Query 044992
Match_columns 597
No_of_seqs 228 out of 1072
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 8E-138 2E-142 1152.9 56.1 542 35-596 32-588 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 2E-133 5E-138 1114.0 52.4 507 76-596 20-541 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 3E-116 7E-121 924.4 34.6 451 110-593 21-490 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 1E-109 3E-114 918.8 36.6 456 112-591 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 3E-104 6E-109 891.7 44.2 455 111-591 60-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 3.1E-82 6.7E-87 697.2 30.0 497 77-596 72-580 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 2.1E-31 4.4E-36 294.7 29.2 348 127-487 37-415 (582)
8 PF06433 Me-amine-dh_H: Methyl 91.6 16 0.00035 39.3 18.5 253 257-579 19-290 (342)
9 COG2706 3-carboxymuconate cycl 73.5 1.4E+02 0.003 32.3 27.4 279 245-575 51-344 (346)
10 PF02239 Cytochrom_D1: Cytochr 66.0 41 0.00089 36.5 10.2 75 476-577 45-119 (369)
11 PF10282 Lactonase: Lactonase, 48.1 3.6E+02 0.0079 28.6 26.4 105 244-354 47-163 (345)
12 TIGR02276 beta_rpt_yvtn 40-res 33.7 1.2E+02 0.0026 21.2 5.0 27 555-584 13-39 (42)
13 PF13360 PQQ_2: PQQ-like domai 28.3 2.8E+02 0.0062 26.8 8.4 65 494-579 3-67 (238)
14 PRK11028 6-phosphogluconolacto 22.7 8.6E+02 0.019 25.1 11.2 95 245-352 46-143 (330)
15 COG3823 Glutamine cyclotransfe 20.9 72 0.0016 32.4 2.4 36 241-279 96-132 (262)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=7.8e-138 Score=1152.90 Aligned_cols=542 Identities=37% Similarity=0.706 Sum_probs=479.3
Q ss_pred CCCCCcceeeeeeccCCCCCCC--Cccccccccccc--CCCCCCCcccccchHHHHHhHHHHhh------ccccccCCCC
Q 044992 35 SSSSSRTNNVIVSTTSPPKKPE--TTEENNKQQTKT--TQKPSSSVSTTTNVSAVILNTLNKLI------KPKLQAQPLS 104 (597)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 104 (597)
....+++.++++.+++|+.-+- .........+++ .+.....|++.|++|+++||++|+.+ .+|| +++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 108 (590)
T PLN02258 32 PRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPL---PKT 108 (590)
T ss_pred cccCCCCcccccccCCCCCCCCCccCCCCCccccccccccCCccccCcchhhHHHHHHHHHHHHhhhccccCCC---CCC
Confidence 3344555677777777762111 111111111111 11122357899999999999999942 3678 999
Q ss_pred CCccccccCCCcCccccCCCccceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEeec
Q 044992 105 LDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVK 184 (597)
Q Consensus 105 ~~p~~~l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G~a~y~~RfV~ 184 (597)
.||+++|+|||+||.|+++..++.|+|+||+||+|+||||||||+|.+.+ ++||||||||||+|+|++|+|+|+|||||
T Consensus 109 ~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~-~~H~FDGDGMvhav~f~dG~a~y~~RfVr 187 (590)
T PLN02258 109 ADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVA-GHHLFDGDGMVHAVRIGNGSASYACRFTE 187 (590)
T ss_pred CCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCC-CCccccCCceEEEEEECCCeEEEEeeeec
Confidence 99999999999999888777788999999999999999999999998766 89999999999999999999999999999
Q ss_pred cchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCC
Q 044992 185 TYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTS 264 (597)
Q Consensus 185 T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~ 264 (597)
|++|++|+++||++|++.++++++. .++.|..+++.|.+.+.++..+++|+|||||++|+||||||||+|+||+|++++
T Consensus 188 T~~~~~E~~agr~l~~~~~g~~~~~-~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~ 266 (590)
T PLN02258 188 TNRLVQERALGRPVFPKAIGELHGH-SGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITG 266 (590)
T ss_pred chhHHHHHhcCCccccccccccccc-ccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCC
Confidence 9999999999999999888888766 777888888888877888777788999999999999999999999999999988
Q ss_pred CCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccC-CCeEEEEEEcCCCCccceEEEeeCCccCCCCCcceeee
Q 044992 265 NGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPM-PPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFA 343 (597)
Q Consensus 265 ~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~-~p~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfa 343 (597)
++||||+|++||+|+|..+||||||+||.|||||+|+|+.. +|+++||++|++|++.+.++|++ +.|+||||||
T Consensus 267 ~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~l-----p~p~~~HDFa 341 (590)
T PLN02258 267 DGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPL-----DQPTMMHDFA 341 (590)
T ss_pred CCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeC-----CCCcccccee
Confidence 88999999999999998899999999999999999999974 59999999999999999999998 7899999999
Q ss_pred cCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCCcEEEEEe
Q 044992 344 ITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVA 423 (597)
Q Consensus 344 iTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~ 423 (597)
|||||+||+++|+++++.+|+ .|++++.||+++++|||||||++++.++++||++|+||+||++|||||+++++||+++
T Consensus 342 iTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~ 420 (590)
T PLN02258 342 ITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIG 420 (590)
T ss_pred ccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEE
Confidence 999999999999999999998 7789999999999999999999877778999999999999999999987666899999
Q ss_pred ecCCChHHHHHHh-hhccceEEEEEEeCCCCcEEEEEccC---CCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEE
Q 044992 424 PNILSVEQVFERM-ELIHCLMEKVRIDLRTGVVSRHPISA---RNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKL 499 (597)
Q Consensus 424 ~~~~~~~~~~~~~-~~~~~~l~r~ridl~tG~v~~~~L~~---~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~ 499 (597)
|++.+.+.+++.. +.++++|+||||||+||+++++.|.+ .++|||+||++|.||+|||+|+++.++++++++|+|+
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~ 500 (590)
T PLN02258 421 SCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKV 500 (590)
T ss_pred ecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEE
Confidence 9988776665543 45678999999999999999888865 7999999999999999999999988888899999999
Q ss_pred ecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCc
Q 044992 500 DLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQR 579 (597)
Q Consensus 500 Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~r 579 (597)
|+++|+ +..|++|++||+|||+||||++++ .+|||||||++|||+++++|+|+||||++ +++||+|+||+|
T Consensus 501 Dl~tg~-----~~~~~~g~g~~~gEPvFVPr~~~~--~~EDDGylls~V~d~~~~~SeL~IlDA~~--l~~VArv~LP~r 571 (590)
T PLN02258 501 DLSTGE-----VKKYIYGEGRYGGEPFFVPRGSGS--EAEDDGYILAFVHDEEKGKSELQVVNAVN--LELEATVKLPSR 571 (590)
T ss_pred ECCCCc-----EEEEECCCCccccCCEeccCCCCC--cccCCcEEEEEEEECCCCceEEEEEeCCC--CcccEEEECCCC
Confidence 999998 688999999999999999999742 35999999999999999999999999999 557999999999
Q ss_pred CCCCcccccccCccccc
Q 044992 580 VPAGFHGLFVREIDFCK 596 (597)
Q Consensus 580 VP~GFHG~fv~~~~l~~ 596 (597)
|||||||+|++.+||++
T Consensus 572 VP~GFHG~wv~~~~l~~ 588 (590)
T PLN02258 572 VPYGFHGTFISAEDLLK 588 (590)
T ss_pred CCCcccccccCHHHHhh
Confidence 99999999999999964
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=2.1e-133 Score=1114.02 Aligned_cols=507 Identities=37% Similarity=0.650 Sum_probs=455.5
Q ss_pred cccccchHHHHHhHHHHhhccccccCCCCCCccccccCCCcCc-cccCCCccceeeccCCCCCcceEEeecCCCCCCCCC
Q 044992 76 VSTTTNVSAVILNTLNKLIKPKLQAQPLSLDPSRAFSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRS 154 (597)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~gnfaPv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~ 154 (597)
