Query 044992
Match_columns 597
No_of_seqs 228 out of 1072
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 35.7 4.1 0.0003 25.9 0.2 16 289-304 3-18 (31)
2 d1qksa2 b.70.2.1 (A:136-567) C 20.3 44 0.0032 32.1 5.0 33 543-577 381-413 (432)
3 d1qksa2 b.70.2.1 (A:136-567) C 19.7 3.3E+02 0.024 25.3 12.8 104 447-577 46-150 (432)
4 d1l0qa2 b.69.2.3 (A:1-301) Sur 19.6 2.3E+02 0.017 23.5 11.2 86 479-590 211-296 (301)
5 d1l0qa2 b.69.2.3 (A:1-301) Sur 18.7 2.5E+02 0.018 23.3 10.3 72 480-577 2-73 (301)
6 d1hzua2 b.70.2.1 (A:118-543) C 15.9 52 0.0038 31.0 4.2 33 543-577 375-407 (426)
7 d1pbyb_ b.69.2.2 (B:) Quinohem 15.4 3.1E+02 0.022 23.0 9.6 74 480-578 2-76 (337)
8 d1qnia2 b.69.3.1 (A:10-450) Ni 11.9 1.8E+02 0.013 28.5 7.0 83 479-579 83-177 (441)
9 d1pbyb_ b.69.2.2 (B:) Quinohem 10.1 3.3E+02 0.024 22.8 7.8 100 445-579 221-322 (337)
10 d1qfma1 b.69.7.1 (A:1-430) Pro 10.1 5.9E+02 0.043 23.3 13.6 83 337-457 337-419 (430)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=35.74 E-value=4.1 Score=25.86 Aligned_cols=16 Identities=44% Similarity=1.049 Sum_probs=12.9
Q ss_pred cccCCCCcEEEEEecc
Q 044992 289 KKDPETGEMFAFRYSP 304 (597)
Q Consensus 289 k~DP~tGel~~f~~~~ 304 (597)
++||.|||+|-.-|++
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 4799999999876654
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=20.31 E-value=44 Score=32.11 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 543 YILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 543 ylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
+|++.+....+..+.++|+|+++ .+.+++++-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T--~k~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKT--LELKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTT--TEEEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCC--ceEEeEecCC
Confidence 78777777777788999999999 7778888765
No 3
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=19.71 E-value=3.3e+02 Score=25.25 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEeCCCCcEEEEEccCCCCccceeCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcE
Q 044992 447 RIDLRTGVVSRHPISARNLDMAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPF 526 (597)
Q Consensus 447 ridl~tG~v~~~~L~~~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPv 526 (597)
.+|++||++.++.-......--++.| .-||+|.+..+ +.+-..|+.+++.+. +....-+ .+|.
T Consensus 46 v~D~~t~~v~~~~~~g~~~~~v~fSp-----DG~~l~~~s~d-----g~v~~~d~~t~~~~~--~~~i~~~-----~~~~ 108 (432)
T d1qksa2 46 LIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGRD-----GKVNMIDLWMKEPTT--VAEIKIG-----SEAR 108 (432)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEETT-----SEEEEEETTSSSCCE--EEEEECC-----SEEE
T ss_pred EEECCCCcEEEEEeCCCCeeEEEECC-----CCCEEEEEcCC-----CCEEEEEeeCCCceE--EEEEecC-----CCCC
Confidence 45778888776533222111112333 34889876433 467889998876311 1111111 2332
Q ss_pred -EEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 527 -FAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 527 -FVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
+|-.+. -..|.-+|++...+. ..+.|+|+.+ .++++.+...
