Query 044992
Match_columns 597
No_of_seqs 228 out of 1072
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 6E-133 2E-137 1109.6 46.2 502 75-596 8-526 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 2E-116 6E-121 971.5 43.2 446 111-591 20-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 1E-111 3E-116 942.2 39.5 456 111-591 12-533 (533)
4 1qks_A Cytochrome CD1 nitrite 59.6 1.3E+02 0.0043 33.0 14.8 104 445-577 179-285 (567)
5 3mbr_X Glutamine cyclotransfer 35.3 2.2E+02 0.0075 27.8 10.5 95 447-577 47-143 (243)
6 3c75_H MADH, methylamine dehyd 32.7 3.1E+02 0.011 28.8 11.9 112 445-578 101-220 (426)
7 2iwa_A Glutamine cyclotransfer 29.8 3E+02 0.01 26.9 10.6 74 480-577 32-105 (266)
8 3sjl_D Methylamine dehydrogena 29.0 4.6E+02 0.016 27.1 12.4 120 445-586 61-191 (386)
9 3nol_A Glutamine cyclotransfer 28.3 3.6E+02 0.012 26.6 10.8 96 447-577 69-165 (262)
10 1kb0_A Quinohemoprotein alcoho 27.6 6.2E+02 0.021 27.9 13.9 69 494-577 283-356 (677)
11 3mbr_X Glutamine cyclotransfer 26.6 1.7E+02 0.0058 28.6 7.9 75 480-578 31-105 (243)
12 3c75_H MADH, methylamine dehyd 25.2 2.6E+02 0.0088 29.4 9.7 80 479-577 84-168 (426)
13 4guc_A Protein BA_2500; virule 23.0 2E+02 0.0069 25.2 6.7 47 292-351 34-87 (120)
14 3nol_A Glutamine cyclotransfer 21.8 2.7E+02 0.0094 27.4 8.5 74 481-578 54-127 (262)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=5.8e-133 Score=1109.58 Aligned_cols=502 Identities=37% Similarity=0.705 Sum_probs=459.4
Q ss_pred CcccccchHHHHHhHHHHh----h---ccccccCCCCCCccccccCCCcCccccCCCccceeeccCCCCCcceEEeecCC
Q 044992 75 SVSTTTNVSAVILNTLNKL----I---KPKLQAQPLSLDPSRAFSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPN 147 (597)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~p~~~l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPn 147 (597)
.|+++|++|+++||++|++ + ++|| ++++||+++|+|||+||.|++....+.|+|+||+||+|+|||||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn 84 (529)
T 3npe_A 8 QLNLFQRAAAAALDAFEEGFVANVLERPHGL---PSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN 84 (529)
T ss_dssp CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCC---CTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred CCChhHHHHHHHHHHHHHHHHhhhccccCCC---CCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence 4788999999999999992 2 4678 9999999999999999977776666779999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEeCCeE-EEEEEeeccchhhhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhc
Q 044992 148 PQYPPRSEPYSPFDGDGMLHCIKISQGQA-TFCSRYVKTYKYTIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTG 226 (597)
Q Consensus 148 p~~~p~~~~~H~FDGdGMlha~~f~~G~a-~y~~RfV~T~~~~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g 226 (597)
|+|.+.. ++||||||||||+|+|++|+| +|+||||||++|++|+++|+++|++.++.+.+. +++.|....+.|...+
T Consensus 85 P~f~~~~-~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 162 (529)
T 3npe_A 85 PCFDPVA-GHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGH-SGIARLALFYARAACG 162 (529)
T ss_dssp CSSCCSS-CCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSS-THHHHHHHHHHHHHTT
T ss_pred cCcCCcC-CCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCccccccccccccc-chhhhhhhhhhhcccc
Confidence 9887755 799999999999999999999 999999999999999999999999988888776 7788877777888778
Q ss_pred cccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCccceeeccCCCccccCccCCCcccCCCCcEEEEEeccC-
Q 044992 227 QLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIETLGRCDLDGKLVMNMTAHPKKDPETGEMFAFRYSPM- 305 (597)
Q Consensus 227 ~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLeTlG~~d~~g~l~~~ftAHPk~DP~tGel~~f~~~~~- 305 (597)
+++..+++++|||||++|+||||||||+|+||++++||++||||+|++||+|+|..+||||||+||+||||++|+|+..