.++.|+++++++|++|+.+...| ++++||+++|+|||+|| +|.++..++.|+|+||+||+|+|||||||+++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~~~ 96 (545)
T PLN02491 20 PRPSKGLTSKAVDLLEKLIVKLM---HDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSPVA 96 (545)
T ss_pred CchhhhhhHHHHHHHHHHHHhhc---cCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCCCC
Confidence 46789999999999999766567 99999999999999999 888767778899999999999999999999988865
Q ss_pred CCCCCCCCCCcEEEEEEeCCeEEEEEEeeccchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCC
Q 044992 155 EPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGF 234 (597)
Q Consensus 155 ~~~H~FDGdGMlha~~f~~G~a~y~~RfV~T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~ 234 (597)
.+||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++ +++++|+ +|.++......|...+..+...++
T Consensus 97 -~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~-~g~~~~~~~~~r~~~~~~~~~~~~ 173 (545)
T PLN02491 97 -GYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGL-FGLLMVNMQQLRAKLKVLDFSYGN 173 (545)
T ss_pred -CCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccc-ccccccc-chhhhhhhhhhhccccccccccCC
Confidence 8999999999999999999999999999999999999999999997 7888887 676666666666555544444457
Q ss_pred CcceeEEEEeCCEEEEEEeCCccEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccCCCeEEEEEE
Q 044992 235 GLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWF 314 (597)
Q Consensus 235 ~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~~p~~~~~~~ 314 (597)
++|||||++|+||||||||+|+||++++.+++||||+|++||+|+|..+||||||+||+|||||+|+|+..+|+++|+++
T Consensus 174 ~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~ 253 (545)
T PLN02491 174 GTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVI 253 (545)
T ss_pred CCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEE
Confidence 89999999999999999999999999973346999999999999999999999999999999999999997799999999
Q ss_pred cCCCCccceEEEeeCCccCCCCCcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCce
Q 044992 315 DANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQM 394 (597)
Q Consensus 315 d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~v 394 (597)
|++|++.+.++|++ +.|+|||||||||||+||+++|+++++.+|+.+++.++.|||++++|||||||++++.+.+
T Consensus 254 ~~~G~~~~~v~i~l-----~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~i 328 (545)
T PLN02491 254 SKDGAMHDPVPITI-----SEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMI 328 (545)
T ss_pred CCCCcCcceeEeec-----CCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCce
Confidence 99999999999999 7899999999999999999999999999999666778899999999999999998777789
Q ss_pred EEEecCCcceeeecceeecCCCcEEEEEeecCCChH-----HHHHH-hhhccceEEEEEEeCCCCcEEEEEccCCCCccc
Q 044992 395 RWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVE-----QVFER-MELIHCLMEKVRIDLRTGVVSRHPISARNLDMA 468 (597)
Q Consensus 395 ~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~-----~~~~~-~~~~~~~l~r~ridl~tG~v~~~~L~~~~~EfP 468 (597)
+||++|+||+||++|||||++ +||+++|++.+.+ ..+.. .+...++|+|||||+++|+++++.|++.++|||
T Consensus 329 rw~e~~~~f~fH~~NA~Ee~~--~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP 406 (545)
T PLN02491 329 RWFELPNCFIFHNANAWEEED--EVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFP 406 (545)
T ss_pred EEEEcCCceEeecCCccccCC--eEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccC
Confidence 999999999999999999864 8999999876543 11211 234568999999999999999999999999999
Q ss_pred eeCCCCCCCCCceEEEecCCCCCCCCceEEEecCC----Ccc----cceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCC
Q 044992 469 VINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTK----GER----QECTVATRIYGPDCYGGEPFFAARDAADKEADED 540 (597)
Q Consensus 469 ~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~t----g~~----~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~ED 540 (597)
+||++|+||||||+|+++.++++++++|+|+|+++ |+. ++|.+..|++|++||+|||+||||++++ +.+||
T Consensus 407 ~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~-~~~ED 485 (545)
T PLN02491 407 RVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGT-TSEED 485 (545)
T ss_pred ccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCC-CcccC
Confidence 99999999999999999888888899999999996 432 3456778999999999999999997531 15899
Q ss_pred CcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCcCCCCcccccccCccccc
Q 044992 541 DGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCK 596 (597)
Q Consensus 541 DGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~~~~l~~ 596 (597)
|||||++|||+++++|+|+||||++|+++|||+|+||+||||||||+|++++||++
T Consensus 486 DG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~ 541 (545)
T PLN02491 486 DGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQE 541 (545)
T ss_pred CcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999854
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.4e-116 Score=924.40 Aligned_cols=451 Identities=36% Similarity=0.604 Sum_probs=396.9
Q ss_pred cccCCCcCc-cccCCCccceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCC-eEEEEEEeeccch
Q 044992 110 AFSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQG-QATFCSRYVKTYK 187 (597)
Q Consensus 110 ~l~gnfaPv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G-~a~y~~RfV~T~~ 187 (597)
+++|+|+|+ .|...+.+..|+|+||++|+|+|||||||++..+....+||||||||||+|.|.|| +|+|+||||||.+
T Consensus 21 ~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g 100 (490)
T COG3670 21 YWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQG 100 (490)
T ss_pred hhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeece
Confidence 479999999 88988888889999999999999999999999885558999999999999999995 9999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCC
Q 044992 188 YTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGD 267 (597)
Q Consensus 188 ~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~t 267 (597)
|.+|.+||+++++++++...+. .+.. .| ...-+|.|||||++|+++|+||||+|.||+||++ |
T Consensus 101 ~~ae~~Ag~~l~~g~~~~~p~~----~~~~---~~-------~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~---t 163 (490)
T COG3670 101 YLAENEAGKPLWGGLGETQPPG----VRPH---SR-------TGDLKNAANTSVIMHGDELLALWEGGSPYRLDPD---T 163 (490)
T ss_pred eehhhhcCcceeccccccCCCC----cCcC---cc-------ccccccCCccceEeehhHHHHHHhcCCccccChh---H
Confidence 9999999999998765543221 1110 00 0123689999999999999999999999999975 9
Q ss_pred ccceeeccCCC-ccccCccCCCcccCCCCcEEEEEeccCCCeEEEEEEcCCCCccceEEEeeCCccCCCCCcceeeecCC
Q 044992 268 IETLGRCDLDG-KLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITK 346 (597)
Q Consensus 268 LeTlG~~d~~g-~l~~~ftAHPk~DP~tGel~~f~~~~~~p~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTe 346 (597)
|+|+|..+|+| .+..+|+||||+||.||||++|+|+...|+++||++|++|++++.+.|++ +.+.|||||+||+
T Consensus 164 L~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~l-----pg~~~~HDFa~T~ 238 (490)
T COG3670 164 LETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPL-----PGPPMMHDFAITE 238 (490)
T ss_pred hhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeec-----CCCccceeeeecC
Confidence 99999999999 56678999999999999999999999888999999999999999999999 7899999999999
Q ss_pred cEEEEEecceeccH-HHHHhc--CCCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCCcEEEEEe
Q 044992 347 RYAIFVDTQVQAYG-MEMILR--REPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVA 423 (597)
Q Consensus 347 nyvVf~d~p~~~~~-~~m~~~--g~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~ 423 (597)
||+||+++|+.+|+ .+++.+ .+.++.|+|+.++||+||||.+ + ++|||||+|+||+||+.||||++|+ .|.++.
