Query 044989
Match_columns 115
No_of_seqs 127 out of 1236
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 2.4E-19 5.2E-24 114.6 10.5 89 7-96 68-156 (160)
2 KOG0027 Calmodulin and related 99.8 6.9E-18 1.5E-22 107.9 10.0 92 4-96 54-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.7 2.5E-16 5.5E-21 99.6 10.0 92 5-97 80-171 (172)
4 PTZ00183 centrin; Provisional 99.6 5.9E-15 1.3E-19 94.1 11.0 91 5-96 64-154 (158)
5 KOG0031 Myosin regulatory ligh 99.6 8.3E-15 1.8E-19 92.2 10.6 92 5-97 75-166 (171)
6 PTZ00184 calmodulin; Provision 99.6 1.3E-14 2.8E-19 91.4 10.8 90 5-95 58-147 (149)
7 KOG0034 Ca2+/calmodulin-depend 99.6 5.3E-14 1.1E-18 92.5 10.1 95 6-101 78-179 (187)
8 cd05022 S-100A13 S-100A13: S-1 99.5 2.8E-14 6E-19 83.6 7.2 67 30-97 7-76 (89)
9 PF13499 EF-hand_7: EF-hand do 99.5 5.8E-14 1.2E-18 77.8 7.0 62 32-94 1-66 (66)
10 cd05027 S-100B S-100B: S-100B 99.5 3.4E-13 7.4E-18 78.9 8.3 66 30-96 7-79 (88)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.5 5.7E-13 1.2E-17 87.9 8.8 92 4-96 74-175 (193)
12 KOG0037 Ca2+-binding protein, 99.4 1.9E-12 4.1E-17 85.8 10.1 85 5-97 105-189 (221)
13 KOG0036 Predicted mitochondria 99.4 2.7E-12 5.8E-17 91.9 9.2 88 2-96 59-146 (463)
14 KOG0030 Myosin essential light 99.4 3.1E-12 6.6E-17 79.5 8.0 85 9-95 64-150 (152)
15 cd05025 S-100A1 S-100A1: S-100 99.4 3.7E-12 8.1E-17 75.1 8.0 68 30-97 8-81 (92)
16 cd05031 S-100A10_like S-100A10 99.4 3.9E-12 8.4E-17 75.3 7.8 66 30-96 7-79 (94)
17 cd05026 S-100Z S-100Z: S-100Z 99.4 4.8E-12 1E-16 74.8 8.0 66 31-97 10-82 (93)
18 KOG0027 Calmodulin and related 99.4 6.1E-12 1.3E-16 80.4 9.0 70 28-98 5-74 (151)
19 cd05029 S-100A6 S-100A6: S-100 99.4 5.4E-12 1.2E-16 73.8 8.0 66 31-97 10-80 (88)
20 smart00027 EH Eps15 homology d 99.3 1E-11 2.3E-16 73.7 7.7 67 27-96 6-72 (96)
21 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.6E-11 3.5E-16 81.0 9.0 89 7-96 40-128 (193)
22 cd00213 S-100 S-100: S-100 dom 99.3 1.2E-11 2.6E-16 72.2 6.9 68 29-97 6-80 (88)
23 cd00052 EH Eps15 homology doma 99.3 1.5E-11 3.3E-16 67.8 6.9 60 34-96 2-61 (67)
24 COG5126 FRQ1 Ca2+-binding prot 99.3 2E-11 4.4E-16 78.3 7.6 69 27-97 16-84 (160)
25 PF13833 EF-hand_8: EF-hand do 99.3 2.1E-11 4.6E-16 64.9 6.3 52 44-96 1-53 (54)
26 KOG0038 Ca2+-binding kinase in 99.3 4.9E-11 1.1E-15 74.9 7.9 91 6-96 83-177 (189)
27 cd05023 S-100A11 S-100A11: S-1 99.2 8.2E-11 1.8E-15 69.0 8.1 67 30-97 8-81 (89)
28 cd00051 EFh EF-hand, calcium b 99.2 6.2E-11 1.3E-15 63.5 6.8 61 33-94 2-62 (63)
29 PTZ00183 centrin; Provisional 99.2 3.9E-10 8.5E-15 71.7 11.1 95 4-100 27-122 (158)
30 PTZ00184 calmodulin; Provision 99.2 5.3E-10 1.2E-14 70.3 10.6 96 4-100 21-116 (149)
31 cd00252 SPARC_EC SPARC_EC; ext 99.2 3E-10 6.4E-15 69.6 7.7 60 30-94 47-106 (116)
32 PF14658 EF-hand_9: EF-hand do 99.1 3.5E-10 7.5E-15 62.2 6.6 62 35-96 2-64 (66)
33 cd05030 calgranulins Calgranul 99.1 1.3E-09 2.8E-14 63.7 7.2 66 30-96 7-79 (88)
34 KOG0028 Ca2+-binding protein ( 99.0 2.2E-09 4.9E-14 68.3 6.9 63 32-95 34-96 (172)
35 KOG0030 Myosin essential light 98.9 4.6E-09 1E-13 65.4 6.4 71 26-97 6-78 (152)
36 KOG0041 Predicted Ca2+-binding 98.9 8.5E-09 1.8E-13 68.0 7.9 76 27-103 95-170 (244)
37 PLN02964 phosphatidylserine de 98.9 4E-08 8.8E-13 75.1 10.5 64 33-97 181-244 (644)
38 KOG0031 Myosin regulatory ligh 98.8 2.8E-08 6E-13 63.0 7.1 64 27-95 28-91 (171)
39 cd05024 S-100A10 S-100A10: A s 98.8 9.5E-08 2E-12 56.0 8.2 66 30-97 7-77 (91)
40 PF13833 EF-hand_8: EF-hand do 98.7 9.6E-08 2.1E-12 50.6 6.3 52 7-59 1-53 (54)
41 KOG0377 Protein serine/threoni 98.7 1.1E-07 2.4E-12 69.3 8.3 96 4-99 509-618 (631)
42 KOG4223 Reticulocalbin, calume 98.7 5.5E-08 1.2E-12 68.1 6.1 88 4-92 210-301 (325)
43 PF00036 EF-hand_1: EF hand; 98.7 3.8E-08 8.3E-13 45.8 3.5 27 33-59 2-28 (29)
44 PLN02964 phosphatidylserine de 98.6 2.8E-07 6.1E-12 70.6 8.1 66 28-98 140-209 (644)
45 PF00036 EF-hand_1: EF hand; 98.6 8.8E-08 1.9E-12 44.6 3.3 28 69-96 1-28 (29)
46 PF13405 EF-hand_6: EF-hand do 98.6 1.1E-07 2.4E-12 44.8 3.6 30 32-61 1-31 (31)
47 PF14788 EF-hand_10: EF hand; 98.6 3.6E-07 7.8E-12 47.7 5.4 49 47-96 1-49 (51)
48 KOG0034 Ca2+/calmodulin-depend 98.5 2.2E-06 4.8E-11 56.6 10.5 87 7-99 47-135 (187)
49 KOG0036 Predicted mitochondria 98.5 3.1E-07 6.7E-12 66.4 6.9 71 30-100 13-83 (463)
50 PF12763 EF-hand_4: Cytoskelet 98.5 8.4E-07 1.8E-11 53.4 7.5 65 27-95 6-70 (104)
51 PF13499 EF-hand_7: EF-hand do 98.5 2.9E-07 6.2E-12 50.6 4.3 55 3-57 9-66 (66)
52 KOG2643 Ca2+ binding protein, 98.4 3.5E-07 7.6E-12 66.5 4.2 96 5-103 210-321 (489)
53 PRK12309 transaldolase/EF-hand 98.3 4.4E-06 9.6E-11 60.9 8.1 57 26-96 329-385 (391)
54 KOG4223 Reticulocalbin, calume 98.3 3.9E-06 8.5E-11 59.0 7.2 95 5-99 124-231 (325)
55 KOG0037 Ca2+-binding protein, 98.3 7.8E-06 1.7E-10 54.7 8.2 85 5-96 68-152 (221)
56 KOG0040 Ca2+-binding actin-bun 98.1 8.6E-06 1.9E-10 66.8 7.0 68 30-98 2252-2326(2399)
57 PF13202 EF-hand_5: EF hand; P 98.1 4.2E-06 9.1E-11 37.5 3.0 23 34-56 2-24 (25)
58 cd00051 EFh EF-hand, calcium b 98.1 2.2E-05 4.8E-10 41.3 5.9 53 4-57 10-62 (63)
59 cd05022 S-100A13 S-100A13: S-1 98.0 1.9E-05 4.1E-10 46.2 5.5 55 6-60 21-76 (89)
60 KOG2643 Ca2+ binding protein, 98.0 6.6E-06 1.4E-10 60.0 4.3 82 10-97 372-454 (489)
61 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.2E-06 4.8E-11 52.3 1.5 62 28-92 51-112 (113)
62 KOG0046 Ca2+-binding actin-bun 98.0 2.6E-05 5.7E-10 58.2 7.0 69 29-99 17-88 (627)
63 cd05029 S-100A6 S-100A6: S-100 98.0 4E-05 8.6E-10 44.7 6.4 53 8-60 26-80 (88)
64 cd05030 calgranulins Calgranul 98.0 3.3E-05 7.1E-10 45.0 5.6 55 6-60 22-80 (88)
65 cd05026 S-100Z S-100Z: S-100Z 98.0 5.2E-05 1.1E-09 44.6 6.4 56 5-60 22-82 (93)
66 cd00213 S-100 S-100: S-100 dom 98.0 4.2E-05 9.1E-10 44.3 5.9 55 6-60 22-80 (88)
67 cd00052 EH Eps15 homology doma 97.9 5.7E-05 1.2E-09 41.1 6.1 54 4-60 9-62 (67)
68 KOG4666 Predicted phosphate ac 97.9 2.5E-05 5.4E-10 55.3 5.1 90 5-96 270-359 (412)
69 cd05023 S-100A11 S-100A11: S-1 97.9 7.1E-05 1.5E-09 43.8 6.3 56 5-60 21-81 (89)
70 cd05027 S-100B S-100B: S-100B 97.9 7.7E-05 1.7E-09 43.5 6.4 56 5-60 20-80 (88)
71 cd05031 S-100A10_like S-100A10 97.9 3.1E-05 6.7E-10 45.6 4.5 57 6-62 21-82 (94)
72 KOG2562 Protein phosphatase 2 97.9 8.2E-05 1.8E-09 54.8 7.3 87 5-92 326-420 (493)
73 cd00252 SPARC_EC SPARC_EC; ext 97.9 6.8E-05 1.5E-09 46.0 5.8 50 4-58 58-107 (116)
74 PF13202 EF-hand_5: EF hand; P 97.8 2.7E-05 5.8E-10 34.8 2.9 25 70-94 1-25 (25)
75 smart00027 EH Eps15 homology d 97.8 0.00014 3E-09 42.9 6.1 54 4-60 20-73 (96)
76 cd05025 S-100A1 S-100A1: S-100 97.7 0.00019 4.2E-09 42.0 5.7 57 5-61 21-82 (92)
77 KOG0751 Mitochondrial aspartat 97.6 0.00027 5.9E-09 52.8 7.0 56 3-61 83-138 (694)
78 PF13405 EF-hand_6: EF-hand do 97.6 9.4E-05 2E-09 34.6 3.1 27 69-95 1-27 (31)
79 PF14658 EF-hand_9: EF-hand do 97.6 0.00062 1.3E-08 37.5 6.4 58 2-59 6-64 (66)
80 KOG4251 Calcium binding protei 97.5 8.2E-05 1.8E-09 51.0 2.5 65 31-95 101-167 (362)
81 smart00054 EFh EF-hand, calciu 97.4 0.00024 5.3E-09 31.3 2.9 26 33-58 2-27 (29)
82 cd05024 S-100A10 S-100A10: A s 97.4 0.0012 2.6E-08 38.7 6.4 55 7-61 20-78 (91)
83 PF09279 EF-hand_like: Phospho 97.3 0.00087 1.9E-08 38.4 5.2 65 32-97 1-70 (83)
84 smart00054 EFh EF-hand, calciu 97.1 0.0007 1.5E-08 29.7 2.9 27 70-96 2-28 (29)
85 PRK12309 transaldolase/EF-hand 97.1 0.001 2.2E-08 48.8 4.8 43 3-59 343-385 (391)
86 KOG4065 Uncharacterized conser 97.0 0.0036 7.8E-08 38.3 5.9 60 34-93 70-142 (144)
87 PF14788 EF-hand_10: EF hand; 96.8 0.0096 2.1E-07 31.1 5.4 49 11-60 2-50 (51)
88 KOG4578 Uncharacterized conser 96.6 0.001 2.2E-08 47.4 1.2 67 27-96 329-398 (421)
89 KOG1029 Endocytic adaptor prot 96.5 0.0063 1.4E-07 47.9 5.4 67 27-96 191-257 (1118)
90 KOG0751 Mitochondrial aspartat 96.5 0.02 4.3E-07 43.2 7.5 104 5-112 47-151 (694)
91 PLN02952 phosphoinositide phos 96.4 0.054 1.2E-06 42.0 9.9 90 6-96 12-110 (599)
92 KOG3555 Ca2+-binding proteogly 96.4 0.0074 1.6E-07 43.4 4.7 67 28-99 247-313 (434)
93 KOG0042 Glycerol-3-phosphate d 96.4 0.0079 1.7E-07 45.9 5.0 80 31-111 593-672 (680)
94 KOG0038 Ca2+-binding kinase in 96.4 0.0086 1.9E-07 38.2 4.4 70 27-99 70-139 (189)
95 PF12763 EF-hand_4: Cytoskelet 96.2 0.028 6E-07 33.8 5.7 51 6-59 21-71 (104)
96 KOG4666 Predicted phosphate ac 96.2 0.0058 1.3E-07 43.7 3.1 84 7-96 240-324 (412)
97 KOG2562 Protein phosphatase 2 96.1 0.015 3.2E-07 43.3 5.0 57 37-97 284-344 (493)
98 KOG4347 GTPase-activating prot 95.9 0.015 3.2E-07 44.9 4.4 78 11-90 535-612 (671)
99 KOG1955 Ral-GTPase effector RA 95.9 0.026 5.7E-07 42.6 5.5 68 27-97 227-294 (737)
100 KOG0377 Protein serine/threoni 95.7 0.033 7.1E-07 41.6 5.4 56 5-60 558-616 (631)
101 PF05517 p25-alpha: p25-alpha 95.2 0.2 4.2E-06 32.2 7.4 63 35-97 6-70 (154)
102 KOG0169 Phosphoinositide-speci 94.9 0.083 1.8E-06 41.6 5.6 65 32-97 137-201 (746)
103 KOG0040 Ca2+-binding actin-bun 94.9 0.17 3.7E-06 43.1 7.5 85 5-90 2264-2355(2399)
104 PF08726 EFhand_Ca_insen: Ca2+ 94.8 0.022 4.8E-07 31.7 1.7 59 29-93 4-66 (69)
105 KOG2243 Ca2+ release channel ( 94.7 0.077 1.7E-06 44.9 5.2 60 35-96 4061-4120(5019)
106 PF05042 Caleosin: Caleosin re 94.6 0.33 7.2E-06 31.8 7.0 78 32-112 8-138 (174)
107 KOG0041 Predicted Ca2+-binding 94.1 0.084 1.8E-06 35.5 3.7 44 68-111 99-143 (244)
108 KOG4251 Calcium binding protei 93.9 0.18 4E-06 35.0 5.0 87 5-92 247-341 (362)
109 KOG1265 Phospholipase C [Lipid 93.8 0.81 1.8E-05 37.2 8.9 82 11-96 205-299 (1189)
110 PF10591 SPARC_Ca_bdg: Secrete 93.0 0.029 6.4E-07 34.2 0.1 49 4-55 64-112 (113)
111 KOG0169 Phosphoinositide-speci 92.9 1.5 3.2E-05 35.0 9.1 89 3-97 145-233 (746)
112 KOG0035 Ca2+-binding actin-bun 92.3 0.56 1.2E-05 38.0 6.3 66 31-97 747-817 (890)
113 TIGR01848 PHA_reg_PhaR polyhyd 91.7 0.47 1E-05 28.6 4.1 55 39-94 11-75 (107)
114 KOG3866 DNA-binding protein of 91.0 0.76 1.7E-05 33.0 5.2 61 35-96 248-324 (442)
115 KOG2871 Uncharacterized conser 90.7 0.28 6.1E-06 35.9 2.9 65 27-92 305-370 (449)
116 KOG4578 Uncharacterized conser 90.5 0.37 8.1E-06 34.8 3.3 57 4-60 343-399 (421)
117 PF09279 EF-hand_like: Phospho 90.1 0.69 1.5E-05 26.1 3.8 54 7-60 12-70 (83)
118 KOG1029 Endocytic adaptor prot 89.1 1.8 3.9E-05 34.9 6.3 60 33-96 18-77 (1118)
119 PLN02222 phosphoinositide phos 88.3 2.9 6.2E-05 32.7 6.9 68 27-96 21-90 (581)
120 PLN02228 Phosphoinositide phos 88.1 3.9 8.4E-05 31.8 7.5 69 27-97 20-93 (567)
121 PF05042 Caleosin: Caleosin re 87.5 4.2 9.2E-05 26.7 6.4 65 31-95 96-165 (174)
122 KOG0039 Ferric reductase, NADH 86.8 2.1 4.5E-05 33.8 5.5 81 8-96 2-89 (646)
123 PF08976 DUF1880: Domain of un 85.3 1 2.3E-05 27.6 2.6 32 64-95 3-34 (118)
124 PLN02230 phosphoinositide phos 84.8 6.9 0.00015 30.7 7.3 70 26-96 24-102 (598)
125 PF07308 DUF1456: Protein of u 84.1 5.3 0.00011 22.1 5.5 46 49-95 15-60 (68)
126 PF09069 EF-hand_3: EF-hand; 83.1 7.2 0.00016 22.8 8.1 63 31-96 3-75 (90)
127 PLN02223 phosphoinositide phos 81.7 8.3 0.00018 29.9 6.6 69 27-96 12-92 (537)
128 KOG0998 Synaptic vesicle prote 81.7 0.68 1.5E-05 37.6 1.0 67 28-97 280-346 (847)
129 PF12174 RST: RCD1-SRO-TAF4 (R 80.6 5 0.00011 22.3 4.0 49 8-60 6-54 (70)
130 PF12174 RST: RCD1-SRO-TAF4 (R 78.8 5.8 0.00013 22.0 3.9 51 45-99 6-56 (70)
131 PF14513 DAG_kinase_N: Diacylg 78.3 4.1 8.9E-05 25.8 3.5 42 4-45 42-83 (138)
132 KOG3449 60S acidic ribosomal p 78.1 10 0.00022 23.0 4.9 45 33-78 3-47 (112)
133 PF07879 PHB_acc_N: PHB/PHA ac 76.4 5.6 0.00012 21.7 3.2 22 38-59 10-31 (64)
134 KOG4403 Cell surface glycoprot 76.2 3.2 6.8E-05 31.3 2.9 107 3-114 37-149 (575)
135 KOG1955 Ral-GTPase effector RA 76.2 5.7 0.00012 30.6 4.2 48 9-59 246-293 (737)
136 PLN02952 phosphoinositide phos 76.0 12 0.00027 29.4 6.2 55 44-99 13-68 (599)
137 PTZ00373 60S Acidic ribosomal 73.3 17 0.00036 22.2 5.1 54 33-92 5-58 (112)
138 KOG1707 Predicted Ras related/ 72.3 6.3 0.00014 30.8 3.8 61 31-95 315-376 (625)
139 cd07313 terB_like_2 tellurium 69.5 7.3 0.00016 22.7 3.0 30 66-95 35-64 (104)
140 KOG3555 Ca2+-binding proteogly 68.2 6.9 0.00015 28.7 3.1 65 32-96 212-278 (434)
141 PF09068 EF-hand_2: EF hand; 67.8 8.4 0.00018 23.9 3.1 27 33-59 99-125 (127)
142 PF11116 DUF2624: Protein of u 67.5 22 0.00047 20.6 6.1 48 46-94 13-60 (85)
143 COG4359 Uncharacterized conser 67.4 28 0.0006 23.5 5.5 76 8-96 11-87 (220)
144 PF01023 S_100: S-100/ICaBP ty 67.1 14 0.00031 18.4 3.6 28 32-59 7-36 (44)
145 cd05833 Ribosomal_P2 Ribosomal 66.4 27 0.00058 21.2 5.1 55 34-94 4-58 (109)
146 PF12875 DUF3826: Protein of u 65.5 3.2 7E-05 27.5 0.9 55 56-112 86-140 (188)
147 KOG4347 GTPase-activating prot 65.4 7.6 0.00017 30.7 3.0 48 4-53 565-612 (671)
148 PF03672 UPF0154: Uncharacteri 65.0 20 0.00043 19.6 3.8 34 43-77 27-60 (64)
149 cd08330 CARD_ASC_NALP1 Caspase 64.7 15 0.00032 20.9 3.5 55 43-103 25-79 (82)
150 PF00404 Dockerin_1: Dockerin 64.3 11 0.00023 15.8 2.2 10 43-52 3-12 (21)
151 TIGR03573 WbuX N-acetyl sugar 63.1 25 0.00054 25.5 5.2 15 45-59 300-314 (343)
152 PF01885 PTS_2-RNA: RNA 2'-pho 62.8 37 0.00081 22.5 5.6 37 41-78 26-62 (186)
153 PF08461 HTH_12: Ribonuclease 59.8 14 0.00031 20.0 2.7 38 43-81 9-46 (66)
154 PRK00523 hypothetical protein; 58.5 28 0.00061 19.5 3.7 34 43-77 35-68 (72)
155 COG3355 Predicted transcriptio 57.7 44 0.00096 20.8 7.4 93 8-113 10-119 (126)
156 KOG0046 Ca2+-binding actin-bun 56.1 48 0.001 25.9 5.7 55 5-59 29-85 (627)
157 KOG3866 DNA-binding protein of 53.5 16 0.00036 26.5 2.8 47 49-96 225-272 (442)
158 PRK01844 hypothetical protein; 53.3 36 0.00079 19.0 3.6 34 43-77 34-67 (72)
159 PF03979 Sigma70_r1_1: Sigma-7 52.5 17 0.00037 20.5 2.4 35 43-80 17-51 (82)
160 COG3763 Uncharacterized protei 52.3 40 0.00088 18.8 3.8 34 43-77 34-67 (71)
161 KOG0035 Ca2+-binding actin-bun 51.7 58 0.0013 27.0 5.8 46 9-55 803-848 (890)
162 cd07316 terB_like_DjlA N-termi 51.6 46 0.001 19.2 4.7 9 8-16 13-21 (106)
163 PF09107 SelB-wing_3: Elongati 50.3 26 0.00057 18.0 2.6 30 44-79 7-36 (50)
164 PF07499 RuvA_C: RuvA, C-termi 50.1 33 0.00072 17.1 3.6 38 50-92 3-40 (47)
165 cd08327 CARD_RAIDD Caspase act 49.9 52 0.0011 19.3 4.5 48 43-96 31-78 (94)
166 PRK00819 RNA 2'-phosphotransfe 49.9 52 0.0011 21.7 4.6 35 41-76 27-61 (179)
167 PF12486 DUF3702: ImpA domain 48.9 26 0.00056 22.5 3.0 29 31-59 69-97 (148)
168 cd00086 homeodomain Homeodomai 48.1 37 0.0008 17.1 4.7 39 30-76 12-50 (59)
169 smart00513 SAP Putative DNA-bi 47.1 31 0.00068 16.0 2.6 19 47-66 3-21 (35)
170 PLN00138 large subunit ribosom 47.1 65 0.0014 19.6 5.4 51 36-92 6-56 (113)
171 COG2818 Tag 3-methyladenine DN 45.7 38 0.00082 22.6 3.4 71 30-102 54-128 (188)
172 PF02037 SAP: SAP domain; Int 45.7 29 0.00062 16.2 2.2 19 47-66 3-21 (35)
173 KOG1954 Endocytosis/signaling 45.3 38 0.00083 25.6 3.7 56 33-92 446-501 (532)
174 PF10982 DUF2789: Protein of u 44.5 46 0.001 18.7 3.2 35 50-85 5-39 (74)
175 KOG0506 Glutaminase (contains 44.0 33 0.00072 26.5 3.3 60 35-95 90-157 (622)
176 TIGR00135 gatC glutamyl-tRNA(G 43.7 45 0.00097 19.2 3.3 28 48-76 1-28 (93)
177 PF09336 Vps4_C: Vps4 C termin 43.3 49 0.0011 17.7 3.1 26 47-73 29-54 (62)
178 PRK09462 fur ferric uptake reg 42.9 83 0.0018 19.7 4.7 42 34-76 20-61 (148)
179 KOG1707 Predicted Ras related/ 42.7 70 0.0015 25.4 4.9 43 31-74 195-238 (625)
180 PF09373 PMBR: Pseudomurein-bi 42.2 31 0.00068 15.9 2.0 15 8-22 2-16 (33)
181 KOG4004 Matricellular protein 42.0 14 0.00031 25.1 1.0 57 36-95 192-249 (259)
182 cd03035 ArsC_Yffb Arsenate Red 41.7 35 0.00077 20.2 2.7 57 45-103 33-89 (105)
183 PHA02105 hypothetical protein 40.9 59 0.0013 17.4 3.3 49 47-95 4-56 (68)