T Consensus 163 ~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~ 242 (529)
T 3npe_A 163 LVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIK 242 (529)
T ss_dssp SCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSS
T ss_pred cccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCC
Confidence 7776667799999999999999999999999999988767999999999999999999999999999999999999985
Q ss_pred CCeEEEEEEcCCCCccceEEEeeCCccCCCCCcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEee
Q 044992 306 PPFVTYFWFDANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMP 385 (597)
Q Consensus 306 ~p~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~Vip 385 (597)
+|+++||++|++|++.+.+.|++ +.|+|||||||||||+||+++|+++|+.+|+ .|++++.|+|++++||||||
T Consensus 243 ~p~~~~~~~~~~G~~~~~~~i~~-----~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~-~g~~~~~~~p~~~tr~~Vip 316 (529)
T 3npe_A 243 RPYLKYFYFRPDGTKSDDVEIPL-----EQPTMIHDFAITENLVVVPDHQVVFKLQEML-RGGSPVVLDAAKTSRFGVLP 316 (529)
T ss_dssp SCCCEEEEECTTCCBCCCEECCC-----SSCBCCCCCEECSSEEEEEECSEEECGGGGT-TTCCSEEECTTSCCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEEEeC-----CCCceEeeEEecCCeEEEEeCCeEEcHHHHh-CCCCceEECCCCCcEEEEEE
Confidence 59999999999999988888887 7899999999999999999999999999998 78899999999999999999
Q ss_pred CCCCCCCceEEEecCCcceeeecceeecCCCcEEEEEeecCCChHHHHHH-hhhccceEEEEEEeCCCCcEEEEEcc---
Q 044992 386 RYAKNSSQMRWFDAPGLNNIHAVNAWDEEDGNVIVMVAPNILSVEQVFER-MELIHCLMEKVRIDLRTGVVSRHPIS--- 461 (597)
Q Consensus 386 R~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~-~~~~~~~l~r~ridl~tG~v~~~~L~--- 461 (597)
|++++.+.++||++|+||+||++|||||+++++||++.||+.+.+.+++. .+.+.++|+|||||+++|+++++.|.
T Consensus 317 R~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~ 396 (529)
T 3npe_A 317 KHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPS 396 (529)
T ss_dssp TTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSS
T ss_pred CCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccc
Confidence 99877678999999999999999999997656888888887665555433 24567899999999999999999887
Q ss_pred -CCCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCC---CCCC
Q 044992 462 -ARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAA---DKEA 537 (597)
Q Consensus 462 -~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~---~~~~ 537 (597)
+.++|||+||++|+||+|||+|+++.++++++++|+|+|++||+ ...||+|++||+|||+||||+++ + +
T Consensus 397 ~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~-----~~~~~~g~~~~~~EPvFVPrp~~~~~~--~ 469 (529)
T 3npe_A 397 QQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE-----LTKFEYGEGRFGGEPCFVPMDPAAAHP--R 469 (529)
T ss_dssp SCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCC-----EEEEECCTTBCCCCCEEEECCSCSSSS--C
T ss_pred cCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCc-----eEEEEcCCCccccCCEeeeCCCCCCCC--C
Confidence 48999999999999999999999988877889999999999999 67899999999999999999861 2 6
Q ss_pred CCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCcCCCCcccccccCccccc
Q 044992 538 DEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVREIDFCK 596 (597)
Q Consensus 538 ~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~~~~l~~ 596 (597)
+|||||||++|||+.+++|+|+||||++ +++|||++||+||||||||+|++++||++
T Consensus 470 ~EDDG~lLs~V~d~~~~~S~LlILDA~~--l~~vArv~LP~rvP~GfHG~wv~~~~l~~ 526 (529)
T 3npe_A 470 GEDDGYVLTFVHDERAGTSELLVVNAAD--MRLEATVQLPSRVPFGFHGTFITGQELEA 526 (529)
T ss_dssp CTTCEEEEEEEEBSSCCCEEEEEEETTT--TEEEEEEEESSCCCCCSCEEEEEHHHHTT
T ss_pred CCCCcEEEEEEEECCCCcEEEEEEeCCC--CccceEEECCCCCCCCccccccCHHHhhh
Confidence 8999999999999999999999999999 56899999999999999999999999864
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=1.7e-116 Score=971.53 Aligned_cols=446 Identities=27% Similarity=0.439 Sum_probs=392.3
Q ss_pred ccCCCcCc-cccCCCccceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEE-eCCeEEEEEEeeccchh
Q 044992 111 FSNNLAPV-DELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKI-SQGQATFCSRYVKTYKY 188 (597)
Q Consensus 111 l~gnfaPv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f-~~G~a~y~~RfV~T~~~ 188 (597)
++++|+|+ +|.++ .+.+|+|+||+||+|+|||||||+++.+....+||||||||||+|+| ++|+|+|+||||||++|
T Consensus 20 ~~~~f~~~~~E~~~-~l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~~ 98 (490)
T 2biw_A 20 WLRGYQSQPQEWDY-WVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGY 98 (490)
T ss_dssp HHHTTSCCCSCEEE-ECCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHHH
T ss_pred hhhhccCccccCCc-ccceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHHH
Confidence 67899999 67754 45559999999999999999999987654447899999999999999 99999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCc
Q 044992 189 TIENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDI 268 (597)
Q Consensus 189 ~~E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tL 268 (597)
++|+++|+++|++.+++..+. ..+. + .++ ...+|+|||||++|+||||||||+|.||+||+. ||
T Consensus 99 ~~e~~ag~~~~~~~fg~~~~~----~~~~----~----~~~-~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~---tL 162 (490)
T 2biw_A 99 VEEQKAGKMIYRGVFGSQPAG----GWLK----T----IFD-LRLKNIANTNITYWGDRLLALWEGGQPHRLEPS---NL 162 (490)
T ss_dssp HHHHHHTSCCSBCTTSCCCSS----THHH----H----TTC-CCBCCCCCSEEEEETTEEEEECTTSCCEEECTT---TC
T ss_pred HHHHHhCCcccccccccCCCC----chhh----h----hcc-cccCCCCEEEEEEECCEEEEEEcCCCCEecccc---cc
Confidence 999999999998756654332 2211 1 111 124689999999999999999999999999963 99
Q ss_pred cceeeccCCCcc-c-cCccCCCcccCC------CCcEEEEEeccCCC-eEEEEEEcCCCCccceEEEeeCCccCCCCCcc
Q 044992 269 ETLGRCDLDGKL-V-MNMTAHPKKDPE------TGEMFAFRYSPMPP-FVTYFWFDANGEKQPDVHIKMPGQWLRHPPLM 339 (597)
Q Consensus 269 eTlG~~d~~g~l-~-~~ftAHPk~DP~------tGel~~f~~~~~~p-~~~~~~~d~~G~~~~~~~i~l~~~~~~~p~~i 339 (597)
||+|.+||+|+| . ..||||||+||. ||||++|+|+..++ .++||++|++|++.+.+.+++ +.|+||
T Consensus 163 eT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~-----~~~~~~ 237 (490)
T 2biw_A 163 ATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETF-----PGFAFI 237 (490)
T ss_dssp CEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEE-----ESCCCC
T ss_pred cEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeC-----CCCceE
Confidence 999999999999 5 489999999999 99999999998764 499999999999999888998 689999
Q ss_pred eeeecCCcEEEEEecceeccHHHHHhcC---CCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCC
Q 044992 340 HDFAITKRYAIFVDTQVQAYGMEMILRR---EPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDG 416 (597)
Q Consensus 340 HDfaiTenyvVf~d~p~~~~~~~m~~~g---~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg 416 (597)
|||||||||+||+++|+.+|+.+|+.++ +.++.|+|++++|||||||+ + +.++||++|+||+||++|||||++
T Consensus 238 HDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f~~~~~f~fH~~NA~Ee~~- 313 (490)
T 2biw_A 238 HDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRIPVQAGFVFHHANAFEENG- 313 (490)
T ss_dssp CCCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEEEECCCEEEEEEEEEEETT-
T ss_pred eeeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEEecCCCeEEecccceecCC-
Confidence 9999999999999999999999998543 35799999999999999998 3 568999999999999999999854
Q ss_pred cEEEEEeecCCChHHH-----HHH---hhhccceEEEEEEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCC
Q 044992 417 NVIVMVAPNILSVEQV-----FER---MELIHCLMEKVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGD 488 (597)
Q Consensus 417 ~~Ivl~~~~~~~~~~~-----~~~---~~~~~~~l~r~ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~ 488 (597)
+||++.|++.+.+.+ +.. .....++|+|||||+++|+++++.|.+.++|||+||++|.||+|||+|+++.+
T Consensus 314 -~Iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~ 392 (490)
T 2biw_A 314 -KIILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAH 392 (490)
T ss_dssp -EEEEEEEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECS
T ss_pred -eEEEEEeccCCcccccccccccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeec
Confidence 899998876543210 111 12356899999999999999999999999999999999999999999998764
Q ss_pred ---CCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCC
Q 044992 489 ---PMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKS 565 (597)
Q Consensus 489 ---~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~ 565 (597)
+++++++|+|+|++||+ .+.|++|+++|+|||+||||++ + ++|||||||++|||+++++|+|+||||++
T Consensus 393 ~~~~~~~~~~l~K~D~~tg~-----~~~~~~g~g~~~~EPvFVPrp~-~--~~EDDG~ll~~V~d~~~~~S~l~IlDA~~ 464 (490)
T 2biw_A 393 HSTGNAPLQAILKVDLESGT-----ETLRSFAPHGFAGEPIFVPRPG-G--VAEDDGWLLCLIYKADLHRSELVILDAQD 464 (490)
T ss_dssp SSSSCCCCCEEEEEETTTTE-----EEEEECTTTEECCCCEEEECTT-C--CSTTCEEEEEEEEETTTTEEEEEEEETTC
T ss_pred CCCCCCCCCeEEEEECCCCC-----EEEEECCCCccccCCEEecCCC-C--CCCCCcEEEEEEEeCCCCceeEEEEccCC
Confidence 46678999999999998 6788999999999999999997 4 79999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCcCCCCcccccccC
Q 044992 566 PHLDIVAEVKLPQRVPAGFHGLFVRE 591 (597)
Q Consensus 566 ~~~~pVA~v~LP~rVP~GFHG~fv~~ 591 (597)
|+.+||||++||+||||||||+|++.