T Consensus 239 ~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~-~v~~d~ 315 (490)
T COG3670 239 NYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDE-VVLVDF 315 (490)
T ss_pred ceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCC-cEEEEE
Confidence 99999999999995 444422 4678999999999999999986 3 7899999999999999999999874 455666
Q ss_pred ecCCChHHHHHH----h-----hhccceEEEEEEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCCC-CCCC
Q 044992 424 PNILSVEQVFER----M-----ELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDP-MPKM 493 (597)
Q Consensus 424 ~~~~~~~~~~~~----~-----~~~~~~l~r~ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~-~~~~ 493 (597)
++..+.....+. . ..-.++|+||+|||+||++..+.+.++++|||+||++|.|++|||+|++...+ ++.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~ 395 (490)
T COG3670 316 LRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLF 395 (490)
T ss_pred EeecccccccccccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccch
Confidence 665443221111 1 11258999999999999999999999999999999999999999999987654 4455
Q ss_pred Cc---eEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCe
Q 044992 494 TG---LVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDI 570 (597)
Q Consensus 494 ~g---lvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~p 570 (597)
++ |+|+|++||+ .+.+.||+++|++||+||||++ + .+|||||||++|+|.+.++|+|+|+||++++.+|
T Consensus 396 ~g~~~l~k~D~~tg~-----~~~~~~g~~~y~~E~vfvPrpg-~--~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~ep 467 (490)
T COG3670 396 QGLQTLAKHDLETGT-----SQVYSFGPRGYGSEPVFVPRPG-S--SAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEP 467 (490)
T ss_pred hhcceeEEEeccCCc-----EEEEecCCCCcccccccccCCC-C--CcCCCcEEEEEEEecCCCcceEEEEecccCCCCc
Confidence 66 9999999999 6889999999999999999998 4 7999999999999999999999999999999999
Q ss_pred EEEEEcCCcCCCCcccccccCcc
Q 044992 571 VAEVKLPQRVPAGFHGLFVREID 593 (597)
Q Consensus 571 VA~v~LP~rVP~GFHG~fv~~~~ 593 (597)
|||+.||++|||||||+|++.++
T Consensus 468 Ia~l~Lp~~vP~gfHG~w~~~~~ 490 (490)
T COG3670 468 IARLALPQRVPYGFHGNWVPTEE 490 (490)
T ss_pred ceEEecccccccccccccccccC
Confidence 99999999999999999998753
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.2e-109 Score=918.85 Aligned_cols=456 Identities=38% Similarity=0.619 Sum_probs=342.0
Q ss_pred cCCCcCc-cccCCCccceeeccCCCCCcceEEeecCCCCC-CCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEeeccchhh
Q 044992 112 SNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQY-PPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYT 189 (597)
Q Consensus 112 ~gnfaPv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~-~p~~~~~H~FDGdGMlha~~f~~G~a~y~~RfV~T~~~~ 189 (597)
+|+|+|+ +|......+.|+|+||+||+|+|||||||+++ .+..+.+||||||||||+|+|++|+|+|+||||+|++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 5899999 67745656778999999999999999999988 555568999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCcc
Q 044992 190 IENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIE 269 (597)
Q Consensus 190 ~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLe 269 (597)
+|+++|+.+|++.++... ...++...+ + +.........+|+|||||++|+||||||||+|.||+||+. |||
T Consensus 81 ~e~~~g~~~~~g~~gt~~----~~~~~~~~~-~-~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~---TLe 151 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVP----LPDPCRNIF-R-FPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPD---TLE 151 (486)
T ss_dssp HHHHHTSS-SC-TTTCTT----CSTHHHHTC-H-HTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETT---TCE
T ss_pred HHHhcCCceecccccccc----cCchhhhhh-h-hccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechh---Hhh
Confidence 999999999876554432 112222211 1 0111112235689999999999999999999999999974 999
Q ss_pred ceeeccCCCccc-cCccCCCcccCCCCcEEEEEeccC---CCeEEEEEEcCCCCccceEEE-eeCCccCCCCCcceeeec
Q 044992 270 TLGRCDLDGKLV-MNMTAHPKKDPETGEMFAFRYSPM---PPFVTYFWFDANGEKQPDVHI-KMPGQWLRHPPLMHDFAI 344 (597)
Q Consensus 270 TlG~~d~~g~l~-~~ftAHPk~DP~tGel~~f~~~~~---~p~~~~~~~d~~G~~~~~~~i-~l~~~~~~~p~~iHDfai 344 (597)
|+|.+||+|+|. ..||||||+||+|||+|+|+++.. .|.+++|++|++|++.+.+.+ ++ +.++|||||+|
T Consensus 152 T~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~iHdf~v 226 (486)
T PF03055_consen 152 TLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPL-----PRPSYIHDFAV 226 (486)
T ss_dssp EEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCC-----CS-B-----EE
T ss_pred hcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccC-----CCCcccccccc
Confidence 999999999998 679999999999999999999864 489999999999987666665 77 78999999999
Q ss_pred CCcEEEEEecceeccHHHHHhcCC---CceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCC-cEEE
Q 044992 345 TKRYAIFVDTQVQAYGMEMILRRE---PLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDG-NVIV 420 (597)
Q Consensus 345 TenyvVf~d~p~~~~~~~m~~~g~---~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg-~~Iv 420 (597)
||||+||+++|+.+++.+++ .|. .++.|+|++++||+||||++++ ..++||++|+||+||++||||++|| .+||
T Consensus 227 T~~Y~V~~~~P~~~~~~~~~-~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv 304 (486)
T PF03055_consen 227 TENYVVFPDNPLRFDPERLL-LGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIV 304 (486)
T ss_dssp -SSEEEEEE-SEEE-HHHHH-TTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEE
T ss_pred cCceEEEEECCeEECHHHHh-hCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEE
Confidence 99999999999999999999 555 7899999999999999998754 6799999999999999999999763 5899