184 cd07357 HN_L-whirlin_R2_like S 40.7 26 0.00056 20.0 1.8 30 66-95 17-46 (81)
185 PF10668 Phage_terminase: Phag 40.7 60 0.0013 17.4 3.4 33 34-73 10-42 (60)
186 PF08672 APC2: Anaphase promot 40.2 61 0.0013 17.3 4.5 31 28-59 12-44 (60)
187 PF15565 Imm16: Immunity prote 39.5 65 0.0014 19.4 3.5 24 88-111 63-87 (106)
188 KOG0998 Synaptic vesicle prote 39.5 22 0.00048 29.2 1.9 63 31-96 11-73 (847)
189 PF05099 TerB: Tellurite resis 38.4 13 0.00028 22.8 0.4 50 44-94 36-87 (140)
190 PRK00034 gatC aspartyl/glutamy 37.7 65 0.0014 18.5 3.3 29 47-76 2-30 (95)
191 PF07128 DUF1380: Protein of u 37.5 80 0.0017 20.1 3.8 48 48-96 27-79 (139)
192 PRK09430 djlA Dna-J like membr 37.3 1.5E+02 0.0031 20.9 5.5 52 42-98 66-122 (267)
193 PF11829 DUF3349: Protein of u 35.9 48 0.001 19.7 2.5 48 48-96 20-70 (96)
194 TIGR02675 tape_meas_nterm tape 35.7 60 0.0013 18.0 2.9 17 43-59 26-42 (75)
195 cd08332 CARD_CASP2 Caspase act 35.0 93 0.002 17.9 3.9 47 44-96 31-77 (90)
196 PF02188 GoLoco: GoLoco motif; 34.8 42 0.00092 14.4 1.6 19 88-106 2-20 (23)
197 PF03732 Retrotrans_gag: Retro 33.9 86 0.0019 17.2 5.0 25 11-35 27-51 (96)
198 COG4103 Uncharacterized protei 33.8 67 0.0014 20.6 3.0 60 34-96 33-94 (148)
199 cd08324 CARD_NOD1_CARD4 Caspas 33.6 1E+02 0.0022 17.9 4.1 48 43-96 25-72 (85)
200 TIGR01639 P_fal_TIGR01639 Plas 33.4 81 0.0018 16.8 3.5 31 46-77 8-38 (61)
201 PF11020 DUF2610: Domain of un 33.2 74 0.0016 18.2 2.9 46 50-96 31-77 (82)
202 COG5562 Phage envelope protein 31.8 31 0.00067 21.8 1.3 22 75-96 79-100 (137)
203 KOG2301 Voltage-gated Ca2+ cha 31.6 57 0.0012 29.0 3.2 68 27-96 1413-1484(1592)
204 TIGR01529 argR_whole arginine 31.5 1.3E+02 0.0028 19.0 4.2 36 43-79 12-47 (146)
205 PF10897 DUF2713: Protein of u 31.4 98 0.0021 21.1 3.7 18 7-24 174-191 (246)
206 PF12631 GTPase_Cys_C: Catalyt 31.0 97 0.0021 16.9 3.5 46 31-77 23-72 (73)
207 PF01475 FUR: Ferric uptake re 31.0 91 0.002 18.6 3.4 39 36-76 13-51 (120)
208 PF08414 NADPH_Ox: Respiratory 30.2 1.3E+02 0.0028 18.0 6.8 61 31-97 30-93 (100)
209 PF01325 Fe_dep_repress: Iron 29.7 94 0.002 16.4 3.9 40 31-78 8-47 (60)
210 COG5611 Predicted nucleic-acid 29.5 1.4E+02 0.0031 18.4 6.2 70 22-92 11-83 (130)
211 PF02761 Cbl_N2: CBL proto-onc 29.5 1.2E+02 0.0026 17.6 5.6 49 46-95 21-69 (85)
212 KOG2419 Phosphatidylserine dec 29.0 37 0.00079 27.4 1.6 63 32-95 438-532 (975)
213 PF13623 SurA_N_2: SurA N-term 28.9 1.6E+02 0.0034 18.7 8.0 39 53-92 95-143 (145)
214 PF15244 HSD3: Hydroxy-steroid 28.7 93 0.002 23.5 3.5 44 53-98 369-412 (419)
215 PLN02228 Phosphoinositide phos 27.8 2.6E+02 0.0056 22.2 5.9 52 8-59 36-92 (567)
216 PF08355 EF_assoc_1: EF hand a 27.8 60 0.0013 18.3 1.9 20 3-22 11-30 (76)
217 PF12793 SgrR_N: Sugar transpo 27.6 1.5E+02 0.0032 18.0 4.2 38 32-76 5-42 (115)
218 PF11422 IBP39: Initiator bind 27.0 2E+02 0.0043 19.2 6.1 53 10-62 36-90 (181)
219 cd04411 Ribosomal_P1_P2_L12p R 26.8 1.5E+02 0.0032 17.8 5.7 42 48-95 17-58 (105)
220 PF08730 Rad33: Rad33; InterP 26.7 1.9E+02 0.0042 19.0 4.4 33 9-41 101-133 (170)
221 cd08326 CARD_CASP9 Caspase act 26.6 1.3E+02 0.0029 17.1 4.1 48 44-97 27-74 (84)
222 KOG3442 Uncharacterized conser 25.9 1.7E+02 0.0037 18.3 3.8 41 43-85 51-95 (132)
223 COG2058 RPP1A Ribosomal protei 25.8 1.6E+02 0.0036 17.9 4.7 50 37-93 7-56 (109)
224 COG1859 KptA RNA:NAD 2'-phosph 25.4 1.7E+02 0.0037 20.0 4.1 61 7-78 29-89 (211)
225 PRK14981 DNA-directed RNA poly 25.3 1.6E+02 0.0035 17.7 3.7 27 64-94 78-104 (112)
226 COG1460 Uncharacterized protei 25.2 1.4E+02 0.0029 18.4 3.2 14 9-22 11-24 (114)
227 COG0721 GatC Asp-tRNAAsn/Glu-t 25.2 1.3E+02 0.0028 17.7 3.1 28 47-75 2-29 (96)
228 cd07176 terB tellurite resista 25.1 39 0.00084 19.6 0.9 13 7-19 15-27 (111)
229 COG1321 TroR Mn-dependent tran 24.9 1.2E+02 0.0026 19.4 3.2 47 32-88 11-57 (154)
230 PF09454 Vps23_core: Vps23 cor 24.6 35 0.00075 18.6 0.6 19 82-100 37-55 (65)
231 PF09312 SurA_N: SurA N-termin 24.5 1.2E+02 0.0027 18.1 3.1 36 58-96 61-96 (118)
232 PRK05849 hypothetical protein; 23.9 1.3E+02 0.0028 24.8 3.8 21 83-103 502-522 (783)
233 PRK06402 rpl12p 50S ribosomal 23.6 1.8E+02 0.0039 17.6 5.6 40 47-92 16-55 (106)
234 cd07153 Fur_like Ferric uptake 23.5 1.7E+02 0.0036 17.1 4.6 31 45-76 14-44 (116)
235 cd08316 Death_FAS_TNFRSF6 Deat 23.5 1.7E+02 0.0037 17.2 4.6 12 51-62 70-81 (97)
236 PF08100 Dimerisation: Dimeris 23.3 44 0.00095 17.2 0.8 38 36-75 11-48 (51)
237 PF04876 Tenui_NCP: Tenuivirus 23.1 2.2E+02 0.0048 18.5 5.8 15 8-22 97-111 (175)
238 PF12419 DUF3670: SNF2 Helicas 23.0 2E+02 0.0044 17.9 4.3 31 45-75 62-94 (141)
239 PF13829 DUF4191: Domain of un 23.0 2.1E+02 0.0045 19.8 4.1 40 37-77 157-196 (224)
240 PF06207 DUF1002: Protein of u 22.6 1.9E+02 0.0041 19.9 3.9 46 49-95 173-222 (225)
241 TIGR01616 nitro_assoc nitrogen 22.2 2E+02 0.0044 17.7 4.7 55 45-102 35-89 (126)
242 TIGR00624 tag DNA-3-methyladen 22.0 99 0.0021 20.5 2.4 66 30-99 52-121 (179)
243 PRK13778 paaA phenylacetate-Co 21.9 76 0.0016 23.0 2.0 31 83-113 269-308 (314)
244 PF00046 Homeobox: Homeobox do 21.6 1.3E+02 0.0028 15.1 4.5 38 31-76 13-50 (57)
245 COG0735 Fur Fe2+/Zn2+ uptake r 21.4 2.2E+02 0.0049 17.8 4.6 33 44-77 33-65 (145)
246 PF07261 DnaB_2: Replication i 21.2 82 0.0018 16.9 1.7 42 37-78 2-43 (77)
247 PF11848 DUF3368: Domain of un 21.2 1.3E+02 0.0028 15.0 4.0 33 43-76 13-46 (48)
248 PF06226 DUF1007: Protein of u 21.0 80 0.0017 21.3 1.9 22 38-59 57-78 (212)
249 cd08310 Death_NFkB-like Death 20.9 1.7E+02 0.0036 16.2 4.1 44 10-62 21-64 (72)
250 PHA02975 hypothetical protein; 20.6 1.1E+02 0.0025 16.9 2.1 18 10-27 17-34 (69)
251 PLN02230 phosphoinositide phos 20.5 2.7E+02 0.0059 22.3 4.8 32 66-98 27-58 (598)
252 PRK10353 3-methyl-adenine DNA 20.5 77 0.0017 21.2 1.7 68 30-99 53-124 (187)
253 PF01498 HTH_Tnp_Tc3_2: Transp 20.3 1.6E+02 0.0034 15.7 2.7 33 44-77 10-42 (72)
254 cd08819 CARD_MDA5_2 Caspase ac 20.2 2E+02 0.0043 16.8 5.7 53 44-100 30-82 (88)
255 COG5394 Uncharacterized protei 20.2 2.7E+02 0.0059 18.4 4.1 21 39-59 20-40 (193)
256 PF10437 Lip_prot_lig_C: Bacte 20.1 1.8E+02 0.0039 16.2 4.5 42 50-94 44-86 (86)
257 KOG1265 Phospholipase C [Lipid 20.1 5.2E+02 0.011 22.2 6.3 41 53-97 210-250 (1189)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.82 E-value=2.4e-19 Score=114.56 Aligned_cols=89 Identities=29% Similarity=0.430 Sum_probs=85.3
Q ss_pred CCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 044989 7 HDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALS 86 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~ 86 (115)
+.+.|+|.+|+.+|...+...+..+++.++|+.||.+++|+|+..+++.++..+|. .+++++++.+++.++.+++|.|+
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~i~ 146 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGEID 146 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCceEe
Confidence 56899999999999999988888999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHh
Q 044989 87 QFEFCILMVR 96 (115)
Q Consensus 87 ~~eF~~~l~~ 96 (115)
|++|+..+..
T Consensus 147 ~~eF~~~~~~ 156 (160)
T COG5126 147 YEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=6.9e-18 Score=107.88 Aligned_cols=92 Identities=29% Similarity=0.365 Sum_probs=83.4
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCc----HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGF----ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDL 79 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~ 79 (115)
...++|.|+|++|+.++......... .++++.+|+.||++++|+||.++|+.++..+|. +.+..+++.+++..|.
T Consensus 54 D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~ 132 (151)
T KOG0027|consen 54 DLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDV 132 (151)
T ss_pred CCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCC
Confidence 35689999999999999877654443 458999999999999999999999999999998 9999999999999999
Q ss_pred CCCCcccHHHHHHHHHh
Q 044989 80 DGDGALSQFEFCILMVR 96 (115)
Q Consensus 80 ~~~g~I~~~eF~~~l~~ 96 (115)
++||.|+|++|+.+|..
T Consensus 133 d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 133 DGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCCCeEeHHHHHHHHhc
Confidence 99999999999999864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.5e-16 Score=99.56 Aligned_cols=92 Identities=33% Similarity=0.482 Sum_probs=87.5
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
..+.|.|+|++|+..|+..+...++.+++..+|+.+|.+++|+|+..+|+.+...+|. ++++.++..++..++.+++|.
T Consensus 80 k~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge-nltD~El~eMIeEAd~d~dge 158 (172)
T KOG0028|consen 80 KEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE-NLTDEELMEMIEEADRDGDGE 158 (172)
T ss_pred hccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc-cccHHHHHHHHHHhccccccc
Confidence 3567999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 044989 85 LSQFEFCILMVRL 97 (115)
Q Consensus 85 I~~~eF~~~l~~~ 97 (115)
|+-+||..+|+..
T Consensus 159 vneeEF~~imk~t 171 (172)
T KOG0028|consen 159 VNEEEFIRIMKKT 171 (172)
T ss_pred ccHHHHHHHHhcC
Confidence 9999999999753
No 4
>PTZ00183 centrin; Provisional
Probab=99.64 E-value=5.9e-15 Score=94.10 Aligned_cols=91 Identities=32% Similarity=0.522 Sum_probs=82.3
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
.+++|.|+|++|+.++............+..+|+.+|.+++|.|+.+++..++..+|. .++..++..++..++.+++|.
T Consensus 64 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~l~~~~~~~~~~~~d~~~~g~ 142 (158)
T PTZ00183 64 KDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE-TITDEELQEMIDEADRNGDGE 142 (158)
T ss_pred CCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCc
Confidence 5689999999999988776555566678999999999999999999999999999997 899999999999999999999
Q ss_pred ccHHHHHHHHHh
Q 044989 85 LSQFEFCILMVR 96 (115)
Q Consensus 85 I~~~eF~~~l~~ 96 (115)
|+|++|+.++..
T Consensus 143 i~~~ef~~~~~~ 154 (158)
T PTZ00183 143 ISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHhc
Confidence 999999999875
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.63 E-value=8.3e-15 Score=92.22 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=87.3
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
..+.|.|+|..|+.++..+++..++.+.+..+|+.||.+++|+|..+.++.+|...|. +.++++++.+++.+-.+..|.
T Consensus 75 ~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 75 KEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGN 153 (171)
T ss_pred HhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCc
Confidence 3568999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 044989 85 LSQFEFCILMVRL 97 (115)
Q Consensus 85 I~~~eF~~~l~~~ 97 (115)
++|..|++++...
T Consensus 154 ~dy~~~~~~ithG 166 (171)
T KOG0031|consen 154 FDYKAFTYIITHG 166 (171)
T ss_pred eeHHHHHHHHHcc
Confidence 9999999999843
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.62 E-value=1.3e-14 Score=91.44 Aligned_cols=90 Identities=24% Similarity=0.426 Sum_probs=78.7
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
.+++|.|+|++|+.++............+..+|+.+|.+++|+|+.+++..++..+|. +++..++..+++.+|.+++|.
T Consensus 58 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~ 136 (149)
T PTZ00184 58 ADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQ 136 (149)
T ss_pred cCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-CCCHHHHHHHHHhcCCCCCCc
Confidence 5678899999999988765444445567889999999999999999999999999997 889999999999999999999
Q ss_pred ccHHHHHHHHH
Q 044989 85 LSQFEFCILMV 95 (115)
Q Consensus 85 I~~~eF~~~l~ 95 (115)
|+|+||+.++.
T Consensus 137 i~~~ef~~~~~ 147 (149)
T PTZ00184 137 INYEEFVKMMM 147 (149)
T ss_pred CcHHHHHHHHh
Confidence 99999998875
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.56 E-value=5.3e-14 Score=92.53 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=78.1
Q ss_pred cCCCc-ccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCC--HHH----HHHHHHhcC
Q 044989 6 FHDDL-ADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMM--DDE----IMCMLNEGD 78 (115)
Q Consensus 6 ~~~g~-i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~--~~~----~~~~~~~~d 78 (115)
.++|. |+|++|+..+....+.....++++.+|++||.+++|+|+.+|+.+++..+-....+ ++. ++.++..+|
T Consensus 78 ~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D 157 (187)
T KOG0034|consen 78 DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEAD 157 (187)
T ss_pred cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhC
Confidence 34555 99999999999988877777799999999999999999999999999886321333 333 566889999
Q ss_pred CCCCCcccHHHHHHHHHhcCcCc
Q 044989 79 LDGDGALSQFEFCILMVRLSPGL 101 (115)
Q Consensus 79 ~~~~g~I~~~eF~~~l~~~~~~~ 101 (115)
.++||.|+++||++++.+ .|.+
T Consensus 158 ~d~DG~IsfeEf~~~v~~-~P~~ 179 (187)
T KOG0034|consen 158 TDGDGKISFEEFCKVVEK-QPDL 179 (187)
T ss_pred CCCCCcCcHHHHHHHHHc-CccH
Confidence 999999999999999975 4443
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=2.8e-14 Score=83.63 Aligned_cols=67 Identities=24% Similarity=0.216 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhcC-CCCCcccHHHHHHHHHh-cCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 30 ISELCNGFQLLMD-GEKGLITFESLKRNSLL-LGLNDMMD-DEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 30 ~~~~~~~F~~~D~-~~~g~i~~~el~~~l~~-~g~~~~~~-~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
...+..+|+.||+ +++|+|+.+||+.+++. +|. .++. .+++.+++..|.++||.|+|+||+.+|.+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4568999999999 99999999999999999 886 7887 999999999999999999999999998764
No 9
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=5.8e-14 Score=77.77 Aligned_cols=62 Identities=39% Similarity=0.490 Sum_probs=54.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHH----HHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDE----IMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~----~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
+++++|+.+|.+++|+|+.+|+..++..++. ..+... ++.+++.+|.+++|.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR-DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS-HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999986 655544 5556999999999999999999875
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=3.4e-13 Score=78.95 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 30 ISELCNGFQLLM-DGEKG-LITFESLKRNSLL-----LGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 30 ~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
...+..+|+.|| ++++| +|+.++|+.+++. +|. ..++.+++.+++..|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 457899999998 79999 5999999999999 887 889999999999999999999999999998865
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=5.7e-13 Score=87.89 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=75.9
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc----CC------CCCCHHHHHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL----GL------NDMMDDEIMCM 73 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~------~~~~~~~~~~~ 73 (115)
+.+++|.|+|.||+..+...+. ....+.+.++|++||.+++|+||.+|+..+++.+ |. ......-++.+
T Consensus 74 D~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 74 DKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKI 152 (193)
T ss_pred cccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHH
Confidence 3678999999999999876654 5666789999999999999999999988887763 31 01235668889
Q ss_pred HHhcCCCCCCcccHHHHHHHHHh
Q 044989 74 LNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 74 ~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
|+.+|.|+||.|+++||......