T Consensus 465 ~~~~pvArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 465 ITAPAIATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp TTSCCSEEEECSSCCCCCCCEEEEEC
T ss_pred CCcCceEEEeCCCcCCCCccccccCC
Confidence 99999999999999999999999973
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=9.6e-112 Score=942.21 Aligned_cols=456 Identities=21% Similarity=0.299 Sum_probs=365.1
Q ss_pred ccCCCcCccccCCCccceeeccCCCCCcceEEeecCCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEEeeccchhhh
Q 044992 111 FSNNLAPVDELHPTQCQVTQGSLPSCLEGAYIRNGPNPQYPPRSEPYSPFDGDGMLHCIKISQGQATFCSRYVKTYKYTI 190 (597)
Q Consensus 111 l~gnfaPv~E~~~~~~~~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~~H~FDGdGMlha~~f~~G~a~y~~RfV~T~~~~~ 190 (597)
++.+|+|++|+++...+.|+|+||+||+|+|||||||+++.+....+||||||||||+|+|++|+|+|+||||||++|++
T Consensus 12 ~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~ 91 (533)
T 3kvc_A 12 YKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVR 91 (533)
T ss_dssp GGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHH
T ss_pred hhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHH
Confidence 67899999998855556789999999999999999998765444479999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCccchhhhhhhHHhHhhccccCCCCCCcceeEEEEeCCEEEEEEeCCccEEEecCCCCCccc
Q 044992 191 ENTVGSPIVPSPFSSFSGPLAFLTRAGVLAARVLTGQLSINSGFGLANTSLAFLGNRLLALYEGDLPYAVRLTSNGDIET 270 (597)
Q Consensus 191 E~~~gr~~~~~~~~~~~g~~~~~~~~~~~~~r~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~g~Py~ld~~~~~tLeT 270 (597)
|+++|+++|+. ++. . +...+|...+.|.+..+ .....+++|||||++|+||||||||++.||+||+. ||||
T Consensus 92 e~~agr~~~~~-fg~---~-~~~~p~~~~~~~~~~~~-~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~---tLeT 162 (533)
T 3kvc_A 92 AMTEKRIVITE-FGT---C-AFPDPCKNIFSRFFSYF-RGVEVTDNALVNIYPVGEDYYACTETNFITKVNPE---TLET 162 (533)
T ss_dssp HHHHTSCCSCB-TTB---C-C--------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTT---TCCE
T ss_pred HHHcCCcceec-cCc---c-cCCcchhhHHHHHHHhh-ccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChH---Hccc
Confidence 99999999853 222 2 23345555555543322 22235689999999999999999999999999863 9999
Q ss_pred eeeccCCCccc-cCccCCCcccCCCCcEEEEEeccCC---CeEEEEEEcCCCC-----c-cceEEEeeCCccCCCCCcce
Q 044992 271 LGRCDLDGKLV-MNMTAHPKKDPETGEMFAFRYSPMP---PFVTYFWFDANGE-----K-QPDVHIKMPGQWLRHPPLMH 340 (597)
Q Consensus 271 lG~~d~~g~l~-~~ftAHPk~DP~tGel~~f~~~~~~---p~~~~~~~d~~G~-----~-~~~~~i~l~~~~~~~p~~iH 340 (597)
+|++||+|+|. ..||||||+|| |||||+|+|+..+ +.|.+|++++++. . ..++.+++|+.+...|+|||
T Consensus 163 ~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iH 241 (533)
T 3kvc_A 163 IKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVH 241 (533)
T ss_dssp EEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCC
T ss_pred ccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceee
Confidence 99999999997 57999999999 9999999999863 6788999986532 2 22344577776668999999
Q ss_pred eeecCCcEEEEEecceeccHHHHHhc----CCC---ceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeec
Q 044992 341 DFAITKRYAIFVDTQVQAYGMEMILR----REP---LLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDE 413 (597)
Q Consensus 341 DfaiTenyvVf~d~p~~~~~~~m~~~----g~~---~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee 413 (597)
||||||||+||+++|+++|+.+|+.+ +.+ ++.|+|++++|||||||++++. .++||++++||+||++|||||
T Consensus 242 DFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~-~~~~~~~~~~f~fH~~NA~Ee 320 (533)
T 3kvc_A 242 SFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKY-INNKYRTSPFNLFHHINTYED 320 (533)
T ss_dssp CCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEE-EEEEEEECCEEEEEEEEEEEE
T ss_pred eeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCc-ccEEEEeCCeeEEeeeeeEEe
Confidence 99999999999999999999999854 343 6899999999999999997642 357889999999999999998
Q ss_pred CCCcEEEEEeecCCC---------hHHHHH------Hh--hhccceEEEEEEeCCCC-----------------------
Q 044992 414 EDGNVIVMVAPNILS---------VEQVFE------RM--ELIHCLMEKVRIDLRTG----------------------- 453 (597)
Q Consensus 414 ~dg~~Ivl~~~~~~~---------~~~~~~------~~--~~~~~~l~r~ridl~tG----------------------- 453 (597)
++ +||++.|++.+ .+++.+ .. ....++|+|||||++++
T Consensus 321 ~~--~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~ 398 (533)
T 3kvc_A 321 HE--FLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSD 398 (533)
T ss_dssp TT--EEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTT
T ss_pred CC--EEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccC
Confidence 64 89999887554 122111 00 13567899999999875
Q ss_pred -c--EEEEEccC--C-CCccceeCC-CCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcE
Q 044992 454 -V--VSRHPISA--R-NLDMAVINP-GYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPF 526 (597)
Q Consensus 454 -~--v~~~~L~~--~-~~EfP~In~-~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPv 526 (597)
+ ++++.|.+ . ++|||+||+ +|+||+|||+|+++.+ .+.+++|+|+|++||+ .. .|+++++|+|||+
T Consensus 399 ~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~tg~-----~~-~w~~~~~~~~EPi 471 (533)
T 3kvc_A 399 ETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKTKE-----TW-VWQEPDSYPSEPI 471 (533)
T ss_dssp SEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTTCC-----EE-EECCTTCBCCCCE
T ss_pred CceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCCCC-----EE-EEeCCCccccCce
Confidence 2 44567774 6 899999999 7999999999998765 3578999999999998 33 4679999999999
Q ss_pred EEeeCCCCCCCCCCCcEEEEEEEeCCC--CceeEEEEeCCCCCCCeEEEEEcCCcCCCCcccccccC
Q 044992 527 FAARDAADKEADEDDGYILSYVHDEKA--GESKFLVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVRE 591 (597)
Q Consensus 527 FVPr~~~~~~~~EDDGylls~V~d~~~--~~Sel~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~~ 591 (597)
||||++ + ++|||||||++|||+.+ .+|+|+||||++ +++|||++||+||||||||+|++.