Q ss_pred EEeecCCChHHH----HHHh--------hhccceEEEEEEeCC--CCcEEEEEccCC-CCccceeCCCCCCCCCceEEEe
Q 044992 421 MVAPNILSVEQV----FERM--------ELIHCLMEKVRIDLR--TGVVSRHPISAR-NLDMAVINPGYVAKKNRYVYAA 485 (597)
Q Consensus 421 l~~~~~~~~~~~----~~~~--------~~~~~~l~r~ridl~--tG~v~~~~L~~~-~~EfP~In~~~~Gr~~RY~Y~~ 485 (597)
++.|++.+.+.+ ++.+ ....++|+||+||++ +|+++++.|.+. ++|||+||++|.||+|||+|++
T Consensus 305 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~ 384 (486)
T PF03055_consen 305 LDACRYDDPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAV 384 (486)
T ss_dssp EEEEEECSSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEE
T ss_pred EEEeecCCcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEE
Confidence 998875442211 1111 246789999999999 999988999987 6999999999999999999976
Q ss_pred cCCC----CCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEE
Q 044992 486 VGDP----MPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVM 561 (597)
Q Consensus 486 ~~~~----~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~Vl 561 (597)
...+ ...+++|+|+|+++++ ...|.+|+++|++||+||||++ + .+|||||||++|+|..+++|+|+||
T Consensus 385 ~~~~~~~~~~~~~~l~k~D~~tg~-----~~~~~~~~~~~~~EpvFVPr~~-~--~~EdDG~Ll~~v~~~~~~~s~l~Vl 456 (486)
T PF03055_consen 385 GMDPERSPGFPFNGLVKVDLETGE-----VQRWSFGPGCFPGEPVFVPRPG-G--AEEDDGYLLSVVYDSDTNRSELLVL 456 (486)
T ss_dssp EECSCTS---EEEEEEEEETTTTE-----EEEEE-TTTEEE--EEEEE-TT-S---STT-EEEEEEEEETTTTCEEEEEE
T ss_pred eecccCCcCcCCCEEEEEeccccc-----ceEEECCCCceecceEeccCCC-C--CCCCceEEEEEEEECCCCccEEEEE
Confidence 5432 2468999999999998 6789999999999999999997 4 7999999999999999999999999
Q ss_pred eCCCCCCCeEEEEEcCCcCCCCcccccccC
Q 044992 562 DAKSPHLDIVAEVKLPQRVPAGFHGLFVRE 591 (597)
Q Consensus 562 DA~~~~~~pVA~v~LP~rVP~GFHG~fv~~ 591 (597)
||++|+.+||||++||++||+||||+|+++
T Consensus 457 DA~~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 457 DAKDLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp ETTTTCE--EEEEEESS---S-SEEEEEE-
T ss_pred eCCCCCcCceEEEECCCCCCCCccccccCC
Confidence 999999999999999999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=2.8e-104 Score=891.67 Aligned_cols=455 Identities=28% Similarity=0.463 Sum_probs=372.2
Q ss_pred ccCCCcCc-ccc-CCCccceeeccCCCCC-cceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCC--eEEEEEEeecc
Q 044992 111 FSNNLAPV-DEL-HPTQCQVTQGSLPSCL-EGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQG--QATFCSRYVKT 185 (597)
Q Consensus 111 l~gnfaPv-~E~-~~~~~~~V~G~IP~~L-~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G--~a~y~~RfV~T 185 (597)
++++|+|+ +|. .+..+.+|+|+||+|| +|||||||||+++.+.++.+||||||||||+|+|++| +|+|+||||||
T Consensus 60 ~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT 139 (610)
T PLN02969 60 YQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKT 139 (610)
T ss_pred hhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeecc
Confidence 57899999 677 4667767999999999 9999999999988765557899999999999999998 59999999999
Q ss_pred chhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCC
Q 044992 186 YKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSN 265 (597)
Q Consensus 186 ~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~ 265 (597)
++|++|+++|+.++... +++. .+.... . ....+....+|+|||||++|+||||||||+|.||+||++
T Consensus 140 ~~~~~E~~ag~~~~~~~---~~~p-fs~~~~-----~--~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~-- 206 (610)
T PLN02969 140 EAKKEEHDPETRTWRFT---YRGP-FSVLKG-----G--KRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSG-- 206 (610)
T ss_pred HHHHHHHHhCCcceeee---eccc-hhcccC-----C--CCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCcC--
Confidence 99999999998876311 1111 000000 0 000011124689999999999999999999999999864
Q ss_pred CCccceeeccC-----------------------------CCccc---cCccCCCcccCCCCcEEEEEeccC-----CCe
Q 044992 266 GDIETLGRCDL-----------------------------DGKLV---MNMTAHPKKDPETGEMFAFRYSPM-----PPF 308 (597)
Q Consensus 266 ~tLeTlG~~d~-----------------------------~g~l~---~~ftAHPk~DP~tGel~~f~~~~~-----~p~ 308 (597)
||||+|++|| .|.+. ..||||||+||.||||++|+|+.. +|.
T Consensus 207 -TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~ 285 (610)
T PLN02969 207 -TLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSN 285 (610)
T ss_pred -ccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCce
Confidence 9999999999 44443 368999999999999999999862 389
Q ss_pred EEEEEEcCCCCccceEEEeeCCccCCCCCcceeeecCCcEEEEEecceeccHHHHHh--cCC----CceeeCCCCCc-EE
Q 044992 309 VTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMIL--RRE----PLLHSDPTKVS-RI 381 (597)
Q Consensus 309 ~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~--~g~----~~~~~dp~~~t-r~ 381 (597)
+++|++|++|++.+.+.+++ +.++|||||||||||+||+++|+++|+.+++. .|. .++.|+|++++ ||
T Consensus 286 ~~~y~~d~~G~~~~~~~~~~-----p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~ 360 (610)
T PLN02969 286 FTFYEFDADFKLVQRKEFKL-----DDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPV 360 (610)
T ss_pred eEEEEECCCCCEecceeecC-----CCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEE
Confidence 99999999999988888988 77899999999999999999999999987552 343 45899999995 89
Q ss_pred EEeeCCCCCC-CceEE---EecC-CcceeeecceeecCC--Cc-EEEEEeecC-C-ChHH--H----H-----H----H-
Q 044992 382 GVMPRYAKNS-SQMRW---FDAP-GLNNIHAVNAWDEED--GN-VIVMVAPNI-L-SVEQ--V----F-----E----R- 435 (597)
Q Consensus 382 ~VipR~~~~~-~~v~w---~e~p-~~f~fH~~NA~Ee~d--g~-~Ivl~~~~~-~-~~~~--~----~-----~----~- 435 (597)
+||||++++. ..++| |++| +||+||++|||||++ |+ +||+++|+. + .... . + . .