T Consensus 153 f~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 153 FSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999999998864
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-12 Score=85.80 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=77.7
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
..++|.|+|.||...+.. ...++.+|+.||.|++|.|+.+||+++|..+|. .++++-.+.+++.++...+|.
T Consensus 105 ~~~~G~i~f~EF~~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~Lspq~~~~lv~kyd~~~~g~ 176 (221)
T KOG0037|consen 105 RDNSGTIGFKEFKALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGY-RLSPQFYNLLVRKYDRFGGGR 176 (221)
T ss_pred CCCCCccCHHHHHHHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCc-CCCHHHHHHHHHHhccccCCc
Confidence 456899999999999855 467999999999999999999999999999998 999999999999999888999
Q ss_pred ccHHHHHHHHHhc
Q 044989 85 LSQFEFCILMVRL 97 (115)
Q Consensus 85 I~~~eF~~~l~~~ 97 (115)
|.|++|+..+..+
T Consensus 177 i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 177 IDFDDFIQCCVVL 189 (221)
T ss_pred eeHHHHHHHHHHH
Confidence 9999999988653
No 13
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.39 E-value=2.7e-12 Score=91.91 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=81.2
Q ss_pred cccccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 044989 2 AALLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDG 81 (115)
Q Consensus 2 ~~~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~ 81 (115)
++..+.+|.++|++|..++.. .+.++.+.|+.+|.++||.|+.+|+.+.|+.+|. ++++++++.+++..|.++
T Consensus 59 ~~d~~~dg~vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-~l~de~~~k~~e~~d~~g 131 (463)
T KOG0036|consen 59 AMDANRDGRVDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI-QLSDEKAAKFFEHMDKDG 131 (463)
T ss_pred hcccCcCCcccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCC-ccCHHHHHHHHHHhccCC
Confidence 456889999999999999944 3667999999999999999999999999999998 999999999999999999
Q ss_pred CCcccHHHHHHHHHh
Q 044989 82 DGALSQFEFCILMVR 96 (115)
Q Consensus 82 ~g~I~~~eF~~~l~~ 96 (115)
++.|+++||...+..
T Consensus 132 ~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 132 KATIDLEEWRDHLLL 146 (463)
T ss_pred CeeeccHHHHhhhhc
Confidence 999999999998864
No 14
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.39 E-value=3.1e-12 Score=79.46 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=73.6
Q ss_pred CcccHHHHHHHHHHhhCCcC--cHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 044989 9 DLADFEDYFPSMINRLGTEG--FISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALS 86 (115)
Q Consensus 9 g~i~~~eFl~~~~~~~~~~~--~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~ 86 (115)
.+++|++|+.++.......+ ..+++.+.++.||++++|.|...+|+.+|..+|. .+++++++.++.-. .+++|.|+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe-kl~eeEVe~Llag~-eD~nG~i~ 141 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE-KLTEEEVEELLAGQ-EDSNGCIN 141 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh-hccHHHHHHHHccc-cccCCcCc
Confidence 57999999999876654433 3468999999999999999999999999999998 99999999998854 37889999
Q ss_pred HHHHHHHHH
Q 044989 87 QFEFCILMV 95 (115)
Q Consensus 87 ~~eF~~~l~ 95 (115)
|+.|++-+.
T Consensus 142 YE~fVk~i~ 150 (152)
T KOG0030|consen 142 YEAFVKHIM 150 (152)
T ss_pred HHHHHHHHh
Confidence 999998664
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.39 E-value=3.7e-12 Score=75.06 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-cCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 30 ISELCNGFQLLM-DGEKG-LITFESLKRNSLL-LGL---NDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 30 ~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~g~---~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
.+.++++|+.|| .+++| +|+.+|++.+++. +|. ..++..+++.+++.+|.+++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356899999997 99999 5999999999985 442 04588999999999999999999999999988653
No 16
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=3.9e-12 Score=75.28 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 30 ISELCNGFQLLMD-GE-KGLITFESLKRNSLL-----LGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 30 ~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
...+..+|+.||. ++ +|+|+.+|++.+++. +|. .++..+++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4568999999997 87 799999999999986 465 778999999999999999999999999998865
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.38 E-value=4.8e-12 Score=74.82 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=57.1
Q ss_pred HHHHHHHhhhc-CCCCC-cccHHHHHHHHHh-c----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 31 SELCNGFQLLM-DGEKG-LITFESLKRNSLL-L----GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 31 ~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~----g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
..+..+|+.|| ++++| +|+.+||+.++.. . +. ..++.+++.+++.+|.+++|.|+|+||+.++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~-~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS-QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc-ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 46888999999 78998 5999999999976 2 32 4578899999999999999999999999998754
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=6.1e-12 Score=80.38 Aligned_cols=70 Identities=36% Similarity=0.446 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 28 GFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 28 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
....++..+|+.||++++|+|+..+|..+++.+|. +++..++..+++..|.+++|.|++++|+.++....
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 34567999999999999999999999999999998 99999999999999999999999999999997643
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.37 E-value=5.4e-12 Score=73.84 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcC-CC-CCcccHHHHHHHHHh---cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 31 SELCNGFQLLMD-GE-KGLITFESLKRNSLL---LGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 31 ~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~---~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
..+..+|+.||. ++ +|+|+.+||+.+++. +|. ++++++++++++..|.+++|+|+|+||+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467889999998 67 899999999999973 687 8999999999999999999999999999988753
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.33 E-value=1e-11 Score=73.68 Aligned_cols=67 Identities=24% Similarity=0.230 Sum_probs=60.4
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
.+....+..+|..+|.+++|.|+.++++.+++..| ++..+++.+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 34556899999999999999999999999999865 57889999999999999999999999998865
No 21
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-11 Score=81.00 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 044989 7 HDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALS 86 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~ 86 (115)
.+|.++.++|..+++...+..++..-...+|+.||.+++|.|+..|+..++..+.. ...++.+...|+.+|.+++|.|+
T Consensus 40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEc
Confidence 37899999999999998887777788999999999999999999999988888765 66788899999999999999999
Q ss_pred HHHHHHHHHh
Q 044989 87 QFEFCILMVR 96 (115)
Q Consensus 87 ~~eF~~~l~~ 96 (115)
++|+..++..
T Consensus 119 ~~Eml~iv~~ 128 (193)
T KOG0044|consen 119 KEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 22
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.31 E-value=1.2e-11 Score=72.18 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=59.6
Q ss_pred cHHHHHHHHhhhcC--CCCCcccHHHHHHHHHh-cCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 29 FISELCNGFQLLMD--GEKGLITFESLKRNSLL-LGLNDM----MDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 29 ~~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~-~g~~~~----~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
..+.+..+|..||. +++|.|+.+++..+++. +|. ++ +..+++.+++.++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34678999999999 89999999999999986 553 33 58999999999999999999999999998754
No 23
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=1.5e-11 Score=67.84 Aligned_cols=60 Identities=27% Similarity=0.235 Sum_probs=55.2
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+.+|..+|.+++|.|+.+|+..++...|. +..+++.+++.++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999998773 7888999999999999999999999998864
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.29 E-value=2e-11 Score=78.26 Aligned_cols=69 Identities=30% Similarity=0.344 Sum_probs=51.9
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
.+..++++++|..+|++++|.|+.++|..+++.+|. +++..++..++...+. +.+.|+|.+|+.+|...
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 444567777788888888888888888887777776 7777777777777777 77777777777777553
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=2.1e-11 Score=64.90 Aligned_cols=52 Identities=37% Similarity=0.523 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 44 EKGLITFESLKRNSLLLGLND-MMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
++|.|+.++|+.++..+|. + +++.+++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999988898 8 99999999999999999999999999999864
No 26
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.25 E-value=4.9e-11 Score=74.93 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred cCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHH----HHHHhcCCCC
Q 044989 6 FHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIM----CMLNEGDLDG 81 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~----~~~~~~d~~~ 81 (115)
.|.|.++|++|+.++....-..+..-++.-+|+++|-|++++|...+|...+..+-...+++++++ .++.+.|.++
T Consensus 83 DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~Dg 162 (189)
T KOG0038|consen 83 DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDG 162 (189)
T ss_pred CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Confidence 467889999999998776543333446778999999999999999999999988743378888865 4677899999
Q ss_pred CCcccHHHHHHHHHh
Q 044989 82 DGALSQFEFCILMVR 96 (115)
Q Consensus 82 ~g~I~~~eF~~~l~~ 96 (115)
||++++.+|-+++.+
T Consensus 163 Dgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 163 DGKLSFAEFEHVILR 177 (189)
T ss_pred CCcccHHHHHHHHHh
Confidence 999999999999875
No 27
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.24 E-value=8.2e-11 Score=68.98 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=57.6
Q ss_pred HHHHHHHHhh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 30 ISELCNGFQL-LMDGEKG-LITFESLKRNSLLL-----GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 30 ~~~~~~~F~~-~D~~~~g-~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
...+..+|+. +|++++| +|+.+||+.++..- +. ..++.+++.+++.+|.++||.|+|+||+.++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~-~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN-QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC-CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999 7788876 99999999999875 32 4667899999999999999999999999988764
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.23 E-value=6.2e-11 Score=63.53 Aligned_cols=61 Identities=36% Similarity=0.475 Sum_probs=57.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
+..+|..+|.+++|.|+.+++..++..++. +.+...+..+++.++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999997 8999999999999999999999999998865
No 29
>PTZ00183 centrin; Provisional
Probab=99.22 E-value=3.9e-10 Score=71.74 Aligned_cols=95 Identities=18% Similarity=0.030 Sum_probs=77.8
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCC
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIMCMLNEGDLDGD 82 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~d~~~~ 82 (115)
...++|.|++.+|..++... ........+..+|..+|.+++|.|+..++..++... .. ......+..+|+.+|.+++
T Consensus 27 D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-~~~~~~l~~~F~~~D~~~~ 104 (158)
T PTZ00183 27 DTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-RDPREEILKAFRLFDDDKT 104 (158)
T ss_pred CCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-CCcHHHHHHHHHHhCCCCC
Confidence 45789999999999988654 323445679999999999999999999999887653 32 4567789999999999999
Q ss_pred CcccHHHHHHHHHhcCcC
Q 044989 83 GALSQFEFCILMVRLSPG 100 (115)
Q Consensus 83 g~I~~~eF~~~l~~~~~~ 100 (115)
|.|+.+||..++....+.
T Consensus 105 G~i~~~e~~~~l~~~~~~ 122 (158)
T PTZ00183 105 GKISLKNLKRVAKELGET 122 (158)
T ss_pred CcCcHHHHHHHHHHhCCC
Confidence 999999999999765433
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.19 E-value=5.3e-10 Score=70.27 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=77.1
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDG 83 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g 83 (115)
..+++|.|++++|..++... ........+..+|+.+|.+++|.|+.+++..++............+..+|+.+|.+++|
T Consensus 21 D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g 99 (149)
T PTZ00184 21 DKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNG 99 (149)
T ss_pred cCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCC
Confidence 45789999999999987553 32344567899999999999999999999998875422134566788999999999999
Q ss_pred cccHHHHHHHHHhcCcC
Q 044989 84 ALSQFEFCILMVRLSPG 100 (115)
Q Consensus 84 ~I~~~eF~~~l~~~~~~ 100 (115)
.|+.++|..++....+.
T Consensus 100 ~i~~~e~~~~l~~~~~~ 116 (149)
T PTZ00184 100 FISAAELRHVMTNLGEK 116 (149)
T ss_pred eEeHHHHHHHHHHHCCC
Confidence 99999999998765443
No 31
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.15 E-value=3e-10 Score=69.61 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
...+.++|..+|.|++|+|+.+||..+. + ...+..+..+++.+|.++||.||++||+..+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3568999999999999999999999876 2 3457788999999999999999999999999
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=99.13 E-value=3.5e-10 Score=62.19 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 044989 35 NGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGD-GALSQFEFCILMVR 96 (115)
Q Consensus 35 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~-g~I~~~eF~~~l~~ 96 (115)
.+|..||.++.|.|...++...|+.++...+++.+++.+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999997437889999999999999887 99999999999974
No 33
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.3e-09 Score=63.74 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcCC--CCCcccHHHHHHHHH-hcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 30 ISELCNGFQLLMDG--EKGLITFESLKRNSL-LLGLNDMM----DDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 30 ~~~~~~~F~~~D~~--~~g~i~~~el~~~l~-~~g~~~~~----~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
...+...|+.|+.+ ++|+|+.+||+.++. .+|. .++ +.+++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35678899999976 489999999999997 5564 566 899999999999999999999999998865
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=2.2e-09 Score=68.27 Aligned_cols=63 Identities=29% Similarity=0.435 Sum_probs=32.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
++..+|..||.+++|+|+.++|+.+++++|. .+...++..++..+|.++.|.|+|++|+..|+
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 4455555555555555555555555555554 44444555555555555555555555555443
No 35
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.93 E-value=4.6e-09 Score=65.44 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=63.2
Q ss_pred CcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHHhc
Q 044989 26 TEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLD--GDGALSQFEFCILMVRL 97 (115)
Q Consensus 26 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~--~~g~I~~~eF~~~l~~~ 97 (115)
.+++..+++++|..||..++|+|+..++..+++.+|. ++++.++.+.+..+..+ +-..|+|++|+-++...
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 3566789999999999999999999999999999998 99999999999888766 45779999999988764
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.92 E-value=8.5e-09 Score=67.99 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=66.5
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLME 103 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e 103 (115)
...+..+..+|+.||.+.+|+|+..||+.++.++|. +-+.--+.+++++.|.|.+|+|+|-+|.-++.....+.+.
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 344567889999999999999999999999999997 8888889999999999999999999999998765444333
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=4e-08 Score=75.07 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=60.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
+..+|..+|.+++|.|+.+||..++..++. ..+++++..+|+.+|.+++|.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 789999999999999999999999999886 7889999999999999999999999999999773
No 38
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.81 E-value=2.8e-08 Score=63.01 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=55.0
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
..++++++++|..+|.|++|+|+.++|+..+..+|. ..++++++.++++. .|.|+|--|+.++-
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~elDaM~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEELDAMMKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhC----CCCeeHHHHHHHHH
Confidence 455789999999999999999999999999999997 89999999988854 46677777777663
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.78 E-value=9.5e-08 Score=55.95 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLL-----LGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
...+..+|+.|- .+.+.++..||+.++.. ++. +.++..++.+++..|.++||.|+|.||+.++...
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345778899997 56779999999999965 233 4578889999999999999999999999998653
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.71 E-value=9.6e-08 Score=50.56 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHHhhCCc-CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 7 HDDLADFEDYFPSMINRLGTE-GFISELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
.+|.|+.++|..++ ..++.. -...++..+|..+|.+++|+|+.+|+..++..
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999 444434 56677999999999999999999999998864
No 41
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-07 Score=69.34 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcC-----------cHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC---CCCCHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEG-----------FISELCNGFQLLMDGEKGLITFESLKRNSLLLGL---NDMMDDE 69 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~-----------~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~---~~~~~~~ 69 (115)
....+|.+.|...+..+..-..... ....+..+|+.+|.+++|.|+.+|++++...++. ..+++++
T Consensus 509 ~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~ 588 (631)
T KOG0377|consen 509 NGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDE 588 (631)
T ss_pred CCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHH
Confidence 3455777888777766543211111 1124677999999999999999999998877531 1688999
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 70 IMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 70 ~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
+.++.+..|.++||+|++.||...++-...
T Consensus 589 i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 589 ILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 999999999999999999999998875433
No 42
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5.5e-08 Score=68.13 Aligned_cols=88 Identities=23% Similarity=0.178 Sum_probs=70.0
Q ss_pred cccCCCcccHHHHHHHHHHhhCCc-CcH---HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTE-GFI---SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDL 79 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~-~~~---~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~ 79 (115)
..|++|.|+++||+.-|....... ++. .+-...|...|+|++|+++.+|++.++.=-+. .....++..++-..|.
T Consensus 210 Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~-d~A~~EA~hL~~eaD~ 288 (325)
T KOG4223|consen 210 DKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ-DHAKAEARHLLHEADE 288 (325)
T ss_pred ccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc-cHHHHHHHHHhhhhcc
Confidence 378999999999999876654311 121 23457788899999999999999988854454 5567888999999999
Q ss_pred CCCCcccHHHHHH
Q 044989 80 DGDGALSQFEFCI 92 (115)
Q Consensus 80 ~~~g~I~~~eF~~ 92 (115)
++||++|++|.+.
T Consensus 289 dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 289 DKDGKLSKEEILE 301 (325)
T ss_pred CccccccHHHHhh
Confidence 9999999999775
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=3.8e-08 Score=45.78 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
+..+|+.||+|++|+|+.+|+..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666553
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.59 E-value=2.8e-07 Score=70.57 Aligned_cols=66 Identities=24% Similarity=0.250 Sum_probs=57.4
Q ss_pred CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC-CCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 28 GFISELCNGFQLLMDGEKGLITFESLKRNSLLLG-LNDMMDDE---IMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 28 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~---~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
.+.+++.++|..+|++++|++ +..+++.+| . .+++.+ ++.+|+.+|.+++|.|+++||+.++....
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~-~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIE-DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCC-CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 345789999999999999997 888899999 5 677766 89999999999999999999999997643
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.58 E-value=8.8e-08 Score=44.55 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 69 EIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 69 ~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+++++|+.+|.|+||.|+++||+.+|..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 46
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.57 E-value=1.1e-07 Score=44.85 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=25.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHH-hcC
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSL-LLG 61 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~-~~g 61 (115)
+++.+|+.+|.+++|+|+.+|+..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 565
No 47
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.55 E-value=3.6e-07 Score=47.66 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=41.0
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 47 LITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+++.+|++.+|+.++. .+++..+..+|+.+|.+++|.+..+||...+..
T Consensus 1 kmsf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4789999999999998 999999999999999999999999999998865
No 48
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.55 E-value=2.2e-06 Score=56.63 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCc-ccHHHHHHHHHhcCCCCCCHH-HHHHHHHhcCCCCCCc
Q 044989 7 HDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGL-ITFESLKRNSLLLGLNDMMDD-EIMCMLNEGDLDGDGA 84 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-i~~~el~~~l~~~g~~~~~~~-~~~~~~~~~d~~~~g~ 84 (115)
++|.++.++|..+...... + -..+++..|+.+++|. |++.++..++...-. +.+.. .++-.|+.+|.+++|.