T Consensus 472 FVPrp~-~--~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~--l~~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 472 FVSHPD-A--LEEDDGVVLSVVVSPGAGQKPAYLLILNAKD--LSEVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp EEECTT-C--CSTTCEEEEEEEECCSTTSCSEEEEEEETTT--CCEEEEEEESSCCCCCCEEEEEEC
T ss_pred eecCCC-C--CCCCCcEEEEEEEeCCcCCCccEEEEEeCCC--ChhhEEEEeCCCCCCCccccccCC
Confidence 999997 4 79999999999999986 567999999999 568999999999999999999974
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=59.57 E-value=1.3e+02 Score=32.98 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred EEEEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEEecC--CCcccceeEEEEEcCCCCCC
Q 044992 445 KVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLT--KGERQECTVATRIYGPDCYG 522 (597)
Q Consensus 445 r~ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~--tg~~~~~~~~~~~~g~g~~~ 522 (597)
-..||+.|+++..+.-.........+++ ..||+|.+..+ +.|..+|+. +++. +....- +
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~d-----g~V~viD~~~~t~~~----v~~i~~-----G 239 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGRD-----GKVNMIDLWMKEPTT----VAEIKI-----G 239 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEETT-----SEEEEEETTSSSCCE----EEEEEC-----C
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcCC-----CeEEEEECCCCCCcE----eEEEec-----C
Confidence 3457888887765533332223334444 45799976432 479999996 6652 222222 3
Q ss_pred CCcEEEeeCCCCCCCC-CCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 523 GEPFFAARDAADKEAD-EDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 523 gEPvFVPr~~~~~~~~-EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
.+|.-+.-.. -. -|..||++.-++. ..+.|+|+.+ ++++.++.+.
T Consensus 240 ~~P~~ia~s~----~~~pDGk~l~v~n~~~----~~v~ViD~~t--~~~~~~i~~~ 285 (567)
T 1qks_A 240 SEARSIETSK----MEGWEDKYAIAGAYWP----PQYVIMDGET--LEPKKIQSTR 285 (567)
T ss_dssp SEEEEEEECC----STTCTTTEEEEEEEET----TEEEEEETTT--CCEEEEEECC
T ss_pred CCCceeEEcc----ccCCCCCEEEEEEccC----CeEEEEECCC--CcEEEEEecc
Confidence 4555444321 00 2455887776553 5688999999 8899988875
No 5
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=35.34 E-value=2.2e+02 Score=27.76 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred EEeCCCCcEEEEE-ccCCCCccce-eCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCC
Q 044992 447 RIDLRTGVVSRHP-ISARNLDMAV-INPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGE 524 (597)
Q Consensus 447 ridl~tG~v~~~~-L~~~~~EfP~-In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gE 524 (597)
++|++||++.++. +.... |+. |.. .....|..... -+.+.++|..|.+. +..+.++ +|
T Consensus 47 ~vD~~tgkv~~~~~l~~~~--fgeGi~~-----~~~~ly~ltw~----~~~v~v~D~~tl~~----~~ti~~~-----~~ 106 (243)
T 3mbr_X 47 KVDLETGRILQRAEVPPPY--FGAGIVA-----WRDRLIQLTWR----NHEGFVYDLATLTP----RARFRYP-----GE 106 (243)
T ss_dssp EEETTTCCEEEEEECCTTC--CEEEEEE-----ETTEEEEEESS----SSEEEEEETTTTEE----EEEEECS-----SC
T ss_pred EEECCCCCEEEEEeCCCCc--ceeEEEE-----eCCEEEEEEee----CCEEEEEECCcCcE----EEEEeCC-----CC
Confidence 5799999998664 32211 111 111 12457776432 25788999999873 4444443 23
Q ss_pred cEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 525 PFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 525 PvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
+.= -..|.+.|++ -| +.+.|.++|+++ +.+++++.+-
T Consensus 107 Gwg---------lt~dg~~L~v--Sd---gs~~l~~iDp~t--~~~~~~I~V~ 143 (243)
T 3mbr_X 107 GWA---------LTSDDSHLYM--SD---GTAVIRKLDPDT--LQQVGSIKVT 143 (243)
T ss_dssp CCE---------EEECSSCEEE--EC---SSSEEEEECTTT--CCEEEEEECE
T ss_pred ceE---------EeeCCCEEEE--EC---CCCeEEEEeCCC--CeEEEEEEEc
Confidence 321 1123333332 24 356899999999 7899999884
No 6
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=32.72 E-value=3.1e+02 Score=28.83 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=61.9
Q ss_pred EEEEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCCCC-----CCCCceEEEecCCCcccceeEEEEEcC-C
Q 044992 445 KVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPM-----PKMTGLVKLDLTKGERQECTVATRIYG-P 518 (597)
Q Consensus 445 r~ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~-----~~~~glvK~Dl~tg~~~~~~~~~~~~g-~ 518 (597)
-..||+.|+++..+.-... .|-|- .-...|++|.+..... ..-+.|..+|..+++. +.....+ +
T Consensus 101 VsVID~~t~~vv~~I~vG~---~Pgia---~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v----v~~I~v~g~ 170 (426)
T 3c75_H 101 QFVIDGSTGRILGMTDGGF---LPHPV---AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP----IADIELPDA 170 (426)
T ss_dssp EEEEETTTTEEEEEEEECS---SCEEE---ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE----EEEEEETTC
T ss_pred EEEEECCCCEEEEEEECCC---CCceE---ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE----EEEEECCCc
Confidence 3457888888765432221 22111 1234578887642100 0125799999999883 3334444 3
Q ss_pred CCC--CCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCC
Q 044992 519 DCY--GGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQ 578 (597)
Q Consensus 519 g~~--~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~ 578 (597)
+++ +..|--+- -..|..||.+.- . .....+.|+|.++ .+.++++.+|.