T Consensus 361 ~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (610)
T PLN02969 361 YLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNN 440 (610)
T ss_pred EEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcc
Confidence 9999997543 57999 9998 599999999999742 32 588887532 2 1110 0 0 0 0
Q ss_pred h--hhccceEEEEEEeCC-CCcE---EEEEcc---CCCCccceeCCCCCCCCCceEEEecCCC------CCCCCceEEEe
Q 044992 436 M--ELIHCLMEKVRIDLR-TGVV---SRHPIS---ARNLDMAVINPGYVAKKNRYVYAAVGDP------MPKMTGLVKLD 500 (597)
Q Consensus 436 ~--~~~~~~l~r~ridl~-tG~v---~~~~L~---~~~~EfP~In~~~~Gr~~RY~Y~~~~~~------~~~~~glvK~D 500 (597)
. ....++|+||+||+. +|++ +.+.|. +.++|||+||++|.||+|||+|++..++ ...+++|+|+|
T Consensus 441 ~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D 520 (610)
T PLN02969 441 AKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLD 520 (610)
T ss_pred cCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEE
Confidence 0 113468999999996 7876 346775 6799999999999999999999876542 23579999999
Q ss_pred cCCCcccceeEEEEEcCCCCCCCCcEEEeeCC--CCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCC--eEEEEEc
Q 044992 501 LTKGERQECTVATRIYGPDCYGGEPFFAARDA--ADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLD--IVAEVKL 576 (597)
Q Consensus 501 l~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~--~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~--pVA~v~L 576 (597)
+++|+ ...|++|+++|+|||+||||++ ++ .+|||||||++|+|..+++|+|+||||++|+.+ ||||++|
T Consensus 521 ~~tg~-----~~~w~~g~~~~~~EPvFVPr~~~p~~--~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~L 593 (610)
T PLN02969 521 VPDGS-----ARSWSTGARRFVGEPVFVPRKSSQGG--GEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEV 593 (610)
T ss_pred CCCCC-----EEEEEeCCCCcccCCEEecCCCCCCC--CccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEEC
Confidence 99999 6789999999999999999952 13 689999999999999999999999999999875 9999999
Q ss_pred CCcC--CCCcccccccC
Q 044992 577 PQRV--PAGFHGLFVRE 591 (597)
Q Consensus 577 P~rV--P~GFHG~fv~~ 591 (597)
|+|| |+||||+|+++
T Consensus 594 P~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 594 PKHLTFPMGFHGFWADE 610 (610)
T ss_pred CcccCCCccccccccCC
Confidence 9998 99999999864
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-82 Score=697.21 Aligned_cols=497 Identities=35% Similarity=0.551 Sum_probs=459.9
Q ss_pred ccccchHHHHHhHHHH----hh-ccccccCCCCCCccccccCCCcCccccCCCccceeeccCCCCCcceEEeecCCCCCC
Q 044992 77 STTTNVSAVILNTLNK----LI-KPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYP 151 (597)
Q Consensus 77 ~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~p~~~l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~ 151 (597)
.+.+..+..++|...- +. ..|+ +++.+|.+++++||+|+.|.++....+++|.+|.+++|.++|||||+.|.
T Consensus 72 ~~~~~~~~~~~dg~~~~~~~~~~s~~y---~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~ 148 (582)
T KOG1285|consen 72 GPALLHAFHFLDGRVYYSSRYLESDPY---KKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFT 148 (582)
T ss_pred chhhhhheeecCCeEEEEeeecccCCc---ccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCccee
Confidence 4566667777776633 23 3678 89999999999999999999988888999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEeCC--eEEEEEEeeccchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhcccc
Q 044992 152 PRSEPYSPFDGDGMLHCIKISQG--QATFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLS 229 (597)
Q Consensus 152 p~~~~~H~FDGdGMlha~~f~~G--~a~y~~RfV~T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~ 229 (597)
|.+ ++|+|||+||+|+++|+.| +++|++||.+| |.+|...|+..++..+|+++|+ .|.+++...++|.+.++.+
T Consensus 149 pv~-g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~-~g~~~~~~~~~r~~~~~~~ 224 (582)
T KOG1285|consen 149 PVG-GHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGH-FGIARFGLFFARALTVLKN 224 (582)
T ss_pred ecC-CCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEee-echhhccccccceeEEEec
Confidence 987 8999999999999999999 89999999999 9999999999999999999987 7888888888999999999
Q ss_pred CCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCccc-eeeccCCCccccCccCCCcccCCCCcEEEEEeccCC-C
Q 044992 230 INSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIET-LGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMP-P 307 (597)
Q Consensus 230 ~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLeT-lG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~~-p 307 (597)
+..+.+.+|+.++++.++++|+.|+++||.+.+..-|++|| ||+++|+++|...+.||||+||.|||++++.|+..+ |
T Consensus 225 p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~ 304 (582)
T KOG1285|consen 225 PANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKP 304 (582)
T ss_pred CCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCC
Confidence 98889999999999999999999999999999888899999 999999999999999999999999999999999964 9
Q ss_pred eEEEEEEcCCCCccceEEEeeCCccCCCCCcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCC
Q 044992 308 FVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRY 387 (597)
Q Consensus 308 ~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~ 387 (597)
++.|++++.+|.+..++++.. ..|+|+||||+|||++|++|+++.+++.+|. .+++++.++..+..|+++.+++
T Consensus 305 ~l~~~~~~~~~~k~~~~~~~~-----~~~t~hh~na~eedg~vi~D~~~~~~~~~~~-~~~~p~~~~~~k~~rfg~~~k~ 378 (582)
T KOG1285|consen 305 YLIYHKFSKEGGKSVPVEIFP-----SFPTFHHDNAFEEDGCVVPDLCVYFDLSEMI-RDTSPLLYDNGKTLRFGLLSKT 378 (582)
T ss_pred cEEEEEeccccCccCcceecc-----CcceEEEeeeecccCceEEEEEEEechhhhh-cccceeeccccccccccccccc
Confidence 999999999999999888866 6899999999999999999999999999998 6666899999999999999999
Q ss_pred CCCCCceEEEecCCcceeeecceeecCCCc-EEEEEeecCCChHHHHHH-hhhccceEEEEEEeCCCCcEEEEEccC-CC
Q 044992 388 AKNSSQMRWFDAPGLNNIHAVNAWDEEDGN-VIVMVAPNILSVEQVFER-MELIHCLMEKVRIDLRTGVVSRHPISA-RN 464 (597)
Q Consensus 388 ~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~-~Ivl~~~~~~~~~~~~~~-~~~~~~~l~r~ridl~tG~v~~~~L~~-~~ 464 (597)
..+.+.++|.+.+.+++||++|+||+...+ +++|+..|+.+.+.++.+ .+....++.+.|+++++|...++.+.. .+
T Consensus 379 ~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~n 458 (582)