T Consensus 109 ~~~~s~~----~SpDG~~l~vs~~~~----~~v~i~d~~t--~~~~~~~~~~ 150 (432)
T d1qksa2 109 SIETSKM----EGWEDKYAIAGAYWP----PQYVIMDGET--LEPKKIQSTR 150 (432)
T ss_dssp EEEECCS----TTCTTTEEEEEEEET----TEEEEEETTT--CCEEEEEECC
T ss_pred CeEEecc----cCCCCCEEEEEcCCC----CeEEEEeCcc--ccceeeeccC
Confidence 222222 234555887766543 4688999998 7888887764
No 4
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=19.57 E-value=2.3e+02 Score=23.47 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=49.9
Q ss_pred CceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeE
Q 044992 479 NRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKF 558 (597)
Q Consensus 479 ~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel 558 (597)
.++.|.+..+. ..+.|..+|+.+++. +..+..+ ++|.-|.=. .|..+|++.. . ....+
T Consensus 211 g~~~~v~~~~~--~~~~v~v~D~~t~~~----~~~~~~~-----~~~~~va~s-------pdg~~l~va~--~--~~~~i 268 (301)
T d1l0qa2 211 GTKAYVTNVDK--YFNTVSMIDTGTNKI----TARIPVG-----PDPAGIAVT-------PDGKKVYVAL--S--FCNTV 268 (301)
T ss_dssp SSEEEEEEECS--SCCEEEEEETTTTEE----EEEEECC-----SSEEEEEEC-------TTSSEEEEEE--T--TTTEE
T ss_pred ccccccccccc--eeeeeeeeecCCCeE----EEEEcCC-----CCEEEEEEe-------CCCCEEEEEE--C--CCCeE
Confidence 45555543332 235688899999873 3333222 345444322 2344765443 2 23479
Q ss_pred EEEeCCCCCCCeEEEEEcCCcCCCCccccccc
Q 044992 559 LVMDAKSPHLDIVAEVKLPQRVPAGFHGLFVR 590 (597)
Q Consensus 559 ~VlDA~~~~~~pVA~v~LP~rVP~GFHG~fv~ 590 (597)
.|+|.++ .+.++++.+- .-|++. |.|+.
T Consensus 269 ~v~D~~t--~~~~~~~~vg-~~P~~~-g~f~~ 296 (301)
T d1l0qa2 269 SVIDTAT--NTITATMAVG-KNPYAS-GQFIG 296 (301)
T ss_dssp EEEETTT--TEEEEEEECS-SSEECC-SSCEE
T ss_pred EEEECCC--CeEEEEEeCC-CCCcEe-EEEcc
Confidence 9999998 7889988764 357776 55543
No 5
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=18.70 E-value=2.5e+02 Score=23.33 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=43.7
Q ss_pred ceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEE
Q 044992 480 RYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFL 559 (597)
Q Consensus 480 RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~ 559 (597)
-|+|.+..+ -+.|..+|++|++. +..+..| ..|.=|. -..|..+|++.. .....+.
T Consensus 2 ~~~yV~~~~----~~~v~v~D~~t~~~----~~~i~~g-----~~p~~va-------~spdG~~l~v~~----~~~~~i~ 57 (301)
T d1l0qa2 2 TFAYIANSE----SDNISVIDVTSNKV----TATIPVG-----SNPMGAV-------ISPDGTKVYVAN----AHSNDVS 57 (301)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEE----EEEEECS-----SSEEEEE-------ECTTSSEEEEEE----GGGTEEE
T ss_pred eEEEEEECC----CCEEEEEECCCCeE----EEEEECC-----CCceEEE-------EeCCCCEEEEEE----CCCCEEE
Confidence 388876433 14689999999983 4444443 3443232 123455775332 1234689
Q ss_pred EEeCCCCCCCeEEEEEcC
Q 044992 560 VMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 560 VlDA~~~~~~pVA~v~LP 577 (597)
|+|.++ .+.++++...