T Consensus 171 ~r~~~g~~P~~~~-------~spDGk~lyV~n--~-~~~~~VsVID~~t--~kvv~~I~v~g 220 (426)
T 3c75_H 171 PRFLVGTYQWMNA-------LTPDNKNLLFYQ--F-SPAPAVGVVDLEG--KTFDRMLDVPD 220 (426)
T ss_dssp CCCCBSCCGGGSE-------ECTTSSEEEEEE--C-SSSCEEEEEETTT--TEEEEEEECCS
T ss_pred cccccCCCcceEE-------EcCCCCEEEEEe--c-CCCCeEEEEECCC--CeEEEEEEcCC
Confidence 333 11221111 234555766652 2 1246799999999 78999999874
No 7
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=29.78 E-value=3e+02 Score=26.94 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=41.7
Q ss_pred ceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEE
Q 044992 480 RYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFL 559 (597)
Q Consensus 480 RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~ 559 (597)
...|.+.+.. .-+.|.++|+.|++. +.....+++.|+ | -+.+. + +--| +-++ ....+.
T Consensus 32 g~Lyvstg~~--~~s~v~~iD~~tg~v----~~~i~l~~~~fg-e-Gi~~~-g-------~~ly----v~t~--~~~~v~ 89 (266)
T 2iwa_A 32 DTLFESTGLY--GRSSVRQVALQTGKV----ENIHKMDDSYFG-E-GLTLL-N-------EKLY----QVVW--LKNIGF 89 (266)
T ss_dssp TEEEEEECST--TTCEEEEEETTTCCE----EEEEECCTTCCE-E-EEEEE-T-------TEEE----EEET--TCSEEE
T ss_pred CeEEEECCCC--CCCEEEEEECCCCCE----EEEEecCCCcce-E-EEEEe-C-------CEEE----EEEe--cCCEEE
Confidence 3688765421 236899999999983 444445554443 2 12222 1 1122 2232 334577
Q ss_pred EEeCCCCCCCeEEEEEcC
Q 044992 560 VMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 560 VlDA~~~~~~pVA~v~LP 577 (597)
|+|+++ ++.++++..+
T Consensus 90 viD~~t--~~v~~~i~~g 105 (266)
T 2iwa_A 90 IYDRRT--LSNIKNFTHQ 105 (266)
T ss_dssp EEETTT--TEEEEEEECC
T ss_pred EEECCC--CcEEEEEECC
Confidence 888877 6777877766
No 8
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=29.04 E-value=4.6e+02 Score=27.13 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=65.1
Q ss_pred EEEEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCC-C---C-CCCCceEEEecCCCcccceeEEEEEcCCC
Q 044992 445 KVRIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGD-P---M-PKMTGLVKLDLTKGERQECTVATRIYGPD 519 (597)
Q Consensus 445 r~ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~-~---~-~~~~glvK~Dl~tg~~~~~~~~~~~~g~g 519 (597)
=+.||+.|+++..+.-....-. -.+++ ..|++|.+..- + + ..-+.|..+|..|++. +.....+.|
T Consensus 61 V~ViD~~t~~v~~~I~vG~~P~-va~sp-----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v----~~~I~v~~g 130 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDGGFLPN-PVVAD-----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP----TADIELPDA 130 (386)
T ss_dssp EEEEETTTTEEEEEEEECSSCE-EEECT-----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE----EEEEEETTC
T ss_pred EEEEECCCCeEEEEEECCCCCc-EEECC-----CCCEEEEEcccccccccCCCCCEEEEEECCCCeE----EEEEECCCc
Confidence 3457888888765432222211 22333 46778876310 0 0 0124689999999883 444444542
Q ss_pred C---CCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCc---CCCCccc
Q 044992 520 C---YGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQR---VPAGFHG 586 (597)
Q Consensus 520 ~---~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~r---VP~GFHG 586 (597)
. .+..|--+.= ..|..||.+. +. .....+.|+|+++ .+.+++|.+|.. .|.|-|.
