 Score=33.35 Aligned_cols=235 Identities=11% Similarity=-0.010 Sum_probs=111.8
Q ss_pred HHHHhcCCHHHHHHHHccCCC----CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 044988 195 KGYVKRGDIDGAWKIFDEMPH----RNVV--SWTTMISGCAQNGKSRQALSLFNEMRRARV-------GLDQVALVAALS 261 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~ 261 (538)
-+....|+.++++.+++.... .+.. .-..+.-+....|..+++..++.......- .+....-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 355667888888888877553 1222 223333445555655667776666554211 011111222222
Q ss_pred HHHc--cCChHHHHHHHHHHHHhccCCCCCcchh--HHHHHHHHHHhCCCHHHHHHHHHhcCC-CCcchH--HHHHHHHH
Q 044988 262 ACAE--IGDLKLGKWIHSYVEENFSVGREPVLVS--LNNALIHMYASCGEIEEAYGVFRKMQR-RNTVSW--TSMITGFA 334 (538)
Q Consensus 262 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~--~~li~~~~ 334 (538)
+.+- .++. ++...+..+... .. .... .--+|...+.-.|+.+....++..+.+ .+.... -.+.-++.
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~d----d~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYN----DS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHT----CC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCH-HHHHHHHHHHhc----CC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 3332 3333 333333333332 11 1111 112344445566777666666665432 121122 22222333
Q ss_pred hcCCccHHHH----------------HHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhhhcCChHHH
Q 044988 335 KQGYAQEALL----------------TFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRIEHYGCMVDLFSRAGLMDEA 398 (538)
Q Consensus 335 ~~~~~~~a~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 398 (538)
..|+.+.+.. .-..+.-+|+..|+.....++++.+... ...++.....+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHH
Confidence 4455554431 1122345677888888777788888753 233444334444455556666666
Q ss_pred HHHHHhCCCCCCHHHHHHH--HHHHHhcCCH-HHHHHHHHHc
Q 044988 399 FSLVQNMPMKPNDAVLGSL--LLGCRIHNNA-ELASQVAQKL 437 (538)
Q Consensus 399 ~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~-~~A~~~~~~~ 437 (538)
.++++.+....|..+-... ..+....|+. .++..++..+
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 6666655323343333322 2233333332 4566666665
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.32 E-value=15 Score=28.13 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=53.9
Q ss_pred CccHHHHHHHHHHhhhcCChH---HHHHHHHhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 376 KPRIEHYGCMVDLFSRAGLMD---EAFSLVQNMP-MKP-N-DAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 376 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
.|+..+--.+..++.+..+.+ +++.+++.+- ..| + ....-.|.-++.+.|++++|.++.+.+ .+..|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l-L~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHH
Confidence 577777777888888877644 5777777663 234 2 334445666799999999999999999 999999977
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.89 E-value=17 Score=25.71 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhH
Q 044988 31 NTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMI 110 (538)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 110 (538)
-+.++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777777766654 22222222344566788888888887777777777776654 46677777777776776
Q ss_pred hCCCCCCcchHH
Q 044988 111 DKETEPDEYTYS 122 (538)
Q Consensus 111 ~~~~~p~~~~~~ 122 (538)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 655 44444443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.56 E-value=10 Score=35.84 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchh-HHH
Q 044988 220 SWTTMISGCAQNGKSRQALSLFNEMRRA--RVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVS-LNN 296 (538)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 296 (538)
++..+...|.+.|++++|.+.|.++... +..--...+..+++.+...+++..+......+......++.+.... ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888999999999999998864 3333355677888888889999999998888877655444332221 111
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 044988 297 ALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 297 ~l~~~~~~~g~~~~a~~~~~~m 318 (538)
.-...+...+++..|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2223344678888888877664
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.02 E-value=18 Score=25.61 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhH
Q 044988 31 NTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMI 110 (538)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 110 (538)
-+.++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345666666666666553 22222222334556777777777777777777777766654 35566666666666665
Q ss_pred hCCCCCCcchH
Q 044988 111 DKETEPDEYTY 121 (538)
Q Consensus 111 ~~~~~p~~~~~ 121 (538)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 554 3443333
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.86 E-value=20 Score=31.03 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHhcCCHHHHHHHHccCC-C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044988 195 KGYVKRGDIDGAWKIFDEMP-H---RNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGL 251 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 251 (538)
...+..|+.+.+..+++... . .+....+.+.. .+..++.....++++.+.+.|..+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCC
Confidence 33444566666665555422 1 12222222222 233444444445555555555444
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.71 E-value=45 Score=29.99 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHH----HHhHhCCCCCCcchHHHHHHHHH
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLY----KQMIDKETEPDEYTYSFLLSVCA 129 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~li~~~~ 129 (538)
.|..+..-|.+.+++++|++++-.- ...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5666777788888888888875321 23345566666555544 44555677888777777777665
Q ss_pred ccC
Q 044988 130 RCG 132 (538)
Q Consensus 130 ~~~ 132 (538)
...
T Consensus 106 ~~~ 108 (336)
T 3lpz_A 106 LFQ 108 (336)
T ss_dssp TSC
T ss_pred hCC
Confidence 544
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.53 E-value=28 Score=30.07 Aligned_cols=116 Identities=9% Similarity=0.138 Sum_probs=75.7
Q ss_pred HhcccCcHHHHHHHHHHhhhhcCCCc-cHHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcC
Q 044988 352 ACSHGGFVDEGRQFFECMNQNWGIKP-RIEHYGCMVDLFSRAGLMDEAFSLVQNMP-MKPN----DAVLGSLLLGCRIHN 425 (538)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~ 425 (538)
...+.|+++.+++....-++. .| |...-..|++.+|-.|+++.|.+-++... ..|+ ..+|..+|.+-....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~ 82 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 445678899998888887765 45 78888999999999999999998887663 3344 456666666532111
Q ss_pred CHHHHHHHHHHchhccCCCCcccHHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 044988 426 NAELASQVAQKLVAEIDPEQAAGYLALVANVYA--AAKRWQDVAAVRQKMIKM 476 (538)
Q Consensus 426 ~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 476 (538)
+ +|.--..-..+..+..+...|..++. ..|+.++|.++-....+.