T Consensus 58 v~d~~t--~~~~~~~~~~ 73 (301)
T d1l0qa2 58 IIDTAT--NNVIATVPAG 73 (301)
T ss_dssp EEETTT--TEEEEEEECS
T ss_pred EEECCC--Cceeeeeecc
Confidence 999998 7788887765
No 6
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.92 E-value=52 Score=31.00 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.6
Q ss_pred EEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcC
Q 044992 543 YILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLP 577 (597)
Q Consensus 543 ylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP 577 (597)
+|++.+.......+.+.|+|+++ .++++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T--~k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKT--LKLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTT--TEEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCC--CeEEEEECCC
Confidence 77777777667788899999999 7788887654
No 7
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=15.43 E-value=3.1e+02 Score=22.99 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=42.8
Q ss_pred ceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcC-CCCCCCCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeE
Q 044992 480 RYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYG-PDCYGGEPFFAARDAADKEADEDDGYILSYVHDEKAGESKF 558 (597)
Q Consensus 480 RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g-~g~~~gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel 558 (597)
+|.+.+..+ +.|.-+|+++++. +.....+ .+..+....|-| |.-+|++. . .....|
T Consensus 2 ~~~vt~~~d-----~~v~v~D~~s~~~----~~~i~~~~~~~~~~~i~~sp----------Dg~~l~v~--~--~~~~~v 58 (337)
T d1pbyb_ 2 DYILAPARP-----DKLVVIDTEKMAV----DKVITIADAGPTPMVPMVAP----------GGRIAYAT--V--NKSESL 58 (337)
T ss_dssp EEEEEEETT-----TEEEEEETTTTEE----EEEEECTTCTTCCCCEEECT----------TSSEEEEE--E--TTTTEE
T ss_pred eEEEEEcCC-----CEEEEEECCCCeE----EEEEECCCCCCCccEEEECC----------CCCEEEEE--E--CCCCeE
Confidence 466655433 5788899999873 2222222 233333333332 22355443 1 223579
Q ss_pred EEEeCCCCCCCeEEEEEcCC
Q 044992 559 LVMDAKSPHLDIVAEVKLPQ 578 (597)
Q Consensus 559 ~VlDA~~~~~~pVA~v~LP~ 578 (597)
.|+|..+ .+++.++.++.
T Consensus 59 ~v~D~~t--~~~~~~~~~~~ 76 (337)
T d1pbyb_ 59 VKIDLVT--GETLGRIDLST 76 (337)
T ss_dssp EEEETTT--CCEEEEEECCB
T ss_pred EEEECCC--CcEEEEEecCC
Confidence 9999998 78889988863
No 8
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=11.90 E-value=1.8e+02 Score=28.45 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=44.8
Q ss_pred CceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCCCCcEEEeeCCCCCCCCCCCcEEEEEE----------
Q 044992 479 NRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYGGEPFFAARDAADKEADEDDGYILSYV---------- 548 (597)
Q Consensus 479 ~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~gEPvFVPr~~~~~~~~EDDGylls~V---------- 548 (597)
-||+|.+... -+.|+++|++|++. ......+.+.-+.--.|.|.+. -.|+++.-
T Consensus 83 Gr~lfV~d~~----~~rVavIDl~t~k~----~~ii~iP~g~gphgi~~spdg~--------t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 83 GKYLFINDKA----NTRVARIRLDIMKT----DKITHIPNVQAIHGLRLQKVPK--------TNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp EEEEEEEETT----TTEEEEEETTTTEE----EEEEECTTCCCEEEEEECCSSB--------CCEEEEEECSCEESSCSS
T ss_pred CCEEEEEcCC----CCEEEEEECCCCcE----eeEEecCCCCCccceEEeccCC--------EEEEEeccCCcccccCcc
Confidence 4788876432 25799999999873 2222233221111113334322 12443321
Q ss_pred --EeCCCCceeEEEEeCCCCCCCeEEEEEcCCc
Q 044992 549 --HDEKAGESKFLVMDAKSPHLDIVAEVKLPQR 579 (597)
Q Consensus 549 --~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~r 579 (597)
.+.....+.+.++|+.+ +..++++.++..