T Consensus 131 ~r~~~g~~P~~~a~-------spDGk~lyVa--n~-~~~~~VsVID~~t--~~vv~tI~v~g~~~~~P~g~~~ 191 (386)
T 3sjl_D 131 PRFLVGTYPWMTSL-------TPDGKTLLFY--QF-SPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDT 191 (386)
T ss_dssp CCCCBSCCGGGEEE-------CTTSSEEEEE--EC-SSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTE
T ss_pred cccccCCCCceEEE-------cCCCCEEEEE--Ec-CCCCeEEEEECCC--CcEEEEEECCCcceeecCCCce
Confidence 1 1223322221 2344566554 32 1235788999999 889999998742 3555443
No 9
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=28.35 E-value=3.6e+02 Score=26.57 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=56.3
Q ss_pred EEeCCCCcEEEEEccCCCCccce-eCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCc
Q 044992 447 RIDLRTGVVSRHPISARNLDMAV-INPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEP 525 (597)
Q Consensus 447 ridl~tG~v~~~~L~~~~~EfP~-In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEP 525 (597)
++|++||++.++.-.+.. -|+. |.. ..+..|.+... -+.+..+|..|.+. +..+.++. |+
T Consensus 69 ~vD~~Tgkv~~~~~l~~~-~FgeGit~-----~g~~ly~ltw~----~~~v~v~D~~t~~~----~~ti~~~~-----eG 129 (262)
T 3nol_A 69 KVDIESGKTLQQIELGKR-YFGEGISD-----WKDKIVGLTWK----NGLGFVWNIRNLRQ----VRSFNYDG-----EG 129 (262)
T ss_dssp EECTTTCCEEEEEECCTT-CCEEEEEE-----ETTEEEEEESS----SSEEEEEETTTCCE----EEEEECSS-----CC
T ss_pred EEECCCCcEEEEEecCCc-cceeEEEE-----eCCEEEEEEee----CCEEEEEECccCcE----EEEEECCC-----Cc
Confidence 679999999866432211 1221 111 12467776432 25788999999884 44454431 22
Q ss_pred EEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 526 FFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 526 vFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
. + -..|.+.|+.. | +.+.|.++|+.+ .+.++++.+.
T Consensus 130 ~-------g--lt~dg~~L~~S--d---Gs~~i~~iDp~T--~~v~~~I~V~ 165 (262)
T 3nol_A 130 W-------G--LTHNDQYLIMS--D---GTPVLRFLDPES--LTPVRTITVT 165 (262)
T ss_dssp C-------C--EEECSSCEEEC--C---SSSEEEEECTTT--CSEEEEEECE
T ss_pred e-------E--EecCCCEEEEE--C---CCCeEEEEcCCC--CeEEEEEEec
Confidence 1 1 12233444332 3 356899999999 7899999885
No 10
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=27.58 E-value=6.2e+02 Score=27.88 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=43.4
Q ss_pred CceEEEecCCCcccceeEEEEEcCCC-----CCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCC
Q 044992 494 TGLVKLDLTKGERQECTVATRIYGPD-----CYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHL 568 (597)
Q Consensus 494 ~glvK~Dl~tg~~~~~~~~~~~~g~g-----~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~ 568 (597)
+.|+-+|..||+. .+.+...++ ...++|+++.... ||=..-.++- .+....|.+||+++ -
T Consensus 283 ~sv~AlD~~TG~~----~W~~~~~~~d~wd~~~~~~p~l~~~~~--------dG~~~~~l~~-~~~~G~l~~lD~~t--G 347 (677)
T 1kb0_A 283 ASIVALDPDTGKY----KWHYQETPGDNWDYTSTQPMILADIKI--------AGKPRKVILH-APKNGFFFVLDRTN--G 347 (677)
T ss_dssp TEEEEECTTTCCE----EEEEESSTTCCSCCCCCSCCEEEEEEE--------TTEEEEEEEE-CCTTSEEEEEETTT--C
T ss_pred EEEEEEECCCCCE----EEEEecCCCcccccccCCCcEEEeccc--------CCcEeeEEEE-ECCCCEEEEEECCC--C
Confidence 4699999999984 555555433 2467898886431 2311111111 13446899999998 7
Q ss_pred CeEEEEEcC
Q 044992 569 DIVAEVKLP 577 (597)
Q Consensus 569 ~pVA~v~LP 577 (597)
+++.++.+.
T Consensus 348 ~~l~~~~~~ 356 (677)
T 1kb0_A 348 KFISAKNFV 356 (677)
T ss_dssp CEEEEEESS
T ss_pred CEecccccc
Confidence 788888754
No 11
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=26.60 E-value=1.7e+02 Score=28.58 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=47.0
Q ss_pred ceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEE
Q 044992 480 RYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFL 559 (597)
Q Consensus 480 RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~ 559 (597)
...|...+.- .-+.|.++|++||+. ......+...|+ |-+-+ . .+.-|+++ -....+.