T Consensus 83 ~------vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 83 D------FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H------HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H------HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 0 11100011222333335546666654 569999999999888643
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.98 E-value=23 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 262 ACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
...+.|+++.+......-++. .|.+...-..|+..+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445677777777777766664 777777777888888888888888887776654
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.03 E-value=5.8 Score=37.59 Aligned_cols=58 Identities=9% Similarity=-0.105 Sum_probs=25.8
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhhcCCCc--cHHHHHHHHHHhhhcCChHHHHHHHHhC
Q 044988 347 LGVLSACSHGGFVDEGRQFFECMNQNWGIKP--RIEHYGCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
..+...+.+.|+++.|.+++.++.... ..+ -...+-..++.+...+++..+...++++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444445555555555555544331 111 1334444444444455555544444443
No 275
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=68.50 E-value=3.8 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.4
Q ss_pred CcchHHHHHHHHHHHHHHHHcCcccCCccc
Q 044988 503 YKQASLIYKTLGEITMQAMQEGYKPDISEL 532 (538)
Q Consensus 503 ~~~~~~~~~~l~~~~~~m~~~~~~p~~~~~ 532 (538)
.+....++..+++...++|..|++||..++
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 345577788888899999999999997654
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.37 E-value=36 Score=29.72 Aligned_cols=142 Identities=8% Similarity=0.068 Sum_probs=59.3
Q ss_pred HHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcch--HHHHHHHHHccCCcHH
Q 044988 59 LAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEYT--YSFLLSVCARCGLFRE 136 (538)
Q Consensus 59 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~ 136 (538)
+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+.- +.+.|..++... -.+.+...+..|+.+-
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~ 110 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 3444556666666666655332222211122333355555543333 334454443221 1122333344555443
Q ss_pred HHHHHHHHHHhCCCCchh---HHhHHHHHHHhcCCCCChhHHHHHhhcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHc
Q 044988 137 GEQVHGRVLASGYCSNVF---IRTNLMNLYLMSGGECGVGCARLLFDDMPAR-SVVSWNSLLKGYVKRGDIDGAWKIFD 211 (538)
Q Consensus 137 a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 211 (538)
+.. +.+.|..++.. -+.+.+...+..|. .+-+.-+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 111 v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 111 VKL----FVKKNWRLMFYGKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 333 33334333321 11233444445555 55555555444332 11122333334445555555554443
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.60 E-value=38 Score=27.78 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHhcCC--CCCcc---hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHH
Q 044988 70 NAHKVFEKTE--NPSTA---IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDE-YTYSFLLSVCARCGLFREGEQVHGR 143 (538)
Q Consensus 70 ~a~~~~~~~~--~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~ 143 (538)
.+.+.|.... +.|+. .|-..+..+ ..++..++.++|..|...|+.-.. .-|......+...|++.+|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344443333 34554 344444433 244577999999999998876554 4677888888999999999999999
Q ss_pred HHHhCCCCchh
Q 044988 144 VLASGYCSNVF 154 (538)
Q Consensus 144 ~~~~~~~~~~~ 154 (538)
-++.+-.|-..
T Consensus 141 GI~~~A~P~~r 151 (202)
T 3esl_A 141 GAENNCRPYNR 151 (202)
T ss_dssp HHHTTCBSHHH
T ss_pred HHHcCCccHHH
Confidence 99988777543
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.96 E-value=49 Score=25.70 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044988 398 AFSLVQNMP-MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIK 475 (538)
Q Consensus 398 A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 475 (538)
+.+.|.... .+.|..-...-+.-.-...+ +..+|..|. .++.-.....|. ..+..+...|++++|.++|+.=.+
T Consensus 54 c~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe-~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 54 LMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYI-AWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344443332 34565544444443333333 667777775 555555556556 777888888888888888888777
Q ss_pred CCCCC
Q 044988 476 MGVRK 480 (538)
Q Consensus 476 ~~~~~ 480 (538)
.+-.|
T Consensus 130 ~~A~P 134 (152)
T 4a1g_A 130 NQAEP 134 (152)
T ss_dssp TTCBS
T ss_pred cCCcc
Confidence 66654
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.11 E-value=68 Score=26.68 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHccCChhHHHHHHhcCC
Q 044988 23 IFSLLQIRNTTKTLFQIHSQIIINGFSQKNY--ILAKLLAFYVTSGYLINAHKVFEKTE 79 (538)
Q Consensus 23 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 79 (538)
.+...+..|+.+.+..+++.+.+.|..++.. .-...+...+..|+.+-+..+++.-.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3455566788877777777776666554432 11223444555667666666665443
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.65 E-value=46 Score=27.66 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=27.8
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHccCChhHHHHHHhcCCC
Q 044988 26 LLQIRNTTKTLFQIHSQIIINGFSQKNY--ILAKLLAFYVTSGYLINAHKVFEKTEN 80 (538)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 80 (538)
.....|+.+ ++..+.+.|..++.. .-...+...++.|+.+-+.-+++.-..
T Consensus 15 ~A~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 15 KATQYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 344566654 344455566554322 122345556677787777777766543
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.12 E-value=70 Score=25.23 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044988 407 MKPNDAVLGSLLLGCRIHNNAELASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRK 480 (538)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 480 (538)
.+.|..-...-+.-.-..++ +..+|..|. .++.-.....|. ..+..+...|++.+|.++|+.=.+.+-.|
T Consensus 59 YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~-~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYI-SWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred hccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44565544444443333344 455666665 556666666566 78888888999999999998888776655
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.72 E-value=27 Score=29.85 Aligned_cols=115 Identities=7% Similarity=-0.066 Sum_probs=56.1
Q ss_pred HhcCCCchHHHHHHHHhHhCCCCCCcch-------HHHHHHHHH--ccCCcHHHHHHHHHHHHhC---------CC-Cch
Q 044988 93 HARSETPEKSVYLYKQMIDKETEPDEYT-------YSFLLSVCA--RCGLFREGEQVHGRVLASG---------YC-SNV 153 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~~~ 153 (538)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +. .|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 3566777777777776666555555332 233333322 5566666666655443311 00 011
Q ss_pred hHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCch----------------hHHHHHHHHHhcCCHHHHHHHHc
Q 044988 154 FIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVV----------------SWNSLLKGYVKRGDIDGAWKIFD 211 (538)
Q Consensus 154 ~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~----------------~~~~li~~~~~~g~~~~A~~~~~ 211 (538)
.-. +.+...+..|+ .+-+.-+++.-..++.. .-.+.+...+..|+.+-+.-+++
T Consensus 92 ~g~-t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 92 RGQ-TALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp ESB-CHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred CCC-CHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 112 23333445566 66666666544333221 12233444455677766666666
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.40 E-value=1.2e+02 Score=27.65 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=36.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCCCCCc--chHHHHHHHHhcCCC--chHHHHHHHHhH
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTENPST--AIWNQMIRGHARSET--PEKSVYLYKQMI 110 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~ 110 (538)
....++.-|...++.++|...++.+..|.. .....+|......++ -+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 456678889999999999999999986653 223334443333332 234445555555
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.30 E-value=69 Score=24.89 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=44.7
Q ss_pred hHHHHHHHHhHhCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh
Q 044988 100 EKSVYLYKQMIDKETEPDEY-TYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVF 154 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 154 (538)
+++.++|..|...|+.-... -|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45899999999988766544 67777888889999999999999999988777543
No 285
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.81 E-value=71 Score=26.52 Aligned_cols=53 Identities=8% Similarity=-0.041 Sum_probs=29.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHccCChhHHHHHHhcCC
Q 044988 23 IFSLLQIRNTTKTLFQIHSQIIINGFSQKNY--ILAKLLAFYVTSGYLINAHKVFEKTE 79 (538)
Q Consensus 23 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 79 (538)
.+...+..|+.+ +++.+.+.|..++.. .-...+...+..|+.+-+..+++.-.