T Consensus 147 ~~~~~~~~~~~~~~iD~~t--~~v~~qI~v~~~ 177 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAET--MDVAWQVIVDGN 177 (441)
T ss_dssp SCCCGGGEEEEEEEEETTT--CSEEEEEEESSC
T ss_pred cccccccccceEEeecCcc--ceeeEEEecCCC
Confidence 11122235567899998 788888888754
No 9
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=10.11 E-value=3.3e+02 Score=22.78 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=55.3
Q ss_pred EEEEeCCCCcEEEEEccCCCCc--cceeCCCCCCCCCceEEEecCCCCCCCCceEEEecCCCcccceeEEEEEcCCCCCC
Q 044992 445 KVRIDLRTGVVSRHPISARNLD--MAVINPGYVAKKNRYVYAAVGDPMPKMTGLVKLDLTKGERQECTVATRIYGPDCYG 522 (597)
Q Consensus 445 r~ridl~tG~v~~~~L~~~~~E--fP~In~~~~Gr~~RY~Y~~~~~~~~~~~glvK~Dl~tg~~~~~~~~~~~~g~g~~~ 522 (597)
-..++..+|.+........... .-.++ ...++.|... +.|..+|+.+++. +.....+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------~~i~v~d~~~~~~----~~~~~~~----- 279 (337)
T d1pbyb_ 221 LLTMDLETGEMAMREVRIMDVFYFSTAVN-----PAKTRAFGAY-------NVLESFDLEKNAS----IKRVPLP----- 279 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEEC-----TTSSEEEEEE-------SEEEEEETTTTEE----EEEEECS-----
T ss_pred EEEEEcCCCcEEEEEecCCCcceEEEEec-----ccceEEEEcc-------ccEEEEECCCCcE----EEEEcCC-----
Confidence 4456778887765444321110 01121 2345666542 4678899998873 3333332
Q ss_pred CCcEEEeeCCCCCCCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCeEEEEEcCCc
Q 044992 523 GEPFFAARDAADKEADEDDGYILSYVHDEKAGESKFLVMDAKSPHLDIVAEVKLPQR 579 (597)
Q Consensus 523 gEPvFVPr~~~~~~~~EDDGylls~V~d~~~~~Sel~VlDA~~~~~~pVA~v~LP~r 579 (597)
+.|..+.=. .|.-+|.+.- ..+.+.|+|+++ ++.|+++.+|..
T Consensus 280 ~~~~~~~~s-------~dG~~l~v~~-----~~~~i~v~D~~t--~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 280 HSYYSVNVS-------TDGSTVWLGG-----ALGDLAAYDAET--LEKKGQVDLPGN 322 (337)
T ss_dssp SCCCEEEEC-------TTSCEEEEES-----BSSEEEEEETTT--CCEEEEEECGGG
T ss_pred CCEEEEEEC-------CCCCEEEEEe-----CCCcEEEEECCC--CcEEEEEECCCC
Confidence 233334322 2334554431 224699999999 889999999843
No 10
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.05 E-value=5.9e+02 Score=23.30 Aligned_cols=83 Identities=7% Similarity=-0.038 Sum_probs=43.5
Q ss_pred CcceeeecCCcEEEEEecceeccHHHHHhcCCCceeeCCCCCcEEEEeeCCCCCCCceEEEecCCcceeeecceeecCCC
Q 044992 337 PLMHDFAITKRYAIFVDTQVQAYGMEMILRREPLLHSDPTKVSRIGVMPRYAKNSSQMRWFDAPGLNNIHAVNAWDEEDG 416 (597)
Q Consensus 337 ~~iHDfaiTenyvVf~d~p~~~~~~~m~~~g~~~~~~dp~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg 416 (597)
.++.++.++++|+|+.. ..+..+++.|++..++ ...-+..|+.......|+-.+ .
T Consensus 337 ~~~~~~~~~~~~lvl~~--------------------~~~~~~~l~v~~~~~~---~~~~~~~~~~~sv~~~~~~~~--~ 391 (430)
T d1qfma1 337 VLEWVACVRSNFLVLCY--------------------LHDVKNTLQLHDLATG---ALLKIFPLEVGSVVGYSGQKK--D 391 (430)
T ss_dssp EEEEEEEETTTEEEEEE--------------------EETTEEEEEEEETTTC---CEEEEECCCSSEEEEEECCTT--C
T ss_pred eeeeEEEEECCEEEEEE--------------------EcCCEeEEEEEECCCC---cEEEecCCCCceEeeccCCCC--C
Confidence 45566777778776542 2234567777777543 222233344433344444222 2
Q ss_pred cEEEEEeecCCChHHHHHHhhhccceEEEEEEeCCCCcEEE
Q 044992 417 NVIVMVAPNILSVEQVFERMELIHCLMEKVRIDLRTGVVSR 457 (597)
Q Consensus 417 ~~Ivl~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tG~v~~ 457 (597)
+++.+....+..+ -.-|++|++||+.+.
T Consensus 392 ~~~~~~~ss~~tP-------------~~~y~~Dl~t~~~~~ 419 (430)
T d1qfma1 392 TEIFYQFTSFLSP-------------GIIYHCDLTKEELEP 419 (430)
T ss_dssp SEEEEEEECSSCC-------------CEEEEEETTSSSCCC
T ss_pred CEEEEEEcCCCCC-------------CeEEEEECCCCCcce
Confidence 3666554433321 245677888887543
Done!