T KOG1285|consen 379 APDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKIN 458 (582)
T ss_pred CCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeecccc
Confidence 999999999999999999999999976554 778888898888887764 367789999999999999988777664 59
Q ss_pred CccceeCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEE
Q 044992 465 LDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYI 544 (597)
Q Consensus 465 ~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGyl 544 (597)
+|+++||..|.||+|||+|+++.++|++++||+|+|+.+|+ +.+|.+|.++++|||+|||+++ + .+||||||
T Consensus 459 l~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~-----~~~w~~~~~~~~GEP~FVP~p~-~--~eEDdG~I 530 (582)
T KOG1285|consen 459 LDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGE-----VKKWREGGGRPGGEPIFVPRPG-T--LEEDDGYI 530 (582)
T ss_pred cccccccceeecccceEEEEEecCCccCCCeEEEEEecCCc-----eeeEecCCCccCCCceEecCCC-C--cccCCcEE
Confidence 99999999999999999999999999999999999999999 7899999999999999999986 4 79999999
Q ss_pred EEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCcCCCCcccccccCccccc
Q 044992 545 LSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCK 596 (597)
Q Consensus 545 ls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~~~~l~~ 596 (597)
|++|||+.+.+|+|+|||||+ ++++||++||.||||||||+|++++||++
T Consensus 531 v~~v~~~~~~~s~l~ildAK~--l~~~ar~~vp~rvP~gfHG~f~~~~~~~~ 580 (582)
T KOG1285|consen 531 VSVVHDESKEKSFLLILDAKT--LEEVARVEVPTRVPYGFHGTFVSTTDLAT 580 (582)
T ss_pred EEEEEcCCCCcccEEEEeccc--cceeeEEecCCCCCCccceeEeccccccc
Confidence 999999999999999999999 89999999999999999999999999975
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-31 Score=294.71 Aligned_cols=348 Identities=19% Similarity=0.241 Sum_probs=255.3
Q ss_pred ceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEeeccchhhhhhccCCCCCCCCCCCC
Q 044992 127 QVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTIENTVGSPIVPSPFSSF 206 (597)
Q Consensus 127 ~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G~a~y~~RfV~T~~~~~E~~~gr~~~~~~~~~~ 206 (597)
..+.|.||.||+|+++||||+.+..|....+|||||-+++|++.+.||+++|++||++|+.|+......+.+. ++|
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~----~~f 112 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVS----GEF 112 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeee----ccc
Confidence 3468999999999999999998877776689999999999999999999999999999999999888888775 344
Q ss_pred CCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEe-CCEEEEEEeCCccEEEecCCCCCccceeeccCCCc-cc-cC
Q 044992 207 SGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFL-GNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGK-LV-MN 283 (597)
Q Consensus 207 ~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~-~grLlAl~E~g~Py~ld~~~~~tLeTlG~~d~~g~-l~-~~ 283 (597)
.+++..+.++.+.+.|++.-..+....+++||.++... |++|||.+|. |+.+++++ +||+|+..++|.+. +. ..
T Consensus 113 ~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet--~~~~ki~~-~tl~t~~~~~~~k~~v~~~~ 189 (582)
T KOG1285|consen 113 APVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTET--PHAVKIDP-GTLETTYKVRFTKTLVQEHT 189 (582)
T ss_pred cccCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCC--ceeEEecC-cccceeEeeccccceeeeee
Confidence 44422567888888888777666667789999999999 8899999998 78888875 59999999999994 33 46
Q ss_pred ccCCCcccCCCCcEEE-EEecc-CC---CeEEEEEEcCCCCccc--------eEEEeeCCccCCCCCcceeeecCCcEEE
Q 044992 284 MTAHPKKDPETGEMFA-FRYSP-MP---PFVTYFWFDANGEKQP--------DVHIKMPGQWLRHPPLMHDFAITKRYAI 350 (597)
Q Consensus 284 ftAHPk~DP~tGel~~-f~~~~-~~---p~~~~~~~d~~G~~~~--------~~~i~l~~~~~~~p~~iHDfaiTenyvV 350 (597)
++|||+.|+. |++++ ++... .. ..+++.+..+.|.... ...+.+.+.+.+.|.|||+|++||||+|
T Consensus 190 ~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~ 268 (582)
T KOG1285|consen 190 AGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIG 268 (582)
T ss_pred cccCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEe
Confidence 8999999985 99999 66553 22 3444555544443321 1223566888899999999999999999
Q ss_pred EEecceeccHHHHHhc------C---CCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCCcEEEE
Q 044992 351 FVDTQVQAYGMEMILR------R---EPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVM 421 (597)
Q Consensus 351 f~d~p~~~~~~~m~~~------g---~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl 421 (597)
++++|+.+++.+++.. | ..++.|-|+....++++.+.++...+++- .+++++||+.||||+++ .||.
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eedg--~vi~ 344 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEEDG--CVVP 344 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeecccC--ceEE
Confidence 9999999999988752 2 23467888889999999998764444443 34599999999999985 7888
Q ss_pred EeecCCChHHHHHHh-hhc--cceEEEEEEeCCCCcEEEE---EccCCCCccceeCCCCCCCCCceEEEecC
Q 044992 422 VAPNILSVEQVFERM-ELI--HCLMEKVRIDLRTGVVSRH---PISARNLDMAVINPGYVAKKNRYVYAAVG 487 (597)
Q Consensus 422 ~~~~~~~~~~~~~~~-~~~--~~~l~r~ridl~tG~v~~~---~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~ 487 (597)
|.|++.....+.... ... .....|+.++.++-...++ ++....+.|+ ...++.-+.|.+.|...+
T Consensus 345 D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~~ 415 (582)
T KOG1285|consen 345 DLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVIG 415 (582)
T ss_pred EEEEEechhhhhcccceeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEeec
Confidence 888766544221110 011 1223344444443222222 2334456677 444444466776665543
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.58 E-value=16 Score=39.31 Aligned_cols=253 Identities=16% Similarity=0.139 Sum_probs=125.0
Q ss_pred cEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEe--ccC-C-C-eEEEEEEcCCCCccceEEEeeCCc
Q 044992 257 PYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRY--SPM-P-P-FVTYFWFDANGEKQPDVHIKMPGQ 331 (597)
Q Consensus 257 Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~--~~~-~-p-~~~~~~~d~~G~~~~~~~i~l~~~ 331 (597)
-|.+|.+ +.+-+|..+ .++.+|.-+.|+.++++.-+. +.. . . .=.+=.+|.. ++....+|.||..