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 344555667754 555566667554432 11223445556788877777776544
No 286
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=53.27 E-value=58 Score=23.12 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044988 197 YVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVAL 256 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 256 (538)
+...|++++|..+.+.+.-||...|-.|-. .+.|-.+++...+.++...| .|....|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344555555555555555555555554432 34555555555555555444 3433333
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.77 E-value=1.1e+02 Score=26.12 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchh--HHHHHH
Q 044988 225 ISGCAQNGKSRQALSLFNEMRRARVGLD---QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVS--LNNALI 299 (538)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 299 (538)
+...+..|+.+-+..+++. .|..++ ....+.+..+ +..++......+.+.+.+. +...+.. ...+.+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPL 223 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSCCHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHc----CCCCCCcCCCCCcHH
Confidence 3344556776555444432 143332 2222233333 3445544445566666665 3322211 011334
Q ss_pred HHHHhCCCHHHHHHHHHh
Q 044988 300 HMYASCGEIEEAYGVFRK 317 (538)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~ 317 (538)
...++.|+.+-+..+++.
T Consensus 224 ~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp HHHHHTTCHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 455677888888888873
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.98 E-value=61 Score=23.03 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044988 197 YVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMRRAR 248 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (538)
+...|++++|..+.+.+.-||...|-.|-. .+.|-.+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555555555555555555544432 23455555555554444433
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=50.89 E-value=78 Score=23.91 Aligned_cols=69 Identities=13% Similarity=-0.059 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 044988 248 RVGLDQVALVAALSACAEIGDL---KLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKMQR 320 (538)
Q Consensus 248 g~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (538)
+-.|+..|-....-++.++.+. ..+..++..+.+. +........-.|.-++.+.|++++|.+..+.+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455666655555566665544 3456666666654 3222333344677777788888888887777665
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.68 E-value=2.1e+02 Score=28.62 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHh
Q 044988 57 KLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHA 94 (538)
Q Consensus 57 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 94 (538)
.+|-.+.|+|++++|.++.++... .-...+...+..|+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 345556677777777776665531 11134555555554
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.37 E-value=95 Score=24.47 Aligned_cols=55 Identities=7% Similarity=0.005 Sum_probs=45.4
Q ss_pred hHHHHHHHHhHhCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh
Q 044988 100 EKSVYLYKQMIDKETEPDEY-TYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVF 154 (538)
Q Consensus 100 ~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 154 (538)
+.+.++|..|...|+--... -|......+...|++..|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44788999999998766544 67777888889999999999999999998788654
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.86 E-value=1.2e+02 Score=32.12 Aligned_cols=52 Identities=6% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044988 193 LLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNGKSRQALSLFNEMR 245 (538)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (538)
++..+...|..+-|.++..-.+.....+ -.+..+|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5667777888888888777776533333 356788889999999999998753
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.64 E-value=99 Score=24.00 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCh---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNV---VSWTTMISGCAQNGK--SRQALSLFNEMRRARVGLDQV 254 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 254 (538)
.+.++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45567777777888888888888765532 233344444444322 456777777777766544433
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.20 E-value=1.7e+02 Score=26.57 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 044988 343 LLTFLGVLSACSHGGFVDEGRQFFECMN 370 (538)
Q Consensus 343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (538)
......++.-|...|+.++|.++++++.
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3556667777777778888888887774
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.15 E-value=1.1e+02 Score=25.42 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=12.8
Q ss_pred hcCCCchHHHHHHHHhHhCCCCCC
Q 044988 94 ARSETPEKSVYLYKQMIDKETEPD 117 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p~ 117 (538)
++.|+.+.+..+++.+.+.|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 455666655555555555444433
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.14 E-value=94 Score=24.86 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHccC-CC---CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCC
Q 044988 197 YVKRGDIDGAWKIFDEM-PH---RNVVSWTTMISGCAQNGK-SRQALSLFNEMRRARVGLD 252 (538)
Q Consensus 197 ~~~~g~~~~A~~~~~~m-~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~ 252 (538)
.+..|+.+.+..+++.- .. ++..-++.+..+. ..++ ...-.++++.+.+.|..|+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 34455666555555543 11 2222233333332 2333 2333455555556665554
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.39 E-value=74 Score=23.86 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHhcCCC--chHHHHHHHHhHhCCCCC
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTENPSTA---IWNQMIRGHARSET--PEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p 116 (538)
....++.-|...|+.++|.+.++++..|... +...+..++-+.+. .+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888899999999999999998765221 23334444444432 356777888887766433
No 298
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=43.23 E-value=92 Score=26.65 Aligned_cols=59 Identities=8% Similarity=-0.049 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCC-------CcchHHHHHHHHH--ccCCcHHHHHHHHHH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMIDKETEP-------DEYTYSFLLSVCA--RCGLFREGEQVHGRV 144 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 144 (538)
-.+.|..+ ++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 13 g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 13 DRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp CHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34444433 55677777666766665544332 2233344444443 246666665555543
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.11 E-value=1.5e+02 Score=24.82 Aligned_cols=137 Identities=9% Similarity=0.045 Sum_probs=82.1
Q ss_pred CccccHHHHHHHHhccCC------hHHHHHHHHHHHHh-CCCCC-hhHHHHHHHHHHc----cCC--------hhHHHHH
Q 044988 15 SKALTTRQIFSLLQIRNT------TKTLFQIHSQIIIN-GFSQK-NYILAKLLAFYVT----SGY--------LINAHKV 74 (538)
Q Consensus 15 ~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~----~g~--------~~~a~~~ 74 (538)
+....-..|..++..... ....+.-|+.-+.. .-..| ...|...|...-. .+. ++.+.+.
T Consensus 27 r~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~ 106 (223)
T 4aez_C 27 KAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTRE 106 (223)
T ss_dssp TTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHH
Confidence 344566677777766443 33344445544443 21223 3566665554332 221 3334444
Q ss_pred HhcCC--CCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 044988 75 FEKTE--NPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEY-TYSFLLSVCARCGLFREGEQVHGRVLASGYCS 151 (538)
Q Consensus 75 ~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 151 (538)
|.... +.|+.-...-|. |+. ..+.+.++|..|...||.-... -|......+...|++.+|.++|+.-++.+-.|
T Consensus 107 F~~~~rYknD~RyLklWl~-Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 107 FVRNPLYKDDVRYLRIWMQ-YVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TTTCGGGTTCHHHHHHHHH-HHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred hcccccccCCHHHHHHHHH-HHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44333 345543333332 222 2367889999999998776544 67788888899999999999999999988777
Q ss_pred chh
Q 044988 152 NVF 154 (538)
Q Consensus 152 ~~~ 154 (538)
-..