T Consensus 47 ~~g~lt~eef~~i~~~~~N---p--~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~-~~~~~~Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALN---P--LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP-KASKREKLRFAFRVYDLDGDGF 120 (187)
T ss_pred ccCccCHHHHHHHHHHhcC---c--HHHHHHHHHhccCCCCccCHHHHHHHHhhhcC-CccHHHHHHHHHHHhcCCCCCc
Confidence 7899999999999854432 1 3568888999999999 999999999998875 44444 7888999999999999
Q ss_pred ccHHHHHHHHHhcCc
Q 044989 85 LSQFEFCILMVRLSP 99 (115)
Q Consensus 85 I~~~eF~~~l~~~~~ 99 (115)
|+.+|+..++....+
T Consensus 121 I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 121 ISREELKQILRMMVG 135 (187)
T ss_pred CcHHHHHHHHHHHHc
Confidence 999999999977544
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.55 E-value=3.1e-07 Score=66.39 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcC
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPG 100 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 100 (115)
..+++..|+.||.+++|.++..++.+.+..+............++..+|.+.||.++|.||.+++.....+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~ 83 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELE 83 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHH
Confidence 34688999999999999999999999999988623667778889999999999999999999999765443
No 50
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.53 E-value=8.4e-07 Score=53.38 Aligned_cols=65 Identities=26% Similarity=0.257 Sum_probs=56.4
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
......+..+|...|. ++|.|+-++.+.++...| ++.+.+.++....|.+++|+++++||+-.|.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4556789999999985 689999999999998866 5889999999999999999999999988774
No 51
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.48 E-value=2.9e-07 Score=50.56 Aligned_cols=55 Identities=13% Similarity=-0.029 Sum_probs=43.9
Q ss_pred ccccCCCcccHHHHHHHHHHhhCC---cCcHHHHHHHHhhhcCCCCCcccHHHHHHHH
Q 044989 3 ALLFHDDLADFEDYFPSMINRLGT---EGFISELCNGFQLLMDGEKGLITFESLKRNS 57 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 57 (115)
.+.+++|.|+.+||..++...... ......+..+|+.+|.+++|.|+.+|+..++
T Consensus 9 ~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 9 FDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 357899999999999999876442 2222457778999999999999999998764
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.5e-07 Score=66.49 Aligned_cols=96 Identities=22% Similarity=0.207 Sum_probs=69.4
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc------CCC--------CCCHHHH
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL------GLN--------DMMDDEI 70 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~------g~~--------~~~~~~~ 70 (115)
+..+|-|+|.||+-.+... .-+...++.+|+.||.|+||-|+.+|+..+.+.+ |.. +.-..++
T Consensus 210 lg~~GLIsfSdYiFLlTlL---S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 210 LGESGLISFSDYIFLLTLL---SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred cCCCCeeeHHHHHHHHHHH---ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 5678999999999888765 3345678999999999999999999999887542 110 0011233
Q ss_pred HHHHH--hcCCCCCCcccHHHHHHHHHhcCcCccC
Q 044989 71 MCMLN--EGDLDGDGALSQFEFCILMVRLSPGLME 103 (115)
Q Consensus 71 ~~~~~--~~d~~~~g~I~~~eF~~~l~~~~~~~~e 103 (115)
+..+. -+..++++++++++|...+.++..+.++
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~ 321 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENLQEEILE 321 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHHHHHHHH
Confidence 33333 3467889999999999999887655544
No 53
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.31 E-value=4.4e-06 Score=60.92 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=49.2
Q ss_pred CcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 26 TEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 26 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
.......+..+|+.+|.+++|.|+.+|+.. ++.+|..+|.++||.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 344456789999999999999999999831 467999999999999999999998865
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3.9e-06 Score=59.00 Aligned_cols=95 Identities=22% Similarity=0.200 Sum_probs=68.1
Q ss_pred ccCCCcccHHHHHHHHHHhh------CC-cCcH------HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHH
Q 044989 5 LFHDDLADFEDYFPSMINRL------GT-EGFI------SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIM 71 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~------~~-~~~~------~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~ 71 (115)
.+.+|.|+|++++...-.+. .. .+.. .+-.+-|+.-|.|++|.+|.+||..++-=--...+.+-.+.
T Consensus 124 ~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~ 203 (325)
T KOG4223|consen 124 KNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIA 203 (325)
T ss_pred cCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHH
Confidence 56899999999998765421 11 1111 13446799999999999999999987721110023444567
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 72 CMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 72 ~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
..+...|.|+||.|+++||+.=|....+
T Consensus 204 Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 204 ETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred HHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 7888999999999999999998876443
No 55
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.29 E-value=7.8e-06 Score=54.69 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=50.7
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
..+.|.|+-+|....+..--...-..+.++.+..+||.+.+|+|..+|++.+...+. .+.++|+.+|.|++|+
T Consensus 68 ~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr~vF~~~D~D~SG~ 140 (221)
T KOG0037|consen 68 RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWRNVFRTYDRDRSGT 140 (221)
T ss_pred ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHHHHHHhcccCCCCc
Confidence 344556666666555543323334445566666666666666666666666665444 2666666666666677
Q ss_pred ccHHHHHHHHHh
Q 044989 85 LSQFEFCILMVR 96 (115)
Q Consensus 85 I~~~eF~~~l~~ 96 (115)
|+..|+...+..
T Consensus 141 I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 141 IDSSELRQALTQ 152 (221)
T ss_pred ccHHHHHHHHHH
Confidence 776666666654
No 56
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.14 E-value=8.6e-06 Score=66.77 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCC--C-----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDM--M-----DDEIMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~--~-----~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
..++.-+|+.||++.+|.++-++++.+|+.+|. .+ . +.+++.++...|++.+|+|+..+|+.+|.+..
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY-~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGY-DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCC-CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 356788999999999999999999999999997 55 2 34799999999999999999999999997643
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.12 E-value=4.2e-06 Score=37.46 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=16.7
Q ss_pred HHHHhhhcCCCCCcccHHHHHHH
Q 044989 34 CNGFQLLMDGEKGLITFESLKRN 56 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~ 56 (115)
..+|+.+|.|++|.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777664
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.07 E-value=2.2e-05 Score=41.32 Aligned_cols=53 Identities=11% Similarity=-0.051 Sum_probs=44.5
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNS 57 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 57 (115)
..+++|.|++++|..++.... .......+..+|..+|.+++|.|+.+++..++
T Consensus 10 d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 10 DKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 457789999999999987653 35566778899999999999999999998765
No 59
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.04 E-value=1.9e-05 Score=46.22 Aligned_cols=55 Identities=11% Similarity=-0.050 Sum_probs=45.7
Q ss_pred cCCCcccHHHHHHHHHHhhCCcCcH-HHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 6 FHDDLADFEDYFPSMINRLGTEGFI-SELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
.++|.|+..++..++...++..-.. .++..+++.+|.|++|.|+++|+..++..+
T Consensus 21 ~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 21 GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6789999999999998744432223 679999999999999999999999888654
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.04 E-value=6.6e-06 Score=60.05 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-cCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 044989 10 LADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLL-LGLNDMMDDEIMCMLNEGDLDGDGALSQF 88 (115)
Q Consensus 10 ~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~d~~~~g~I~~~ 88 (115)
.|+++||..+..-. .....+..+...| ....+.|+..+++++... .|. ++++..++.+|..+|.|+||.++++
T Consensus 372 gISl~Ef~~Ff~Fl----~~l~dfd~Al~fy-~~Ag~~i~~~~f~raa~~vtGv-eLSdhVvdvvF~IFD~N~Dg~LS~~ 445 (489)
T KOG2643|consen 372 GISLQEFKAFFRFL----NNLNDFDIALRFY-HMAGASIDEKTFQRAAKVVTGV-ELSDHVVDVVFTIFDENNDGTLSHK 445 (489)
T ss_pred CcCHHHHHHHHHHH----hhhhHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCc-ccccceeeeEEEEEccCCCCcccHH
Confidence 46666666655332 1122333333333 344667777777777655 476 8888888889999999999999999
Q ss_pred HHHHHHHhc
Q 044989 89 EFCILMVRL 97 (115)
Q Consensus 89 eF~~~l~~~ 97 (115)
||+.+|.+.
T Consensus 446 EFl~Vmk~R 454 (489)
T KOG2643|consen 446 EFLAVMKRR 454 (489)
T ss_pred HHHHHHHHH
Confidence 999999763
No 61
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.03 E-value=2.2e-06 Score=52.31 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=45.3
Q ss_pred CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 28 GFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 28 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
.....+.+.|..+|.|++|.|+..|+..+...+. ..+.-+...++.+|.++||.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445688889999999999999999988765442 3445688899999999999999999875
No 62
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.01 E-value=2.6e-05 Score=58.17 Aligned_cols=69 Identities=28% Similarity=0.329 Sum_probs=59.4
Q ss_pred cHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 29 FISELCNGFQLLMDGEKGLITFESLKRNSLLLGLND---MMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 29 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~---~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
....+...|...| +++|+++..++..++.+.+. + ...++++.++...+.+.+|.|+|++|+.++....+
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~-~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKL-PLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcc-cccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 3456888999999 99999999999999999875 3 34788999999999999999999999998866543
No 63
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.01 E-value=4e-05 Score=44.74 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=45.1
Q ss_pred CCcccHHHHHHHHHHh--hCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 8 DDLADFEDYFPSMINR--LGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
+|.|+.+||..++.+. +......+++..+++.+|.+++|.|++++|..++..+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 7899999999999752 4555567889999999999999999999998887654
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.96 E-value=3.3e-05 Score=45.02 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=45.1
Q ss_pred cCCCcccHHHHHHHHHHhhCCcCc----HHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 6 FHDDLADFEDYFPSMINRLGTEGF----ISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
.++|.|+.+++..++....+.... ...+..+|+.+|.+++|.|+.+++..++..+
T Consensus 22 ~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 22 GHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 357899999999999755443333 6789999999999999999999999888654
No 65
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.96 E-value=5.2e-05 Score=44.62 Aligned_cols=56 Identities=9% Similarity=-0.085 Sum_probs=45.7
Q ss_pred ccCCC-cccHHHHHHHHHHhh----CCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 5 LFHDD-LADFEDYFPSMINRL----GTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 5 ~~~~g-~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..++| .|+..|+..++.... ........+..+++.+|.+++|.|+.+|+..++..+
T Consensus 22 ~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 22 KEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56787 599999999996642 223355689999999999999999999999988654
No 66
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.95 E-value=4.2e-05 Score=44.32 Aligned_cols=55 Identities=11% Similarity=-0.080 Sum_probs=44.9
Q ss_pred cCCCcccHHHHHHHHHHhhCCc----CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 6 FHDDLADFEDYFPSMINRLGTE----GFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~~~~----~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
+++|.|+..+|..++....+.. ....++..++..+|.+++|.|+.+++..++...
T Consensus 22 ~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 22 GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5889999999999986533321 235679999999999999999999999888654
No 67
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.94 E-value=5.7e-05 Score=41.11 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=45.3
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..+++|.|+.+++..++... . .+...+..+|+.+|.+++|.|+.+++..++..+
T Consensus 9 D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 46789999999999988663 2 256678999999999999999999998887653
No 68
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.91 E-value=2.5e-05 Score=55.34 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=74.1
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCc
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGA 84 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~ 84 (115)
-+++|.++|.+....++..........-++-+|+.|+.+.+|.++..+|.-+|+... .+..-.+--+|+..+...+++
T Consensus 270 e~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~k 347 (412)
T KOG4666|consen 270 EGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPK 347 (412)
T ss_pred CCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--CcceeeccccchhhhcccCcc
Confidence 467899999999998887777666667788999999999999999999988887643 234445667888888889999
Q ss_pred ccHHHHHHHHHh
Q 044989 85 LSQFEFCILMVR 96 (115)
Q Consensus 85 I~~~eF~~~l~~ 96 (115)
|++.+|.+++..
T Consensus 348 i~~~~f~~fa~~ 359 (412)
T KOG4666|consen 348 IYASNFRKFAAT 359 (412)
T ss_pred eeHHHHHHHHHh
Confidence 999999998753
No 69
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.90 E-value=7.1e-05 Score=43.77 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=45.4
Q ss_pred ccCCC-cccHHHHHHHHHHhhC----CcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 5 LFHDD-LADFEDYFPSMINRLG----TEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 5 ~~~~g-~i~~~eFl~~~~~~~~----~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..+++ .|+.+||..++....+ .......+..+++.+|.|++|.|+.+|+..++..+
T Consensus 21 ~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 21 KDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred cCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45655 8999999999987642 23345679999999999999999999999888654
No 70
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.90 E-value=7.7e-05 Score=43.53 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=46.9
Q ss_pred ccCCC-cccHHHHHHHHHH----hhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 5 LFHDD-LADFEDYFPSMIN----RLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 5 ~~~~g-~i~~~eFl~~~~~----~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..++| .|+.+++..++.. .+.......++..+++.+|.+++|.|+++++..++..+
T Consensus 20 ~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 20 REGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred cCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46788 6999999999987 34545566779999999999999999999998887643
No 71
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.88 E-value=3.1e-05 Score=45.57 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=46.2
Q ss_pred cC-CCcccHHHHHHHHHHhh----CCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC
Q 044989 6 FH-DDLADFEDYFPSMINRL----GTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGL 62 (115)
Q Consensus 6 ~~-~g~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~ 62 (115)
++ +|.|+..++..++.... .......++..+++.+|.+++|.|+.+++..++...+.
T Consensus 21 dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 21 DGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred CCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 55 69999999999886532 22334578999999999999999999999998876553
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.87 E-value=8.2e-05 Score=54.79 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=67.2
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-------cCCCCCC-HHHHHHHHHh
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLL-------LGLNDMM-DDEIMCMLNE 76 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~g~~~~~-~~~~~~~~~~ 76 (115)
+..+|+++|.+|+-++...-. .+...-+.-+|+.+|.+++|.|+..|++-..+. .|.++++ ++.+.+++..
T Consensus 326 ~~~eGrmdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DM 404 (493)
T KOG2562|consen 326 VKVEGRMDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDM 404 (493)
T ss_pred eeecCcccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 446889999999998876543 444566899999999999999999998776544 3433444 4556777777
Q ss_pred cCCCCCCcccHHHHHH
Q 044989 77 GDLDGDGALSQFEFCI 92 (115)
Q Consensus 77 ~d~~~~g~I~~~eF~~ 92 (115)
..+...++|+.++|..
T Consensus 405 vkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 405 VKPEDENKITLQDLKG 420 (493)
T ss_pred hCccCCCceeHHHHhh
Confidence 7778889999999876
No 73
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.85 E-value=6.8e-05 Score=45.98 Aligned_cols=50 Identities=12% Similarity=-0.059 Sum_probs=42.1
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSL 58 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~ 58 (115)
+.+++|.|+.+|...+. + ......+...|..+|.|++|.||.+|+..++.
T Consensus 58 D~d~DG~Ls~~EL~~~~---l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 58 DGNYDGKLSHHELAPIR---L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred CCCCCCcCCHHHHHHHH---c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 57899999999998775 1 23345678899999999999999999999983
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.83 E-value=2.7e-05 Score=34.81 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 70 IMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 70 ~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
++.+|+.+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998864
No 75
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.77 E-value=0.00014 Score=42.92 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=45.6
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..+++|.|+.+++..++... .-...++..+|..+|.+++|.|+.+++..++..+
T Consensus 20 D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 20 DKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 46789999999999998763 2345678999999999999999999999887653
No 76
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.68 E-value=0.00019 Score=41.96 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=45.8
Q ss_pred ccCCC-cccHHHHHHHHHHhh----CCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 044989 5 LFHDD-LADFEDYFPSMINRL----GTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG 61 (115)
Q Consensus 5 ~~~~g-~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 61 (115)
..++| .|+..++..++...+ +.......+..+|+.+|.+++|.|+.+++..++..+.
T Consensus 21 ~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 21 KEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred ccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 56889 599999999996532 2223457799999999999999999999998886543
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.63 E-value=0.00027 Score=52.78 Aligned_cols=56 Identities=18% Similarity=0.058 Sum_probs=45.2
Q ss_pred ccccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 044989 3 ALLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG 61 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 61 (115)
++.-.||-|+|+||+.+-.... .+......+|+.||+.++|.++.+++.+++.++.
T Consensus 83 aD~tKDglisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred hhhcccccccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 3455789999999988765443 3345678999999999999999999999998754
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.62 E-value=9.4e-05 Score=34.56 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 69 EIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 69 ~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
++..+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999997
No 79
>PF14658 EF-hand_9: EF-hand domain
Probab=97.59 E-value=0.00062 Score=37.51 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=50.8
Q ss_pred cccccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCC-CcccHHHHHHHHHh
Q 044989 2 AALLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEK-GLITFESLKRNSLL 59 (115)
Q Consensus 2 ~~~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~i~~~el~~~l~~ 59 (115)
||+..+.|.|.-..+..++...-.......++..+.+.+|+++. |.|+++.+..+++.
T Consensus 6 ~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 57788999999999999998776646666789999999999998 99999999998874
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.48 E-value=8.2e-05 Score=51.03 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLL-GL-NDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~-~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
+.+..+|+..|.|.+|+|+..|+++....- .. ..-+..+-+..|...|+++||+|+++||.--+.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 568899999999999999999999987642 11 011223344567889999999999999966543
No 81
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00024 Score=31.29 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHH
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSL 58 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~ 58 (115)
+..+|+.+|.+++|.|+.+++..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666666666666554
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.40 E-value=0.0012 Score=38.72 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHHhh----CCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC
Q 044989 7 HDDLADFEDYFPSMINRL----GTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG 61 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 61 (115)
+.+.++..||...+...+ ........+..+++.+|.|++|.|+++|+..++..+.
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 356899999999986543 4444566799999999999999999999998886543
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.33 E-value=0.00087 Score=38.37 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcC-CCCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhc
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLG-LNDMMDDEIMCMLNEGDLD----GDGALSQFEFCILMVRL 97 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~l~~~ 97 (115)
++..+|..+-. +.+.||.++|...|+.-. ....+..++..++..+..+ ..+.+++++|..+|.+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788999955 899999999999998763 2246899999999987644 47899999999999754
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.14 E-value=0.0007 Score=29.70 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 70 IMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 70 ~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+..+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998864
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.09 E-value=0.001 Score=48.75 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=37.4
Q ss_pred ccccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 3 ALLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
.+.+++|.|+.+||+. ...+|..+|.|++|.|+.+|+..++..
T Consensus 343 ~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 343 YDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4678999999999942 467899999999999999999998865
No 86
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0036 Score=38.27 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhc------CC--CC-CCHHHHHH----HHHhcCCCCCCcccHHHHHHH
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLL------GL--ND-MMDDEIMC----MLNEGDLDGDGALSQFEFCIL 93 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~------g~--~~-~~~~~~~~----~~~~~d~~~~g~I~~~eF~~~ 93 (115)
-..|+..|.+++|+++--|+..++... |. .| .++.+++. +++.-|.++||.|+|-||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 368999999999999999999988764 22 12 24556555 556678899999999999864
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.77 E-value=0.0096 Score=31.08 Aligned_cols=49 Identities=14% Similarity=-0.055 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 11 ADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 11 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
++|.|...++... .-.-....+..+|+..|+.++|.+..+|+....+.+
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6777777766442 212234567889999999999999999999887653
No 88
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.55 E-value=0.001 Score=47.42 Aligned_cols=67 Identities=16% Similarity=-0.053 Sum_probs=52.7
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHH---HHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESL---KRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el---~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
++.+..+++.|..+|+|+++-|...|. +.++.... -...-...+++.+|.|+|-.|+++|+...+..
T Consensus 329 ~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 329 PDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred CChhheeeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 443445788999999999999999994 44554432 23456778999999999999999999998854
No 89
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0063 Score=47.92 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=57.6
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
......++.+|+.+|+...|++|-.+-+.+|...+ ++...+.++...-|.|+||+++-+||+-.|.-
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34455789999999999999999999999987755 57778999999999999999999999887743
No 90
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.47 E-value=0.02 Score=43.19 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=75.9
Q ss_pred ccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHh-hhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 044989 5 LFHDDLADFEDYFPSMINRLGTEGFISELCNGFQ-LLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDG 83 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~-~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g 83 (115)
.++...++-++|+......+++.....++..+.. +-|.-++|-|+.+|++..-..+-. ++.-.+..|..+|..++|
T Consensus 47 ~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~---pDal~~~aFqlFDr~~~~ 123 (694)
T KOG0751|consen 47 KNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA---PDALFEVAFQLFDRLGNG 123 (694)
T ss_pred hccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC---chHHHHHHHHHhcccCCC
Confidence 5666779999999988777776666666655544 446788999999998875544332 355567789999999999
Q ss_pred cccHHHHHHHHHhcCcCccCCChHHHHhh
Q 044989 84 ALSQFEFCILMVRLSPGLMEGSPEWMIED 112 (115)
Q Consensus 84 ~I~~~eF~~~l~~~~~~~~e~~~~~~~~~ 112 (115)
.+++++|..++..+.... .++..|=.|-
T Consensus 124 ~vs~~~~~~if~~t~l~~-~~~f~~d~ef 151 (694)
T KOG0751|consen 124 EVSFEDVADIFGQTNLHH-HIPFNWDSEF 151 (694)
T ss_pred ceehHHHHHHHhcccccc-CCCccCCcch
Confidence 999999999998754432 4555554443
No 91
>PLN02952 phosphoinositide phospholipase C
Probab=96.45 E-value=0.054 Score=41.95 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=63.9
Q ss_pred cCCCcccHHHHHHHHHHhh-CCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC-CCCCCHHHHHHHHHhc----C-
Q 044989 6 FHDDLADFEDYFPSMINRL-GTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG-LNDMMDDEIMCMLNEG----D- 78 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~~----d- 78 (115)
.+.|.++|.+|..+..... ....+..++..+|..+-. +.+.+|.++|...|.... ....+.+++..++..+ .