T Consensus 19 v~viD~d---~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k 88 (342)
T PF06433_consen 19 VYVIDAD---SGKLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPK 88 (342)
T ss_dssp EEEEETT---TTEEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS
T ss_pred EEEEECC---CCcEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCc
Confidence 3555543 444444433 456677777888777775432 111 0 1 1112223332 3344455666542
Q ss_pred cC-CCCCcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecce
Q 044992 332 WL-RHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNA 410 (597)
Q Consensus 332 ~~-~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA 410 (597)
.+ ..-.+-+.+++|. .|+-.+.|+=.--+-+.||+-.++ ..++-+++|.|....-
T Consensus 89 ~R~~~~~~~~~~~ls~-------------------dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP--- 144 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSA-------------------DGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP--- 144 (342)
T ss_dssp -B--BS--GGGEEE-T-------------------TSSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---
T ss_pred chheecccccceEEcc-------------------CCcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---
Confidence 00 1123455555541 233334555555688999998754 4578899998864332
Q ss_pred eecCCCcEEEEEeecCCChHHHHHHhhhccceEEEEEEeCCCCcEEEE--EccCCCCccceeCCCCCCCCCceEEEecCC
Q 044992 411 WDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSRH--PISARNLDMAVINPGYVAKKNRYVYAAVGD 488 (597)
Q Consensus 411 ~Ee~dg~~Ivl~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tG~v~~~--~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~ 488 (597)
+.+. . +-.-|. .+.|..++||- .|+..++ .+....-|-.-.++.|.+...+|.|....
T Consensus 145 ~~~~---~--F~~lC~-------------DGsl~~v~Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~- 204 (342)
T PF06433_consen 145 SGNR---G--FSMLCG-------------DGSLLTVTLDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE- 204 (342)
T ss_dssp EETT---E--EEEEET-------------TSCEEEEEETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT-
T ss_pred cCCC---c--eEEEec-------------CCceEEEEECC-CCCEeEeeccccCCCCcccccccceECCCCeEEEEecC-
Confidence 2222 1 112221 15577778873 4655432 33333335334456677778889886532
Q ss_pred CCCCCCceEEEecCCCcccceeEEEEEcC------CCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCC-----Ccee
Q 044992 489 PMPKMTGLVKLDLTKGERQECTVATRIYG------PDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKA-----GESK 557 (597)
Q Consensus 489 ~~~~~~glvK~Dl~tg~~~~~~~~~~~~g------~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~-----~~Se 557 (597)
.-|.-+|+...+.. ....|+.- +++-+|.=.-+. -....|-|.++.|.... ..+|
T Consensus 205 -----G~v~~~dlsg~~~~--~~~~~~~~t~~e~~~~WrPGG~Q~~A-------~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 205 -----GNVYSADLSGDSAK--FGKPWSLLTDAEKADGWRPGGWQLIA-------YHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp -----SEEEEEEETTSSEE--EEEEEESS-HHHHHTTEEE-SSS-EE-------EETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred -----CEEEEEeccCCccc--ccCcccccCccccccCcCCcceeeee-------eccccCeEEEEecCCCCCCccCCceE
Confidence 13445666554421 01122210 122111111111 12345677777776543 3589
Q ss_pred EEEEeCCCCCCCeEEEEEcCCc
Q 044992 558 FLVMDAKSPHLDIVAEVKLPQR 579 (597)
Q Consensus 558 l~VlDA~~~~~~pVA~v~LP~r 579 (597)
+||+|.++ .+-|+|+.|++.
T Consensus 271 VWv~D~~t--~krv~Ri~l~~~ 290 (342)
T PF06433_consen 271 VWVYDLKT--HKRVARIPLEHP 290 (342)
T ss_dssp EEEEETTT--TEEEEEEEEEEE
T ss_pred EEEEECCC--CeEEEEEeCCCc
Confidence 99999999 899999999753
No 9
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=73.46 E-value=1.4e+02 Score=32.29 Aligned_cols=279 Identities=16% Similarity=0.204 Sum_probs=142.6
Q ss_pred CCEEEEEEeCC-----ccEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccCCCeEEEEEEcCCCC
Q 044992 245 GNRLLALYEGD-----LPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGE 319 (597)
Q Consensus 245 ~grLlAl~E~g-----~Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~~p~~~~~~~d~~G~ 319 (597)
+.+||+.-|.| .-|++|.+ +|.|+-+++....|.= +.|=.+|+..--+|.-+|.. ..+.++.+.++|.
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~-~G~Lt~ln~~~~~g~~----p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~ 123 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPD-DGRLTFLNRQTLPGSP----PCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGS 123 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCC-CCeEEEeeccccCCCC----CeEEEECCCCCEEEEEEccC--ceEEEEEcccCCc
Confidence 45699988763 35777753 4899999887665542 36777888643455566654 5789999999999
Q ss_pred ccceEEE-eeCCcc---CCCCCccee--eecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCc
Q 044992 320 KQPDVHI-KMPGQW---LRHPPLMHD--FAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQ 393 (597)
Q Consensus 320 ~~~~~~i-~l~~~~---~~~p~~iHD--faiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~ 393 (597)
+...+.+ .-.+.- ....+=.|- |.-+-+|++.+|.-.- ..+.|+-+ -|.+.+.. ...
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-----------ri~~y~~~----dg~L~~~~--~~~ 186 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-----------RIFLYDLD----DGKLTPAD--PAE 186 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-----------eEEEEEcc----cCcccccc--ccc
Confidence 8765443 322210 011122444 4444556766653311 11112111 00111100 000
Q ss_pred eEEEecCCcceeeecceeecCCCcEEEEEeecCCChHHHHHHhhhccceEEEEEEeCCCCcEEE-EEccCCCCccceeCC
Q 044992 394 MRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSR-HPISARNLDMAVINP 472 (597)
Q Consensus 394 v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tG~v~~-~~L~~~~~EfP~In~ 472 (597)
++-=.-|-..+|| ++++ +.-+.+ .+.+.+.-|..|...|++++ +.+....-+|..-+.
T Consensus 187 v~~G~GPRHi~FH-------pn~k-~aY~v~-------------EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 187 VKPGAGPRHIVFH-------PNGK-YAYLVN-------------ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred cCCCCCcceEEEc-------CCCc-EEEEEe-------------ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 0000123456677 2332 322111 24467777888888888865 445544445554443
Q ss_pred C---CCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEE
Q 044992 473 G---YVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVH 549 (597)
Q Consensus 473 ~---~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~ 549 (597)
. ..-...||.|++--. ...-++.++|-.+|.. ....++--+|+++-.=.|-|...==-.+.|+..=|..|-.
T Consensus 246 ~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L---~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 246 AAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKL---ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEE---EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 2 233456999976311 0122567788877752 2344555566655433333321000002344444666777
Q ss_pred eCCCCceeEEEEeCCCCCCCeEEEEE
Q 044992 550 DEKAGESKFLVMDAKSPHLDIVAEVK 575 (597)
Q Consensus 550 d~~~~~Sel~VlDA~~~~~~pVA~v~ 575 (597)
|..+++=-++--|+.- .+|||.+-
T Consensus 321 d~~TG~L~~~~~~~~~--p~Pvcv~f 344 (346)
T COG2706 321 DKETGRLTLLGRYAVV--PEPVCVKF 344 (346)
T ss_pred cCCCceEEecccccCC--CCcEEEEE
Confidence 7666654444334444 56777653
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.95 E-value=41 Score=36.55 Aligned_cols=75 Identities=29% Similarity=0.392 Sum_probs=48.6
Q ss_pred CCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCc
Q 044992 476 AKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGE 555 (597)
Q Consensus 476 Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~ 555 (597)
....||+|.+..+ ..|.++|+.+++. +..... |.+|.=|.= ..|.-||++..+..