T Consensus 184 ~~r 186 (223)
T 4aez_C 184 FLR 186 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.61 E-value=72 Score=27.76 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=63.3
Q ss_pred HhcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHhHHHHHHHhcCCCC
Q 044988 93 HARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVF--IRTNLMNLYLMSGGEC 170 (538)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 170 (538)
.+..|+.+-+..+ .+.|..++...-.+.+...+..|+.+-+..+ .+.|..++.. ...+.+...+..|+
T Consensus 38 A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~-- 107 (285)
T 3kea_A 38 AIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSGN-- 107 (285)
T ss_dssp HHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTC--
T ss_pred HHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcCC--
Confidence 3456665544433 3445444433223344555666776644443 4445444321 11223334445566
Q ss_pred ChhHHHHHhhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 044988 171 GVGCARLLFDDMPAR---SVVSWNSLLKGYVKRGDIDGAWKIFDEMPHR-NVVSWTTMISGCAQNGKSRQALSLFN 242 (538)
Q Consensus 171 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (538)
.+-+.-+++.-..+ +...|.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 108 -~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 108 -MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp -HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 66666555553322 2223234444455566666666666554332 11122233333345555554444443
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.43 E-value=1.1e+02 Score=22.89 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCh---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 044988 190 WNSLLKGYVKRGDIDGAWKIFDEMPHRNV---VSWTTMISGCAQNGK--SRQALSLFNEMRRARVGLDQV 254 (538)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 254 (538)
.+.++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45567777777888888888888765532 233344444444432 356777787777766554433
No 302
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=41.35 E-value=2.2e+02 Score=26.34 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=121.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhH--H
Q 044988 223 TMISGCAQNGKSRQALSLFNEMRRARVGLD-----QVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSL--N 295 (538)
Q Consensus 223 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~ 295 (538)
.++..|...|++.+|..++.++.+.=-+.| ...|..-+..|...+++..+...+............+|.... .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999998876311222 223556666778889999999999887765322112222211 1
Q ss_pred HHHHHHHH-hCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCccHH-HHHHHHHHHHhcccCcHHHHHHHH-HHhhhh
Q 044988 296 NALIHMYA-SCGEIEEAYGVFRKMQRRNTVSWTSMITGFAKQGYAQEA-LLTFLGVLSACSHGGFVDEGRQFF-ECMNQN 372 (538)
Q Consensus 296 ~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~ 372 (538)
..-...+. ..+++..|...|-+.. ..|-..+....- ...|..+ .+..... ..+...++ ......
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~ 250 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAIT 250 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHT
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhccccccc
Confidence 12233445 6888999888876641 122222211100 0122222 2222112 11111222 121122
Q ss_pred cCCCccHHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHH
Q 044988 373 WGIKPRIEHYGCMVDLFSRAGLMDEAFSLVQNMP--MKPNDAVLGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYL 450 (538)
Q Consensus 373 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~ 450 (538)
+ ..|....+..++.+|. .+++.+..++++... ...|......+ ..+.+ .--...+. .-..|-....+.
T Consensus 251 ~-~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L~---~i~~pYsrIsl~ 320 (394)
T 3txn_A 251 Y-SGRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNLC---RIIEPYSRVQVA 320 (394)
T ss_dssp T-CSHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHHH---HHHTTCSEEEHH
T ss_pred c-CCccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHHH---HHhHhhceeeHH
Confidence 2 3566666777777654 567888888877764 34455432111 10000 00011111 223455555466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044988 451 ALVANVYAAAKRWQDVAAVRQKMIKMGV 478 (538)
Q Consensus 451 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 478 (538)
.++..+.- ..+++...+-+|...|.
T Consensus 321 -~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 321 -HVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -HHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 66655443 68899999999987766
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.73 E-value=1.1e+02 Score=27.74 Aligned_cols=25 Identities=4% Similarity=-0.102 Sum_probs=12.8
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCC
Q 044988 125 LSVCARCGLFREGEQVHGRVLASGY 149 (538)
Q Consensus 125 i~~~~~~~~~~~a~~~~~~~~~~~~ 149 (538)
+...+..|+.+-+..+++.....|.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHhccccCC
Confidence 3334455666655555555444443
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.73 E-value=1.5e+02 Score=24.23 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=40.9
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHhccCCCCCcc
Q 044988 223 TMISGCA---QNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDL-----KLGKWIHSYVEENFSVGREPVL 291 (538)
Q Consensus 223 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~ 291 (538)
-+|+++. +..+.+.|+-++-+|.+.| .|....=..++-+....|.- ..|...++..... |.|.-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i----G~PE~ 87 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL----GLPEA 87 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH----CTTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh----CCCHH
Confidence 3455554 4589999999999999999 77665555666666554432 3344455555555 55543
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.08 E-value=93 Score=26.32 Aligned_cols=85 Identities=13% Similarity=-0.018 Sum_probs=39.1
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhC--CCCC----CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHH
Q 044988 89 MIRGHARSETPEKSVYLYKQMIDK--ETEP----DEYTYSFLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNL 162 (538)
Q Consensus 89 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (538)
-++.+....++++|.+++++..+. ++++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356667777777777777766431 2221 1122222333323222223333333333 21 3334444445555
Q ss_pred HHhcCCCCChhHHHHHh
Q 044988 163 YLMSGGECGVGCARLLF 179 (538)
Q Consensus 163 ~~~~g~~~~~~~a~~~~ 179 (538)
+.+.|+ .+.|..+|
T Consensus 101 L~rLg~---~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGL---PEQALDLF 114 (235)
T ss_dssp HHHTTC---HHHHHHHH
T ss_pred HHHCCC---hhHHHHHH
Confidence 556666 55655555
No 306
>2y8t_B RON2, rhoptry NECK protein 2; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8s_B*
Probab=40.05 E-value=20 Score=18.61 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHHcCcccCCcccccCC
Q 044988 516 ITMQAMQEGYKPDISELFLGI 536 (538)
Q Consensus 516 ~~~~m~~~~~~p~~~~~~~~~ 536 (538)
+.++|.+-|-.|-.++|+..|
T Consensus 2 ivqhmediggappvscvtnei 22 (37)
T 2y8t_B 2 IVQHMEDIGGAPPVSCVTNEI 22 (37)
T ss_dssp HHHHHHHTTCCCCCSEEEETT
T ss_pred HHHHHHHcCCCCChhhhhhhh
Confidence 456899999999999998755
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.05 E-value=1.9e+02 Score=26.80 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=75.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHccCChhHHHHHHhcCCCCC---cchHHHHHHHHhcCC
Q 044988 23 IFSLLQIRNTTKTLFQIHSQIIINGFSQKNY--ILAKLLAFYVTSGYLINAHKVFEKTENPS---TAIWNQMIRGHARSE 97 (538)
Q Consensus 23 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~ 97 (538)
.+...+..|+.+ +.+.+.+.|..++.. .....+...+..|+.+-+..+++.-..++ ...++.| ...++.|
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHT
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCC
Confidence 344455566654 444444556555432 12234445556777777777766543322 2222222 2234455
Q ss_pred CchHHHHHHHHhHhCCCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch--hHHhHHHHHHHhcCCCCChh