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 3568999999988776543 233467889999999954 447899999999998864 2135666677765532 1
Q ss_pred --CCCCCcccHHHHHHHHHh
Q 044989 79 --LDGDGALSQFEFCILMVR 96 (115)
Q Consensus 79 --~~~~g~I~~~eF~~~l~~ 96 (115)
..+.+.++++.|..++..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 113346999999998864
No 92
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.41 E-value=0.0074 Score=43.42 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=56.0
Q ss_pred CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 28 GFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 28 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
.-...+-++|..+|.|.+|.++..|++.+-. .-.+.-++.+|..+|...||.|+-.|++..+....+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 3446788999999999999999999887542 335566889999999999999999999999976543
No 93
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.39 E-value=0.0079 Score=45.89 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCChHHHH
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLMEGSPEWMI 110 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e~~~~~~~ 110 (115)
...+.-|..+|.++.|+++.+++..++...+. +.+++.+.++++..+.+.+|.+...||..++.....+..+..+.++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~R~~~~ 671 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGSRRHLG 671 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHHHHHhh
Confidence 34567799999999999999999999999885 89999999999999999999999999999999888887777665554
Q ss_pred h
Q 044989 111 E 111 (115)
Q Consensus 111 ~ 111 (115)
+
T Consensus 672 ~ 672 (680)
T KOG0042|consen 672 E 672 (680)
T ss_pred h
Confidence 4
No 94
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.36 E-value=0.0086 Score=38.18 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=52.5
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
.+..+++..+|. .++.|.+|.+++..+++.+....+-+-.+.-.|+.+|-++|+.|...+....++.+..
T Consensus 70 npfk~ri~e~FS---eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 70 NPFKRRICEVFS---EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred ChHHHHHHHHhc---cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh
Confidence 344456666666 8999999999999998877631122334555789999999999999999888877543
No 95
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.16 E-value=0.028 Score=33.81 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=42.0
Q ss_pred cCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 6 FHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 6 ~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
.++|.|+-++-..++.+. .-+.+.+..++...|.+++|+++.+||..++..
T Consensus 21 ~~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SSTTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 357899999998877552 455688999999999999999999999988754
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.16 E-value=0.0058 Score=43.68 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcc
Q 044989 7 HDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL-GLNDMMDDEIMCMLNEGDLDGDGAL 85 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~d~~~~g~I 85 (115)
+.+.|...+|...+.... .+.+...|.+||.+++|.++..+....+..+ |. +.+..-++-.|+.++...||.+
T Consensus 240 kg~~igi~efa~~l~vpv-----sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p-~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRVPV-----SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP-PVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred cCCCcceeEeeeeeecch-----hhhhhhhhheecCCCCCcccHHHHhhhheeeeCC-CCcHHHHHHHHHhccccccccc
Confidence 344555566654443322 2568889999999999999998877777655 66 7889999999999999999999
Q ss_pred cHHHHHHHHHh
Q 044989 86 SQFEFCILMVR 96 (115)
Q Consensus 86 ~~~eF~~~l~~ 96 (115)
.-.+|.-++..
T Consensus 314 ge~~ls~ilq~ 324 (412)
T KOG4666|consen 314 GEHILSLILQV 324 (412)
T ss_pred chHHHHHHHHH
Confidence 99888877754
No 97
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.08 E-value=0.015 Score=43.32 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=45.8
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHH----hcCCCCCCcccHHHHHHHHHhc
Q 044989 37 FQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLN----EGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 37 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
|--+|.+++|.|+.++|...... .++.--++.+|. ......+|+++|++|+..+.+.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 77889999999999998876643 456667888988 3344578999999999998764
No 98
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.89 E-value=0.015 Score=44.91 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 044989 11 ADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEF 90 (115)
Q Consensus 11 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF 90 (115)
|+|+.|...+....+-.....-+.++|+.+|.+++|.||+.++...+..+.. .-.-+.+.-+++.++.+++ ..+.++-
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 5556666655544332322234778999999999999999999999988653 3334556678888888877 6665553
No 99
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.026 Score=42.58 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=58.2
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
.++.+.+...|+..-.+-.|+|+-.--+.++.+.. +.-.|+..|.+..|.+.||.++..|||..|.-.
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 34445677899999999999999999888887754 566889999999999999999999999998653
No 100
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.68 E-value=0.033 Score=41.56 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=45.3
Q ss_pred ccCCCcccHHHHHHHHHHhhC---CcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 5 LFHDDLADFEDYFPSMINRLG---TEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~---~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
..++|.|+.+||...+....+ ..-...++.+.-+.+|-|++|+|+.+|+..+++..
T Consensus 558 ~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 558 ADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred cCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 567899999999998765432 23334678889999999999999999999998764
No 101
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.24 E-value=0.2 Score=32.20 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 35 NGFQLLMDGEKGLITFESLKRNSLLLGL--NDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 35 ~~F~~~D~~~~g~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
..|..|-......++...+..+++..++ ..++...++.+|..+...+...|+|++|...|...
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455555677788999999999999764 25788999999999877777789999999988653
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.87 E-value=0.083 Score=41.60 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
-+..+|+..|++++|.++.++...++..+.. .+....+..+|++.+...++++...+|+......
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3667888899999999999998888888887 7888888888888877788888888888876553
No 103
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.87 E-value=0.17 Score=43.11 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=62.5
Q ss_pred ccCCCcccHHHHHHHHHHh------hCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCC-CCCHHHHHHHHHhc
Q 044989 5 LFHDDLADFEDYFPSMINR------LGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLN-DMMDDEIMCMLNEG 77 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~------~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~~ 77 (115)
.+.+|++++.+|-..+... +-...+..++.......|++.+|+|+..++...+-.-... -.+.++++..|+.+
T Consensus 2264 kek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2264 KEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRAL 2343 (2399)
T ss_pred hhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHh
Confidence 3568999999998887653 1123334478999999999999999999999888654211 35677899999988
Q ss_pred CCCCCCcccHHHH
Q 044989 78 DLDGDGALSQFEF 90 (115)
Q Consensus 78 d~~~~g~I~~~eF 90 (115)
+. +.-+|+.++.
T Consensus 2344 ~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2344 DA-GKPYVTKEEL 2355 (2399)
T ss_pred hc-CCccccHHHH
Confidence 87 5556666655
No 104
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.76 E-value=0.022 Score=31.67 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=37.3
Q ss_pred cHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC-C---CCCCcccHHHHHHH
Q 044989 29 FISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD-L---DGDGALSQFEFCIL 93 (115)
Q Consensus 29 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d-~---~~~g~I~~~eF~~~ 93 (115)
..+++..+|+.+ .++.++||..+|+..|. +-..+.+..-+..+. . ...|.++|..|+..
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-----PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-----cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 346789999999 88999999999998763 222222222223232 1 22367899988754
No 105
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.70 E-value=0.077 Score=44.94 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=51.6
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 35 NGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 35 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
..|+-+|+++.|.|+..++..++..-. ..++++++-++.-...+.+..++|++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 358899999999999999999997544 578899998888777888999999999988754
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.56 E-value=0.33 Score=31.79 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=55.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCC-----------------------------------------------
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLND----------------------------------------------- 64 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~----------------------------------------------- 64 (115)
.+++-...||.|++|.|+.-|--..++.+|. +
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf-~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGF-GILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCC-CHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 4566667889999999999887666666432 1
Q ss_pred ------CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCChHHHHhh
Q 044989 65 ------MMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLMEGSPEWMIED 112 (115)
Q Consensus 65 ------~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e~~~~~~~~~ 112 (115)
..++..+++|..++....+.+++.|...++... . ..-.+..|+...
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r-~~~D~~GW~a~~ 138 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN-R-NANDPFGWFAAF 138 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-c-ccCCcchhhhhh
Confidence 112457889999988888899999999988752 2 234566676543
No 107
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=94.14 E-value=0.084 Score=35.49 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC-CChHHHHh
Q 044989 68 DEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLME-GSPEWMIE 111 (115)
Q Consensus 68 ~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e-~~~~~~~~ 111 (115)
...+.+|+.+|.+.||.|++.|...+|.++.....+ ..++++++
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mike 143 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKE 143 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 346779999999999999999999999988777766 34555554
No 108
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.89 E-value=0.18 Score=35.00 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=59.2
Q ss_pred ccCCCcccHHHHHHHHHHhhCC--c------CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 5 LFHDDLADFEDYFPSMINRLGT--E------GFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~--~------~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
.+++..++-.+|+....-.+-. . ...++.++.=..+|.|++|.+|..||.....-.+. ...-.++..++..
T Consensus 247 qdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~-~~alne~~~~ma~ 325 (362)
T KOG4251|consen 247 QDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNF-RLALNEVNDIMAL 325 (362)
T ss_pred cCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhh-hhhHHHHHHHHhh
Confidence 3456667777776543211100 0 01123444556789999999999999988654454 5566778888888
Q ss_pred cCCCCCCcccHHHHHH
Q 044989 77 GDLDGDGALSQFEFCI 92 (115)
Q Consensus 77 ~d~~~~g~I~~~eF~~ 92 (115)
-+.+++.+++.++...
T Consensus 326 ~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 326 TDANNDEKLSLEELLE 341 (362)
T ss_pred hccCCCcccCHHHHHH
Confidence 8999999999998765
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.77 E-value=0.81 Score=37.24 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC---------CCCCCHHHHHHHHHhcCCCC
Q 044989 11 ADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG---------LNDMMDDEIMCMLNEGDLDG 81 (115)
Q Consensus 11 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g---------~~~~~~~~~~~~~~~~d~~~ 81 (115)
.+++.|..++.. -.+..++..+|..+-.++.-++|.++|..++..-. ..+..+..+..+++.+..+.
T Consensus 205 f~~e~f~~~l~k----lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNK----LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHh----cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 345566666544 34456789999999999999999999999997731 12567788999999887664
Q ss_pred ----CCcccHHHHHHHHHh
Q 044989 82 ----DGALSQFEFCILMVR 96 (115)
Q Consensus 82 ----~g~I~~~eF~~~l~~ 96 (115)
.|+++-+-|+..+.+
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 789999999998876
No 110
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.02 E-value=0.029 Score=34.16 Aligned_cols=49 Identities=12% Similarity=-0.092 Sum_probs=32.4
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKR 55 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~ 55 (115)
+.|++|.++-.|...+.... .....-+...|+..|.|++|.|+..|...
T Consensus 64 D~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 64 DRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp --T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 46789999999987765433 22233577889999999999999998654
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.94 E-value=1.5 Score=34.97 Aligned_cols=89 Identities=11% Similarity=-0.015 Sum_probs=68.3
Q ss_pred ccccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC
Q 044989 3 ALLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGD 82 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~ 82 (115)
++.+.+|.+++.+-..++...-. .-....+...|+-.|..+++++...++.......+. .+ ++..+|..+..+ .
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~-rp---ev~~~f~~~s~~-~ 218 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK-RP---EVYFLFVQYSHG-K 218 (746)
T ss_pred HccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc-Cc---hHHHHHHHHhCC-C
Confidence 56888999999998888765433 223356778888889999999999999998887764 33 677888777654 7
Q ss_pred CcccHHHHHHHHHhc
Q 044989 83 GALSQFEFCILMVRL 97 (115)
Q Consensus 83 g~I~~~eF~~~l~~~ 97 (115)
+.++.++++.++...
T Consensus 219 ~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 219 EYLSTDDLLRFLEEE 233 (746)
T ss_pred CccCHHHHHHHHHHh
Confidence 788888888888654
No 112
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.33 E-value=0.56 Score=37.97 Aligned_cols=66 Identities=21% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMD-----DEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~-----~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
.+++..|+.+|+...|.++..++..++..+|. +..+ .++..++...|....|++++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~-~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGY-NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc-ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 47889999999999999999999999999997 5553 234445555666667999999999998764
No 113
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=91.68 E-value=0.47 Score=28.57 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=30.8
Q ss_pred hhcCCCCCcccHHHHHHHHHh----------cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 39 LLMDGEKGLITFESLKRNSLL----------LGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 39 ~~D~~~~g~i~~~el~~~l~~----------~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
+||...+.+||.++++.+.+. .|. .++..-+-+++-+....+..-++-.=...++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTge-DiT~~iL~QII~E~E~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGD-DLTRSILLQIIAEEESGGEPVLSTDFLTQII 75 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCc-hhHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 567777777777777777655 243 4555555555555444444445544333343
No 114
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.02 E-value=0.76 Score=33.05 Aligned_cols=61 Identities=15% Similarity=0.037 Sum_probs=46.0
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhc-----CCCCCCHHH-----------HHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 35 NGFQLLMDGEKGLITFESLKRNSLLL-----GLNDMMDDE-----------IMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 35 ~~F~~~D~~~~g~i~~~el~~~l~~~-----g~~~~~~~~-----------~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
..|.+.|.|++|+++-.+|..++..- .. .-.+++ -+.+++..|.|.|.-|+.+||.+.-.+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdp-kNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDP-KNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 46889999999999999998887651 21 111222 244788999999999999999987754
No 115
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=0.28 Score=35.89 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=46.2
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMD-DEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~-~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
..+.+++++.|+.+|+.++|+|+.+-++.++..++. .+++ ..+..+-+..++..-|-|-..+|..
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~-~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR-LVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc-cccCHHHHHHhcCccChhhcceEEeccccc
Confidence 455678999999999999999999999999999884 4444 3344444455555555554444443
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.47 E-value=0.37 Score=34.77 Aligned_cols=57 Identities=7% Similarity=-0.140 Sum_probs=43.3
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
+.|+++.|+-.|+-.+-........+..-.++.|+..|.|++.+|++.|+...|...
T Consensus 343 dkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 343 DKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred cccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 467888888777655544333334556668899999999999999999999888553
No 117
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.08 E-value=0.69 Score=26.12 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred CCCcccHHHHHHHHHHhhCCc-CcHHHHHHHHhhhcCC----CCCcccHHHHHHHHHhc
Q 044989 7 HDDLADFEDYFPSMINRLGTE-GFISELCNGFQLLMDG----EKGLITFESLKRNSLLL 60 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~g~i~~~el~~~l~~~ 60 (115)
+.+.++.++|..++...-... .....+..++..|.++ ..+.+|.+.+...|..-
T Consensus 12 ~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 12 DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 467899999999998765542 3467788888888765 47999999999988653
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=1.8 Score=34.90 Aligned_cols=60 Identities=28% Similarity=0.280 Sum_probs=48.7
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
....|..+ +.+.|+||-.+-+.++-..|. +...+.++....|.|+||+++..||.-.|.-
T Consensus 18 ~~~qF~~L-kp~~gfitg~qArnfflqS~L---P~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 18 HDAQFGQL-KPGQGFITGDQARNFFLQSGL---PTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHhcc-CCCCCccchHhhhhhHHhcCC---ChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 33445554 678999999999999987664 5667899999999999999999999776643
No 119
>PLN02222 phosphoinositide phospholipase C 2
Probab=88.35 E-value=2.9 Score=32.66 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=51.5
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHh
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGL-NDMMDDEIMCMLNEGDL-DGDGALSQFEFCILMVR 96 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~d~-~~~g~I~~~eF~~~l~~ 96 (115)
..+..++..+|..+-. ++.++.++|...|..... ...+.+.+..++..+.. ...+.++++.|..+|..
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3345689999999854 579999999999988642 13567778888887532 34667999999999975
No 120
>PLN02228 Phosphoinositide phospholipase C
Probab=88.08 E-value=3.9 Score=31.85 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=51.9
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC-CCCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhc
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG-LNDMMDDEIMCMLNEGDLD----GDGALSQFEFCILMVRL 97 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~l~~~ 97 (115)
..+..++..+|..+-. ++.++.+++...|.... ....+.+.+..++..+... ..|.++.+.|..+|...
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 4567889999998854 36899999999998863 2134566788888877543 34679999999999653
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.49 E-value=4.2 Score=26.72 Aligned_cols=65 Identities=14% Similarity=-0.066 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC--CCC--CHHHHHHHHHh-cCCCCCCcccHHHHHHHHH
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGL--NDM--MDDEIMCMLNE-GDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~--~~~--~~~~~~~~~~~-~d~~~~g~I~~~eF~~~l~ 95 (115)
+++.++|..+++.+.+.+|..|+..+++.-.. .+. ....++..... +-.+.+|.+..++-..++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcc
Confidence 57899999999999999999999999876211 011 12233332221 2346789999888766553
No 122
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.85 E-value=2.1 Score=33.82 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=60.6
Q ss_pred CCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc---CC----CCCCHHHHHHHHHhcCCC
Q 044989 8 DDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL---GL----NDMMDDEIMCMLNEGDLD 80 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~---g~----~~~~~~~~~~~~~~~d~~ 80 (115)
++ +++++|. ....+...+++..|...|. .+|.++.+++..++... +. .....+....++++.+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8999998 3456777889999999999 99999999988877653 11 133445566788888888
Q ss_pred CCCcccHHHHHHHHHh
Q 044989 81 GDGALSQFEFCILMVR 96 (115)
Q Consensus 81 ~~g~I~~~eF~~~l~~ 96 (115)
..|.+.+.++..++..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 8888887777666653
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.32 E-value=1 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 64 DMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 64 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
-+++++++.+...+-.+..|.|.|.||..-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47899999999999999999999999998775
No 124
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.80 E-value=6.9 Score=30.75 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=49.8
Q ss_pred CcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcC-C-CCCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHHh
Q 044989 26 TEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLG-L-NDMMDDEIMCMLNEGD-------LDGDGALSQFEFCILMVR 96 (115)
Q Consensus 26 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~-~~~~~~~~~~~~~~~d-------~~~~g~I~~~eF~~~l~~ 96 (115)
..++..++..+|..+-.++ +.+|.++|...|.... . ...+..++..++..+- .-+.+.++.+.|..++..
T Consensus 24 ~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 24 ESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3456678999999995444 8999999999998864 2 1235666677765331 123456999999998865
No 125
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=84.12 E-value=5.3 Score=22.06 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 49 TFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 49 ~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
+-+++..++...|. +++..++..+++.-+..+--..+-+.+...+.
T Consensus 15 ~d~~m~~if~l~~~-~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGF-EVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCC-ccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 44567777777787 88888888888876554444444444444443
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.09 E-value=7.2 Score=22.82 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHh-------cCCC---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLL-------LGLN---DMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~g~~---~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
++++.+|+.+ .+++|.++...|...|.. +|.. .-.+..++..|+... ....|+.++|+.-|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5688899999 899999999998887765 3320 124666777777652 4567999999998875
No 127
>PLN02223 phosphoinositide phospholipase C
Probab=81.70 E-value=8.3 Score=29.89 Aligned_cols=69 Identities=10% Similarity=-0.231 Sum_probs=50.2
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHH---Hhc-CCCCCCHHHHHHHHHhcCC--------CCCCcccHHHHHHHH
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNS---LLL-GLNDMMDDEIMCMLNEGDL--------DGDGALSQFEFCILM 94 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l---~~~-g~~~~~~~~~~~~~~~~d~--------~~~g~I~~~eF~~~l 94 (115)
.++.+.+..+|..+ ..++|.++.+.+.+.+ ... |....+.++.+.++...-. ...+.++.+.|..++
T Consensus 12 ~~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 45667899999998 5788999999999998 333 3225667777777664322 123669999999999
Q ss_pred Hh
Q 044989 95 VR 96 (115)
Q Consensus 95 ~~ 96 (115)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 65
No 128
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.68 E-value=0.68 Score=37.56 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=56.7
Q ss_pred CcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 28 GFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 28 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
.....+..+|...|.+.+|.|+..+....+...| ++...+..+....+..+.|.+++++|+-.+...
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3345677899999999999999999999887744 577789999999999999999999998877543
No 129
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.58 E-value=5 Score=22.30 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhc
Q 044989 8 DDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLL 60 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 60 (115)
+..+.|...+..+...++ ...+..+...|+.=..++|+.+||...++.+
T Consensus 6 sp~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456788888888777654 3345555566666678889999988888764
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=78.81 E-value=5.8 Score=22.04 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 45 KGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 45 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
+-.+++..|-.+++. .++....+.+.+.|+.-..++|+-++|+..++...+
T Consensus 6 sp~~~F~~L~~~l~~----~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK----HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 445666666666653 567777888888887778899999999999987544
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.27 E-value=4.1 Score=25.77 Aligned_cols=42 Identities=12% Similarity=-0.035 Sum_probs=26.4
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCC
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEK 45 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 45 (115)
..+..+.|+|+.|..+|...+--.-+.+-...+|..|-....