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~----v~~i~~-----G~~~~~i~~-------s~DG~~~~v~n~~~---- 99 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKV----VATIKV-----GGNPRGIAV-------SPDGKYVYVANYEP---- 99 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSE----EEEEE------SSEEEEEEE---------TTTEEEEEEEET----
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccE----EEEEec-----CCCcceEEE-------cCCCCEEEEEecCC----
Confidence 4457899987543 4799999999883 444433 345544443 23556888887764
Q ss_pred eeEEEEeCCCCCCCeEEEEEcC
Q 044992 556 SKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 556 Sel~VlDA~~~~~~pVA~v~LP 577 (597)
..+.|||+++ ++++.++...
T Consensus 100 ~~v~v~D~~t--le~v~~I~~~ 119 (369)
T PF02239_consen 100 GTVSVIDAET--LEPVKTIPTG 119 (369)
T ss_dssp TEEEEEETTT----EEEEEE--
T ss_pred CceeEecccc--ccceeecccc
Confidence 5899999999 8899988765
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=48.13 E-value=3.6e+02 Score=28.56 Aligned_cols=105 Identities=22% Similarity=0.339 Sum_probs=68.0
Q ss_pred eCCEEEEEEeCC----ccEEEecCCC-CCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccCCCeEEEEEEcCCC
Q 044992 244 LGNRLLALYEGD----LPYAVRLTSN-GDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANG 318 (597)
Q Consensus 244 ~~grLlAl~E~g----~Py~ld~~~~-~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~~p~~~~~~~d~~G 318 (597)
-+.+|||..|.+ .=..++++++ |+|+-+++..-.|. -..|-.+||....|+.-+|. ...+.+|.++.+|
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany~--~g~v~v~~l~~~g 120 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANYG--GGSVSVFPLDDDG 120 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEETT--TTEEEEEEECTTS
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEcc--CCeEEEEEccCCc
Confidence 357899999863 3334445455 78888887664443 24567788887777776665 4678999999999
Q ss_pred CccceEE-Eee----CCccCCCCCcceeeecCC--cEEEEEec
Q 044992 319 EKQPDVH-IKM----PGQWLRHPPLMHDFAITK--RYAIFVDT 354 (597)
Q Consensus 319 ~~~~~~~-i~l----~~~~~~~p~~iHDfaiTe--nyvVf~d~ 354 (597)
.+..... +.. |..........|...++. +|+++++.
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 8865433 222 111113457889998885 58877653
No 12
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=33.73 E-value=1.2e+02 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCCCCeEEEEEcCCcCCCCc
Q 044992 555 ESKFLVMDAKSPHLDIVAEVKLPQRVPAGF 584 (597)
Q Consensus 555 ~Sel~VlDA~~~~~~pVA~v~LP~rVP~GF 584 (597)
...+.|||+.+ ...+.++.+ ..-|.++
T Consensus 13 ~~~v~~id~~~--~~~~~~i~v-g~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTAT--NKVIATIPV-GGYPFGV 39 (42)
T ss_pred CCEEEEEECCC--CeEEEEEEC-CCCCceE
Confidence 45788999988 788999988 4666654
No 13
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=28.34 E-value=2.8e+02 Score=26.77 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=42.4
Q ss_pred CceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEE
Q 044992 494 TGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAE 573 (597)
Q Consensus 494 ~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~ 573 (597)
..|..+|..+|+. ++++.++++ . +.++.-+- -++|+|++. +....|..+|+++ .+.+.+
T Consensus 3 g~l~~~d~~tG~~----~W~~~~~~~-~-~~~~~~~~--------~~~~~v~~~-----~~~~~l~~~d~~t--G~~~W~ 61 (238)
T PF13360_consen 3 GTLSALDPRTGKE----LWSYDLGPG-I-GGPVATAV--------PDGGRVYVA-----SGDGNLYALDAKT--GKVLWR 61 (238)
T ss_dssp SEEEEEETTTTEE----EEEEECSSS-C-SSEEETEE--------EETTEEEEE-----ETTSEEEEEETTT--SEEEEE
T ss_pred CEEEEEECCCCCE----EEEEECCCC-C-CCccceEE--------EeCCEEEEE-----cCCCEEEEEECCC--CCEEEE
Confidence 3578999999984 666655442 1 22221111 145677666 3667899999998 778889
Q ss_pred EEcCCc
Q 044992 574 VKLPQR 579 (597)
Q Consensus 574 v~LP~r 579 (597)
..++..
T Consensus 62 ~~~~~~ 67 (238)
T PF13360_consen 62 FDLPGP 67 (238)
T ss_dssp EECSSC
T ss_pred eecccc
Confidence 988654
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.74 E-value=8.6e+02 Score=25.10 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCEEEEEEe-CCccEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccCCCeEEEEEEcCCCCccce
Q 044992 245 GNRLLALYE-GDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPMPPFVTYFWFDANGEKQPD 323 (597)
Q Consensus 245 ~grLlAl~E-~g~Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~~p~~~~~~~d~~G~~~~~ 323 (597)
+..||+..+ .+.-+.++++.+|.|+.++.....+. ..|=.++|+...+|.-++. ...+.+|.++.+|.....
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-----p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-----PTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-----ceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCc
Confidence 334666544 33344455544455665555433221 2233467776666666554 456788888888865432
Q ss_pred EEEeeCCccCCCCCcceeeecCCc--EEEEE
Q 044992 324 VHIKMPGQWLRHPPLMHDFAITKR--YAIFV 352 (597)
Q Consensus 324 ~~i~l~~~~~~~p~~iHDfaiTen--yvVf~ 352 (597)
+. .+ ......|..+++.+ |+++.
T Consensus 119 ~~-~~-----~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 119 IQ-II-----EGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred ee-ec-----cCCCcccEeEeCCCCCEEEEe
Confidence 21 12 22244677777753 65444
No 15
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=72 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=28.7
Q ss_pred EEEeCCEEEEEE-eCCccEEEecCCCCCccceeeccCCCc
Q 044992 241 LAFLGNRLLALY-EGDLPYAVRLTSNGDIETLGRCDLDGK 279 (597)
Q Consensus 241 v~~~~grLlAl~-E~g~Py~ld~~~~~tLeTlG~~d~~g~ 279 (597)
+..+++.+|+|+ -.|..|..|++ ||+++|++.|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d~~---t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYDAD---TLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEEChH---HhhhhcccccCCc
Confidence 455788888875 56678888764 9999999999875
Done!