Q 044988 98 TPEKSVYLYKQMIDKETEPDEYT--YSFLLSVCARCGLFREGEQVHGRVLASGYCSNV--FIRTNLMNLYLMSGGECGVG 173 (538)
Q Consensus 98 ~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~ 173 (538)
+.+-+ +.+.+.|..|+... -.+.+...+..|+.+.+..+++ .+..++. ....+.+...+..|+ .+
T Consensus 92 ~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~---~~ 160 (437)
T 1n11_A 92 HTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGK---VR 160 (437)
T ss_dssp CHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTC---HH
T ss_pred CHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCC---HH
Confidence 54433 33333344433221 1122333445565554444332 3322211 111123334455566 66
Q ss_pred HHHHHhhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHccC
Q 044988 174 CARLLFDDMPARSV---VSWNSLLKGYVKRGDIDGAWKIFDEM 213 (538)
Q Consensus 174 ~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 213 (538)
-+.-+++.-..++. ... +.+...+..|+.+-+.-+++.-
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g 202 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVKLLLPRG 202 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHHHHHHHGGGT
T ss_pred HHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCC
Confidence 65555554433211 111 2233444556666655555543
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.99 E-value=1.1e+02 Score=27.49 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=52.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHccCChhHHHHHHhcCCCCCc-chHHHHHHHHhcCCC
Q 044988 22 QIFSLLQIRNTTKTLFQIHSQIIINGFSQKNY--ILAKLLAFYVTSGYLINAHKVFEKTENPST-AIWNQMIRGHARSET 98 (538)
Q Consensus 22 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~ 98 (538)
+.+...+..|+.+. ++.+++.|..++.. .-...+...+..|+.+-+.-+++.-..++. .-++. +...+..|+
T Consensus 22 t~L~~Aa~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDE----VRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTC
T ss_pred CHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCC
Confidence 44555556777654 44555667655432 122345556678888888888877654443 22333 334466788
Q ss_pred chHHHHHHHHhHhCCCCC
Q 044988 99 PEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p 116 (538)
.+-+..+++.....|..+
T Consensus 97 ~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHhccccCCCH
Confidence 877777777654434333
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.28 E-value=2.3e+02 Score=25.10 Aligned_cols=217 Identities=10% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHH
Q 044988 222 TTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHM 301 (538)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (538)
..+|.-|...|+.++|...++++......|.......-...=.+...-+.+-.++..+... .-+...+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~-----~ls~~~i~~gf~~l 81 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGT-----VMSTTDVEKSFDKL 81 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-----TBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q ss_pred HHhCCCHHH-------------HHHHHHhcCCCCcch-------------HHHHHHHHHhcCCccHHH------------
Q 044988 302 YASCGEIEE-------------AYGVFRKMQRRNTVS-------------WTSMITGFAKQGYAQEAL------------ 343 (538)
Q Consensus 302 ~~~~g~~~~-------------a~~~~~~m~~~~~~~-------------~~~li~~~~~~~~~~~a~------------ 343 (538)
+....+..- |..+.+....|.... --.....+.......+-.
T Consensus 82 l~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 82 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSC
T ss_pred HHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCC
Q ss_pred -----HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCcc---HHHHHHHHHHhhhcCCh--HHHHHHHHhCCCCCCHHH
Q 044988 344 -----LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPR---IEHYGCMVDLFSRAGLM--DEAFSLVQNMPMKPNDAV 413 (538)
Q Consensus 344 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~ 413 (538)
.....++.-|...|+.++|.+.++++. .|. ..+...+..++-+.++. +...+++..+. +.+..+
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~-----~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~-~~~~ls 235 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE-----VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLW-KSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC-----CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH-HHCSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC-----CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHH-HCCCCC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhccCCCCcccHHHHHHHHHHhc
Q 044988 414 LGSLLLGCRIHNNAELASQVAQKLVAEIDPEQAAGYLALVANVYAAA 460 (538)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 460 (538)
-..+..++.+ +++.+ ..+.-|.|.++. .++....++
T Consensus 236 ~~q~~~Gf~~---------vl~~l-~Dl~lDiP~A~~-~la~~v~~a 271 (307)
T 2zu6_B 236 VDQMKRGYER---------IYNEI-PDINLDVPHSYS-VLERFVEEC 271 (307)
T ss_dssp HHHHHHHHHH---------HHHHH-HHHHHHCTTHHH-HHHHHHHHH
T ss_pred HHHHHHHHHH---------HHHhc-cHhhcccccHHH-HHHHHHHHH
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.62 E-value=1.8e+02 Score=23.77 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=10.6
Q ss_pred HHccCChhHHHHHHhcCC
Q 044988 62 YVTSGYLINAHKVFEKTE 79 (538)
Q Consensus 62 ~~~~g~~~~a~~~~~~~~ 79 (538)
.++.|+.+....+++.-.
T Consensus 16 A~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHcCC
Confidence 445666666666665443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.54 E-value=62 Score=25.16 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHhcCCC--chHHHHHHHHhHhCCCCC
Q 044988 54 ILAKLLAFYVTSGYLINAHKVFEKTENPSTA---IWNQMIRGHARSET--PEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 54 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p 116 (538)
..+.++.-|...|+.++|.+.++++..|... +...+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888899999999999999998766221 23334444444322 356777888887666433
No 312
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.15 E-value=1.3e+02 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=22.6
Q ss_pred HHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHcc
Q 044988 161 NLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLKGYVKRGDIDGAWKIFDE 212 (538)
Q Consensus 161 ~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 212 (538)
...+..|+ .+-+.-+++. ..+ |..-.+ .+...+..|+.+-+.-+++.
T Consensus 106 ~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 106 HLAVQEGH---TAVVSFLAAE-SDLHRRDARGLT-PLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCC-HHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHhh
Confidence 33445565 6655555555 322 222222 23334456666666655543
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.13 E-value=2e+02 Score=24.03 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHch-hccCCCCcccHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 044988 429 LASQVAQKLV-AEIDPEQAAGYLALVANVYAAAKRWQDVAAVRQKMIKMGVRK 480 (538)
Q Consensus 429 ~A~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 480 (538)
.+..+|..|. .++.-.....|. ..+..+...|++++|.++|+.=.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe-~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYE-EYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4456666665 555555556566 77788888888888888888877665544
No 314
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.06 E-value=40 Score=21.15 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=24.4
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHH-HccC
Q 044988 99 PEKSVYLYKQMIDKETEPDEYTYSFLLSVC-ARCG 132 (538)
Q Consensus 99 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~ 132 (538)
.++|.+.|.+|++..-.++.-||...++.+ +...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 467888888887654456667888888887 5543
No 315
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.39 E-value=2e+02 Score=23.65 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHh
Q 044988 220 SWTTMISGCA---QNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGD-----LKLGKWIHSYVEEN 282 (538)
Q Consensus 220 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~ 282 (538)
.+--+|+++. +..+.+.|+-++-+|.+.|-.|....=..++-+....|. +..|...++.....