T Consensus 42 ~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~~ 83 (138)
T PF14513_consen 42 KYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKPP 83 (138)
T ss_dssp GGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-----
T ss_pred ccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 456677899999999998887755555667788888865543
No 132
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=78.13 E-value=10 Score=23.04 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d 78 (115)
+..+|-+++..++...+..+++.+|...|. ...++.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~-E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGA-EIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCc-ccCHHHHHHHHHHhc
Confidence 345677778888889999999999999998 999999999998875
No 133
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=76.38 E-value=5.6 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=18.8
Q ss_pred hhhcCCCCCcccHHHHHHHHHh
Q 044989 38 QLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 38 ~~~D~~~~g~i~~~el~~~l~~ 59 (115)
++||...+.+||.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4688999999999999988875
No 134
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.21 E-value=3.2 Score=31.26 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=62.9
Q ss_pred ccccCCCcccHHHHHHHHHHhhCC---cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh-cCCCCCCHHHHHHHHHhcC
Q 044989 3 ALLFHDDLADFEDYFPSMINRLGT---EGFISELCNGFQLLMDGEKGLITFESLKRNSLL-LGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~d 78 (115)
+-..|+...+-.||+.+-+..... .-..+.++.+-+.+|.+++|.|+.+|=..+++. +.. .-+...-.. .+-
T Consensus 37 a~~agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky-~~~~~kr~~---~fH 112 (575)
T KOG4403|consen 37 AVVAGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKY-RDSTRKRSE---KFH 112 (575)
T ss_pred hhhcCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhc-ccchhhhhh---hcc
Confidence 334667677778886654432221 122356888999999999999999997777765 222 111111111 222
Q ss_pred CCCCCcccHHHHHHHHHhcCc--CccCCChHHHHhhhc
Q 044989 79 LDGDGALSQFEFCILMVRLSP--GLMEGSPEWMIEDLY 114 (115)
Q Consensus 79 ~~~~g~I~~~eF~~~l~~~~~--~~~e~~~~~~~~~~~ 114 (115)
..|..|+.++.-..+....- =-.|..-+||.+..+
T Consensus 113 -~dD~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~~Ve 149 (575)
T KOG4403|consen 113 -GDDKHITVEDLWEAWKESEVHNWTNERTVQWLINDVE 149 (575)
T ss_pred -CCccceeHHHHHHHHHhhhhhcchHHHHHHHHHHhcc
Confidence 25677999988887754211 112355677766543
No 135
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.16 E-value=5.7 Score=30.61 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=36.1
Q ss_pred CcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 9 DLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 9 g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
|.|+-..-.+++.+ ..-+..++..++.+.|.+.+|-+|..||..++-.
T Consensus 246 gfisGsaAknFFtK---Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 246 GFISGSAAKNFFTK---SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccccHHHHhhhhh---ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 44444444444443 3556789999999999999999999999998755
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=76.05 E-value=12 Score=29.41 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCc
Q 044989 44 EKGLITFESLKRNSLLLGL-NDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
+.|.++.+++..+.+.+.. ......++..+|..+..+ .+.++.++|...+.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 4689999999877776642 123678999999999654 368999999999987544
No 137
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=73.25 E-value=17 Score=22.22 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.3
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
+..+|-+.-..++..+|.+++..++...|. .+....+..+++.+.. .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGv-eVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNA-DVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344556666777888999999999999998 8998888888887742 45565554
No 138
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=72.32 E-value=6.3 Score=30.83 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCC-CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDM-MDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~-~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
+.+..+|..||.+++|.+...|+..++...+..+= ...+.+... .+..|.++++-|...+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~----~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV----KNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce----ecccceeehhhHHHHHH
Confidence 46788999999999999999999999988753120 001111111 12678899998887664
No 139
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.48 E-value=7.3 Score=22.71 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=13.3
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 66 MDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 66 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
++.+...++..+........++.+|...+.
T Consensus 35 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 35 DAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444444433333444455544443
No 140
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=68.15 E-value=6.9 Score=28.72 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcC--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLG--LNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+++.+|+.+-.+.++......+...-..+. +.++=..++-.||..+|.+.|+.++-.|...+-..
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 578899999888888777766665533321 11455788999999999999999999998776643
No 141
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.82 E-value=8.4 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
+.++...||.+++|.|+.-+++.++..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 567889999999999999888887754
No 142
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=67.48 E-value=22 Score=20.60 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 46 GLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 46 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
..||.+||.......|. +++..+++.++.....+.-.-.+-++=..++
T Consensus 13 n~iT~~eLlkyskqy~i-~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNI-SITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 45788888888888888 8888888888877655443333333333333
No 143
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=67.36 E-value=28 Score=23.52 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHH-HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 044989 8 DDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFES-LKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALS 86 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e-l~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~ 86 (115)
+|+|+.+++..++.......+ .. .+++.=-++.|+..+ +..++..++. +. ++-++-+.+....+ -.
T Consensus 11 DGTITl~Ds~~~itdtf~~~e----~k---~l~~~vls~tiS~rd~~g~mf~~i~~-s~-~Eile~llk~i~Id----p~ 77 (220)
T COG4359 11 DGTITLNDSNDYITDTFGPGE----WK---ALKDGVLSKTISFRDGFGRMFGSIHS-SL-EEILEFLLKDIKID----PG 77 (220)
T ss_pred CCceEecchhHHHHhccCchH----HH---HHHHHHhhCceeHHHHHHHHHHhcCC-CH-HHHHHHHHhhcccC----cc
Confidence 799999999999887765332 22 334455577787755 6666666664 33 33344444434433 34
Q ss_pred HHHHHHHHHh
Q 044989 87 QFEFCILMVR 96 (115)
Q Consensus 87 ~~eF~~~l~~ 96 (115)
+.+|+.-+..
T Consensus 78 fKef~e~ike 87 (220)
T COG4359 78 FKEFVEWIKE 87 (220)
T ss_pred HHHHHHHHHH
Confidence 6677766643
No 144
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.07 E-value=14 Score=18.37 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHhhhcC--CCCCcccHHHHHHHHHh
Q 044989 32 ELCNGFQLLMD--GEKGLITFESLKRNSLL 59 (115)
Q Consensus 32 ~~~~~F~~~D~--~~~g~i~~~el~~~l~~ 59 (115)
.+..+|+.|-. .....++..|++.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45666776652 34566777777777653
No 145
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=66.39 E-value=27 Score=21.18 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=41.8
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
..+|-+.-..++..+|.+++..++...|. .+....+..+++.+.. .+.++.+.--
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGv-eVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGV-EVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 34555666778889999999999999998 8888888888887642 4556666543
No 146
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=65.50 E-value=3.2 Score=27.50 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=35.7
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccCCChHHHHhh
Q 044989 56 NSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLMEGSPEWMIED 112 (115)
Q Consensus 56 ~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e~~~~~~~~~ 112 (115)
.+..++. .+++++++.+..-+.. +--.++|..|..++-++..+....-..||+|+
T Consensus 86 ~~~~L~~-~Lt~~Qie~vkd~mTy-g~v~~T~k~y~~mvP~Lteeek~~I~~~L~eA 140 (188)
T PF12875_consen 86 YMAKLSK-YLTEEQIEQVKDGMTY-GVVPFTYKGYLDMVPSLTEEEKAQILTWLKEA 140 (188)
T ss_dssp HHHHHTT-T--HHHHHHHHHHCTT-THHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcCHHHHHHHHccccc-eehhhhHHHHHHHcCcccHHHHHHHHHHHHHH
Confidence 3455676 8999999999887653 23347888888888766665555668888876
No 147
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=65.43 E-value=7.6 Score=30.66 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=41.3
Q ss_pred cccCCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHH
Q 044989 4 LLFHDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESL 53 (115)
Q Consensus 4 ~~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el 53 (115)
+.+++|.++|.+++..+..... .+..+.+.-.|+.+|.+++ ..+.++.
T Consensus 565 D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 565 DDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred ccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4578899999999999877655 6667889999999999999 9998887
No 148
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.98 E-value=20 Score=19.60 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
..+-.|+.+.++..+.+.|. .+|+..+.++.+..
T Consensus 27 ~~NPpine~mir~M~~QMG~-kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 27 KENPPINEKMIRAMMMQMGR-KPSEKQIKQMMRSM 60 (64)
T ss_pred HHCCCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 34667999999999999998 99999999988754
No 149
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=64.68 E-value=15 Score=20.92 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLME 103 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e 103 (115)
-+.|.||.++...+-.. +.+.+....++.... ..|...+.-|+..+....|.+.+
T Consensus 25 ~~~~Vit~e~~~~I~a~----~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 25 HGKKVITQEQYSEVRAE----KTNQEKMRKLFSFVR--SWGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HHCCCCCHHHHHHHHcC----CCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhChHHHh
Confidence 45678888887776642 456777788777654 46778899999999877665543
No 150
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=64.32 E-value=11 Score=15.84 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=4.2
Q ss_pred CCCCcccHHH
Q 044989 43 GEKGLITFES 52 (115)
Q Consensus 43 ~~~g~i~~~e 52 (115)
|++|.|+.-+
T Consensus 3 N~DG~vna~D 12 (21)
T PF00404_consen 3 NGDGKVNAID 12 (21)
T ss_dssp TSSSSSSHHH
T ss_pred CCCCcCCHHH
Confidence 4444444433
No 151
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=63.15 E-value=25 Score=25.50 Aligned_cols=15 Identities=27% Similarity=-0.002 Sum_probs=6.3
Q ss_pred CCcccHHHHHHHHHh
Q 044989 45 KGLITFESLKRNSLL 59 (115)
Q Consensus 45 ~g~i~~~el~~~l~~ 59 (115)
+|.||++|-...+..
T Consensus 300 ~G~itReeal~~v~~ 314 (343)
T TIGR03573 300 SGRITREEAIELVKE 314 (343)
T ss_pred cCCCCHHHHHHHHHH
Confidence 344444444443333
No 152
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=62.80 E-value=37 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=24.4
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 044989 41 MDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 41 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d 78 (115)
..+.+|++..++|...+..-+. .++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~-~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGL-WVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-T-T--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCC-CCCHHHHHHHHhhCC
Confidence 4788999999999999988776 788999999987533
No 153
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=59.84 E-value=14 Score=20.05 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDG 81 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~ 81 (115)
..++.++..++...+...|. .+++..+...++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~-~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGE-ELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcCh-hhhHHHHHHHHHHHHHCC
Confidence 45678899999999988887 888899988888776443
No 154
>PRK00523 hypothetical protein; Provisional
Probab=58.52 E-value=28 Score=19.47 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
..+-.|+.+-++..+.+.|. .+|+..++++.+..
T Consensus 35 ~~NPpine~mir~M~~QMGq-KPSekki~Q~m~~m 68 (72)
T PRK00523 35 RENPPITENMIRAMYMQMGR-KPSESQIKQVMRSV 68 (72)
T ss_pred HHCcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 34667899999999999998 99999999988765
No 155
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=57.72 E-value=44 Score=20.84 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=58.3
Q ss_pred CCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----------
Q 044989 8 DDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG---------- 77 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~---------- 77 (115)
....+.++++.++-.. ...++.-.|.++. .+|.+|.+++...+ +.+...++..++.+
T Consensus 10 ~~~~~~~dvl~c~~GL-----s~~Dv~v~~~LL~--~~~~~tvdelae~l------nr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 10 RKEFRCEDVLKCVYGL-----SELDVEVYKALLE--ENGPLTVDELAEIL------NRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred cccCcHHHHHHHHhCC-----cHHHHHHHHHHHh--hcCCcCHHHHHHHH------CccHHHHHHHHHHHHHcCCeeeee
Confidence 3346777777766221 1234444444443 78999999999888 55666665555421
Q ss_pred -CCCCCC------cccHHHHHHHHHhcCcCccCCChHHHHhhh
Q 044989 78 -DLDGDG------ALSQFEFCILMVRLSPGLMEGSPEWMIEDL 113 (115)
Q Consensus 78 -d~~~~g------~I~~~eF~~~l~~~~~~~~e~~~~~~~~~~ 113 (115)
...+.| .+++++....+.....+..+...+|++++.
T Consensus 77 ~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~~i~~~~ 119 (126)
T COG3355 77 VNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQLIEEFE 119 (126)
T ss_pred eccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112223 378999988887766666667777877764
No 156
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=56.07 E-value=48 Score=25.93 Aligned_cols=55 Identities=9% Similarity=-0.115 Sum_probs=42.8
Q ss_pred ccCCCcccHHHHHHHHHHhhCC--cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 5 LFHDDLADFEDYFPSMINRLGT--EGFISELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 5 ~~~~g~i~~~eFl~~~~~~~~~--~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
-+++|+|+..+....+...-.. .-..++++.+....+.+.+|.++++++..++..
T Consensus 29 d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 29 DDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3678999999999888754221 122467889999999999999999999886644
No 157
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=53.49 E-value=16 Score=26.51 Aligned_cols=47 Identities=26% Similarity=0.242 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 49 TFESLKRNSLLL-GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 49 ~~~el~~~l~~~-g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+.++|+.+.... |. ....-.-...|..+|.|+||.++-.|.-.++..
T Consensus 225 SkdQLkEVWEE~DgL-dpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGL-DPNQFDPKTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred cHHHHHHHHHHhcCC-CcccCCcchheeeeccCCcccccHHHHHHHHHH
Confidence 577888888776 44 444445567899999999999999998888865
No 158
>PRK01844 hypothetical protein; Provisional
Probab=53.32 E-value=36 Score=19.04 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
..+-.|+.+-++..+.+.|. .+|+..++++.+..
T Consensus 34 k~NPpine~mir~Mm~QMGq-kPSekki~Q~m~~m 67 (72)
T PRK01844 34 QKNPPINEQMLKMMMMQMGQ-KPSQKKINQMMSAM 67 (72)
T ss_pred HHCCCCCHHHHHHHHHHhCC-CccHHHHHHHHHHH
Confidence 34567899999999999998 99999999988765
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=52.49 E-value=17 Score=20.53 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=22.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLD 80 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~ 80 (115)
...|+||.+++..+|... .++...++.++..+...
T Consensus 17 K~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 17 KKKGYLTYDEINDALPED---DLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHSS-BHHHHHHH-S-S------HHHHHHHHHHHHTT
T ss_pred hhcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHHHC
Confidence 468899999999988632 46778888888766433
No 160
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.28 E-value=40 Score=18.76 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=28.8
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
..+-.|+.+-++..+.+.|. .+|+..++++++..
T Consensus 34 k~NPpine~~iR~M~~qmGq-KpSe~kI~Qvm~~i 67 (71)
T COG3763 34 KDNPPINEEMIRMMMAQMGQ-KPSEKKINQVMRSI 67 (71)
T ss_pred hhCCCCCHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 45667899999999999997 99999999988754
No 161
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=51.67 E-value=58 Score=27.05 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=40.0
Q ss_pred CcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHH
Q 044989 9 DLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKR 55 (115)
Q Consensus 9 g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~ 55 (115)
|.++|.+|...|.+.....+...++..+|..+-+.+. ++..++|..
T Consensus 803 ~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 803 GQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred cceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7899999999999988888888899999998877666 888888776
No 162
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=51.57 E-value=46 Score=19.19 Aligned_cols=9 Identities=11% Similarity=0.051 Sum_probs=3.8
Q ss_pred CCcccHHHH
Q 044989 8 DDLADFEDY 16 (115)
Q Consensus 8 ~g~i~~~eF 16 (115)
||.++-+|-
T Consensus 13 DG~v~~~E~ 21 (106)
T cd07316 13 DGRVSEAEI 21 (106)
T ss_pred cCCcCHHHH
Confidence 444444443
No 163
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=50.33 E-value=26 Score=17.99 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDL 79 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~ 79 (115)
.+|.|+..++++.+ +++...+-.+++.+|.
T Consensus 7 ~~~~itv~~~rd~l------g~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 7 KNGEITVAEFRDLL------GLSRKYAIPLLEYLDR 36 (50)
T ss_dssp TTSSBEHHHHHHHH------TS-HHHHHHHHHHHHH
T ss_pred cCCcCcHHHHHHHH------CccHHHHHHHHHHHhc
Confidence 37888888888877 4566666666666653
No 164
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.11 E-value=33 Score=17.13 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 50 FESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 50 ~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
.+|...+|..+|+ +..++..+++.... ...++.++.++
T Consensus 3 ~~d~~~AL~~LGy---~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLGY---SKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 3577788888886 77788887776643 23344555544
No 165
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=49.91 E-value=52 Score=19.32 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=34.5
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
-++|.+|.++...+-.. +.+.+.+..++... ..-|.-.|..|+..+..
T Consensus 31 ~~~gIlT~~~~e~I~a~----~T~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e 78 (94)
T cd08327 31 YQEGILTESHVEEIESQ----TTSRRKTMKLLDIL--PSRGPKAFHAFLDSLEE 78 (94)
T ss_pred HhCCCCCHHHHHHHHcc----CChHHHHHHHHHHH--HhhChhHHHHHHHHHHH
Confidence 45789998887776642 45666777777664 35577889999999953
No 166
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=49.90 E-value=52 Score=21.74 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=28.4
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 41 MDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 41 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
..+.+|++..++|...++.-+. .++.+++.++...
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~-~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYK-WVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccC-CCCHHHHHHHHHc
Confidence 3578999999999998876554 6888999988874
No 167
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=48.95 E-value=26 Score=22.48 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHh
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 59 (115)
..+..-....|.++.+++|.++|++++-.
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 34555567788899999999999998744
No 168
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=48.06 E-value=37 Score=17.11 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
...+...|.. +.+.+..++..+...+| ++...|...|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 3456677775 66889999988888877 477888888874
No 169
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=47.07 E-value=31 Score=15.96 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHhcCCCCCC
Q 044989 47 LITFESLKRNSLLLGLNDMM 66 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~ 66 (115)
.++.++|+..++..|. +.+
T Consensus 3 ~l~~~~Lk~~l~~~gl-~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGL-STS 21 (35)
T ss_pred cCcHHHHHHHHHHcCC-CCC
Confidence 4677888888888776 443
No 170
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=47.07 E-value=65 Score=19.64 Aligned_cols=51 Identities=25% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 36 GFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 36 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
+|-+.-..++..+|.+++..++...|. .+....+..+++.+.. .+.++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGv-evd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGA-DADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCC-cccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344444566778999999999999997 8888888888877642 44555553
No 171
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=45.74 E-value=38 Score=22.64 Aligned_cols=71 Identities=18% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHHHhcCcCcc
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG----DLDGDGALSQFEFCILMVRLSPGLM 102 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~~l~~~~~~~~ 102 (115)
.+.++++|..||..+--..|-+++.+++...|+ -.....++.++... .... ..=+|.+|+..+....|...
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gI-IR~r~KI~A~i~NA~~~l~l~~-e~Gsf~~flWsf~~~~~~~~ 128 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGI-IRNRGKIKATINNARAVLELQK-EFGSFSEFLWSFVGGKPSRN 128 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch-hhhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHhcCCCcccc
Confidence 456999999999999999999999999998886 44444554444321 1111 11256777776665544443
No 172
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=45.72 E-value=29 Score=16.22 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHhcCCCCCC
Q 044989 47 LITFESLKRNSLLLGLNDMM 66 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~ 66 (115)
.++..|++..++..|. +.+
T Consensus 3 ~l~v~eLk~~l~~~gL-~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGL-STS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS--ST
T ss_pred cCcHHHHHHHHHHCCC-CCC
Confidence 4677788888888776 443
No 173
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=38 Score=25.55 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=41.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 33 LCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 33 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
+.++|-.+ ..-+|+|+-..-+..+... .+++..+-.+.+..|.+.||.++-+||.-
T Consensus 446 yde~fy~l-~p~~gk~sg~~ak~~mv~s---klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTL-SPVNGKLSGRNAKKEMVKS---KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcc-cccCceeccchhHHHHHhc---cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34455544 3457888877666666442 56788899999999999999999999954
No 174
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=44.47 E-value=46 Score=18.74 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 044989 50 FESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGAL 85 (115)
Q Consensus 50 ~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I 85 (115)
...+..++.++|. +.++..++..+..+..+.+-.+
T Consensus 5 ~h~l~~LF~QLGL-~~~~~~I~~FI~~H~L~~~~~L 39 (74)
T PF10982_consen 5 QHTLSNLFAQLGL-DSSDEAIEAFIETHQLPADVHL 39 (74)
T ss_dssp -THHHHHHHHHTS----HHHHHHHHHHS---TTS-S
T ss_pred CCCHHHHHHHhCC-CCCHHHHHHHHHhCCCCCCCcc
Confidence 3457788889998 8889999999888775554433
No 175
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=44.03 E-value=33 Score=26.49 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=44.5
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHH---hcCC-----CCCCcccHHHHHHHHH
Q 044989 35 NGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLN---EGDL-----DGDGALSQFEFCILMV 95 (115)
Q Consensus 35 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~---~~d~-----~~~g~I~~~eF~~~l~ 95 (115)
-+|..|-..+++.++.--|..+|+++|. .-++.-+..++. .++. ...+.++.+.|.+.+.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGL-rtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGL-RTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCC-CcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4688887777899999999999999998 666666655543 2332 2345688888888764
No 176
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=43.72 E-value=45 Score=19.19 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 48 ITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 48 i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
||.+++..+...... .+++++++.+.+.
T Consensus 1 i~~~~v~~lA~La~L-~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARL-ELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 466777777777777 7888887665543
No 177
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=43.26 E-value=49 Score=17.74 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHH
Q 044989 47 LITFESLKRNSLLLGLNDMMDDEIMCM 73 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~~~~~~~~ 73 (115)
.|+.++|..+++.... .++..+++..
T Consensus 29 ~it~~DF~~Al~~~kp-SVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKP-SVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGG-SS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 4778888888888776 7777776643
No 178
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.92 E-value=83 Score=19.68 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
..++..+-...++.+|.+++...++.-+. .++...+...++.