T Consensus 31 ~~LyestG~~--g~S~v~~vD~~tgkv----~~~~~l~~~~fg-eGi~~-~--------~~~ly~lt------w~~~~v~ 88 (243)
T 3mbr_X 31 GHLYESTGET--GRSSVRKVDLETGRI----LQRAEVPPPYFG-AGIVA-W--------RDRLIQLT------WRNHEGF 88 (243)
T ss_dssp TEEEEEECCT--TSCEEEEEETTTCCE----EEEEECCTTCCE-EEEEE-E--------TTEEEEEE------SSSSEEE
T ss_pred CEEEEECCCC--CCceEEEEECCCCCE----EEEEeCCCCcce-eEEEE-e--------CCEEEEEE------eeCCEEE
Confidence 4677665431 236899999999984 444555554443 33311 1 13345542 2345789
Q ss_pred EEeCCCCCCCeEEEEEcCC
Q 044992 560 VMDAKSPHLDIVAEVKLPQ 578 (597)
Q Consensus 560 VlDA~~~~~~pVA~v~LP~ 578 (597)
|+|+++ +..++++..+.
T Consensus 89 v~D~~t--l~~~~ti~~~~ 105 (243)
T 3mbr_X 89 VYDLAT--LTPRARFRYPG 105 (243)
T ss_dssp EEETTT--TEEEEEEECSS
T ss_pred EEECCc--CcEEEEEeCCC
Confidence 999999 88999998873
No 12
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=25.22 E-value=2.6e+02 Score=29.42 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=46.4
Q ss_pred CceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEE--eC---CC
Q 044992 479 NRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVH--DE---KA 553 (597)
Q Consensus 479 ~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~--d~---~~ 553 (597)
.+++|.+.......-+.|..+|+.|++. +.....| .+|=++..+ |..+|.+.-. +. ..
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~v----v~~I~vG-----~~Pgia~Sp--------Dgk~lyVan~~~~~~~~G~ 146 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRI----LGMTDGG-----FLPHPVAAE--------DGSFFAQASTVFERIARGK 146 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEE----EEEEEEC-----SSCEEEECT--------TSSCEEEEEEEEEETTEEE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEE----EEEEECC-----CCCceEECC--------CCCEEEEEeccccccccCC
Confidence 3568876542111117899999999883 4444333 234222222 3334443332 11 01
Q ss_pred CceeEEEEeCCCCCCCeEEEEEcC
Q 044992 554 GESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 554 ~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
+...+.|||+++ .+.++++.+|
T Consensus 147 ~~~~VsviD~~t--~~vv~~I~v~ 168 (426)
T 3c75_H 147 RTDYVEVFDPVT--FLPIADIELP 168 (426)
T ss_dssp EEEEEEEECTTT--CCEEEEEEET
T ss_pred CCCEEEEEECCC--CcEEEEEECC
Confidence 234789999999 8899999997
No 13
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=22.96 E-value=2e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeccC---CCeEEEEEEc----CCCCccceEEEeeCCccCCCCCcceeeecCCcEEEE
Q 044992 292 PETGEMFAFRYSPM---PPFVTYFWFD----ANGEKQPDVHIKMPGQWLRHPPLMHDFAITKRYAIF 351 (597)
Q Consensus 292 P~tGel~~f~~~~~---~p~~~~~~~d----~~G~~~~~~~i~l~~~~~~~p~~iHDfaiTenyvVf 351 (597)
-.||..|.+..... ..-+++|+++ ++|.++|-. -|||...+++|.+|
T Consensus 34 lktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYk-------------TI~d~~~~~~~~~f 87 (120)
T 4guc_A 34 LKHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYK-------------TIYDSGLKHNYGRF 87 (120)
T ss_dssp EETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEE-------------EEECCCCCTTEEEE
T ss_pred cccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEE-------------EeccCCCcCCeeEE
Confidence 34788887776653 2459999996 567776532 35888889998877
No 14
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=21.76 E-value=2.7e+02 Score=27.41 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=44.1
Q ss_pred eEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEE
Q 044992 481 YVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLV 560 (597)
Q Consensus 481 Y~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~V 560 (597)
..|.+.+.- .-+.|.++|++||+. ......++..|+ |-+-+ . .+--|++ +. ....+.|
T Consensus 54 ~LyestG~~--g~S~v~~vD~~Tgkv----~~~~~l~~~~Fg-eGit~-~--------g~~ly~l----tw--~~~~v~v 111 (262)
T 3nol_A 54 YFYESTGLN--GRSSIRKVDIESGKT----LQQIELGKRYFG-EGISD-W--------KDKIVGL----TW--KNGLGFV 111 (262)
T ss_dssp EEEEEEEET--TEEEEEEECTTTCCE----EEEEECCTTCCE-EEEEE-E--------TTEEEEE----ES--SSSEEEE
T ss_pred EEEEECCCC--CCceEEEEECCCCcE----EEEEecCCccce-eEEEE-e--------CCEEEEE----Ee--eCCEEEE
Confidence 577655431 125799999999984 444455544332 22211 1 1222332 22 3357899
Q ss_pred EeCCCCCCCeEEEEEcCC
Q 044992 561 MDAKSPHLDIVAEVKLPQ 578 (597)
Q Consensus 561 lDA~~~~~~pVA~v~LP~ 578 (597)
+|+++ ++.++++..+.
T Consensus 112 ~D~~t--~~~~~ti~~~~ 127 (262)
T 3nol_A 112 WNIRN--LRQVRSFNYDG 127 (262)
T ss_dssp EETTT--CCEEEEEECSS
T ss_pred EECcc--CcEEEEEECCC
Confidence 99999 88999998863
Done!