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 104 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV 104 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 3344555554 458999999999999999988876666666666654443 22344444444444
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.19 E-value=2.7e+02 Score=25.01 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCChH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 044988 191 NSLLKGYVKRGDIDGAWKIFDEMPHRNVV---SWTTMISGCAQ-NGKSRQALSLFNEMRRARVGLDQVA---LVAALSAC 263 (538)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~ 263 (538)
..++.-|...|+.++|.+.++++..|... +...+..++-+ ...-+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred HccC-ChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHH
Q 044988 264 AEIG-DLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGEIEEAYGVF 315 (538)
Q Consensus 264 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (538)
-... |+..|...+..+....-..|..+....+..+...+...|........+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~v 147 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEI 147 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHH
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.61 E-value=2.4e+02 Score=27.15 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=16.4
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhH
Q 044988 85 IWNQMIRGHARSETPEKSVYLYKQMI 110 (538)
Q Consensus 85 ~~~~li~~~~~~~~~~~a~~~~~~m~ 110 (538)
.+|.+++.|...+.++.|..+..+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 46666666666666666666666553
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.28 E-value=1.6e+02 Score=24.23 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHccCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044988 195 KGYVKRGDIDGAWKIFDEMPHR---NVVSWTTMISGCAQNGKSRQALSLFNEMRRARV 249 (538)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (538)
...+..|+.+-+.-+++.-..+ |..-. +-+...+..|+.+-+..+++.+.+.|.
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3344456666665555543322 11112 223334556676666666666666654
No 319
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.97 E-value=1.2e+02 Score=20.92 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCCCc
Q 044988 36 LFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSETP 99 (538)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 99 (538)
...+++.+.+.|+- +..-+..+-. .....+.|..+++.++......|..++.++.+.+..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 34567777776644 3333333322 356677888888888777777888888887776653
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.77 E-value=1.4e+02 Score=22.76 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=25.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 244 MRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 244 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..+...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~----~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK----FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG----CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh----CCCCChhhHHHHHHHHHHCCC
Confidence 4445555544332 2223333333444455555555544 333232222244455555553
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.75 E-value=2.5e+02 Score=26.56 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHhcCCCchHHHHHH
Q 044988 30 RNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTEN---PSTAIWNQMIRGHARSETPEKSVYLY 106 (538)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 106 (538)
..+++.|. ....+.|++-....|..-.+.+...|++++|.++--..+. .+..|.+.+-.+=...|...-.+..|
T Consensus 342 l~n~~lA~---~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLAL---RMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHH---HHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHH---HHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 35555443 3445677776677788888888999999999998877764 45555555555445567777788888
Q ss_pred HHhHhCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 044988 107 KQMIDKETEPDEYTYSFLLSVCARCGLFREGEQV 140 (538)
Q Consensus 107 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 140 (538)
..+.+.| +.|..-=.-+++.-..+|+.+..++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 8888776 55554334445555555655544433
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.05 E-value=1.3e+02 Score=19.99 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=37.9
Q ss_pred HHhHhCCCCCCcchHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 107 KQMIDKETEPDEYTYSFLLSVCARCG-LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 107 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676665544 44555555554 556777888888777655566666666666666664
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.40 E-value=74 Score=22.35 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=13.7
Q ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHcCC
Q 044988 203 IDGAWKIFDEMPHRNVVSWTTMISGCAQNGK 233 (538)
Q Consensus 203 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~ 233 (538)
.+.|.++++.++.....+|..++.++...|+
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 3444444444444444444444444443333
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.30 E-value=61 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=28.2
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDGAWK 208 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 208 (538)
.+.|.++++.++.+...+|..++.++...|+..-|.-
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 7788888888888888888888888877676665543
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.13 E-value=2.1e+02 Score=22.43 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=40.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHccCChHHHHHHHHHHHHhc
Q 044988 228 CAQNGKSRQALSLFNEMRRARVGL--DQVALVAALS-A-----CAEIGDLKLGKWIHSYVEENF 283 (538)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~~~ 283 (538)
+.+.|++-+|-++++..-...-.| ....|..||. . ..+.|+...|..++......+
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345599999999999987765555 5566666766 2 235788888888888877653
No 326
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.09 E-value=2.8e+02 Score=23.61 Aligned_cols=48 Identities=4% Similarity=-0.196 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHhcCC
Q 044988 50 QKNYILAKLLAFYVTSGYLINAHKVFEKTENPSTAIWNQMIRGHARSE 97 (538)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 97 (538)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 344444444455555554332223333333344433333344444443
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.90 E-value=2.5e+02 Score=22.90 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044988 223 TMISGCA---QNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIG 267 (538)
Q Consensus 223 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 267 (538)
-+|+++. +..+.+.|+-++-+|.+.|-.|....=..++-+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4555554 45899999999999999998776655555555544333
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.69 E-value=2.5e+02 Score=22.89 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=29.7
Q ss_pred hHHHHHHHHhCCCCCCH--HHHH-----HHHHHHHhcCCHHHHHHHHHHchhccCCCCcc
Q 044988 395 MDEAFSLVQNMPMKPND--AVLG-----SLLLGCRIHNNAELASQVAQKLVAEIDPEQAA 447 (538)
Q Consensus 395 ~~~A~~~~~~~~~~p~~--~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~p~~~~ 447 (538)
++.|+.+|+.+...-|. .... ..+..|.+.|.+++|.+++++. .+-.+++..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~-f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI-FGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-C-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH-hcCCCCchH
Confidence 56677777777533331 1112 2234588999999999999987 444444444
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.43 E-value=2.5e+02 Score=22.89 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHHHH---hcCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHHccCC-----cHHHHHHHHHHHHhCCCC
Q 044988 89 MIRGH---ARSETPEKSVYLYKQMIDKETEPDEYTYSFLLSVCARCGL-----FREGEQVHGRVLASGYCS 151 (538)
Q Consensus 89 li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 151 (538)
+|+++ .+.++++.|+-.+-+|++.| .|.-..-..++-+.-.-|. ...|...++.....|.+.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 44444 56789999999999999998 6655555556666555553 234555666666677543
No 330
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.36 E-value=2.7e+02 Score=23.21 Aligned_cols=54 Identities=9% Similarity=-0.081 Sum_probs=28.8
Q ss_pred HHhcCCCchHHHHHHHHhHhCCCCCCc-------chHHHHHHHHHcc---CCcHHHHHHHHHHHH
Q 044988 92 GHARSETPEKSVYLYKQMIDKETEPDE-------YTYSFLLSVCARC---GLFREGEQVHGRVLA 146 (538)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 146 (538)
..++.|+.+....+++.+.+.|..++. .-.+.|.. .+.. |+.+-+..+++.-..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCc
Confidence 345667777666666666666655443 22233333 3333 666666655554433
No 331
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.94 E-value=2.4e+02 Score=24.25 Aligned_cols=213 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHccCChhHHHH--------------HHhcCCCCCcchHHHHHHHHhcCCCchHHHHHHHHhHhCCCCC
Q 044988 51 KNYILAKLLAFYVTSGYLINAHK--------------VFEKTENPSTAIWNQMIRGHARSETPEKSVYLYKQMIDKETEP 116 (538)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~a~~--------------~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 116 (538)
+.......+...+..|+.++..+ +-......+..-++.|..+..... .++++.+.+.|..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-----QLSLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-----HHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-----HHHHHHHHHCCCCC
Q ss_pred CcchHH--HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCCCChhHHHHHhhcCCCCCchhH-HHH
Q 044988 117 DEYTYS--FLLSVCARCGLFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGGECGVGCARLLFDDMPARSVVSW-NSL 193 (538)
Q Consensus 117 ~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~~~~~~-~~l 193 (538)
+..... +.+...+..|+.+-+..+++. ...+........+.+...+..|. .+-+..+++.-...+.... .+.