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~-~i~~aTVYR~L~~ 61 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE-EIGLATVYRVLNQ 61 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCC-CCCHHHHHHHHHH
Confidence 34555554556678999999999998886 7777777776653
No 179
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=42.69 E-value=70 Score=25.38 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHh-cCCCCCCHHHHHHHH
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLL-LGLNDMMDDEIMCML 74 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~ 74 (115)
..+.++|++.|.+.+|.++-.|+...-.. ++. +++..+++.+-
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~-pl~p~~l~~vk 238 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNT-PLDPQELEDVK 238 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCC-CCCHHHHHHHH
Confidence 45788999999999999999998876544 465 77776665543
No 180
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=42.16 E-value=31 Score=15.91 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=9.6
Q ss_pred CCcccHHHHHHHHHH
Q 044989 8 DDLADFEDYFPSMIN 22 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~ 22 (115)
.|.|++++++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777666544
No 181
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=42.04 E-value=14 Score=25.09 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=39.4
Q ss_pred HHhhhcC-CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 36 GFQLLMD-GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 36 ~F~~~D~-~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
-|-.+|. ..+|+++-.||.-+- ..- -+.+.-+...|..+|.++|+.|+.+|+-..+.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~-ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLR-APL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCcccccccccccccc-CCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4566664 458888877765432 111 12344567789999999999999999987663
No 182
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=41.74 E-value=35 Score=20.20 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCccC
Q 044989 45 KGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLME 103 (115)
Q Consensus 45 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~e 103 (115)
...+|.+++..++...|. .---..-...++....+....++-++.+.+|.. .|.+++
T Consensus 33 ~~p~s~~eL~~~l~~~g~-~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~-~p~Lik 89 (105)
T cd03035 33 KDGLDAATLERWLAKVGW-ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE-HPSLIK 89 (105)
T ss_pred cCCCCHHHHHHHHHHhCh-HHHHccCchHHHhCChhhhccCCHHHHHHHHHh-CcCeee
Confidence 455788888888877662 000000112344444332245778888888865 455544
No 183
>PHA02105 hypothetical protein
Probab=40.91 E-value=59 Score=17.41 Aligned_cols=49 Identities=14% Similarity=-0.084 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCC--CCcccHHHHHHHHH
Q 044989 47 LITFESLKRNSLLLGL--NDMMDDEIMCMLNEGDLDG--DGALSQFEFCILMV 95 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~~d~~~--~g~I~~~eF~~~l~ 95 (115)
++|.++++.++..-.. .++..+-++++-..+.... --.++|+||..+|-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 4677788777765321 2555555666555555443 34579999988773
No 184
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=40.70 E-value=26 Score=20.05 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 66 MDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 66 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
++.+...+--..+.-..|+|+.+.|+..+.
T Consensus 17 ~e~E~~tm~yyl~eY~~~~~tVealV~aL~ 46 (81)
T cd07357 17 SENERATLSYYLDEYRSGHISVDALVMALF 46 (81)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 444444444333433445555555555443
No 185
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=40.69 E-value=60 Score=17.44 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHH
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCM 73 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~ 73 (115)
..+|.+| .+++|.|+..++...| .+++..+...
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~L------gvs~~tIr~W 42 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKL------GVSESTIRKW 42 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHH------CCCHHHHHHH
Confidence 4566666 6789999988887766 4566666554
No 186
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=40.17 E-value=61 Score=17.31 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=15.5
Q ss_pred CcHHHHHHHHhhh--cCCCCCcccHHHHHHHHHh
Q 044989 28 GFISELCNGFQLL--MDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 28 ~~~~~~~~~F~~~--D~~~~g~i~~~el~~~l~~ 59 (115)
-+.++++...+.| ++ +...+|.++++..|..
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 4456666666666 22 3344666666666644
No 187
>PF15565 Imm16: Immunity protein 16
Probab=39.53 E-value=65 Score=19.45 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCcCccCCCh-HHHHh
Q 044989 88 FEFCILMVRLSPGLMEGSP-EWMIE 111 (115)
Q Consensus 88 ~eF~~~l~~~~~~~~e~~~-~~~~~ 111 (115)
+++...+...-|.++..++ .|-+=
T Consensus 63 ~~~l~~l~~~~p~m~~~A~keWa~i 87 (106)
T PF15565_consen 63 EEYLPALAEAIPQMMINAPKEWAKI 87 (106)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5566666666777777775 77543
No 188
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.50 E-value=22 Score=29.24 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=52.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
..+...|+..|..++|.|+..+...++..-| +....+-++....|..+.|.++..+|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchH
Confidence 4577899999999999999999888887655 56777788888888888899999999887654
No 189
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=38.36 E-value=13 Score=22.78 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=20.8
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 44 EKGLITFESLKRNSLLL--GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
.||.++.+|...+...+ .. .++..+...+...++.......++.+|+..+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERF-GLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCG-CGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 46666666655444433 11 2333444444443333223344445554444
No 190
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=37.67 E-value=65 Score=18.51 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 47 LITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
.|+.++++.+...... .+++++++.+.+.
T Consensus 2 ~i~~e~i~~la~La~l-~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARL-ELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3677888888877777 7888777665543
No 191
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=37.47 E-value=80 Score=20.09 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CC----CcccHHHHHHHHHh
Q 044989 48 ITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLD-GD----GALSQFEFCILMVR 96 (115)
Q Consensus 48 i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~-~~----g~I~~~eF~~~l~~ 96 (115)
.|.++++.+..-... ++++++++.+++..+.- .+ ..|+..--..++..
T Consensus 27 WT~eDV~~~a~gme~-~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~ 79 (139)
T PF07128_consen 27 WTREDVRALADGMEY-NLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIRE 79 (139)
T ss_pred ecHHHHHHHHhcCCC-CCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHH
Confidence 467888888776666 78999999999887642 22 34766555555544
No 192
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=37.33 E-value=1.5e+02 Score=20.88 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCCCCcccHHHHHHHHHhc--CCCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 42 DGEKGLITFESLKRNSLLL--GLNDMMDDE---IMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 42 ~~~~g~i~~~el~~~l~~~--g~~~~~~~~---~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
...||.+|..|+. ..+.+ .. .++.++ +..+|+.. .....++.+|+..+....
T Consensus 66 AkADG~Vse~Ei~-~~~~l~~~~-~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 66 AKAKGRVTEADIR-IASQLMDRM-NLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVC 122 (267)
T ss_pred HhcCCCcCHHHHH-HHHHHHHHc-CCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHh
Confidence 4679999999987 33332 12 346665 44555543 344478899988886543
No 193
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=35.89 E-value=48 Score=19.65 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC---CcccHHHHHHHHHh
Q 044989 48 ITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGD---GALSQFEFCILMVR 96 (115)
Q Consensus 48 i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~---g~I~~~eF~~~l~~ 96 (115)
+...++.-++..+.. .++++++.++...+...+. ..++...++.-++.
T Consensus 20 vP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~ 70 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTD 70 (96)
T ss_dssp B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCS
T ss_pred CCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Confidence 555666666666665 6777777776665532222 33444444444433
No 194
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.69 E-value=60 Score=18.01 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=12.0
Q ss_pred CCCCcccHHHHHHHHHh
Q 044989 43 GEKGLITFESLKRNSLL 59 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~ 59 (115)
-..|++.-+|+.+++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 45777888887777754
No 195
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.01 E-value=93 Score=17.93 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=32.5
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+.|.+|.++...+-.. +.+.+....++.... .-|.-.|..|+.++..
T Consensus 31 ~~gvlt~~~~~~I~~~----~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 31 QKDILTDSMAESIMAK----PTSFSQNVALLNLLP--KRGPRAFSAFCEALRE 77 (90)
T ss_pred HcCCCCHHHHHHHHcC----CCcHHHHHHHHHHHH--HhChhHHHHHHHHHHh
Confidence 3688888886666542 445666777766643 4566789999999965
No 196
>PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer. The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D.
Probab=34.78 E-value=42 Score=14.36 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCcCccCCCh
Q 044989 88 FEFCILMVRLSPGLMEGSP 106 (115)
Q Consensus 88 ~eF~~~l~~~~~~~~e~~~ 106 (115)
++|..++.+.....+++.+
T Consensus 2 e~f~~li~~~Q~~RmddQR 20 (23)
T PF02188_consen 2 EDFFDLIARVQSSRMDDQR 20 (23)
T ss_dssp HHHHHHHHCCCCCCGCSSS
T ss_pred hHHHHHHHHHHhcchhhhc
Confidence 5688888777666666543
No 197
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=33.94 E-value=86 Score=17.23 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHHhhCCcCcHHHHHH
Q 044989 11 ADFEDYFPSMINRLGTEGFISELCN 35 (115)
Q Consensus 11 i~~~eFl~~~~~~~~~~~~~~~~~~ 35 (115)
.+|++|...+......+.....+..
T Consensus 27 ~~W~~~~~~~~~~f~~~~~~~~~~~ 51 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPDRKEQARQ 51 (96)
T ss_pred CCHHHHHHHHHHHHhhhhccccchh
Confidence 4677777766655443333333333
No 198
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.83 E-value=67 Score=20.58 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=41.9
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 34 CNGFQLLMDGEKGLITFESLKRNSLLL--GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 34 ~~~F~~~D~~~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
.-+|++.+. +|.++..|.......+ .. .++..++..++.....-+...+++-.|...+.+
T Consensus 33 ~Llf~Vm~A--DG~v~~~E~~a~r~il~~~f-~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 33 ALLFHVMEA--DGTVSESEREAFRAILKENF-GIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHHhc--ccCcCHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 367888754 5666666644433222 23 578899999998877777778999999888875
No 199
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=33.55 E-value=1e+02 Score=17.88 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=30.4
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
-++|.|+.++...+... +.+.+.++.++... ...|....+-|..++..
T Consensus 25 l~n~~it~E~y~~V~a~----~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e 72 (85)
T cd08324 25 LKNDYFSTEDAEIVCAC----PTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQ 72 (85)
T ss_pred hccCCccHHHHHHHHhC----CCCHHHHHHHHHHH--HhcCchHHHHHHHHHHH
Confidence 45778888887766643 55667777776653 33455556667776654
No 200
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=33.40 E-value=81 Score=16.78 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=20.9
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 46 GLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 46 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
-.+|.+|+...+..++. .++..++..+....
T Consensus 8 ~~lTeEEl~~~i~~L~~-~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDE-IPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 45677777777777775 67766666665543
No 201
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.19 E-value=74 Score=18.21 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=30.9
Q ss_pred HHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 50 FESLKRNSLLL-GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 50 ~~el~~~l~~~-g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
..--..+|+.- |- .++++-.+.+-+.++......|+|+|.|.+-..
T Consensus 31 l~~Q~~WLskeRgG-~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 31 LQFQATWLSKERGG-QIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred hHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33334566543 43 677777777777777777778999999886543
No 202
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.82 E-value=31 Score=21.81 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.3
Q ss_pred HhcCCCCCCcccHHHHHHHHHh
Q 044989 75 NEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 75 ~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
.....+..|+.+|+||+..+..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 3445567899999999998854
No 203
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.62 E-value=57 Score=29.00 Aligned_cols=68 Identities=6% Similarity=0.048 Sum_probs=47.5
Q ss_pred cCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 27 EGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMM----DDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 27 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~----~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
++..++..++...||++..|.|...++...++.+.. ++. .+. ..+--......+|.|++.+-..++..
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~p-pL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDP-PLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCC-ccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 445578899999999999999999999999999753 332 111 21222233447788888877666654
No 204
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=31.49 E-value=1.3e+02 Score=19.03 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=30.1
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDL 79 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~ 79 (115)
..+...|.+|+...|+..|. .++...+...++....
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~-~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGI-EVTQATVSRDLRELGA 47 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCC-CcCHHHHHHHHHHcCC
Confidence 45667899999999999998 8999999888887653
No 205
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=31.37 E-value=98 Score=21.07 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=12.6
Q ss_pred CCCcccHHHHHHHHHHhh
Q 044989 7 HDDLADFEDYFPSMINRL 24 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~ 24 (115)
..|.++|..++.-|....
T Consensus 174 d~geldFn~iL~~Mk~~~ 191 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQV 191 (246)
T ss_pred hcCCCcHHHHHHHHHHhh
Confidence 456788888887776653
No 206
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.04 E-value=97 Score=16.94 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhc----CCCCCCHHHHHHHHHhc
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLL----GLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~~ 77 (115)
..+..+...++.+..--+-..+++.++..+ |. ..+++-++.+|+.+
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~-~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGE-VVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTS-S--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHhh
Confidence 345556666655555556667777776664 65 66777788888765
No 207
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.03 E-value=91 Score=18.55 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=25.6
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 36 GFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 36 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
++..+..... .+|.+++...++..+. .++...+...++.
T Consensus 13 Il~~l~~~~~-~~ta~ei~~~l~~~~~-~is~~TVYR~L~~ 51 (120)
T PF01475_consen 13 ILELLKESPE-HLTAEEIYDKLRKKGP-RISLATVYRTLDL 51 (120)
T ss_dssp HHHHHHHHSS-SEEHHHHHHHHHHTTT-T--HHHHHHHHHH
T ss_pred HHHHHHcCCC-CCCHHHHHHHhhhccC-CcCHHHHHHHHHH
Confidence 3444433333 8999999999998886 7877777666553
No 208
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=30.22 E-value=1.3e+02 Score=18.04 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC---CCCCCcccHHHHHHHHHhc
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD---LDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d---~~~~g~I~~~eF~~~l~~~ 97 (115)
..+..-|..+-. +|.++.+.+..++ |. +-+.+-..++|..+. .-..+.|+.+|+..++...
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM-~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GM-KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CC-cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 345556776655 9999999988776 65 445666666665321 2235779999998887653
No 209
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=29.70 E-value=94 Score=16.37 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d 78 (115)
+-+..+|.... ..+.++..++.+.| +++...+..+++.+.
T Consensus 8 ~YL~~Iy~l~~--~~~~v~~~~iA~~L------~vs~~tvt~ml~~L~ 47 (60)
T PF01325_consen 8 DYLKAIYELSE--EGGPVRTKDIAERL------GVSPPTVTEMLKRLA 47 (60)
T ss_dssp HHHHHHHHHHH--CTSSBBHHHHHHHH------TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCccHHHHHHHH------CCChHHHHHHHHHHH
Confidence 34667777765 78889999998888 577778888887664
No 210
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.49 E-value=1.4e+02 Score=18.45 Aligned_cols=70 Identities=17% Similarity=0.066 Sum_probs=42.8
Q ss_pred HhhCCcCcHH-HHHHHHhhhcCCCCCcccHHHHHHHHHhc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 22 NRLGTEGFIS-ELCNGFQLLMDGEKGLITFESLKRNSLLL--GLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 22 ~~~~~~~~~~-~~~~~F~~~D~~~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
+.+.+.+..+ .+...|.-+...+.++|+..-+.....-+ |. ..+.+.+..++...-.+..=-|...+|..
T Consensus 11 r~l~eddkvq~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y-~~~rE~i~~VIetll~~~~f~V~~~d~i~ 83 (130)
T COG5611 11 RFLSEDDKVQTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGY-KWEREDIYEVIETLLNDELFNVELKDFIR 83 (130)
T ss_pred HHHhhhhhHHHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhccccceecchHHHH
Confidence 3333344443 37778888888999999988777766554 54 56777777777633222222244445443
No 211
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=29.47 E-value=1.2e+02 Score=17.56 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 46 GLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 46 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
-.|+-.++++.+...-. -.+..+...+=...|...+++||--||-...+
T Consensus 21 ~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 45777788887777542 23334445555566777788888777765554
No 212
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=29.02 E-value=37 Score=27.37 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=46.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHH---------HHHHHHhcCCCCC--------------------
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDE---------IMCMLNEGDLDGD-------------------- 82 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~---------~~~~~~~~d~~~~-------------------- 82 (115)
....+|..+|.+.++++++.++.......|. -+-..+ ...+++.+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~-vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~ 516 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGN-VVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLK 516 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHH-HHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccc
Confidence 4567899999999999999888877766553 222212 3446777787777
Q ss_pred ---CcccHHHHHHHHH
Q 044989 83 ---GALSQFEFCILMV 95 (115)
Q Consensus 83 ---g~I~~~eF~~~l~ 95 (115)
|.++.+|.+.++.
T Consensus 517 ~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 517 KSFGVVTVDELVALLA 532 (975)
T ss_pred cccCeeEHHHHHHHHH
Confidence 8899999988876
No 213
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=28.89 E-value=1.6e+02 Score=18.69 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH----------hcCCCCCCcccHHHHHH
Q 044989 53 LKRNSLLLGLNDMMDDEIMCMLN----------EGDLDGDGALSQFEFCI 92 (115)
Q Consensus 53 l~~~l~~~g~~~~~~~~~~~~~~----------~~d~~~~g~I~~~eF~~ 92 (115)
+..-..++|. .++++++..++. .+-.+..|..+...|..
T Consensus 95 l~~e~eklGi-~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~ 143 (145)
T PF13623_consen 95 LEQEFEKLGI-TVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQ 143 (145)
T ss_pred HHHHHHHhCC-ccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHh
Confidence 4455666888 888888888772 12234566666655543
No 214
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=28.71 E-value=93 Score=23.53 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 53 LKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 53 l~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
+..-+...|. .++..++.+|+.+-..+.|.++...+.+++..+.
T Consensus 369 VT~eIL~~Gl--fSnr~Lervfe~HI~~Nk~~Lde~kMr~ll~~LK 412 (419)
T PF15244_consen 369 VTNEILKRGL--FSNRVLERVFERHIDQNKHRLDEEKMRHLLEQLK 412 (419)
T ss_pred HHHHHHHhcc--ccHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH
Confidence 3333444574 7889999999998888889999999888887653
No 215
>PLN02228 Phosphoinositide phospholipase C
Probab=27.85 E-value=2.6e+02 Score=22.22 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHHHhhCCc-CcHHHHHHHHhhhcCC----CCCcccHHHHHHHHHh
Q 044989 8 DDLADFEDYFPSMINRLGTE-GFISELCNGFQLLMDG----EKGLITFESLKRNSLL 59 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~g~i~~~el~~~l~~ 59 (115)
++.++.++|..++....... ...+.+..+|..|... ..|.++.+.|...|..
T Consensus 36 ~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 36 NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 46899999999987765433 2345577778877543 3578999999888854
No 216
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=27.76 E-value=60 Score=18.29 Aligned_cols=20 Identities=0% Similarity=0.046 Sum_probs=16.1
Q ss_pred ccccCCCcccHHHHHHHHHH
Q 044989 3 ALLFHDDLADFEDYFPSMIN 22 (115)
Q Consensus 3 ~~~~~~g~i~~~eFl~~~~~ 22 (115)
+-.+..|.|+++.|++.+.-
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l 30 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSL 30 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHH
Confidence 34678899999999998753
No 217
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.58 E-value=1.5e+02 Score=17.98 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
.+..+++.+. ++...+|.+|+...+ ..|...+..+++.
T Consensus 5 ~y~~L~~~~~-~~~~~vtl~elA~~l------~cS~Rn~r~lLkk 42 (115)
T PF12793_consen 5 QYQRLWQHYG-GQPVEVTLDELAELL------FCSRRNARTLLKK 42 (115)
T ss_pred HHHHHHHHcC-CCCcceeHHHHHHHh------CCCHHHHHHHHHH
Confidence 4556666665 777789999999988 4566677777664
No 218
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=26.99 E-value=2e+02 Score=19.18 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHhhCCcCcH-HHHHHHHh-hhcCCCCCcccHHHHHHHHHhcCC
Q 044989 10 LADFEDYFPSMINRLGTEGFI-SELCNGFQ-LLMDGEKGLITFESLKRNSLLLGL 62 (115)
Q Consensus 10 ~i~~~eFl~~~~~~~~~~~~~-~~~~~~F~-~~D~~~~g~i~~~el~~~l~~~g~ 62 (115)
.++.+.|....+......+.. +....+.+ ++-......||..|+...+...|+
T Consensus 36 av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 36 AVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGP 90 (181)
T ss_dssp EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSS
T ss_pred eeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCC
Confidence 566666666666554322222 22222222 222444566677777776666664
No 219
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=26.85 E-value=1.5e+02 Score=17.77 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 48 ITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 48 i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
+|.+++..+|...|. .++...+..+++.+. ..+.++.+.-..
T Consensus 17 ~ta~~I~~IL~aaGv-eVe~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGA-EIEPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCC-CcCHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 999999999999998 999999988888763 246677766543
No 220
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=26.73 E-value=1.9e+02 Score=19.03 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.7
Q ss_pred CcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhc
Q 044989 9 DLADFEDYFPSMINRLGTEGFISELCNGFQLLM 41 (115)
Q Consensus 9 g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D 41 (115)
..|+|+..+....+.+...+..+.+...+++|=
T Consensus 101 DIVDfdKLl~~t~~LL~FmdN~~~Id~~W~L~V 133 (170)
T PF08730_consen 101 DIVDFDKLLRNTYRLLIFMDNEEHIDESWKLFV 133 (170)
T ss_pred ceeeHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 468888888887777777777777777776663
No 221
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.56 E-value=1.3e+02 Score=17.10 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
++|.+|.++...+-.. +...+..+.++...- .-|.=.|..|+..+...
T Consensus 27 ~~~Vlt~~~~e~I~~~----~tr~~q~~~LLd~L~--~RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 27 SRGVFTPDMIEEIQAA----GSRRDQARQLLIDLE--TRGKQAFPAFLSALRET 74 (84)
T ss_pred hcCCCCHHHHHHHHcC----CCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc
Confidence 4678888776666532 345566777766554 44667889999999763
No 222
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.93 E-value=1.7e+02 Score=18.32 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCCHHHHHH----HHHhcCCCCCCcc
Q 044989 43 GEKGLITFESLKRNSLLLGLNDMMDDEIMC----MLNEGDLDGDGAL 85 (115)
Q Consensus 43 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~----~~~~~d~~~~g~I 85 (115)
+..|.||.+|-.++|..-. +++.++++. +|+.=|+...|..