T Consensus 86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~g~t~ 160 (285)
T 3d9h_A 86 NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGS---WDCVNLLLQHGASVQPESDLASP 160 (285)
T ss_dssp CEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSCTTSCH
T ss_pred CCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCCCCCCH
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChH
Q 044988 194 LKGYVKRGDIDGAWKIFDEMPHRNVV--SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVALV-AALSACAEIGDLK 270 (538)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~~ 270 (538)
+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+. ++++.+.+.|..++..... +.+...+..|+.+
T Consensus 161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~ 236 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR----ACVKKLLESGADVNQGKGQDSPLHAVVRTASEE 236 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH
Q ss_pred HHHHHHH
Q 044988 271 LGKWIHS 277 (538)
Q Consensus 271 ~a~~~~~ 277 (538)
.+..+++
T Consensus 237 ~v~~Ll~ 243 (285)
T 3d9h_A 237 LACLLMD 243 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 332
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.62 E-value=2.4e+02 Score=27.15 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhhcCCCccH--HHH-HHHHHHhhhcCChHHHHHHHHhC
Q 044988 344 LTFLGVLSACSHGGFVDEGRQFFECMNQNWGIKPRI--EHY-GCMVDLFSRAGLMDEAFSLVQNM 405 (538)
Q Consensus 344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 405 (538)
..++.+++.|...+.++.|..+..+..--....+|. ..| --+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455666666666666666666666553100001111 111 12344455566666666555543
No 333
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.29 E-value=3e+02 Score=24.52 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=60.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHH----HhCCCHHHHHHH
Q 044988 239 SLFNEMRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMY----ASCGEIEEAYGV 314 (538)
Q Consensus 239 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~ 314 (538)
+++..+.+.|+.|...++..++..+.+.=.++.+.++|+.+... |...-..+.-+++..+ .++.+.++....
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~----g~~~l~~valaiL~~~~~~ll~~~~~~~il~~ 284 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ----GTEVIFKVALSLLGSHKPLILQHENLETIVDF 284 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC----CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 56777788899999999999999888888899999999999887 6553333333333322 234578888888
Q ss_pred HHh-cCCCCcchHHHHH
Q 044988 315 FRK-MQRRNTVSWTSMI 330 (538)
Q Consensus 315 ~~~-m~~~~~~~~~~li 330 (538)
++. +...+......++
T Consensus 285 l~~~~p~~~~~di~~li 301 (331)
T 3qye_A 285 IKSTLPNLGLVQMEKTI 301 (331)
T ss_dssp HHHTTTCCCHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHH
Confidence 877 3333333333343
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.70 E-value=2e+02 Score=22.06 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=24.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhCCC
Q 044988 244 MRRARVGLDQVALVAALSACAEIGDLKLGKWIHSYVEENFSVGREPVLVSLNNALIHMYASCGE 307 (538)
Q Consensus 244 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (538)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..+...-++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~----~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK----DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH----STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh----CCCCCHhhHHHHHHHHHHCCc
Confidence 4445554443332 2233333334445555555555554 333333222244455555553
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.63 E-value=1.3e+02 Score=18.86 Aligned_cols=24 Identities=8% Similarity=-0.152 Sum_probs=15.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC
Q 044988 458 AAAKRWQDVAAVRQKMIKMGVRKP 481 (538)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~~~ 481 (538)
...|+.+.|+..+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345677777777777776655554
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.48 E-value=1.8e+02 Score=22.73 Aligned_cols=53 Identities=6% Similarity=-0.167 Sum_probs=38.9
Q ss_pred hcCCCchHHHHHHHHhHhCCCCC--CcchHHHHHH-H-----HHccCCcHHHHHHHHHHHH
Q 044988 94 ARSETPEKSVYLYKQMIDKETEP--DEYTYSFLLS-V-----CARCGLFREGEQVHGRVLA 146 (538)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 146 (538)
...|++-+|.++|+..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44599999999999987654344 4456777777 3 2457899999999888866
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.44 E-value=95 Score=23.20 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChh
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLI 69 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 69 (538)
..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3566777777777889999999998887777777777788888887543
No 338
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.11 E-value=2.5e+02 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=10.2
Q ss_pred HHHHHccCChhHHHHHHhc
Q 044988 59 LAFYVTSGYLINAHKVFEK 77 (538)
Q Consensus 59 ~~~~~~~g~~~~a~~~~~~ 77 (538)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334455666666655544
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.02 E-value=3.2e+02 Score=23.23 Aligned_cols=82 Identities=11% Similarity=-0.048 Sum_probs=31.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044988 185 RSVVSWNSLLKGYVKRGDIDGAWKIFDEMPHRNVVSWTTMISGCAQNG-KSRQALSLFNEMRRARVGLDQVALVAALSAC 263 (538)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 263 (538)
++...-...+.++...|+.+....+...+..++...-...+.++.+.+ ....+...+..+.+ .++...-...+.++
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGL 216 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 344444444444444444322222233333444443333333333333 12333333333332 23444444444555
Q ss_pred HccCCh
Q 044988 264 AEIGDL 269 (538)
Q Consensus 264 ~~~~~~ 269 (538)
.+.|+.
T Consensus 217 ~~~~~~ 222 (280)
T 1oyz_A 217 SYRKDK 222 (280)
T ss_dssp HHTTCG
T ss_pred HHhCCH
Confidence 555543
No 340
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.98 E-value=1.6e+02 Score=24.79 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhH-------HHHHHHHHH--ccCChhHHHHHHhc
Q 044988 24 FSLLQIRNTTKTLFQIHSQIIINGFSQKNYI-------LAKLLAFYV--TSGYLINAHKVFEK 77 (538)
Q Consensus 24 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 77 (538)
+....+.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4444567788877778887777776655332 122322221 45666666555543
No 341
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.42 E-value=4.2e+02 Score=24.38 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=119.2
Q ss_pred HHHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHhcCCCchHHHHHHHHhHhCCCCCCcc--hHHHHHHHHHccC
Q 044988 58 LLAFYVTSGYLINAHKVFEKTENPSTA---IWNQMIRGHARSETPEKSVYLYKQMIDKETEPDEY--TYSFLLSVCARCG 132 (538)
Q Consensus 58 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~ 132 (538)
.+..-+..|+.+-+..+++.-..++.. ..+ .+...++.|+.+-+.-++ +.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 455566788988888888765544332 222 333445667765444444 344444322 1123344455667
Q ss_pred CcHHHHHHHHHHHHhCCCCchh--HHhHHHHHHHhcCCCCChhHHHHHhhcCCCC---CchhHHHHHHHHHhcCCHHHHH
Q 044988 133 LFREGEQVHGRVLASGYCSNVF--IRTNLMNLYLMSGGECGVGCARLLFDDMPAR---SVVSWNSLLKGYVKRGDIDGAW 207 (538)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 207 (538)
+.+- .+.+.+.|..++.. ...+.+...+..|+ .+.+..+++.-... +...+ +.+...+..|+.+-+.
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGH---VETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAE 163 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHH
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHH
Confidence 7654 44445556544422 12234455567788 88888887765432 22222 2345556778888888
Q ss_pred HHHccCCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHHh
Q 044988 208 KIFDEMPHRNVV---SWTTMISGCAQNGKSRQALSLFNEMRRARVGLDQVAL--VAALSACAEIGDLKLGKWIHSYVEEN 282 (538)
Q Consensus 208 ~~~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~ 282 (538)
-+++.-..++.. ..+ .+...+..|+.+- ++.+.+.|..|+.... ...+...+..|+.+.+..+++.-...
T Consensus 164 ~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLT-PLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp HHHHTTCCTTCCCSSCCC-HHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 777764433221 122 2334455666543 3344445544432111 12233445667766655544321110
Q ss_pred ccCCCCCcchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044988 283 FSVGREPVLVSLNNALIHMYASCGEIEEAYGVFRKM 318 (538)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (538)
...+..-. +.+...+..|+.+-+.-+++.-
T Consensus 239 -----~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 239 -----NAESVQGV-TPLHLAAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp -----TCCCTTCC-CHHHHHHHTTCHHHHHHHHTTT
T ss_pred -----CCCCCCCC-CHHHHHHHCCCHHHHHHHHhcC
Confidence 01111111 2233445677777777666653
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.32 E-value=98 Score=23.47 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=38.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCChh
Q 044988 21 RQIFSLLQIRNTTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGYLI 69 (538)
Q Consensus 21 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 69 (538)
..++..+...+..-.|.++++.+.+.+...+..+.-..++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4567777777777889999999998887778877777788888887543
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.95 E-value=2e+02 Score=22.44 Aligned_cols=68 Identities=9% Similarity=0.001 Sum_probs=46.7
Q ss_pred hHHHHHHHH-hHhCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh--CCCCchhHHhHHHHHHHhcCC
Q 044988 100 EKSVYLYKQ-MIDKETEPDEYTYSFLLSVCARCGLFREGEQVHGRVLAS--GYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 100 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 168 (538)
+.+++-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 445554444 4556777754 3455667777777888999999999887 666666666666677777776
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.33 E-value=2.3e+02 Score=21.23 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=38.9
Q ss_pred HhHhCCCCCCcchHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 044988 108 QMIDKETEPDEYTYSFLLSVCARCG-LFREGEQVHGRVLASGYCSNVFIRTNLMNLYLMSGG 168 (538)
Q Consensus 108 ~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 168 (538)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3566776665543 34445555555 677888888888887766666666666677776665
No 345
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.27 E-value=1.7e+02 Score=21.95 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHcc
Q 044988 196 GYVKRGDIDGAWKIFDE 212 (538)
Q Consensus 196 ~~~~~g~~~~A~~~~~~ 212 (538)
..+..|+.+-+.-+++.
T Consensus 107 ~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHhc
Confidence 33455666666666655
No 346
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.16 E-value=3.2e+02 Score=22.17 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=10.3
Q ss_pred HHHHhccCChHHHHHHHH
Q 044988 24 FSLLQIRNTTKTLFQIHS 41 (538)
Q Consensus 24 l~~~~~~~~~~~a~~~~~ 41 (538)
+...+..|+.+....++.
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 445556666665555554
No 347
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.11 E-value=2e+02 Score=19.79 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=18.0
Q ss_pred hhHHHHHhhcCCCCCchhHHHHHHHHHhcCCHHH
Q 044988 172 VGCARLLFDDMPARSVVSWNSLLKGYVKRGDIDG 205 (538)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (538)
.+.|..+++.+..++...|..++.++.+.+...-
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4555555555555555555555555555444333
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.95 E-value=6.1e+02 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHH
Q 044988 121 YSFLLSVCARCGLFREGEQVHGRV 144 (538)
Q Consensus 121 ~~~li~~~~~~~~~~~a~~~~~~~ 144 (538)
.-.+|-.|.+.|++++|.++.++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334555667777777777766544
No 349
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.42 E-value=1.8e+02 Score=24.49 Aligned_cols=31 Identities=13% Similarity=-0.218 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 044988 408 KPNDAVLGSLLLGCRIHNNAELASQVAQKLV 438 (538)
Q Consensus 408 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (538)
.++.......+..+.+.|+.++|.++|=+.+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 4556666666777788888888887776655
No 350
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.32 E-value=1.3e+02 Score=23.22 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHhcCCCc
Q 044988 41 SQIIINGFSQKNYILAKLLAFYVTSGYLINAHKVFEKTE----NPSTAIWNQMIRGHARSETP 99 (538)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 99 (538)
+.+.+.|+.+++. -..++..+...+..-.|.++++.+. ..+..|--..+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445555554443 2234444444445556666665553 23333433344455555543
No 351
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.13 E-value=2.1e+02 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHHHc
Q 044988 420 GCRIHNNAELASQVAQKL 437 (538)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~ 437 (538)
.+...|+.+.|..+++++
T Consensus 136 ~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 136 TYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 344444555444444444
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.05 E-value=1.5e+02 Score=22.06 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044988 223 TMISGCAQNGKSRQALSLFNEMRRARVGLDQVALVAALSACAEIGD 268 (538)
Q Consensus 223 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 268 (538)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555566667777888887777666677776666666666554
No 353
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.97 E-value=1.2e+02 Score=22.88 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 044988 22 QIFSLLQIRN-TTKTLFQIHSQIIINGFSQKNYILAKLLAFYVTSGY 67 (538)
Q Consensus 22 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 67 (538)
.++..+...+ ..-.|.++++.+.+.+...+..+.-..++.+...|-
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455555554 555666677766666655555555555666665554
No 354
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.45 E-value=3.4e+02 Score=21.82 Aligned_cols=52 Identities=6% Similarity=-0.104 Sum_probs=27.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHccCChhHHHHHHhcC
Q 044988 23 IFSLLQIRNTTKTLFQIHSQIIINGFSQKNYI--LAKLLAFYVTSGYLINAHKVFEKT 78 (538)
Q Consensus 23 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 78 (538)
.+...+..++.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 28 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 28 ALHLAARYSRSD----AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred hHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344445666654 4455555665544321 122344455667776666666543
Done!