T Consensus 51 ~~~~~iTlqEa~qILnV~~--~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNVKE--PLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccccHHHHhhHhCCCC--CCCHHHHHHHHHHHHhccCcccCcce
Confidence 3358899999888885432 566666654 6666566656654
No 223
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=1.6e+02 Score=17.86 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=36.1
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 044989 37 FQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCIL 93 (115)
Q Consensus 37 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 93 (115)
+-.+..-+. .||.+.++.++...|. .+.+.-+..++..+.. ++.+|.+.-
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGv-eve~~r~k~lvaaLeg-----~~idE~i~~ 56 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGV-EVEEARAKALVAALEG-----VDIDEVIKN 56 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCC-CccHHHHHHHHHHhcC-----CCHHHHHHH
Confidence 333433333 8999999999999998 8888888888887642 456665543
No 224
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=25.37 E-value=1.7e+02 Score=20.00 Aligned_cols=61 Identities=10% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 044989 7 HDDLADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 7 ~~g~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d 78 (115)
....+....|+...-+..+ ..|. +-.+.+|+...+++...++..+. .++.+.+..+.+.-+
T Consensus 29 ~~~~~~~SK~lS~vLRH~p---------~~~g-l~lD~~Gwa~i~~l~~~~~k~~~-~~~~~~l~~iV~~d~ 89 (211)
T COG1859 29 EKERVKLSKFLSGVLRHFP---------EAIG-LRLDEEGWADIDELLEGLRKAGR-WLTRELLLAVVATDD 89 (211)
T ss_pred cchhhhHHHHHHHHHhcCh---------HHcC-eeeccccchhHHHHHHHHHhhcc-CCCHHHHHHHHhcCC
Confidence 3444555666665544322 1121 23688999999999999999987 899999988887544
No 225
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=25.33 E-value=1.6e+02 Score=17.72 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 044989 64 DMMDDEIMCMLNEGDLDGDGALSQFEFCILM 94 (115)
Q Consensus 64 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 94 (115)
|-+.+++..++...+ ..++-++.-.++
T Consensus 78 P~~~dElrai~~~~~----~~~~~e~l~~IL 104 (112)
T PRK14981 78 PETRDELRAIFAKER----YTLSPEELDEIL 104 (112)
T ss_pred CCCHHHHHHHHHHhc----cCCCHHHHHHHH
Confidence 456677777776552 234444444443
No 226
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.23 E-value=1.4e+02 Score=18.38 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=8.0
Q ss_pred CcccHHHHHHHHHH
Q 044989 9 DLADFEDYFPSMIN 22 (115)
Q Consensus 9 g~i~~~eFl~~~~~ 22 (115)
..|+..+-..++..
T Consensus 11 ~yiti~Eak~il~~ 24 (114)
T COG1460 11 KYITISEAKKILSK 24 (114)
T ss_pred cCccHHHHHHHHHH
Confidence 45666666665554
No 227
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=25.15 E-value=1.3e+02 Score=17.70 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044989 47 LITFESLKRNSLLLGLNDMMDDEIMCMLN 75 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 75 (115)
.|+.+++..+.+.... .+++.+++.+..
T Consensus 2 ~i~~e~v~~la~LarL-~lseee~e~~~~ 29 (96)
T COG0721 2 AIDREEVKHLAKLARL-ELSEEELEKFAT 29 (96)
T ss_pred ccCHHHHHHHHHHhhc-ccCHHHHHHHHH
Confidence 4677777777776666 777777665544
No 228
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.12 E-value=39 Score=19.57 Aligned_cols=13 Identities=15% Similarity=-0.048 Sum_probs=6.2
Q ss_pred CCCcccHHHHHHH
Q 044989 7 HDDLADFEDYFPS 19 (115)
Q Consensus 7 ~~g~i~~~eFl~~ 19 (115)
.||.++-+|--.+
T Consensus 15 aDG~v~~~E~~~i 27 (111)
T cd07176 15 ADGDIDDAELQAI 27 (111)
T ss_pred hccCCCHHHHHHH
Confidence 3555555554333
No 229
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=24.87 E-value=1.2e+02 Score=19.43 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 044989 32 ELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQF 88 (115)
Q Consensus 32 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~ 88 (115)
-+..++.... ..|++...++...| +++...+..+++.+. ..|.|.|.
T Consensus 11 YL~~Iy~l~~--~~~~~~~~diA~~L------~Vsp~sVt~ml~rL~--~~GlV~~~ 57 (154)
T COG1321 11 YLETIYELLE--EKGFARTKDIAERL------KVSPPSVTEMLKRLE--RLGLVEYE 57 (154)
T ss_pred HHHHHHHHHh--ccCcccHHHHHHHh------CCCcHHHHHHHHHHH--HCCCeEEe
Confidence 3455565554 88999999988887 456666777777654 33444443
No 230
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.58 E-value=35 Score=18.59 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.4
Q ss_pred CCcccHHHHHHHHHhcCcC
Q 044989 82 DGALSQFEFCILMVRLSPG 100 (115)
Q Consensus 82 ~g~I~~~eF~~~l~~~~~~ 100 (115)
.|.|+++.|++-++.++.+
T Consensus 37 ~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp TTSS-HHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4678999998888776543
No 231
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=24.51 E-value=1.2e+02 Score=18.13 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=17.1
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 044989 58 LLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVR 96 (115)
Q Consensus 58 ~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 96 (115)
+..|. .+++.+++..+...-. ...++.++|...+..
T Consensus 61 k~~gI-~vsd~evd~~i~~ia~--~n~ls~~ql~~~L~~ 96 (118)
T PF09312_consen 61 KRLGI-KVSDEEVDEAIANIAK--QNNLSVEQLRQQLEQ 96 (118)
T ss_dssp HHCT-----HHHHHHHHHHHHH--HTT--HHHHHHHCHH
T ss_pred HHcCC-CCCHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 44677 7888888776665432 122455666665543
No 232
>PRK05849 hypothetical protein; Provisional
Probab=23.89 E-value=1.3e+02 Score=24.81 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=15.9
Q ss_pred CcccHHHHHHHHHhcCcCccC
Q 044989 83 GALSQFEFCILMVRLSPGLME 103 (115)
Q Consensus 83 g~I~~~eF~~~l~~~~~~~~e 103 (115)
|.+++++|+.-.-...++..+
T Consensus 502 g~l~~~~FL~~YGHR~~ge~D 522 (783)
T PRK05849 502 GELSKDEFLKRYGHLRPGTYD 522 (783)
T ss_pred hccCHHHHHHHhCCCCCCcee
Confidence 668999999988666666554
No 233
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=23.61 E-value=1.8e+02 Score=17.57 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 044989 47 LITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCI 92 (115)
Q Consensus 47 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 92 (115)
.||.+++..++...|. .+.+..+..+++.+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGv-eVee~~~k~~v~aL~G-----kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGV-EVDEARVKALVAALED-----VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCC-CccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 7999999999999998 8888888888877632 45566554
No 234
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.50 E-value=1.7e+02 Score=17.14 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 45 KGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 45 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
++.+|.+++.+.++.-+. +++...+...++.
T Consensus 14 ~~~~sa~ei~~~l~~~~~-~i~~~TVYR~L~~ 44 (116)
T cd07153 14 DGHLTAEEIYERLRKKGP-SISLATVYRTLEL 44 (116)
T ss_pred CCCCCHHHHHHHHHhcCC-CCCHHHHHHHHHH
Confidence 678899999888887775 6777777665543
No 235
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=23.49 E-value=1.7e+02 Score=17.24 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=5.1
Q ss_pred HHHHHHHHhcCC
Q 044989 51 ESLKRNSLLLGL 62 (115)
Q Consensus 51 ~el~~~l~~~g~ 62 (115)
..|..+|+.++.
T Consensus 70 ~~Li~aLr~~~l 81 (97)
T cd08316 70 RTLIKTLRKAKL 81 (97)
T ss_pred HHHHHHHHHccc
Confidence 444444444443
No 236
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.33 E-value=44 Score=17.23 Aligned_cols=38 Identities=3% Similarity=-0.002 Sum_probs=20.6
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044989 36 GFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLN 75 (115)
Q Consensus 36 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 75 (115)
+|..+...+++.+|.+|+...+.. .. +.....++.+++
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~-~~-p~~~~~L~RimR 48 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT-SN-PSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC-T--TTHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC-CC-cchHHHHHHHHH
Confidence 455555555788998888765542 11 222344555554
No 237
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=23.13 E-value=2.2e+02 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=8.2
Q ss_pred CCcccHHHHHHHHHH
Q 044989 8 DDLADFEDYFPSMIN 22 (115)
Q Consensus 8 ~g~i~~~eFl~~~~~ 22 (115)
++.|++..|..++..
T Consensus 97 n~~i~~~~ff~~lQ~ 111 (175)
T PF04876_consen 97 NGLIDIGKFFDILQP 111 (175)
T ss_pred ccceeHHHHHHHHHH
Confidence 344666666665543
No 238
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.02 E-value=2e+02 Score=17.94 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=13.1
Q ss_pred CCcccHHHHHHHHHh--cCCCCCCHHHHHHHHH
Q 044989 45 KGLITFESLKRNSLL--LGLNDMMDDEIMCMLN 75 (115)
Q Consensus 45 ~g~i~~~el~~~l~~--~g~~~~~~~~~~~~~~ 75 (115)
.+.++.+++.++=-. +|...++.+|++++.+
T Consensus 62 ~~~lgl~~l~~f~W~lalGd~~Ls~eEf~~L~~ 94 (141)
T PF12419_consen 62 QSFLGLDQLLDFDWELALGDEELSEEEFEQLVE 94 (141)
T ss_pred CCccChHHHhcceEEEEECCEECCHHHHHHHHH
Confidence 344444444433222 2322455555555444
No 239
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.98 E-value=2.1e+02 Score=19.81 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=33.2
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 37 FQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 37 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
+.+.=-++.|.+....|..-+.++.. +++..|+..+-+.+
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~-~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPR-NLTKAEVDAVNKRL 196 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCc-cCCHHHHHHHHHHH
Confidence 44455688999999999999999987 89999998886654
No 240
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=22.56 E-value=1.9e+02 Score=19.95 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=26.3
Q ss_pred cHHHHHHHH----HhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 044989 49 TFESLKRNS----LLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMV 95 (115)
Q Consensus 49 ~~~el~~~l----~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 95 (115)
+.++++.+. ...+. .+++.+++.+...+..=.+-.+++.+|..-+.
T Consensus 173 t~~eI~~IV~~~~~~~~i-~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNI-NLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555555443 33466 67777777766555444444566666665554
No 241
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.17 E-value=2e+02 Score=17.66 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcCcc
Q 044989 45 KGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPGLM 102 (115)
Q Consensus 45 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~ 102 (115)
...+|.++|..++..+|...+- ..-...++..+.+. ..++-++.+.+|.. .|.++
T Consensus 35 ~~p~t~~eL~~~l~~~g~~~li-n~~~~~~r~l~~~~-~~ls~~e~i~lm~~-~P~LI 89 (126)
T TIGR01616 35 KEPWHADTLRPYFGNKPVGSWF-NRAAPRVKSGEVNP-DSIDEASALALMVS-DPLLI 89 (126)
T ss_pred CCCcCHHHHHHHHHHcCHHHHH-hccchHhhhCCCCc-ccCCHHHHHHHHHh-CcCeE
Confidence 4557888888888776520000 00011334333222 45777888887764 34333
No 242
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.05 E-value=99 Score=20.50 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHHHhcCc
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG----DLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
.+.++.+|.-||...--..+-+++.+++...+. -.....++.++... +.... +|.+|+..+....|
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~I-IRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~fv~~~P 121 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGI-IRNRGKIEATIANARAALQLEQN---DLVEFLWSFVNHQP 121 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccc-hhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhccCCCC
Confidence 456899999999999999999999999987775 44455555554421 11111 78888876644444
No 243
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=21.95 E-value=76 Score=23.04 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.7
Q ss_pred CcccHHHHHHHHHhcCcCccC---------CChHHHHhhh
Q 044989 83 GALSQFEFCILMVRLSPGLME---------GSPEWMIEDL 113 (115)
Q Consensus 83 g~I~~~eF~~~l~~~~~~~~e---------~~~~~~~~~~ 113 (115)
|.|++++|..++.+..|-..+ +-..|++|++
T Consensus 269 ~~~~w~~~~~~~~~~gp~~~~~~~~~~~~~~~~~wvr~~~ 308 (314)
T PRK13778 269 GEIDWDEFKEVIKGNGPCNRERLAARRKAHEDGAWVREAA 308 (314)
T ss_pred CCCCHHHHHHHHccCCCCCHHHHHHHHHHHHcchHHHHHH
Confidence 569999999999876554433 2355777664
No 244
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=21.64 E-value=1.3e+02 Score=15.10 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 31 SELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 31 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
..+...|. .+.+++..+...+...+| ++...|...|..
T Consensus 13 ~~L~~~f~-----~~~~p~~~~~~~la~~l~---l~~~~V~~WF~n 50 (57)
T PF00046_consen 13 KVLEEYFQ-----ENPYPSKEEREELAKELG---LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHH-----HSSSCHHHHHHHHHHHHT---SSHHHHHHHHHH
T ss_pred HHHHHHHH-----Hhcccccccccccccccc---ccccccccCHHH
Confidence 34555565 277888888888888777 477888887763
No 245
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.36 E-value=2.2e+02 Score=17.84 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=25.6
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
.++.+|.+++...++.-++ +++...+...++.+
T Consensus 33 ~~~~~sAeei~~~l~~~~p-~islaTVYr~L~~l 65 (145)
T COG0735 33 ADGHLSAEELYEELREEGP-GISLATVYRTLKLL 65 (145)
T ss_pred cCCCCCHHHHHHHHHHhCC-CCCHhHHHHHHHHH
Confidence 3344999999999999887 88888877766643
No 246
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=21.23 E-value=82 Score=16.94 Aligned_cols=42 Identities=2% Similarity=-0.072 Sum_probs=22.5
Q ss_pred HhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 044989 37 FQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGD 78 (115)
Q Consensus 37 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d 78 (115)
|..+..+..|.+|..+...+-.-+.....+.+-+..+++.+-
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~ 43 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYAL 43 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455556666777777766655544421345555666666554
No 247
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.17 E-value=1.3e+02 Score=15.02 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred CCCCccc-HHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 044989 43 GEKGLIT-FESLKRNSLLLGLNDMMDDEIMCMLNE 76 (115)
Q Consensus 43 ~~~g~i~-~~el~~~l~~~g~~~~~~~~~~~~~~~ 76 (115)
...|.|+ ...+.+.+...|. .+++..++.+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~-~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGF-RISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCc-ccCHHHHHHHHHH
Confidence 3456665 3344444555676 7787777777764
No 248
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.03 E-value=80 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=18.5
Q ss_pred hhhcCCCCCcccHHHHHHHHHh
Q 044989 38 QLLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 38 ~~~D~~~~g~i~~~el~~~l~~ 59 (115)
.-+|.+++|.++.+++..+...
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHH
Confidence 3678999999999998887754
No 249
>cd08310 Death_NFkB-like Death domain of Nuclear Factor-KappaB precursor proteins. Death Domain (DD) of Nuclear Factor-KappaB (NF-kB) precursor proteins. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). Two of these, NF-kB1 and NF-kB2 are produced from the processing of the precursor proteins p105 and p100, respectively. In addition to RHD, p105 and p100 contain ANK repeats and a C-terminal DD. NF-kBs are regulated by the Inhibitor of NF-kB (IkB) Kinase (IKK) complex through classical and non-canonical pathways, which differ in the IKK subunits involved and downstream targets. IKKs facilitate the release of NF-kB dimers from an inactive state, allowing them to migrate to the nucleus where they regulate gene transcription. The precursor proteins p105 and p100 function
Probab=20.93 E-value=1.7e+02 Score=16.15 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHhhCCcCcHHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCC
Q 044989 10 LADFEDYFPSMINRLGTEGFISELCNGFQLLMDGEKGLITFESLKRNSLLLGL 62 (115)
Q Consensus 10 ~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~ 62 (115)
.++|..++.++.. .++|...+...|..- + -|...+..+++.+|.
T Consensus 21 ~L~~~~~i~~~~~---~~sPt~~LL~~we~~---~---~tv~~L~~~L~~mgr 64 (72)
T cd08310 21 LLDLGHLVNFIRL---SPSPTKMLLDYFEMQ---G---GTLERLRDALEVLGE 64 (72)
T ss_pred HcCcHHHHHHHhc---CCCHHHHHHHHHHhC---C---CCHHHHHHHHHHcCc
Confidence 3556655555543 467777777777643 2 478899999998874
No 250
>PHA02975 hypothetical protein; Provisional
Probab=20.55 E-value=1.1e+02 Score=16.87 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHhhCCc
Q 044989 10 LADFEDYFPSMINRLGTE 27 (115)
Q Consensus 10 ~i~~~eFl~~~~~~~~~~ 27 (115)
-=+|++|++.....+++.
T Consensus 17 DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 17 DSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 357899999887776653
No 251
>PLN02230 phosphoinositide phospholipase C 4
Probab=20.52 E-value=2.7e+02 Score=22.26 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcC
Q 044989 66 MDDEIMCMLNEGDLDGDGALSQFEFCILMVRLS 98 (115)
Q Consensus 66 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 98 (115)
+..++..+|..+..++ +.++.++|...+....
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 5578888999886444 7899999999887654
No 252
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.49 E-value=77 Score=21.17 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHHHhcCc
Q 044989 30 ISELCNGFQLLMDGEKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG----DLDGDGALSQFEFCILMVRLSP 99 (115)
Q Consensus 30 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~~l~~~~~ 99 (115)
.+.++.+|.-||.+.--..+-+++..++...+. -.....++.++... +.... .-||.+|+.......|
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~I-IRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~fv~~~p 124 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGI-IRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSFVNHQP 124 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchh-HHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhccCCCc
Confidence 456999999999999999999999999987665 34455555544421 11111 2478888876644433
No 253
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=20.32 E-value=1.6e+02 Score=15.69 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=15.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEG 77 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 77 (115)
.+..+|..++...+...|. .++...+...+...
T Consensus 10 ~~p~~s~~~i~~~l~~~~~-~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 10 RNPRISAREIAQELQEAGI-SVSKSTIRRRLREA 42 (72)
T ss_dssp ------HHHHHHHT---T---S-HHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHccC-CcCHHHHHHHHHHc
Confidence 4455777777777766676 77777777777654
No 254
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.23 E-value=2e+02 Score=16.79 Aligned_cols=53 Identities=15% Similarity=-0.032 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhcCcC
Q 044989 44 EKGLITFESLKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRLSPG 100 (115)
Q Consensus 44 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 100 (115)
+.|.+|.++...+-...+. .-..+.+.+++...- . |.=-|..|+..+..+..+
T Consensus 30 ~~~ilT~~d~e~I~aa~~~-~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 30 EQGLLTEEDRNRIEAATEN-HGNESGARELLKRIV-Q--KEGWFSKFLQALRETEHH 82 (88)
T ss_pred hcCCCCHHHHHHHHHhccc-cCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHcCch
Confidence 3568888887777765543 456777888887776 3 444578899999876553
No 255
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17 E-value=2.7e+02 Score=18.37 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=12.3
Q ss_pred hhcCCCCCcccHHHHHHHHHh
Q 044989 39 LLMDGEKGLITFESLKRNSLL 59 (115)
Q Consensus 39 ~~D~~~~g~i~~~el~~~l~~ 59 (115)
+|+...+-+||.+++.+++..
T Consensus 20 LYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hcccCCceeeeHHHHHHHHhc
Confidence 445555666666666665544
No 256
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.15 E-value=1.8e+02 Score=16.23 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCCcccHHHHHHHH
Q 044989 50 FESLKRNSLLLGLNDMMDDEIMCMLNEGDLD-GDGALSQFEFCILM 94 (115)
Q Consensus 50 ~~el~~~l~~~g~~~~~~~~~~~~~~~~d~~-~~g~I~~~eF~~~l 94 (115)
..++...| .|. +.+.+.+...+...+.. --+.++-+||+.++
T Consensus 44 i~~le~~L--~G~-~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGC-PYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTC-BSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--Hhc-CCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45566555 466 77888888888877543 34578888887754
No 257
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.14 E-value=5.2e+02 Score=22.21 Aligned_cols=41 Identities=12% Similarity=-0.034 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhc
Q 044989 53 LKRNSLLLGLNDMMDDEIMCMLNEGDLDGDGALSQFEFCILMVRL 97 (115)
Q Consensus 53 l~~~l~~~g~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 97 (115)
+..++..+- ...+++.+|..+..++.-.++.++|+..+...
T Consensus 210 f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 210 FYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKK 250 (1189)
T ss_pred HHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhh
Confidence 444554433 23579999999988887889999999999653
Done!